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title: 'OpenPBTA: An Open Pediatric Brain Tumor Atlas'
keywords:
- pediatric cancer
- brain tumor
- tumor atlas
- reproducibility
- open science
- classification
- somatic variation
lang: en-US
authors:
- github: jashapiro
name: Joshua A. Shapiro
initials: JAS
orcid: 0000-0002-6224-0347
twitter: jashapiro
email: josh.shapiro@ccdatalab.org
contributions:
- Methodology
- Software
- Validation
- Formal analysis
- Investigation
- Writing - Original draft
- Writing - Review and editing
- Visualization
- Supervision
affiliations:
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA
funders: Alex's Lemonade Stand Foundation Childhood Cancer Data Lab (CCDL)
- github: kgaonkar6
name: Krutika S. Gaonkar
initials: KSG
orcid: 0000-0003-0838-2405
twitter: aggokittu
email: ksgaonkar@outlook.com
contributions:
- Data curation
- Formal analysis
- Investigation
- Methodology
- Software
- Writing – Original draft
- Writing - Review and editing
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: sjspielman
name: Stephanie J. Spielman
initials: SJS
orcid: 0000-0002-9090-4788
twitter: stephspiel
email: stephanie.spielman@gmail.com
contributions:
- Validation
- Formal analysis
- Writing - Original draft
- Writing - Review and editing
- Investigation
- Software
- Visualization
- Supervision
- Funding acquisition
affiliations:
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA<sup>+</sup>
- Rowan University, Glassboro, NJ, 08028, USA
symbol_str: +
funders: Alex's Lemonade Stand Foundation Childhood Cancer Data Lab (CCDL)
- github: cansavvy
name: Candace L. Savonen
initials: CLS
orcid: 0000-0001-6331-7070
twitter: cansavvy
email: csavonen@fredhutch.org
contributions:
- Methodology
- Software
- Validation
- Formal analysis
- Investigation
- Writing - Original draft
- Writing - Review and editing
- Visualization
affiliations:
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA
- Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA<sup>+</sup>
symbol_str: +
funders: Alex's Lemonade Stand Foundation Childhood Cancer Data Lab (CCDL)
- github: cbethell
name: Chante J. Bethell
initials: CJB
orcid: 0000-0001-9653-8128
twitter: cjbethell
email: cbethell@ccdatalab.org
contributions:
- Methodology
- Validation
- Formal analysis
- Investigation
- Writing - Original draft
- Visualization
affiliations:
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA
funders: Alex's Lemonade Stand Foundation Childhood Cancer Data Lab (CCDL)
- github: runjin326
name: Run Jin
initials: RJ
orcid: 0000-0002-8958-9266
twitter: runjin
email: runjin@sas.upenn.edu
contributions:
- Data curation
- Formal analysis
- Visualization
- Writing – Original draft
- Writing - Review and editing
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: komalsrathi
name: Komal S. Rathi
initials: KSR
orcid: 0000-0001-5534-6904
twitter: komalsrathi
email: rathik@chop.edu
contributions:
- Formal analysis
- Investigation
- Methodology
- Writing – Original draft
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: yuankunzhu
name: Yuankun Zhu
initials: YZ
orcid: 0000-0002-2455-9525
twitter: zhuyuankun
email: zhuy@chop.edu
contributions:
- Data curation
- Formal analysis
- Investigation
- Methodology
- Supervision
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: LauraEgolf
name: Laura E. Egolf
initials: LEE
orcid: 0000-0002-7103-4801
twitter: LauraEgolf
email: laura.e.egolf@gmail.com
contributions:
- Formal analysis
- Writing - Original draft
affiliations:
- Cell and Molecular Biology Graduate Group, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, 19104, USA
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: baileyckelly
name: Bailey K. Farrow
initials: BKF
orcid: 0000-0001-6727-6333
email: farrowb@chop.edu
contributions:
