diff --git a/.yamlfmt b/.yamlfmt new file mode 100644 index 0000000000..48f1d3be7f --- /dev/null +++ b/.yamlfmt @@ -0,0 +1,4 @@ +formatter: + type: basic + include_document_start: true + max_line_length: 79 diff --git a/assets/mixs-schema-formatting-variants/.yamlfmt b/assets/mixs-schema-formatting-variants/.yamlfmt new file mode 100644 index 0000000000..48f1d3be7f --- /dev/null +++ b/assets/mixs-schema-formatting-variants/.yamlfmt @@ -0,0 +1,4 @@ +formatter: + type: basic + include_document_start: true + max_line_length: 79 diff --git a/assets/mixs-schema-formatting-variants/README.md b/assets/mixs-schema-formatting-variants/README.md new file mode 100644 index 0000000000..f1ef177612 --- /dev/null +++ b/assets/mixs-schema-formatting-variants/README.md @@ -0,0 +1,19 @@ +poetry run python src/scripts/describe_enums_by_slots_using.py --schema-file src/mixs/schema/mixs.yaml --output-file assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions.yaml + +cp src/mixs/schema/mixs.yaml assets/mixs-schema-formatting-variants/original.yaml + +poetry run gen-linkml --format yaml --no-materialize-attributes --materialize-patterns --no-mergeimports src/mixs/schema/mixs.yaml > assets/mixs-schema-formatting-variants/original-regenerated.yaml + +cp src/mixs/schema/mixs.yaml assets/mixs-schema-formatting-variants/pycharm-auto.yaml # then open in pycharm, select all and hit control-alt-l aka command-option-l and save + +yq eval '(.. | select(has("from_schema")) | .from_schema) style="" | del(.. | select(has("from_schema")).from_schema)' original-regenerated.yaml |\ + yq eval '.prefixes |= map_values(.prefix_reference)' |\ + yq eval '.settings |= map_values(.setting_value)' |\ + yq eval 'del(.classes.[].name)' |\ + yq eval 'del(.classes.[].slot_usage.[].name)' |\ + yq eval 'del(.enums.[].name)' |\ + yq eval 'del(.enums.[].permissible_values.[].text)' |\ + yq eval 'del(.slots.[].domain)' |\ + yq eval 'del(.slots.[].name)' |\ + yq eval 'del(.source_file)' |\ + yq eval 'del(.subsets.[].name)' | cat > original-regenerated-reduced.yaml \ No newline at end of file diff --git a/assets/mixs-schema-formatting-variants/original.yaml b/assets/mixs-schema-formatting-variants/mixs_standardized.yaml similarity index 86% rename from assets/mixs-schema-formatting-variants/original.yaml rename to assets/mixs-schema-formatting-variants/mixs_standardized.yaml index 5492782ce8..3a76e31747 100644 --- a/assets/mixs-schema-formatting-variants/original.yaml +++ b/assets/mixs-schema-formatting-variants/mixs_standardized.yaml @@ -1,7 +1,11 @@ --- name: mixs -description: >- - This file contains a YAML-formatted specification of the Minimum Information about any (x) Sequence (MIxS) standard, generated using LinkML (https://linkml.io/linkml/). This file is released by the Genomic Standards Consortium (GSC; https://www.gensc.org/) for use by anyone handling data or information about biological sequences. This file is also used as an authoritative 'source of truth' to generate downstream GSC artifacts, available here: https://github.com/GenomicsStandardsConsortium/mixs/tree/main/project +description: 'This file contains a YAML-formatted specification of the Minimum Information + about any (x) Sequence (MIxS) standard, generated using LinkML (https://linkml.io/linkml/). + This file is released by the Genomic Standards Consortium (GSC; https://www.gensc.org/) + for use by anyone handling data or information about biological sequences. This + file is also used as an authoritative ''source of truth'' to generate downstream + GSC artifacts, available here: https://github.com/GenomicsStandardsConsortium/mixs/tree/main/project' comments: - 'slot titles that are associated with more than one slot name/SCN: host sex' source: https://github.com/GenomicsStandardsConsortium/mixs/raw/issue-610-temp-mixs-xlsx-home/mixs/excel/mixs_v6.xlsx @@ -18,285 +22,285 @@ prefixes: default_prefix: MIXS default_range: string subsets: - combination_classes: - sequencing: - environment: - nucleic acid sequence source: - investigation: + combination_classes: {} + sequencing: {} + environment: {} + nucleic acid sequence source: {} + investigation: {} enums: BiolStatEnum: permissible_values: - breeder's line: - clonal selection: - hybrid: - inbred line: - mutant: - natural: - semi-natural: - wild: + breeder's line: {} + clonal selection: {} + hybrid: {} + inbred line: {} + mutant: {} + natural: {} + semi-natural: {} + wild: {} AssemblyQualEnum: permissible_values: - Finished genome: - High-quality draft genome: - Medium-quality draft genome: - Low-quality draft genome: - Genome fragment(s): + Finished genome: {} + High-quality draft genome: {} + Medium-quality draft genome: {} + Low-quality draft genome: {} + Genome fragment(s): {} AeroStrucEnum: permissible_values: - glider: - plane: + glider: {} + plane: {} AnimalBodyCondEnum: permissible_values: - normal: - over conditioned: - under conditioned: + normal: {} + over conditioned: {} + under conditioned: {} AnimalSexEnum: permissible_values: - castrated female: - castrated male: - intact female: - intact male: + castrated female: {} + castrated male: {} + intact female: {} + intact male: {} ArchStrucEnum: permissible_values: - building: - home: - shed: + building: {} + home: {} + shed: {} BinParamEnum: permissible_values: - codon usage: - combination: - coverage: - homology search: - kmer: + codon usage: {} + combination: {} + coverage: {} + homology search: {} + kmer: {} BioticRelationshipEnum: permissible_values: - commensalism: - free living: - mutualism: - parasitism: - symbiotic: + commensalism: {} + free living: {} + mutualism: {} + parasitism: {} + symbiotic: {} BuildingSettingEnum: permissible_values: - exurban: - rural: - suburban: - urban: + exurban: {} + rural: {} + suburban: {} + urban: {} BuildDocsEnum: permissible_values: - building information model: - commissioning report: - complaint logs: - contract administration: - cost estimate: - janitorial schedules or logs: - maintenance plans: - schedule: - sections: - shop drawings: - submittals: - ventilation system: - windows: + building information model: {} + commissioning report: {} + complaint logs: {} + contract administration: {} + cost estimate: {} + janitorial schedules or logs: {} + maintenance plans: {} + schedule: {} + sections: {} + shop drawings: {} + submittals: {} + ventilation system: {} + windows: {} BuildOccupTypeEnum: permissible_values: - airport: - commercial: - health care: - high rise: - low rise: - market: - office: - residence: - residential: - restaurant: - school: - sports complex: - wood framed: + airport: {} + commercial: {} + health care: {} + high rise: {} + low rise: {} + market: {} + office: {} + residence: {} + residential: {} + restaurant: {} + school: {} + sports complex: {} + wood framed: {} BuiltStrucSetEnum: permissible_values: - rural: - urban: + rural: {} + urban: {} CeilFinishMatEnum: permissible_values: - PVC: - drywall: - fiberglass: - metal: - mineral fibre: - mineral wool/calcium silicate: - plasterboard: - stucco: - tiles: - wood: + PVC: {} + drywall: {} + fiberglass: {} + metal: {} + mineral fibre: {} + mineral wool/calcium silicate: {} + plasterboard: {} + stucco: {} + tiles: {} + wood: {} CeilStrucEnum: permissible_values: - concrete: - wood frame: + concrete: {} + wood frame: {} CeilTypeEnum: permissible_values: - barrel-shaped: - cathedral: - coffered: - concave: - cove: - dropped: - stretched: + barrel-shaped: {} + cathedral: {} + coffered: {} + concave: {} + cove: {} + dropped: {} + stretched: {} ComplApprEnum: permissible_values: - marker gene: - other: - reference based: + marker gene: {} + other: {} + reference based: {} ContamScreenInputEnum: permissible_values: - contigs: - reads: + contigs: {} + reads: {} CultResultEnum: permissible_values: - absent: - active: - inactive: - negative: - 'no': - positive: - present: - 'yes': + absent: {} + active: {} + inactive: {} + negative: {} + 'no': {} + positive: {} + present: {} + 'yes': {} DeposEnvEnum: permissible_values: - Continental - Aeolian: - Continental - Alluvial: - Continental - Fluvial: - Continental - Lacustrine: - Marine - Deep: - Marine - Reef: - Marine - Shallow: - Other - Evaporite: - Other - Glacial: - Other - Volcanic: - Transitional - Beach: - Transitional - Deltaic: - Transitional - Lagoonal: - Transitional - Lake: - Transitional - Tidal: - other: + Continental - Aeolian: {} + Continental - Alluvial: {} + Continental - Fluvial: {} + Continental - Lacustrine: {} + Marine - Deep: {} + Marine - Reef: {} + Marine - Shallow: {} + Other - Evaporite: {} + Other - Glacial: {} + Other - Volcanic: {} + Transitional - Beach: {} + Transitional - Deltaic: {} + Transitional - Lagoonal: {} + Transitional - Lake: {} + Transitional - Tidal: {} + other: {} DominantHandEnum: permissible_values: - ambidextrous: - left: - right: + ambidextrous: {} + left: {} + right: {} DoorCompTypeEnum: permissible_values: - metal covered: - revolving: - sliding: - telescopic: + metal covered: {} + revolving: {} + sliding: {} + telescopic: {} DoorDirectEnum: permissible_values: - inward: - outward: - sideways: + inward: {} + outward: {} + sideways: {} DoorMatEnum: permissible_values: - aluminum: - cellular PVC: - engineered plastic: - fiberboard: - fiberglass: - metal: - thermoplastic alloy: - vinyl: - wood: - wood/plastic composite: + aluminum: {} + cellular PVC: {} + engineered plastic: {} + fiberboard: {} + fiberglass: {} + metal: {} + thermoplastic alloy: {} + vinyl: {} + wood: {} + wood/plastic composite: {} DoorMoveEnum: permissible_values: - collapsible: - folding: - revolving: - rolling shutter: - sliding: - swinging: + collapsible: {} + folding: {} + revolving: {} + rolling shutter: {} + sliding: {} + swinging: {} DoorTypeEnum: permissible_values: - composite: - metal: - wooden: + composite: {} + metal: {} + wooden: {} DoorTypeMetalEnum: permissible_values: - collapsible: - corrugated steel: - hollow: - rolling shutters: - steel plate: + collapsible: {} + corrugated steel: {} + hollow: {} + rolling shutters: {} + steel plate: {} DrainageClassEnum: permissible_values: - excessively drained: - moderately well: - poorly: - somewhat poorly: - very poorly: - well: + excessively drained: {} + moderately well: {} + poorly: {} + somewhat poorly: {} + very poorly: {} + well: {} DrawingsEnum: permissible_values: - as built: - bid: - building navigation map: - construction: - design: - diagram: - operation: - sketch: + as built: {} + bid: {} + building navigation map: {} + construction: {} + design: {} + diagram: {} + operation: {} + sketch: {} ExtrWeatherEventEnum: permissible_values: - drought: - dust storm: - extreme cold: - extreme heat: - flood: - frost: - hail: - high precipitation: - high winds: + drought: {} + dust storm: {} + extreme cold: {} + extreme heat: {} + flood: {} + frost: {} + hail: {} + high precipitation: {} + high winds: {} FacilityTypeEnum: permissible_values: - ambient storage: - caterer-catering point: - distribution: - frozen storage: - importer-broker: - interstate conveyance: - labeler-relabeler: - manufacturing-processing: - packaging: - refrigerated storage: - storage: + ambient storage: {} + caterer-catering point: {} + distribution: {} + frozen storage: {} + importer-broker: {} + interstate conveyance: {} + labeler-relabeler: {} + manufacturing-processing: {} + packaging: {} + refrigerated storage: {} + storage: {} FaoClassEnum: permissible_values: - Acrisols: - Alisols: - Andosols: - Anthrosols: - Arenosols: - Calcisols: - Cambisols: - Chernozems: - Cryosols: - Durisols: - Ferralsols: - Fluvisols: - Gleysols: + Acrisols: {} + Alisols: {} + Andosols: {} + Anthrosols: {} + Arenosols: {} + Calcisols: {} + Cambisols: {} + Chernozems: {} + Cryosols: {} + Durisols: {} + Ferralsols: {} + Fluvisols: {} + Gleysols: {} Greyzems: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 - Gypsisols: - Histosols: - Kastanozems: + Gypsisols: {} + Histosols: {} + Kastanozems: {} Lithosols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 - Leptosols: - Lixisols: - Luvisols: - Nitosols: - Phaeozems: - Planosols: - Plinthosols: - Podzols: + Leptosols: {} + Lixisols: {} + Luvisols: {} + Nitosols: {} + Phaeozems: {} + Planosols: {} + Plinthosols: {} + Podzols: {} Podzoluvisols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Rankers: @@ -305,868 +309,865 @@ enums: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Rendzinas: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 - Solonchaks: - Solonetz: - Stagnosols: - Technosols: - Umbrisols: - Vertisols: + Solonchaks: {} + Solonetz: {} + Stagnosols: {} + Technosols: {} + Umbrisols: {} + Vertisols: {} Yermosols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 FarmWaterSourceEnum: permissible_values: - brackish: - canal: - collected rainwater: - ditch: - estuary: - freshwater: - lake: - manmade: - melt pond: - municipal: - natural: - pond: - reservior: - river: - saline: - storage tank: - stream: - well: + brackish: {} + canal: {} + collected rainwater: {} + ditch: {} + estuary: {} + freshwater: {} + lake: {} + manmade: {} + melt pond: {} + municipal: {} + natural: {} + pond: {} + reservior: {} + river: {} + saline: {} + storage tank: {} + stream: {} + well: {} FilterTypeEnum: permissible_values: - HEPA: - chemical air filter: - electrostatic: - gas-phase or ultraviolet air treatments: - low-MERV pleated media: - particulate air filter: + HEPA: {} + chemical air filter: {} + electrostatic: {} + gas-phase or ultraviolet air treatments: {} + low-MERV pleated media: {} + particulate air filter: {} FireplaceTypeEnum: permissible_values: - gas burning: - wood burning: + gas burning: {} + wood burning: {} FloorStrucEnum: permissible_values: - balcony: - concrete: - floating floor: - glass floor: - raised floor: - sprung floor: - wood-framed: + balcony: {} + concrete: {} + floating floor: {} + glass floor: {} + raised floor: {} + sprung floor: {} + wood-framed: {} FloorWaterMoldEnum: permissible_values: - bulging walls: - ceiling discoloration: - condensation: - floor discoloration: - mold odor: - peeling paint or wallpaper: - wall discoloration: - water stains: - wet floor: + bulging walls: {} + ceiling discoloration: {} + condensation: {} + floor discoloration: {} + mold odor: {} + peeling paint or wallpaper: {} + wall discoloration: {} + water stains: {} + wet floor: {} FoodCleanProcEnum: permissible_values: - drum and drain: - manual spinner: - rinsed with sanitizer solution: - rinsed with water: - scrubbed with brush: - scrubbed with hand: - soaking: + drum and drain: {} + manual spinner: {} + rinsed with sanitizer solution: {} + rinsed with water: {} + scrubbed with brush: {} + scrubbed with hand: {} + soaking: {} FoodTraceListEnum: permissible_values: - cheeses-other than hard cheeses: - crustaceans: - cucumbers: - finfish-including smoked finfish: - fruits and vegetables-fresh cut: - herbs-fresh: - leafy greens-including fresh cut leafy greens: - melons: - mollusks-bivalves: - nut butter: - peppers: - ready to eat deli salads: - shell eggs: - sprouts: - tomatoes: - tropical tree fruits: + cheeses-other than hard cheeses: {} + crustaceans: {} + cucumbers: {} + finfish-including smoked finfish: {} + fruits and vegetables-fresh cut: {} + herbs-fresh: {} + leafy greens-including fresh cut leafy greens: {} + melons: {} + mollusks-bivalves: {} + nut butter: {} + peppers: {} + ready to eat deli salads: {} + shell eggs: {} + sprouts: {} + tomatoes: {} + tropical tree fruits: {} FreqCleanEnum: permissible_values: - Annually: - Daily: - Monthly: - Quarterly: - Weekly: - other: + Annually: {} + Daily: {} + Monthly: {} + Quarterly: {} + Weekly: {} + other: {} FurnitureEnum: permissible_values: - cabinet: - chair: - desks: + cabinet: {} + chair: {} + desks: {} GenderRestroomEnum: permissible_values: - all gender: - female: - gender neutral: - male: - male and female: - unisex: + all gender: {} + female: {} + gender neutral: {} + male: {} + male and female: {} + unisex: {} GrowthHabitEnum: permissible_values: - erect: - prostrate: - semi-erect: - spreading: + erect: {} + prostrate: {} + semi-erect: {} + spreading: {} HandidnessEnum: permissible_values: - ambidexterity: - left handedness: - mixed-handedness: - right handedness: + ambidexterity: {} + left handedness: {} + mixed-handedness: {} + right handedness: {} HcrEnum: permissible_values: - Coalbed: - Gas Reservoir: - Oil Reservoir: - Oil Sand: - Shale: - Tight Gas Reservoir: - Tight Oil Reservoir: - other: + Coalbed: {} + Gas Reservoir: {} + Oil Reservoir: {} + Oil Sand: {} + Shale: {} + Tight Gas Reservoir: {} + Tight Oil Reservoir: {} + other: {} HcProducedEnum: permissible_values: - Bitumen: - Coalbed Methane: - Gas: - Gas-Condensate: - Oil: - other: + Bitumen: {} + Coalbed Methane: {} + Gas: {} + Gas-Condensate: {} + Oil: {} + other: {} HeatCoolTypeEnum: permissible_values: - forced air system: - heat pump: - radiant system: - steam forced heat: - wood stove: + forced air system: {} + heat pump: {} + radiant system: {} + steam forced heat: {} + wood stove: {} HeatSysDelivMethEnum: permissible_values: - conductive: - radiant: + conductive: {} + radiant: {} HostCellularLocEnum: permissible_values: - extracellular: - intracellular: - not determined: + extracellular: {} + intracellular: {} + not determined: {} HostDependenceEnum: permissible_values: - facultative: - obligate: + facultative: {} + obligate: {} HostPredApprEnum: permissible_values: - CRISPR spacer match: - co-occurrence: - combination: - host sequence similarity: - kmer similarity: - other: - provirus: + CRISPR spacer match: {} + co-occurrence: {} + combination: {} + host sequence similarity: {} + kmer similarity: {} + other: {} + provirus: {} HostSpecificityEnum: permissible_values: - family-specific: - generalist: - genus-specific: - species-specific: + family-specific: {} + generalist: {} + genus-specific: {} + species-specific: {} IndoorSpaceEnum: permissible_values: - bathroom: - bedroom: - elevator: - foyer: - hallway: - kitchen: - locker room: - office: + bathroom: {} + bedroom: {} + elevator: {} + foyer: {} + hallway: {} + kitchen: {} + locker room: {} + office: {} IndoorSurfEnum: permissible_values: - cabinet: - ceiling: - counter top: - door: - shelving: - vent cover: - wall: - window: + cabinet: {} + ceiling: {} + counter top: {} + door: {} + shelving: {} + vent cover: {} + wall: {} + window: {} LibLayoutEnum: permissible_values: - other: - paired: - single: - vector: + other: {} + paired: {} + single: {} + vector: {} LightTypeEnum: permissible_values: - desk lamp: - electric light: - fluorescent lights: - natural light: - none: + desk lamp: {} + electric light: {} + fluorescent lights: {} + natural light: {} + none: {} LithologyEnum: permissible_values: - Basement: - Chalk: - Chert: - Coal: - Conglomerate: - Diatomite: - Dolomite: - Limestone: - Sandstone: - Shale: - Siltstone: - Volcanic: - other: + Basement: {} + Chalk: {} + Chert: {} + Coal: {} + Conglomerate: {} + Diatomite: {} + Dolomite: {} + Limestone: {} + Sandstone: {} + Shale: {} + Siltstone: {} + Volcanic: {} + other: {} MagCovSoftwareEnum: permissible_values: - bbmap: - bowtie: - bwa: - other: + bbmap: {} + bowtie: {} + bwa: {} + other: {} MechStrucEnum: permissible_values: - boat: - bus: - car: - carriage: - coach: - elevator: - escalator: - subway: - train: + boat: {} + bus: {} + car: {} + carriage: {} + coach: {} + elevator: {} + escalator: {} + subway: {} + train: {} ModeTransmissionEnum: permissible_values: - horizontal:castrator: - horizontal:directly transmitted: - horizontal:micropredator: - horizontal:parasitoid: - horizontal:trophically transmitted: - horizontal:vector transmitted: - vertical: + horizontal:castrator: {} + horizontal:directly transmitted: {} + horizontal:micropredator: {} + horizontal:parasitoid: {} + horizontal:trophically transmitted: {} + horizontal:vector transmitted: {} + vertical: {} NegContTypeEnum: permissible_values: - DNA-free PCR mix: - distilled water: - empty collection device: - empty collection tube: - phosphate buffer: - sterile swab: - sterile syringe: + DNA-free PCR mix: {} + distilled water: {} + empty collection device: {} + empty collection tube: {} + phosphate buffer: {} + sterile swab: {} + sterile syringe: {} OccupDocumentEnum: permissible_values: - automated count: - estimate: - manual count: - videos: + automated count: {} + estimate: {} + manual count: {} + videos: {} OxyStatSampEnum: permissible_values: - aerobic: - anaerobic: - other: + aerobic: {} + anaerobic: {} + other: {} PlantReprodCropEnum: permissible_values: - plant cutting: - pregerminated seed: - ratoon: - seed: - seedling: - whole mature plant: + plant cutting: {} + pregerminated seed: {} + ratoon: {} + seed: {} + seedling: {} + whole mature plant: {} PlantSexEnum: permissible_values: - Androdioecious: - Androecious: - Androgynomonoecious: - Androgynous: - Andromonoecious: - Bisexual: - Dichogamous: - Diclinous: - Dioecious: - Gynodioecious: - Gynoecious: - Gynomonoecious: - Hermaphroditic: - Imperfect: - Monoclinous: - Monoecious: - Perfect: - Polygamodioecious: - Polygamomonoecious: - Polygamous: - Protandrous: - Protogynous: - Subandroecious: - Subdioecious: - Subgynoecious: - Synoecious: - Trimonoecious: - Trioecious: - Unisexual: + Androdioecious: {} + Androecious: {} + Androgynomonoecious: {} + Androgynous: {} + Andromonoecious: {} + Bisexual: {} + Dichogamous: {} + Diclinous: {} + Dioecious: {} + Gynodioecious: {} + Gynoecious: {} + Gynomonoecious: {} + Hermaphroditic: {} + Imperfect: {} + Monoclinous: {} + Monoecious: {} + Perfect: {} + Polygamodioecious: {} + Polygamomonoecious: {} + Polygamous: {} + Protandrous: {} + Protogynous: {} + Subandroecious: {} + Subdioecious: {} + Subgynoecious: {} + Synoecious: {} + Trimonoecious: {} + Trioecious: {} + Unisexual: {} PredGenomeStrucEnum: permissible_values: - non-segmented: - segmented: - undetermined: + non-segmented: {} + segmented: {} + undetermined: {} ProfilePositionEnum: permissible_values: - backslope: - footslope: - shoulder: - summit: - toeslope: + backslope: {} + footslope: {} + shoulder: {} + summit: {} + toeslope: {} QuadPosEnum: permissible_values: - East side: - North side: - South side: - West side: + East side: {} + North side: {} + South side: {} + West side: {} RelSampLocEnum: permissible_values: - center of car: - edge of car: - under a seat: + center of car: {} + edge of car: {} + under a seat: {} RelToOxygenEnum: permissible_values: - aerobe: - anaerobe: - facultative: - microaerophilic: - microanaerobe: - obligate aerobe: - obligate anaerobe: + aerobe: {} + anaerobe: {} + facultative: {} + microaerophilic: {} + microanaerobe: {} + obligate aerobe: {} + obligate anaerobe: {} RoomCondtEnum: permissible_values: - damaged: - needs repair: - new: - rupture: - visible signs of mold/mildew: - visible wear: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible signs of mold/mildew: {} + visible wear: {} RoomConnectedEnum: permissible_values: - attic: - bathroom: - closet: - conference room: - elevator: - examining room: - hallway: - kitchen: - mail room: - office: - stairwell: + attic: {} + bathroom: {} + closet: {} + conference room: {} + elevator: {} + examining room: {} + hallway: {} + kitchen: {} + mail room: {} + office: {} + stairwell: {} RoomLocEnum: permissible_values: - corner room: - exterior wall: - interior room: + corner room: {} + exterior wall: {} + interior room: {} RoomSampPosEnum: permissible_values: - center: - east corner: - north corner: - northeast corner: - northwest corner: - south corner: - southeast corner: - southwest corner: - west corner: + center: {} + east corner: {} + north corner: {} + northeast corner: {} + northwest corner: {} + south corner: {} + southeast corner: {} + southwest corner: {} + west corner: {} RouteTransmissionEnum: permissible_values: - environmental:faecal-oral: - transplacental: - vector-borne:vector penetration: + environmental:faecal-oral: {} + transplacental: {} + vector-borne:vector penetration: {} SampCaptStatusEnum: permissible_values: - active surveillance in response to an outbreak: - active surveillance not initiated by an outbreak: - farm sample: - market sample: - other: + active surveillance in response to an outbreak: {} + active surveillance not initiated by an outbreak: {} + farm sample: {} + market sample: {} + other: {} SampCollectPointEnum: permissible_values: - drilling rig: - other: - separator: - storage tank: - test well: - well: - wellhead: + drilling rig: {} + other: {} + separator: {} + storage tank: {} + test well: {} + well: {} + wellhead: {} SampDisStageEnum: permissible_values: - dissemination: - growth and reproduction: - infection: - inoculation: - other: - penetration: + dissemination: {} + growth and reproduction: {} + infection: {} + inoculation: {} + other: {} + penetration: {} SampLocConditionEnum: permissible_values: - damaged: - new: - rupture: - visible signs of mold-mildew: - visible weariness repair: + damaged: {} + new: {} + rupture: {} + visible signs of mold-mildew: {} + visible weariness repair: {} SampSubtypeEnum: permissible_values: - biofilm: - not applicable: - oil phase: - other: - water phase: + biofilm: {} + not applicable: {} + oil phase: {} + other: {} + water phase: {} SampSurfMoistureEnum: permissible_values: - intermittent moisture: - not present: - submerged: + intermittent moisture: {} + not present: {} + submerged: {} SampTransportContEnum: permissible_values: - bottle: - cooler: - glass vial: - plastic vial: - vendor supplied container: + bottle: {} + cooler: {} + glass vial: {} + plastic vial: {} + vendor supplied container: {} SampWeatherEnum: permissible_values: - clear sky: - cloudy: - foggy: - hail: - rain: - sleet: - snow: - sunny: - windy: + clear sky: {} + cloudy: {} + foggy: {} + hail: {} + rain: {} + sleet: {} + snow: {} + sunny: {} + windy: {} ScLysisApproachEnum: permissible_values: - chemical: - combination: - enzymatic: - physical: + chemical: {} + combination: {} + enzymatic: {} + physical: {} SeasonUseEnum: permissible_values: - Fall: - Spring: - Summer: - Winter: + Fall: {} + Spring: {} + Summer: {} + Winter: {} SedimentTypeEnum: permissible_values: - biogenous: - cosmogenous: - hydrogenous: - lithogenous: + biogenous: {} + cosmogenous: {} + hydrogenous: {} + lithogenous: {} SeqQualityCheckEnum: permissible_values: - manually edited: - none: + manually edited: {} + none: {} ShadingDeviceLocEnum: permissible_values: - exterior: - interior: + exterior: {} + interior: {} ShadingDeviceTypeEnum: permissible_values: - bahama shutters: - exterior roll blind: - gambrel awning: - hood awning: - porchroller awning: - sarasota shutters: - slatted aluminum: - solid aluminum awning: - sun screen: - tree: - trellis: - venetian awning: + bahama shutters: {} + exterior roll blind: {} + gambrel awning: {} + hood awning: {} + porchroller awning: {} + sarasota shutters: {} + slatted aluminum: {} + solid aluminum awning: {} + sun screen: {} + tree: {} + trellis: {} + venetian awning: {} CompassDirections8Enum: permissible_values: - east: - north: - northeast: - northwest: - south: - southeast: - southwest: - west: + east: {} + north: {} + northeast: {} + northwest: {} + south: {} + southeast: {} + southwest: {} + west: {} MoldVisibilityEnum: permissible_values: - no presence of mold visible: - presence of mold visible: + no presence of mold visible: {} + presence of mold visible: {} DamagedRupturedEnum: permissible_values: - damaged: - needs repair: - new: - rupture: - visible wear: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} DamagedEnum: permissible_values: - damaged: - needs repair: - new: - rupture: - visible wear: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} CeilingWallTextureEnum: permissible_values: - Santa-Fe texture: - crows feet: - crows-foot stomp: - double skip: - hawk and trowel: - knockdown: - orange peel: - popcorn: - rosebud stomp: - skip trowel: - smooth: - stomp knockdown: - swirl: + Santa-Fe texture: {} + crows feet: {} + crows-foot stomp: {} + double skip: {} + hawk and trowel: {} + knockdown: {} + orange peel: {} + popcorn: {} + rosebud stomp: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} GeolAgeEnum: permissible_values: - Archean: - Cambrian: - Carboniferous: - Cenozoic: - Cretaceous: - Devonian: - Jurassic: - Mesozoic: - Neogene: - Ordovician: - Paleogene: - Paleozoic: - Permian: - Precambrian: - Proterozoic: - Silurian: - Triassic: - other: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} SoilHorizonEnum: permissible_values: - A horizon: - B horizon: - C horizon: - E horizon: - O horizon: - Permafrost: - R layer: + A horizon: {} + B horizon: {} + C horizon: {} + E horizon: {} + O horizon: {} + Permafrost: {} + R layer: {} SoilTextureClassEnum: permissible_values: - clay: - clay loam: - loam: - loamy sand: - sand: - sandy clay: - sandy clay loam: - sandy loam: - silt: - silt loam: - silty clay: - silty clay loam: + clay: {} + clay loam: {} + loam: {} + loamy sand: {} + sand: {} + sandy clay: {} + sandy clay loam: {} + sandy loam: {} + silt: {} + silt loam: {} + silty clay: {} + silty clay loam: {} SortTechEnum: permissible_values: - flow cytometric cell sorting: - lazer-tweezing: - microfluidics: - micromanipulation: - optical manipulation: - other: + flow cytometric cell sorting: {} + lazer-tweezing: {} + microfluidics: {} + micromanipulation: {} + optical manipulation: {} + other: {} SpaceTypStateEnum: permissible_values: - typically occupied: - typically unoccupied: + typically occupied: {} + typically unoccupied: {} SpecificEnum: permissible_values: - as built: - bid: - construction: - design: - operation: - photos: + as built: {} + bid: {} + construction: {} + design: {} + operation: {} + photos: {} SrDepEnvEnum: permissible_values: - Fluvioldeltaic: - Fluviomarine: - Lacustine: - Marine: - other: + Fluvioldeltaic: {} + Fluviomarine: {} + Lacustine: {} + Marine: {} + other: {} SrKerogTypeEnum: permissible_values: - Type I: - Type II: - Type III: - Type IV: - other: + Type I: {} + Type II: {} + Type III: {} + Type IV: {} + other: {} SrLithologyEnum: permissible_values: - Biosilicieous: - Carbonate: - Clastic: - Coal: - other: + Biosilicieous: {} + Carbonate: {} + Clastic: {} + Coal: {} + other: {} SubstructureTypeEnum: permissible_values: - basement: - crawlspace: - slab on grade: + basement: {} + crawlspace: {} + slab on grade: {} SurfAirContEnum: permissible_values: - biocides: - biological contaminants: - dust: - nutrients: - organic matter: - particulate matter: - radon: - volatile organic compounds: + biocides: {} + biological contaminants: {} + dust: {} + nutrients: {} + organic matter: {} + particulate matter: {} + radon: {} + volatile organic compounds: {} SurfMaterialEnum: permissible_values: - adobe: - carpet: - cinder blocks: - concrete: - glass: - hay bales: - metal: - paint: - plastic: - stainless steel: - stone: - stucco: - tile: - vinyl: - wood: + adobe: {} + carpet: {} + cinder blocks: {} + concrete: {} + glass: {} + hay bales: {} + metal: {} + paint: {} + plastic: {} + stainless steel: {} + stone: {} + stucco: {} + tile: {} + vinyl: {} + wood: {} SymbiontHostRoleEnum: permissible_values: - accidental: - dead-end: - definitive: - intermediate: - paratenic: - reservoir: - single host: + accidental: {} + dead-end: {} + definitive: {} + intermediate: {} + paratenic: {} + reservoir: {} + single host: {} SymLifeCycleTypeEnum: permissible_values: - complex life cycle: - simple life cycle: + complex life cycle: {} + simple life cycle: {} TaxIdentEnum: permissible_values: - 16S rRNA gene: - multi-marker approach: - other: + 16S rRNA gene: {} + multi-marker approach: {} + other: {} TidalStageEnum: permissible_values: - ebb tide: - flood tide: - high tide: - low tide: + ebb tide: {} + flood tide: {} + high tide: {} + low tide: {} TillageEnum: permissible_values: - chisel: - cutting disc: - disc plough: - drill: - mouldboard: - ridge till: - strip tillage: - tined: - zonal tillage: + chisel: {} + cutting disc: {} + disc plough: {} + drill: {} + mouldboard: {} + ridge till: {} + strip tillage: {} + tined: {} + zonal tillage: {} TrainLineEnum: permissible_values: - green: - orange: - red: + green: {} + orange: {} + red: {} TrainStatLocEnum: permissible_values: - forest hills: - riverside: - south station above ground: - south station amtrak: - south station underground: + forest hills: {} + riverside: {} + south station above ground: {} + south station amtrak: {} + south