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DESCRIPTION
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Package: epiCHAOS
Title: Quantify Epigenetic Heterogeneity using Single-Cell Epigenomics Data
Version: 0.0.0.9000
Authors@R:
person("Katherine", "Kelly", , "katherine.kelly@dkfz.de", role = c("aut", "cre"),
comment = c(ORCID = "YOUR-ORCID-ID"))
Description: epiCHAOS provides a metric for quantifying epigenetic heterogeneity within a
given cluster or group of cells using single cell Assay for Transposase Accessible Chromatin
(ATAC)-seq or other single cell epigenomics data in binary format.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests:
testthat (>= 3.0.0),
S4Vectors,
knitr,
rmarkdown
Config/testthat/edition: 3
Imports: jaccard, corrr, magrittr, plyr, ggplot2, stringr, IRanges, GenomicRanges, msigdbr, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, GenomicFeatures
Depends:
R (>= 2.10)
LazyData: true
LazyDataCompression: xz
VignetteBuilder: knitr