README.txt

Jan 10, 2012

Contents:

A free application for Sitesucker version 2.3.3 (http://www.sitesucker.us/)
was used to automatically download site content where appropriate.

[rna3dmotif]
homepage: http://rna3dmotif.lri.fr
download_page: http://rna3dmotif.lri.fr/CATALOGUE/index.html
download_method: sitesucker

[scor]
homepage: http://scor.berkeley.edu/
download_page: http://scor.berkeley.edu/pdbInfo.jsp?pdb=1s72
download_method: the results page was saved using browser

[rnajunction]
homepage: http://rnajunction.abcc.ncifcrf.gov/
download_page: http://rnajunction.abcc.ncifcrf.gov/advanced.php?jid=&n_strands=&lilley=&angle_range=&seq=&lr=2&dataset=C&pdb_id=1s72&author=&title=&exp_method=&page=1
download_method: the results page was saved using browser

[rloom]
homepage: http://rloom.mpimp-golm.mpg.de/
download_page: the website doesn't provide stable urls for results.
download_method: the results page was saved using browser. Pdb files were
downloaded using a custom python script (rloom_download_pdbs.py)

[cosmoss]
homepage: http://cossmos.slu.edu/
download_page: the website doesn't provide stable urls for results.
notes:  To download the results I set up the query as shown in the
'Query setup screenshot.jpeg', then extracted the links from the
'Download results' section of the results page (see
file 'Results screenshot.jpeg'), put them in the file 'results_links.html' and
used Sitesucker program to automatically follow these links.