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A Quarto shortcode extension to embed download buttons (to download embedded image/pdf/txt/csv files) in HTML document

Lua 50 Updated Apr 19, 2023

Index of lessons on elixir-europe-training

TeX 1 Updated Feb 23, 2025

Flow cytometry data analysis with R

1 Updated Dec 14, 2023

Nextflow AWS Parallel Cluster Configuration

Shell 4 4 Updated Apr 4, 2023

Analyzing and visualizing KEGG information using the grammar of graphics

R 224 16 Updated Jan 29, 2025

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

161 16 Updated Dec 4, 2024

Command line tool for Wave containers provisioning service

Java 14 3 Updated Feb 5, 2025

Repository of the FAIR Biomedical Research Software (FAIR-BioRS) guidelines

8 2 Updated Jul 22, 2023

A metadata commons to store research software metadata

HTML 40 30 Updated Feb 23, 2025

Single cell trajectory detection

Jupyter Notebook 236 53 Updated Nov 30, 2024

Aria is Your AI Research Assistant Powered by GPT Large Language Models

JavaScript 1,246 78 Updated Feb 18, 2025

A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

PHP 37 2 Updated Feb 5, 2025

Tandem repeat genotyping and visualization from PacBio HiFi data

Rust 114 10 Updated Feb 7, 2025

Structural variant toolkit for VCFs

Python 339 49 Updated Feb 25, 2025

Fast and accurate de novo assembler for long reads

C 380 53 Updated May 10, 2024

CRAN as Ubuntu Binaries

R 266 17 Updated Feb 27, 2025

Download FASTQ files from SRA or ENA repositories.

Python 303 24 Updated Oct 20, 2024

Template for ELIXIR Lessons

TeX 3 5 Updated Feb 23, 2025

pipeline for dog WGS alignment

Python 13 5 Updated Jun 27, 2023

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of m…

HTML 98 25 Updated Feb 19, 2025

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Python 355 55 Updated Dec 21, 2024

gpttools extends gptstudio for package development to help you document code, write tests, or even explain code

R 294 27 Updated Nov 4, 2024

R package to print maps, draw on them, and scan them back in

R 90 7 Updated Feb 7, 2025

Shiny Interactive Web Apps for Single-Cell Data

R 172 58 Updated Feb 12, 2024
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