From d554a7787fd96c8beeb25fe7ecb377f433ae4b3e Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Tue, 10 Sep 2024 13:50:52 +1000 Subject: [PATCH 1/9] Update dependencies --- .gitignore | 135 +++- .pre-commit-config.yaml | 2 +- poetry.lock | 1422 ++++++++++----------------------------- pyproject.toml | 55 +- 4 files changed, 520 insertions(+), 1094 deletions(-) diff --git a/.gitignore b/.gitignore index 95b9aa5..1fa36b3 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,136 @@ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +.python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# celery beat schedule file +celerybeat-schedule + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# Deployment +/deployment/*secret* + +# IDE +/.venv/ +/.poetry_env/ .vscode/ +.idea/ + + *.h5 -__pycache__/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 01f3778..9052e74 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -48,4 +48,4 @@ repos: hooks: - id: flake8 name: Flake8 - additional_dependencies: ["flake8-bugbear==20.1.4"] + additional_dependencies: ["flake8-bugbear==24.8.19"] diff --git a/poetry.lock b/poetry.lock index f9804e0..a937c62 100644 --- a/poetry.lock +++ b/poetry.lock @@ -23,10 +23,8 @@ files = [ ] [package.dependencies] -exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""} idna = ">=2.8" 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[metadata] lock-version = "2.0" -python-versions = "^3.10" -content-hash = "4cbe972b3f8dc67cea8f2d7f2829b69fdacd5cfdf68004ebcddce129d2ce1eac" +python-versions = ">=3.12,<3.13" +content-hash = "3e24b1f585549bcc809201e9ebe35219cefa792c962ec2bfd330446beca1aa5d" diff --git a/pyproject.toml b/pyproject.toml index 6fc3fd2..b0ac421 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -2,32 +2,39 @@ name = "ansto-simplon-api" version = "0.2.7" description = "Simulated simplon api" -authors = ["Francisco Hernandez Vivanco ", - "Daniel Eriksson "] +authors = [ + "Francisco Hernandez Vivanco ", + "Daniel Eriksson " +] +readme = "README.md" +homepage = "https://github.com/AustralianSynchrotron/ansto-simplon-api" +repository = "https://github.com/AustralianSynchrotron/ansto-simplon-api" +documentation = "https://github.com/AustralianSynchrotron/ansto-simplon-api" [tool.poetry.dependencies] -python = "^3.10" -fastapi = "^0.111.0" -numpy = "^1.26.4" -pyzmq = "26.0.3" +python = ">=3.12,<3.13" +fastapi = ">=0.114.0,<0.200.0" +numpy = ">=1.26.4,<2.0.0" +pyzmq = "26.2.0" h5py = "3.11.0" hdf5plugin = "4.4.0" -uvicorn = "^0.30.0" -lz4 = " 4.3.3" -tqdm = "^4.66.4" -cbor2 = "5.6.3" +uvicorn = ">=0.30.6,<0.31.0" +lz4 = "4.3.3" +tqdm = ">=4.66.5,<5.0.0" +cbor2 = ">=5.6.4,<5.7.0" bitshuffle = "0.5.1" -requests = "2.32.3" +requests = ">=2.32.3" dectris-compression = "^0.3.1" -[tool.poetry.dev-dependencies] -pre-commit = "^2.17.0" -flake8 = "^4.0.1" -black = "^22.1.0" -isort = "^5.10.1" +[tool.poetry.group.dev] +optional = true + +[tool.poetry.group.dev.dependencies] +pre-commit = "3.8.0" [tool.black] line-length = 88 +target_version = ["py312"] include = '\.pyi?