- Data curation
- Software
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: dmiller15
name: Daniel P. Miller
initials: DPM
orcid: 0000-0002-2032-4358
email: millerd15@chop.edu
contributions: Formal analysis
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: yangyangclover
name: Yang Yang
initials: YY
orcid: 0000-0002-5560-2936
email: yangyangclover@gmail.com
contributions:
- Formal analysis
- Software
affiliations:
- Ben May Department for Cancer Research, University of Chicago, Chicago, IL, 60637, USA
- github: tkoganti
name: Tejaswi Koganti
initials: TK
orcid: 0000-0002-7733-6480
email: tejaswikoganti@gmail.com
contributions:
- Formal analysis
- Investigation
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: NNoureen
name: Nighat Noureen
initials: NN
orcid: 0000-0001-7495-8201
email: noureen@uthscsa.edu
contributions:
- Formal analysis
- Visualization
- Writing - Original draft
affiliations:
- Greehey Children's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA
- github: mkoptyra
name: Mateusz P. Koptyra
initials: MPK
orcid: 0000-0002-3857-6633
twitter: koptyram
email: koptyram@chop.edu
contributions:
- Formal analysis
- Writing – Original draft
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: fingerfen
name: Nhat Duong
initials: ND
orcid: 0000-0003-2852-4263
twitter: asiannhat
email: nd141@duke.edu
contributions:
- Formal analysis
- Investigation
- Methodology
affiliations:
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Mariarita Santi
initials: MS
orcid: 0000-0002-6728-3450
email: santim@chop.edu
contributions:
- Investigation
- Validation
- Writing - Review and editing
affiliations:
- Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA
- name: Jung Kim
initials: JK
orcid: 0000-0001-6274-2841
email: jung.kim2@nih.gov
contributions:
- Investigation
- Writing - Review and editing
affiliations:
- Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD 20850, USA
- name: Shannon Robins
initials: SR
email: Shannonmrobins@gmail.com
orcid: 0000-0003-0594-1953
contributions: Data curation
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Phillip B. Storm
initials: PBS
orcid: 0000-0002-7964-2449
email: storm@chop.edu
contributions:
- Conceptualization
- Funding acquisition
- Resources
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
funders:
- Alex's Lemonade Stand Foundation (Catalyst)
- Children’s Hospital of Philadelphia Division of Neurosurgery
- name: Stephen C. Mack
initials: SCM
orcid: 0000-0001-9620-4742
email: stephen.mack@stjude.org
contributions: Writing - Review and editing
affiliations:
- Department of Developmental Neurobiology, St. Jude Children’s Research Hospital, Memphis, TN, 38105, USA
- github: jvlilly
name: Jena V. Lilly
initials: JVL
orcid: 0000-0003-1439-6045
twitter: jvlilly
email: lillyj@chop.edu
contributions:
- Conceptualization
- Funding acquisition
- Project administration
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: xiehongbo
name: Hongbo M. Xie
initials: HMX
orcid: 0000-0003-2223-0029
twitter: xiehb
email: xiem1@chop.edu
contributions:
- Methodology
- Supervision
affiliations:
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: jainpayal022
name: Payal Jain
initials: PJ
orcid: 0000-0002-5914-9083
twitter: jainpayal022
email: jain.payal022@gmail.com
contributions:
- Data curation
- Investigation
- Validation
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: pichairaman
name: Pichai Raman
initials: PR
orcid: 0000-0001-6948-2157
twitter: PichaiRaman
email: pichai.raman@gmail.com
contributions:
- Conceptualization
- Formal analysis
- Methodology
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Brian R. Rood
initials: BRR
email: brood@childrensnational.org
contributions: Conceptualization
affiliations:
- Children's National Research Institute, Washington, D.C.
