From c42d550de0727b816a0c8b14261df3a14bfe8cd9 Mon Sep 17 00:00:00 2001
From: treerink <thomas.reerink.knmi@gmail.com>
Date: Mon, 5 Feb 2024 13:55:59 +0100
Subject: [PATCH] Add the co2box variables to the request and include them in
 the optimism genecec flow #792 #785.

---
 .../optimesm-request-EC-EARTH-CC-varlist.json      | 14 +++++++++++++-
 ece2cmor3/scripts/add-variables-for-co2box.sh      |  3 ++-
 .../scripts/genecec-for-individual-experiments.sh  |  1 +
 3 files changed, 16 insertions(+), 2 deletions(-)

diff --git a/ece2cmor3/resources/miscellaneous-data-requests/optimesm-request/optimesm-request-EC-EARTH-CC-varlist.json b/ece2cmor3/resources/miscellaneous-data-requests/optimesm-request/optimesm-request-EC-EARTH-CC-varlist.json
index 05a6759f..3ce7e181 100644
--- a/ece2cmor3/resources/miscellaneous-data-requests/optimesm-request/optimesm-request-EC-EARTH-CC-varlist.json
+++ b/ece2cmor3/resources/miscellaneous-data-requests/optimesm-request/optimesm-request-EC-EARTH-CC-varlist.json
@@ -492,5 +492,17 @@
             "snmassacrossline"
         ]
     },
-    "tm5": {}
+    "tm5": {},
+    "co2box": {
+        "Amon": [
+            "co2mass"
+        ],
+        "Emon": [
+            "co2s"
+        ],
+        "day": [
+            "co2s",
+            "co2mass"
+        ]
+    }
 }
diff --git a/ece2cmor3/scripts/add-variables-for-co2box.sh b/ece2cmor3/scripts/add-variables-for-co2box.sh
index 81463d15..df8755a3 100755
--- a/ece2cmor3/scripts/add-variables-for-co2box.sh
+++ b/ece2cmor3/scripts/add-variables-for-co2box.sh
@@ -73,7 +73,8 @@ if [ "$#" -eq 0 ]; then
 
   echo
   echo " $0 reports:"
-  echo "  The adjusted file is:  ${table_path}/${table_file_day}"
+  echo "  The adjusted file is:"
+  echo "   ${table_path}/${table_file_day}"
   echo "  Which is part of a nested repository, therefore to view the diff, run:"
   echo "  cd ${table_path}; git diff; cd -"
   echo
diff --git a/ece2cmor3/scripts/genecec-for-individual-experiments.sh b/ece2cmor3/scripts/genecec-for-individual-experiments.sh
index 4ee07a72..e46167b1 100755
--- a/ece2cmor3/scripts/genecec-for-individual-experiments.sh
+++ b/ece2cmor3/scripts/genecec-for-individual-experiments.sh
@@ -79,6 +79,7 @@ if [ "$#" -eq 5 ]; then
   # optimesm only:
   if [ ${data_request_file##*/} = 'optimesm-request-EC-EARTH-CC-varlist.json' ]; then
    ./add-lpjg-cc-diagnostics.sh
+   ./add-variables-for-co2box.sh
   fi
 
   rm -rf   ${output_dir}