station underground: {} TrainStopLocEnum: permissible_values: - downtown: - end: - mid: + downtown: {} + end: {} + mid: {} TrophicLevelEnum: permissible_values: - autotroph: - carboxydotroph: - chemoautolithotroph: - chemoautotroph: - chemoheterotroph: - chemolithoautotroph: - chemolithotroph: - chemoorganoheterotroph: - chemoorganotroph: - chemosynthetic: - chemotroph: - copiotroph: - diazotroph: - facultative: - heterotroph: - lithoautotroph: - lithoheterotroph: - lithotroph: - methanotroph: - methylotroph: - mixotroph: - obligate: - oligotroph: - organoheterotroph: - organotroph: - photoautotroph: - photoheterotroph: - photolithoautotroph: - photolithotroph: - photosynthetic: - phototroph: + autotroph: {} + carboxydotroph: {} + chemoautolithotroph: {} + chemoautotroph: {} + chemoheterotroph: {} + chemolithoautotroph: {} + chemolithotroph: {} + chemoorganoheterotroph: {} + chemoorganotroph: {} + chemosynthetic: {} + chemotroph: {} + copiotroph: {} + diazotroph: {} + facultative: {} + heterotroph: {} + lithoautotroph: {} + lithoheterotroph: {} + lithotroph: {} + methanotroph: {} + methylotroph: {} + mixotroph: {} + obligate: {} + oligotroph: {} + organoheterotroph: {} + organotroph: {} + photoautotroph: {} + photoheterotroph: {} + photolithoautotroph: {} + photolithotroph: {} + photosynthetic: {} + phototroph: {} TypeOfSymbiosisEnum: permissible_values: - commensalistic: - mutualistic: - parasitic: + commensalistic: {} + mutualistic: {} + parasitic: {} UrineCollectMethEnum: permissible_values: - catheter: - clean catch: + catheter: {} + clean catch: {} UrobiomSexEnum: permissible_values: - female: - hermaphrodite: - male: - neuter: + female: {} + hermaphrodite: {} + male: {} + neuter: {} VirusEnrichApprEnum: permissible_values: - CsCl density gradient: - DNAse: - FeCl Precipitation: - PEG Precipitation: - RNAse: - centrifugation: - filtration: - none: - other: - targeted sequence capture: - ultracentrifugation: - ultrafiltration: + CsCl density gradient: {} + DNAse: {} + FeCl Precipitation: {} + PEG Precipitation: {} + RNAse: {} + centrifugation: {} + filtration: {} + none: {} + other: {} + targeted sequence capture: {} + ultracentrifugation: {} + ultrafiltration: {} WallConstTypeEnum: permissible_values: - fire resistive: - frame construction: - joisted masonry: - light noncombustible: - masonry noncombustible: - modified fire resistive: + fire resistive: {} + frame construction: {} + joisted masonry: {} + light noncombustible: {} + masonry noncombustible: {} + modified fire resistive: {} WallFinishMatEnum: permissible_values: - acoustical treatment: - gypsum board: - gypsum plaster: - masonry: - metal: - plaster: - stone facing: - terrazzo: - tile: - veneer plaster: - wood: + acoustical treatment: {} + gypsum board: {} + gypsum plaster: {} + masonry: {} + metal: {} + plaster: {} + stone facing: {} + terrazzo: {} + tile: {} + veneer plaster: {} + wood: {} WallSurfTreatmentEnum: permissible_values: - fabric: - no treatment: - painted: - paneling: - stucco: - wall paper: + fabric: {} + no treatment: {} + painted: {} + paneling: {} + stucco: {} + wall paper: {} WaterFeatTypeEnum: permissible_values: - fountain: - pool: - standing feature: - stream: - waterfall: + fountain: {} + pool: {} + standing feature: {} + stream: {} + waterfall: {} WeekdayEnum: permissible_values: - Friday: - Monday: - Saturday: - Sunday: - Thursday: - Tuesday: - Wednesday: + Friday: {} + Monday: {} + Saturday: {} + Sunday: {} + Thursday: {} + Tuesday: {} + Wednesday: {} WgaAmpApprEnum: permissible_values: - mda based: - pcr based: + mda based: {} + pcr based: {} WindowCoverEnum: permissible_values: - blinds: - curtains: - none: + blinds: {} + curtains: {} + none: {} WindowHorizPosEnum: permissible_values: - left: - middle: - right: + left: {} + middle: {} + right: {} WindowMatEnum: permissible_values: - clad: - fiberglass: - metal: - vinyl: - wood: + clad: {} + fiberglass: {} + metal: {} + vinyl: {} + wood: {} WindowStatusEnum: permissible_values: - closed: - open: + closed: {} + open: {} WindowTypeEnum: permissible_values: - fixed window: - horizontal sash window: - single-hung sash window: + fixed window: {} + horizontal sash window: {} + single-hung sash window: {} WindowVertPosEnum: permissible_values: - bottom: - high: - low: - middle: - top: + bottom: {} + high: {} + low: {} + middle: {} + top: {} slots: migs_ba_data: description: Data that comply with checklist MigsBa title: MigsBa data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_data - multivalued: true range: MigsBa + multivalued: true inlined: true inlined_as_list: true agriculture_data: description: Data that comply with Extension Agriculture title: Agriculture data - domain: MixsCompliantData slot_uri: MIXS:agriculture_data - multivalued: true range: Agriculture + multivalued: true inlined: true inlined_as_list: true migs_ba_agriculture_data: description: Data that comply with MigsBa combined with Agriculture title: MigsBaAgriculture data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_agriculture_data - multivalued: true range: MigsBaAgriculture + multivalued: true inlined: true inlined_as_list: true air_data: @@ -1174,307 +1175,273 @@ slots: title: Air data keywords: - air - domain: MixsCompliantData slot_uri: MIXS:air_data - multivalued: true range: Air + multivalued: true inlined: true inlined_as_list: true migs_ba_air_data: description: Data that