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CXcircuits

FlyBrainLab Circuit Library for the Central Complex

Installation

Note: the package must be installed both in the environment hosting the FlyBrainLab user-side components and in the environment hosting the backend servers. For example, if you are running FlyBrainLab using the full installation or Docker image, you only need to install it in the ffbo environment since both FlyBrainlab user-side components and backend servers are installed within the same environment. However, if you are running the FlyBrainLab user-side components on a separate machine, you must install this package in both places.

git clone https://github.com/FlyBrainLab/CXcircuits.git
cd CXcircuits
python setup.py develop

Loading Models to NeuroArch Database

Models are store in each of the subdirectories in the folder models. Go into each subdirectories and run

python load_database.py

Each model is accompanied by a notebook in the notebooks/elife20 directory. After loading the database, open the corresponding notebook in FlyBrainLab and run through the notebook.