diff --git a/resources.md b/resources.md index 0b92107..366e142 100755 --- a/resources.md +++ b/resources.md @@ -2,7 +2,26 @@ title: Resources available for ABLeS communities --- -## Computational resources +## Specialist expertise + +ABLeS communities are supported by the NCI, Pawsey and ABLeS specialists to install, develop, optimise and deploy tools and workflows on ABLeS projects. +If you are part of an ABLeS community, and need help, please submit a request through the **[GoogleForm](https://docs.google.com/forms/d/e/1FAIpQLSfzHJajEKTnGuYWb1gLRR2nlUExLIRM7qSGy_hhbiCKB3KX2Q/viewform?usp=sf_link)**. + +## Computational resources at Pawsey + +ABLeS includes 10 million service units (SUs) of compute capacity on [Setonix](https://pawsey.org.au/systems/setonix/) and flexible storage on the fast S3 based [Acacia](https://pawsey.org.au/systems/acacia/) storage system. These SUs can be utilised across CPU and GPU nodes. + +### Available software at Pawsey + +There is a wide range of centrally installed software for Setonix users, including popular bioinformatics tools. More information about [software on Setonix](https://support.pawsey.org.au/documentation/display/US/Software+Stack) + +Setonix users can also install their choice of software on the `/software` partition. We also encourage usage of containers with Singularity. Users are able to download any containers they like! + +### Reference datasets at Pawsey +Popular bioinformatics [reference datasets](https://support.pawsey.org.au/documentation/display/US/Life+Science+and+Bioinformatics) are available on Pawsey. Additional reference sets can be requested via help@pawsey.org.au + + +## Computational resources at NCI ABLeS encompasses 16 million service units (SUs) of compute capacity and 500 TB of storage available per annum on the [Gadi supercomputer at the NCI](https://nci.org.au/our-systems/hpc-systems). These SUs can be utilised to run jobs on different nodes of GADI that are equipped with either CPUs or GPUs. @@ -14,16 +33,11 @@ ABLes computational resources are allocated to each community according to the q > **Note:** Additional resources can be requested through the form [here](https://docs.google.com/forms/d/e/1FAIpQLSfzHJajEKTnGuYWb1gLRR2nlUExLIRM7qSGy_hhbiCKB3KX2Q/viewform?usp=sf_link) -## Specialist expertise - -ABLeS communities are supported by the NCI, Pawsey and ABLeS specialists to install, develop, optimise and deploy tools and workflows on ABLeS projects. -If you are part of an ABLeS community, and need help, please submit a request through the **[GoogleForm](https://docs.google.com/forms/d/e/1FAIpQLSfzHJajEKTnGuYWb1gLRR2nlUExLIRM7qSGy_hhbiCKB3KX2Q/viewform?usp=sf_link)**. - -## Centrally supported tools and software through NCI (`/apps`) +### Centrally supported tools and software through NCI (`/apps`) Details about software available through the NCI are available [here](https://opus.nci.org.au/display/Help/5.+Software+Applications) -## Shared repository of tools and software +### Shared repository of tools and software ABLeS communities have access to the `Australian BioCommons Tools and Workflows project`, in project allocation `if89`. This is a repository of popular tools, containers and workflows that can be used by @@ -31,5 +45,3 @@ anyone in the NCI user community. Anyone from an NCI community can contribute to `if89` and add more tools that will be shared with others. Details on if89 are available at **[if89 page](/ables/if89/)** - -