- George Washington University School of Medicine and Health Sciences, Washington, D.C., 20052, USA
- name: Rishi R. Lulla
initials: RRL
orcid: 0000-0003-4109-2207
email: rishi_lulla@brown.edu
contributions: Conceptualization
affiliations:
- Division of Hematology/Oncology, Hasbro Children's Hospital, Providence, Rhode Island, 02903, USA
- Department of Pediatrics, The Warren Alpert School of Brown University, Providence, Rhode Island, 02912, USA
- name: Javad Nazarian
initials: JN
orcid: 0000-0002-1951-9828
email: jnazarian@childrensnational.org
contributions: Conceptualization
affiliations:
- Children's National Research Institute, Washington, D.C., 20012, USA
- George Washington University School of Medicine and Health Sciences, Washington, D.C., 20052, USA
- University of Zurich, Department of Pediatrics, Zurich, Switzerland
- github: aadamk
name: Adam A. Kraya
initials: AAK
orcid: 0000-0002-8526-5694
email: krayaa@chop.edu
contributions: Methodology
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Zalman Vaksman
initials: ZV
email: zvaksman@gmail.com
contributions:
- Formal analysis
- Investigation
affiliations:
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: allisonheath
name: Allison P. Heath
initials: APH
orcid: 0000-0002-2583-9668
twitter: allig8r
email: heathap@chop.edu
contributions:
- Project administration
- Funding acquisition
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
funders:
- NIH U2C HL138346-03
- NCI/NIH Contract No. 75N91019D00024, Task Order No. 75N91020F00003
- Australian Government, Department of Education
- name: Cassie Kline
initials: CK
orcid: 0000-0001-7765-7690
email: klinec@chop.edu
twitter: cassiekmd
contributions:
- Supervision
- Investigation
- Writing - Review and editing
affiliations:
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Laura Scolaro
initials: LS
email: scolarol@chop.edu
contributions: Data curation
affiliations:
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Angela N. Viaene
initials: ANV
orcid: 0000-0001-6430-8360
email: viaenea@chop.edu
contributions:
- Investigation
- Validation
affiliations:
- Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA
- github: HuangXiaoyan0106
name: Xiaoyan Huang
initials: XH
orcid: 0000-0001-7267-4512
email: huangx@chop.edu
contributions: Formal analysis
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: gwaybio
name: Gregory P. Way
initials: GPW
orcid: 0000-0002-0503-9348
twitter: gwaybio
email: gregory.way@cuanschutz.edu
contributions:
- Investigation
- Writing - Review and editing
affiliations:
- Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, 80045, USA
- github: envest
name: Steven M. Foltz
initials: SMF
email: steven.foltz@pennmedicine.upenn.edu
orcid: 0000-0002-9526-8194
contributions:
- Validation
- Funding acquisition
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, 19104, USA
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA
funders:
- Alex's Lemonade Stand Foundation GR-000002471
- National Institutes of Health K12GM081259
- github: zhangb1
name: Bo Zhang
initials: BZ
orcid: 0000-0002-0743-5379
email: zhangb1@chop.edu
contributions:
- Data curation
- Formal analysis
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: arpoe
name: Anna R. Poetsch
initials: ARP
orcid: 0000-0003-3056-4360
twitter: APoetsch
email: arpoetsch@gmail.com
contributions:
- Formal analysis
- Funding acquisition
- Writing – Review and editing
affiliations:
- Biotechnology Center, Technical University Dresden, Germany
- National Center for Tumor Diseases, Dresden, Germany
funders:
- The St. Anna Kinderkrebsforschung, Austria
- The Mildred Scheel Early Career Center Dresden P2, funded by the German Cancer Aid
- name: Sabine Mueller
initials: SM
orcid: 0000-0002-3452-5150
email: sabine.mueller@ucsf.edu
contributions: Conceptualization
affiliations:
- Department of Neurology, Neurosurgery and Pediatrics, University of California, San Francisco, San Francisco, CA, 94115, USA
- github: bmennis
name: Brian M. Ennis
initials: BME
orcid: 0000-0002-2653-5009
email: ennisb@chop.edu
