diff --git a/config/SHIFTS.ini b/config/SHIFTS.ini index 30b50c5..2558d3b 100644 --- a/config/SHIFTS.ini +++ b/config/SHIFTS.ini @@ -64,11 +64,11 @@ score_column = xcorr # Name of column containing score (case-sensitive peak_column = PeakAssignation # Name of column containing the peak/orphan labels (case-sensitive) dm_region_limit = -56 # Deltamass region limit for Global FDR. Two regions will be created: DM equal to or above and DM below this value dm_column = deltaMass # Name of column containing deltamass for region limits (case-sensitive) -peak_outlier_value = 0 # Peak FDR value to be assigned to orphans (default=1) +peak_outlier_value = 0 # Peak FDR value to be assigned to orphans (default=0) global_threshold = 0.05 # Maximum global FDR value local_threshold = 0.01 # Maximum local FDR value peak_threshold = 0.01 # Maximum peak FDR value [Logging] create_log = 1 # Create log file, 0=no 1=yes -create_ini = 0 # Create copy of INI file in input directory, 0=no 1=yes (specifying custom parameters in the command line will always create a copy of INI file) \ No newline at end of file +create_ini = 0 # Create copy of INI file in input directory, 0=no 1=yes (specifying custom parameters in the command line will always create a copy of INI file)