From 5bdf216e3be0045edc95bf00352e456cb538febb Mon Sep 17 00:00:00 2001 From: Andrea Date: Wed, 16 Oct 2024 16:35:01 +0200 Subject: [PATCH] default peak_outlier_value set to 0 --- config/SHIFTS.ini | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config/SHIFTS.ini b/config/SHIFTS.ini index 8026c97..30b50c5 100644 --- a/config/SHIFTS.ini +++ b/config/SHIFTS.ini @@ -64,7 +64,7 @@ score_column = xcorr # Name of column containing score (case-sensitive peak_column = PeakAssignation # Name of column containing the peak/orphan labels (case-sensitive) dm_region_limit = -56 # Deltamass region limit for Global FDR. Two regions will be created: DM equal to or above and DM below this value dm_column = deltaMass # Name of column containing deltamass for region limits (case-sensitive) -peak_outlier_value = 1 # Peak FDR value to be assigned to orphans (default=1) +peak_outlier_value = 0 # Peak FDR value to be assigned to orphans (default=1) global_threshold = 0.05 # Maximum global FDR value local_threshold = 0.01 # Maximum local FDR value peak_threshold = 0.01 # Maximum peak FDR value