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grubbers should look at inodes to avoid showing hardlinks as grubbers #78

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kopardev opened this issue Feb 13, 2024 · 0 comments · Fixed by #80
Closed

grubbers should look at inodes to avoid showing hardlinks as grubbers #78

kopardev opened this issue Feb 13, 2024 · 0 comments · Fixed by #80

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@kopardev
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eg.

184f1e884982a57628209bd4519d23a4#9260fd9e9d270d92465de9fe60a3d600 : 1 5853282304 "/data/Ambs_ATACseq/rawdata/Flowcell_AAACKJHHV/Sample_5B_MDAMB468_Nor/5B_MDAMB468_Nor_S6_R1_001.fastq.gz";f;5853227282;5853282304;54;438695724;2;854;37513;80073;kopardevn;Ambs_ATACseq;##"/data/Ambs_ATACseq/rawdata/project3/MDAMB468_Norm_2.R1.fastq.gz";f;5853227282;5853282304;54;1080224017;2;574;35499;80073;liuh;Ambs_ATACseq;##"/data/Ambs_ATACseq/rawdata/project2/MDAMB468_5B_Nor.R1.fastq.gz";f;5853227282;5853282304;54;438695724;2;854;37513;80073;kopardevn;Ambs_ATACseq;

shows the following grubbers

184f1e884982a57628209bd4519d23a4#9260fd9e9d270d92465de9fe60a3d600	1	5853282304	5853282304	"/data/Ambs_ATACseq/rawdata/Flowcell_AAACKJHHV/Sample_5B_MDAMB468_Nor/5B_MDAMB468_Nor_S6_R1_001.fastq.gz"	"/data/Ambs_ATACseq/rawdata/project2/MDAMB468_5B_Nor.R1.fastq.gz"

but

stat "/data/Ambs_ATACseq/rawdata/Flowcell_AAACKJHHV/Sample_5B_MDAMB468_Nor/5B_MDAMB468_Nor_S6_R1_001.fastq.gz"      "/data/Ambs_ATACseq/rawdata/project2/MDAMB468_5B_Nor.R1.fastq.gz"
  File: /data/Ambs_ATACseq/rawdata/Flowcell_AAACKJHHV/Sample_5B_MDAMB468_Nor/5B_MDAMB468_Nor_S6_R1_001.fastq.gz
  Size: 5853227282	Blocks: 11432192   IO Block: 4194304 regular file
Device: 34h/52d	Inode: 438695724   Links: 2
Access: (0774/-rwxrwxr--)  Uid: (37513/kopardevn)   Gid: (80073/Ambs_ATACseq)
Context: system_u:object_r:unlabeled_t:s0
Access: 2024-02-13 17:42:16.430670203 -0500
Modify: 2021-10-13 16:38:09.297098673 -0400
Change: 2024-02-09 02:16:28.062677922 -0500
 Birth: -
  File: /data/Ambs_ATACseq/rawdata/project2/MDAMB468_5B_Nor.R1.fastq.gz
  Size: 5853227282	Blocks: 11432192   IO Block: 4194304 regular file
Device: 34h/52d	Inode: 438695724   Links: 2
Access: (0774/-rwxrwxr--)  Uid: (37513/kopardevn)   Gid: (80073/Ambs_ATACseq)
Context: system_u:object_r:unlabeled_t:s0
Access: 2024-02-13 17:42:16.430670203 -0500
Modify: 2021-10-13 16:38:09.297098673 -0400
Change: 2024-02-09 02:16:28.062677922 -0500
 Birth: -

They have the same inode!

kopardev added a commit that referenced this issue Feb 14, 2024
@kopardev kopardev mentioned this issue Feb 14, 2024
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