contributions:
- Data curation
- Formal analysis
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Michael Prados
initials: MP
orcid: 0000-0002-9630-2075
email: michael.prados@ucsf.edu
contributions: Conceptualization
affiliations:
- University of California, San Francisco, San Francisco, CA, USA, 94115, USA
- github: sdiskin
name: Sharon J. Diskin
initials: SJD
orcid: 0000-0002-7200-8939
twitter: sjdiskin
email: diskin@chop.edu
contributions:
- Investigation
- Supervision
- Validation
- Funding acquisition
- Writing - Review and editing
affiliations:
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Pediatrics, University of Pennsylvania, Philadelphia, PA, 19104, USA
- github: syzheng
name: Siyuan Zheng
initials: SZ
email: zhengs3@uthscsa.edu
twitter: zhengsiyuan
orcid: 0000-0002-1031-9424
contributions:
- Formal analysis
- Visualization
- Writing - Original draft
- Supervision
- Writing - Review and editing
affiliations:
- Greehey Children's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA
- github: Yiran-Guo
name: Yiran Guo
initials: YG
orcid: 0000-0002-6549-8589
twitter: YiranGuo3
email: guoy@chop.edu
contributions:
- Formal analysis
- Writing - Review and editing
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: shrivatsk
name: Shrivats Kannan
initials: SK
orcid: 0000-0002-1460-920X
twitter: kshrivats
email: shrivatskannan@gmail.com
contributions:
- Formal analysis
- Methodology
- Writing – Original draft
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: awaanders
name: Angela J. Waanders
initials: AJW
orcid: 0000-0002-0571-2889
email: awaanders@luriechildrens.org
contributions:
- Supervision
- Conceptualization
affiliations:
- Division of Hematology, Oncology, Neuro-Oncology, and Stem Cell Transplant, Ann & Robert H Lurie Children’s Hospital of Chicago, Chicago, IL, 60611, USA
- Department of Pediatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA
- name: Ashley S. Margol
initials: ASM
orcid: 0000-0002-3038-8005
email: amargol@chla.usc.edu
contributions: Writing - Review and editing
affiliations:
- Division of Hematology and Oncology, Children's Hospital of Los Angeles, Los Angeles, CA, 90027, USA
- Department of Pediatrics, Keck School of Medicine of University of Southern California, Los Angeles, CA, 90033, USA
- github: liberaliscomputing
name: Meen Chul Kim
initials: MCK
orcid: 0000-0002-0308-783X
email: kimm11@chop.edu
contributions: Data curation
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Derek Hanson
initials: DH
orcid: 0000-0002-0024-5142
email: derek.hanson@hackensackmeridian.org
contributions: Validation
affiliations:
- Hackensack Meridian School of Medicine, Nutley, NJ, 07110, USA
- Hackensack University Medical Center, Hackensack, NJ, 07601, USA
- github: nicholasvk
name: Nicholas Van Kuren
initials: NK
orcid: 0000-0002-7414-9516
email: vankurenn@chop.edu
contributions:
- Data curation
- Software
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: wongjessica93
name: Jessica Wong
initials: JW
orcid: 0000-0003-1508-7631
twitter: jessicawongbfx
email: jessicawong.bfx@gmail.com
contributions: Writing – Original draft
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: rebkau
name: Rebecca S. Kaufman
initials: RSK
orcid: 0000-0001-8535-9730
email: kaufmanr1@chop.edu
contributions:
- Formal analysis
- Investigation
- Validation
affiliations:
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Noel Coleman
initials: NC
orcid: 0000-0001-6454-1285
email: colemann2@chop.edu
contributions: Data curation
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: devbyaccident
name: Christopher Blackden
initials: CB
email: blackdenc@chop.edu
contributions: Resources
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Kristina A. Cole
initials: KAC
orcid: 0000-0003-0064-2882
email: colek@chop.edu
contributions: Writing - Review and editing
affiliations:
- Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Pediatrics, University of Pennsylvania, Philadelphia, PA, 19104, USA