$' exclude = ''' /( @@ -43,6 +50,22 @@ exclude = ''' )/ ''' +[tool.pyright] +ignore = ["**/typing_extensions.py"] +pythonVersion = "3.12" + +[tool.ruff] +line-length = 88 +indent-width = 4 +target-version = "py312" + +[tool.ruff.lint] +extend-select = ["B"] + +[tool.ruff.format] +quote-style = "double" +indent-style = "space" + [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" From 3b0419e7b5df4ba8c179b1b07edd56ea2cf93866 Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Tue, 10 Sep 2024 13:58:12 +1000 Subject: [PATCH 2/9] Pre-commit fixes --- .../routes/ansto_endpoints/load_hdf5_files.py | 10 +++++----- ansto_simplon_api/simulate_zmq_stream.py | 4 ++-- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/ansto_simplon_api/routes/ansto_endpoints/load_hdf5_files.py b/ansto_simplon_api/routes/ansto_endpoints/load_hdf5_files.py index b1c7ad6..2e06186 100644 --- a/ansto_simplon_api/routes/ansto_endpoints/load_hdf5_files.py +++ b/ansto_simplon_api/routes/ansto_endpoints/load_hdf5_files.py @@ -17,16 +17,16 @@ async def set_master_file(hdf5_model: LoadHDF5File): compression=hdf5_model.compression, number_of_datafiles=hdf5_model.number_of_datafiles, ) - except IndexError: + except IndexError as ex: raise HTTPException( status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, detail="The number of datafiles specified exceed the number of datafiles available " "in the master file. Reduce number_of_datafiles", - ) - except Exception as e: + ) from ex + except Exception as ex: raise HTTPException( - status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, detail=str(e) - ) + status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, detail=str(ex) + ) from ex zmq_stream.frame_id = 0 zmq_stream.image_number = 0 return {"value": zmq_stream.hdf5_file_path} diff --git a/ansto_simplon_api/simulate_zmq_stream.py b/ansto_simplon_api/simulate_zmq_stream.py index 629a689..1273910 100644 --- a/ansto_simplon_api/simulate_zmq_stream.py +++ b/ansto_simplon_api/simulate_zmq_stream.py @@ -423,11 +423,11 @@ def start_stream(self) -> None: ZMQ_ADDRESS = environ.get("ZMQ_ADDRESS", "tcp://*:5555") try: HDF5_MASTER_FILE = environ["HDF5_MASTER_FILE"] -except KeyError: +except KeyError as ex: raise KeyError( "No HDF5 master file found. Set the absolute path of the HDF5 master file via the " "HDF5_MASTER_FILE environment variable" - ) + ) from ex DELAY_BETWEEN_FRAMES = float(environ.get("DELAY_BETWEEN_FRAMES", "0.01")) NUMBER_OF_DATA_FILES = int(environ.get("NUMBER_OF_DATA_FILES", "1")) From 1917d85a802e631e0111720024c0570878f8cc02 Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Wed, 11 Sep 2024 09:52:59 +1000 Subject: [PATCH 3/9] Changes to prepare for production deployment --- Dockerfile | 130 ++++- README.md | 10 +- ansto_simplon_api/__init__.py | 3 + ansto_simplon_api/_version.py | 19 + ansto_simplon_api/config.py | 112 ++++ ansto_simplon_api/favicon.ico | Bin 0 -> 15086 bytes ansto_simplon_api/main.py | 37 +- ansto_simplon_api/simulate_zmq_stream.py | 24 +- docker-compose.yml | 27 +- poetry.lock | 625 ++++++++++++++++++++++- pyproject.toml | 4 +- 11 files changed, 940 insertions(+), 51 deletions(-) create mode 100644 ansto_simplon_api/__init__.py create mode 100644 ansto_simplon_api/_version.py create mode 100644 ansto_simplon_api/config.py create mode 100644 ansto_simplon_api/favicon.ico diff --git a/Dockerfile b/Dockerfile index 264f944..0cc9b85 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,25 +1,119 @@ -FROM python:3.11 +# syntax=docker/dockerfile:1.9 -ENV HDF5_MASTER_FILE=/share_data/datasets_full/minimalInsulinMX1/030/testcrystal_0014_master.h5 -ENV POETRY_VERSION=1.8.3 +# Global build arguments +ARG PYTHON_VERSION=3.12 -# Install OS packages -USER root -RUN apt update && apt-get install -y gcc libhdf5-serial-dev -# Create app runner user -RUN useradd -ms /bin/bash asuser -WORKDIR /home/asuser/ +FROM python:${PYTHON_VERSION}-slim-bookworm AS base_runtime -# Setup Poetry environment -COPY pyproject.toml poetry.lock /home/asuser/ -RUN pip install "poetry==$POETRY_VERSION" -RUN poetry config virtualenvs.create false -RUN poetry install +ARG DEBIAN_FRONTEND=noninteractive +ARG PYTHONUNBUFFERED=1 +ARG PIP_DISABLE_PIP_VERSION_CHECK=1 +ARG PIP_ROOT_USER_ACTION=ignore +ARG AS_PIP_INDEX_URL="https://pypi.asci.synchrotron.org.au/root/pypi/+simple" +ARG POETRY_VIRTUALENVS_IN_PROJECT=true +ARG POETRY_VIRTUALENVS_CREATE=false +ARG POETRY_NO_INTERACTION=1 +ARG POETRY_VERSION=1.8.3 +ARG POETRY_DEPENDENCY_GROUPS=main +ARG PIPX_BIN_DIR="/usr/local/bin/" +ARG USE_EMOJI="false" +ENV HDF5_MASTER_FILE=/mnt/disk/dev_share/datasets_full/minimalInsulinMX1/030/testcrystal_0014_master.h5 + +# Install system packages +RUN < tuple[PydanticBaseSettingsSource, ...]: + # Restrict settings sources to environment variables only + return (env_settings, dotenv_settings) + + +@lru_cache() +def get_settings() -> Settings: + """Cache the settings, this allows the settings to be used in dependencies and + for overwriting in tests + """ + return Settings() # pyright: ignore[reportCallIssue] diff --git a/ansto_simplon_api/favicon.ico b/ansto_simplon_api/favicon.ico new file mode 100644 index 0000000000000000000000000000000000000000..ce5980c7d8d76e606347273e96d74efbfcfb9d4a GIT binary 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command from .routes.detector.config import router as detector_config from .routes.stream.config import router as stream_config +from .config import get_settings + +config = get_settings() + + +_description: str +with open(config.README, "r") as _file: + _description = _file.read() + + +app = FastAPI( + title=config.API_APP_NAME, + description=_description, + version=__version__, + docs_url=config.API_DOCS_URL, + redoc_url=config.API_REDOC_URL, + openapi_url=config.API_OPENAPI_URL, +) + + +@app.exception_handler(StarletteHTTPException) +async def custom_http_exception_handler(request, exc): + """Catch any HTTPException and log the error""" + logger.error(f"{str(exc)}\n{exc.detail}", exc_info=exc) + return await http_exception_handler(request, exc) + + +@app.get("/favicon.ico", include_in_schema=False) +async def favicon(): + return FileResponse(config.API_FAVICON) + -app = FastAPI() app.include_router(command) app.include_router(stream_config) app.include_router(detector_config) diff --git a/ansto_simplon_api/simulate_zmq_stream.py b/ansto_simplon_api/simulate_zmq_stream.py index 1273910..940d89e 100644 --- a/ansto_simplon_api/simulate_zmq_stream.py +++ b/ansto_simplon_api/simulate_zmq_stream.py @@ -4,7 +4,6 @@ import uuid from copy import deepcopy from datetime import datetime, timezone -from os import environ import bitshuffle import cbor2 @@ -17,6 +16,7 @@ from .parse_master_file import Parse from .schemas.configuration import DetectorConfiguration, ZMQStartMessage +from .config import get_settings logging.basicConfig( level=logging.INFO, @@ -24,6 +24,7 @@ datefmt="%d-%m-%Y %H:%M:%S", ) +config = get_settings() zmq_start_message = ZMQStartMessage() @@ -419,22 +420,9 @@ def start_stream(self) -> None: self.stream_frames(self.frames) self.stream_end_message() - -ZMQ_ADDRESS = environ.get("ZMQ_ADDRESS", "tcp://*:5555") -try: - HDF5_MASTER_FILE = environ["HDF5_MASTER_FILE"] -except KeyError as ex: - raise KeyError( - "No HDF5 master file found. Set the absolute path of the HDF5 master file via the " - "HDF5_MASTER_FILE environment variable" - ) from ex - -DELAY_BETWEEN_FRAMES = float(environ.get("DELAY_BETWEEN_FRAMES", "0.01")) -NUMBER_OF_DATA_FILES = int(environ.get("NUMBER_OF_DATA_FILES", "1")) - zmq_stream = ZmqStream( - address=ZMQ_ADDRESS, - hdf5_file_path=HDF5_MASTER_FILE, - delay_between_frames=DELAY_BETWEEN_FRAMES, - number_of_data_files=NUMBER_OF_DATA_FILES, + address=config.ZMQ_ADDRESS, + hdf5_file_path=config.HDF5_MASTER_FILE, + delay_between_frames=config.DELAY_BETWEEN_FRAMES, + number_of_data_files=config.NUMBER_OF_DATA_FILES, ) diff --git a/docker-compose.yml b/docker-compose.yml index d067a9a..bbb06de 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,17 +1,30 @@ version: '3.8' services: - mx-simplon-api: - build: . + mx_simplon_api: + build: + context: . + dockerfile: Dockerfile + target: debug_runtime container_name: mx-simplon-api environment: - ZMQ_ADDRESS: tcp://*:5555 + - "AS_API_DOCS_URL=/swagger" + - "AS_API_REDOC_URL=/docs" + - "AS_API_OPENAPI_URL=/openapi.json" + - "AS_ZMQ_ADDRESS=tcp://*:5555" #To access the masterfile, you can either copy it to the container by modifying # the dockerfile, or you can mount a volume containing the masterfile. - HDF5_MASTER_FILE: /path/to/HDF5_master_file - DELAY_BETWEEN_FRAMES: 0.0 # seconds - NUMBER_OF_DATA_FILES: 1 # 2 seems to be the maximum number of files we can load into memory (16M data) - NUMBER_OF_FRAMES_PER_TRIGGER: 30 + - "AS_HDF5_MASTER_FILE=/path/to/HDF5_master_file" + - "AS_DELAY_BETWEEN_FRAMES=0.0" # seconds + - "AS_NUMBER_OF_DATA_FILES=1" # 2 seems to be the maximum number of files we can load into memory (16M data) + - "AS_NUMBER_OF_FRAMES_PER_TRIGGER=30" ports: - "8000:8000" - "5555:5555" + hostname: mx_simplon_api + healthcheck: + test: curl --fail http://127.0.0.1:8854/healthz || exit 1 + interval: 10s + retries: 5 + start_period: 3s + timeout: 5s diff --git a/poetry.lock b/poetry.lock index a937c62..9bf22ce 100644 --- a/poetry.lock +++ b/poetry.lock @@ -430,6 +430,41 @@ files = [ {file = "distlib-0.3.8.tar.gz", hash = "sha256:1530ea13e350031b6312d8580ddb6b27a104275a31106523b8f123787f494f64"}, ] +[[package]] +name = "dnspython" +version = "2.6.1" +description = "DNS toolkit" +optional = false +python-versions = ">=3.8" +files = [ + {file = "dnspython-2.6.1-py3-none-any.whl", hash = "sha256:5ef3b9680161f6fa89daf8ad451b5f1a33b18ae8a1c6778cdf4b43f08c0a6e50"}, + {file = "dnspython-2.6.1.tar.gz", hash = "sha256:e8f0f9c23a7b7cb99ded64e6c3a6f3e701d78f50c55e002b839dea7225cff7cc"}, +] + +[package.extras] +dev = ["black (>=23.1.0)", "coverage (>=7.0)", "flake8 (>=7)", "mypy (>=1.8)", "pylint (>=3)", "pytest (>=7.4)", "pytest-cov (>=4.1.0)", "sphinx (>=7.2.0)", "twine (>=4.0.0)", "wheel (>=0.42.0)"] +dnssec = ["cryptography (>=41)"] +doh = ["h2 (>=4.1.0)", "httpcore (>=1.0.0)", "httpx (>=0.26.0)"] +doq = ["aioquic (>=0.9.25)"] +idna = ["idna (>=3.6)"] +trio = ["trio (>=0.23)"] +wmi = ["wmi (>=1.5.1)"] + +[[package]] +name = "email-validator" +version = "2.2.0" +description = "A robust email address syntax and deliverability validation library." +optional = false +python-versions = ">=3.8" +files = [ + {file = "email_validator-2.2.0-py3-none-any.whl", hash = "sha256:561977c2d73ce3611850a06fa56b414621e0c8faa9d66f2611407d87465da631"}, + {file = "email_validator-2.2.0.tar.gz", hash = "sha256:cb690f344c617a714f22e66ae771445a1ceb46821152df8e165c5f9a364582b7"}, +] + +[package.dependencies] +dnspython = ">=2.0.0" +idna = ">=2.0.0" + [[package]] name = "fastapi" version = "0.114.0" @@ -442,14 +477,38 @@ files = [ ] [package.dependencies] +email-validator = {version = ">=2.0.0", optional = true, markers = "extra == \"standard\""} +fastapi-cli = {version = ">=0.0.5", extras = ["standard"], optional = true, markers = "extra == \"standard\""} +httpx = {version = ">=0.23.0", optional = true, markers = "extra == \"standard\""} +jinja2 = {version = ">=2.11.2", optional = true, 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6dffb8cdf65c2ae465f038eb31fdca6a1a027dee Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Wed, 11 Sep 2024 09:55:15 +1000 Subject: [PATCH 4/9] Pre-commit fixes --- ansto_simplon_api/main.py | 2 +- ansto_simplon_api/simulate_zmq_stream.py | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/ansto_simplon_api/main.py b/ansto_simplon_api/main.py index 87b798e..28e5b00 100644 --- a/ansto_simplon_api/main.py +++ b/ansto_simplon_api/main.py @@ -5,11 +5,11 @@ from starlette.exceptions import HTTPException as StarletteHTTPException from . import __version__ +from .config import get_settings from .routes.ansto_endpoints.load_hdf5_files import router as ansto_endpoints from .routes.detector.command import router as command from .routes.detector.config import router as detector_config from .routes.stream.config import router as stream_config -from .config import get_settings config = get_settings() diff --git a/ansto_simplon_api/simulate_zmq_stream.py b/ansto_simplon_api/simulate_zmq_stream.py index 940d89e..45fa727 100644 --- a/ansto_simplon_api/simulate_zmq_stream.py +++ b/ansto_simplon_api/simulate_zmq_stream.py @@ -14,9 +14,9 @@ import zmq from tqdm import trange +from .config import get_settings from .parse_master_file import Parse from .schemas.configuration import DetectorConfiguration, ZMQStartMessage -from .config import get_settings logging.basicConfig( level=logging.INFO, @@ -420,6 +420,7 @@ def start_stream(self) -> None: self.stream_frames(self.frames) self.stream_end_message() + zmq_stream = ZmqStream( address=config.ZMQ_ADDRESS, hdf5_file_path=config.HDF5_MASTER_FILE, From a6f540e3babbc839247ae2dc0e880b9df447c510 Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Wed, 11 Sep 2024 09:56:25 +1000 Subject: [PATCH 5/9] Bump version --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index cf68337..88b3064 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "ansto-simplon-api" -version = "0.2.7" +version = "0.3.0" description = "Simulated simplon api" authors = [ "Francisco Hernandez Vivanco ", From d7f60b4fe60811c0df0b35aebc67fa25b2c8d733 Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Wed, 11 Sep 2024 10:50:48 +1000 Subject: [PATCH 6/9] Fix environment variable prefix --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 0cc9b85..4431c51 100644 --- a/Dockerfile +++ b/Dockerfile @@ -18,7 +18,7 @@ ARG POETRY_VERSION=1.8.3 ARG POETRY_DEPENDENCY_GROUPS=main ARG PIPX_BIN_DIR="/usr/local/bin/" ARG USE_EMOJI="false" -ENV HDF5_MASTER_FILE=/mnt/disk/dev_share/datasets_full/minimalInsulinMX1/030/testcrystal_0014_master.h5 +ENV AS_HDF5_MASTER_FILE=/mnt/disk/dev_share/datasets_full/minimalInsulinMX1/030/testcrystal_0014_master.h5 # Install system packages RUN < Date: Wed, 11 Sep 2024 12:58:40 +1000 Subject: [PATCH 7/9] Revert `Dockerfile` to previous format --- Dockerfile | 130 ++++++++--------------------------------------------- 1 file changed, 18 insertions(+), 112 deletions(-) diff --git a/Dockerfile b/Dockerfile index 4431c51..681677b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,119 +1,25 @@ -# syntax=docker/dockerfile:1.9 +FROM python:3.12 -# Global build arguments -ARG PYTHON_VERSION=3.12 +ENV AS_HDF5_MASTER_FILE=/share_data/datasets_full/minimalInsulinMX1/030/testcrystal_0014_master.h5 +ENV POETRY_VERSION=1.8.3 +# Install OS packages +USER root +RUN apt update && apt-get install -y gcc libhdf5-serial-dev -FROM python:${PYTHON_VERSION}-slim-bookworm AS base_runtime +# Create app runner user +RUN useradd -ms /bin/bash asuser +WORKDIR /home/asuser/ -ARG DEBIAN_FRONTEND=noninteractive -ARG PYTHONUNBUFFERED=1 -ARG PIP_DISABLE_PIP_VERSION_CHECK=1 -ARG PIP_ROOT_USER_ACTION=ignore -ARG AS_PIP_INDEX_URL="https://pypi.asci.synchrotron.org.au/root/pypi/+simple" -ARG POETRY_VIRTUALENVS_IN_PROJECT=true -ARG POETRY_VIRTUALENVS_CREATE=false -ARG POETRY_NO_INTERACTION=1 -ARG POETRY_VERSION=1.8.3 -ARG POETRY_DEPENDENCY_GROUPS=main -ARG PIPX_BIN_DIR="/usr/local/bin/" -ARG USE_EMOJI="false" -ENV AS_HDF5_MASTER_FILE=/mnt/disk/dev_share/datasets_full/minimalInsulinMX1/030/testcrystal_0014_master.h5 - -# Install system packages -RUN < Date: Wed, 11 Sep 2024 13:06:47 +1000 Subject: [PATCH 8/9] Update readme with information regarding FastAPI Swagger / ReDocs --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index aa45921..029cad2 100644 --- a/README.md +++ b/README.md @@ -43,6 +43,12 @@ Follow these steps to run the simulated SIMPLON API and ensure its proper functi ```bash uvicorn ansto_simplon_api.main:app ``` + > **Note:** The FastAPI Swagger / ReDoc endpoint documentation is disabled by default, to enable the documentation, please set the following environment variables. + > ```bash + > export AS_API_DOCS_URL=/swagger + > export AS_API_REDOC_URL=/docs + > export AS_API_OPENAPI_URL=/openapi.json + >``` 4. **Start the ZMQ Consumer** From 1bebebc3a825d02afb367bbca7b58222a3290289 Mon Sep 17 00:00:00 2001 From: Jacob Oldfield Date: Wed, 11 Sep 2024 13:41:35 +1000 Subject: [PATCH 9/9] Fix `docker-compose.yml` file --- docker-compose.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/docker-compose.yml b/docker-compose.yml index bbb06de..f0fbdd0 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -5,7 +5,6 @@ services: build: context: . dockerfile: Dockerfile - target: debug_runtime container_name: mx-simplon-api environment: - "AS_API_DOCS_URL=/swagger"