- Abramson Family Cancer Research Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, Philadelphia, PA, 19104, USA
- github: jenn0307
name: Jennifer L. Mason
initials: JLM
twitter: jenn0307
email: masonjl@chop.edu
contributions: Supervision
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Peter J. Madsen
initials: PJM
orcid: 0000-0001-9266-3685
email: madsenp@chop.edu
twitter: petermadsenmd
contributions: Writing – Review & editing
affiliations:
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- name: Carl J. Koschmann
initials: CJK
orcid: 0000-0002-0825-7615
email: ckoschma@med.umich.edu
contributions: Conceptualization
affiliations:
- Department of Pediatrics, University of Michigan Health, Ann Arbor, MI, 48105, USA
- Pediatric Hematology Oncology, Mott Children's Hospital, Ann Arbor, MI, 48109, USA
- name: Douglas R. Stewart
initials: DRS
orcid: 0000-0001-8193-1488
email: drstewart@mail.nih.gov
contributions:
- Supervision
- Writing - Review and editing
affiliations:
- Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD 20850
- github: ewafula
name: Eric Wafula
initials: EW
orcid: 0000-0001-8073-3797
email: wafulae@chop.edu
contributions:
- Formal analysis
- Software
affiliations:
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: migbro
name: Miguel A. Brown
initials: MAB
orcid: 0000-0001-6782-1442
twitter: migbro
email: brownm28@chop.edu
contributions:
- Data curation
- Methodology
- Formal analysis
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- github: adamcresnick
name: Adam C. Resnick
initials: ACR
orcid: 0000-0003-0436-4189
twitter: adamcresnick
email: resnick@chop.edu
contributions:
- Conceptualization
- Funding acquisition
- Resources
- Supervision
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
funders:
- Alex's Lemonade Stand Foundation (Catalyst)
- Children's Brain Tumor Network
- NIH 3P30 CA016520-44S5, U2C HL138346-03, U24 CA220457-03
- NCI/NIH Contract No. 75N91019D00024, Task Order No. 75N91020F00003
- Children’s Hospital of Philadelphia Division of Neurosurgery
- github: cgreene
name: Casey S. Greene
initials: CSG
orcid: 0000-0001-8713-9213
twitter: greenescientist
email: greenescientist@gmail.com
symbol_str: +
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA
- Center for Health AI, University of Colorado School of Medicine, Aurora, CO, 80045, USA<sup>+</sup>
- Department of Biomedical Informatics, University of Colorado School of Medicine, Aurora, CO, 80045, USA<sup>+</sup>
funders: Alex's Lemonade Stand Foundation Childhood Cancer Data Lab (CCDL)
contributions:
- Conceptualization
- Funding acquisition
- Methodology
- Project administration
- Software
- Supervision
- Writing – Review & editing
- github: jharenza
name: Jo Lynne Rokita^
initials: JR
orcid: 0000-0003-2171-3627
twitter: jolynnerokita
email: rokita@chop.edu
corresponding: yes
contributions:
- Conceptualization
- Data curation
- Formal analysis
- Funding acquisition
- Investigation
- Methodology
- Software
- Supervision
- Writing – Original draft
- Writing - Review and editing
affiliations:
- Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Division of Neurosurgery, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
- Department of Bioinformatics and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
funders:
- Alex's Lemonade Stand Foundation (Young Investigator, Catalyst)
- NCI/NIH Contract No. 75N91019D00024, Task Order No. 75N91020F00003
- github: jaclyn-taroni
name: Jaclyn N. Taroni
initials: JNT
orcid: 0000-0003-4734-4508
twitter: jaclyn_taroni
email: jaclyn.taroni@ccdatalab.org
corresponding: yes
affiliations:
- Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Bala Cynwyd, PA, 19004, USA
funders: Alex's Lemonade Stand Foundation Childhood Cancer Data Lab (CCDL)
contributions:
- Methodology
- Software
- Validation
- Formal analysis
- Investigation
- Data curation
- Writing - Review and editing
- Visualization
- Supervision
- Project administration
- name: Children's Brain Tumor Network
contributions: Conceptualization
- name: Pacific Pediatric Neuro-Oncology Consortium
contributions: Conceptualization