comply with MigsBa combined with Air title: MigsBaAir data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_air_data - multivalued: true range: MigsBaAir + multivalued: true inlined: true inlined_as_list: true built_environment_data: description: Data that comply with Extension BuiltEnvironment title: BuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:built_environment_data - multivalued: true range: BuiltEnvironment + multivalued: true inlined: true inlined_as_list: true migs_ba_built_environment_data: description: Data that comply with MigsBa combined with BuiltEnvironment title: MigsBaBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_built_environment_data - multivalued: true range: MigsBaBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true food_animal_and_animal_feed_data: description: Data that comply with Extension FoodAnimalAndAnimalFeed title: FoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:food_animal_and_animal_feed_data - multivalued: true range: FoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true migs_ba_food_animal_and_animal_feed_data: description: Data that comply with MigsBa combined with FoodAnimalAndAnimalFeed title: MigsBaFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_food_animal_and_animal_feed_data - multivalued: true range: MigsBaFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true food_farm_environment_data: description: Data that comply with Extension FoodFarmEnvironment title: FoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:food_farm_environment_data - multivalued: true range: FoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true migs_ba_food_farm_environment_data: description: Data that comply with MigsBa combined with FoodFarmEnvironment title: MigsBaFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_food_farm_environment_data - multivalued: true range: MigsBaFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true food_food_production_facility_data: description: Data that comply with Extension FoodFoodProductionFacility title: FoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:food_food_production_facility_data - multivalued: true range: FoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true migs_ba_food_food_production_facility_data: description: Data that comply with MigsBa combined with FoodFoodProductionFacility title: MigsBaFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_food_food_production_facility_data - multivalued: true range: MigsBaFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true food_human_foods_data: description: Data that comply with Extension FoodHumanFoods title: FoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:food_human_foods_data - multivalued: true range: FoodHumanFoods + multivalued: true inlined: true inlined_as_list: true migs_ba_food_human_foods_data: description: Data that comply with MigsBa combined with FoodHumanFoods title: MigsBaFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_food_human_foods_data - multivalued: true range: MigsBaFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true host_associated_data: description: Data that comply with Extension HostAssociated title: HostAssociated data - domain: MixsCompliantData slot_uri: MIXS:host_associated_data - multivalued: true range: HostAssociated + multivalued: true inlined: true inlined_as_list: true migs_ba_host_associated_data: description: Data that comply with MigsBa combined with HostAssociated title: MigsBaHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_host_associated_data - multivalued: true range: MigsBaHostAssociated + multivalued: true inlined: true inlined_as_list: true human_associated_data: description: Data that comply with Extension HumanAssociated title: HumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:human_associated_data - multivalued: true range: HumanAssociated + multivalued: true inlined: true inlined_as_list: true migs_ba_human_associated_data: description: Data that comply with MigsBa combined with HumanAssociated title: MigsBaHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_human_associated_data - multivalued: true range: MigsBaHumanAssociated + multivalued: true inlined: true inlined_as_list: true human_gut_data: description: Data that comply with Extension HumanGut title: HumanGut data - domain: MixsCompliantData slot_uri: MIXS:human_gut_data - multivalued: true range: HumanGut + multivalued: true inlined: true inlined_as_list: true migs_ba_human_gut_data: description: Data that comply with MigsBa combined with HumanGut title: MigsBaHumanGut data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_human_gut_data - multivalued: true range: MigsBaHumanGut + multivalued: true inlined: true inlined_as_list: true human_oral_data: description: Data that comply with Extension HumanOral title: HumanOral data - domain: MixsCompliantData slot_uri: MIXS:human_oral_data - multivalued: true range: HumanOral + multivalued: true inlined: true inlined_as_list: true migs_ba_human_oral_data: description: Data that comply with MigsBa combined with HumanOral title: MigsBaHumanOral data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_human_oral_data - multivalued: true range: MigsBaHumanOral + multivalued: true inlined: true inlined_as_list: true human_skin_data: description: Data that comply with Extension HumanSkin title: HumanSkin data - domain: MixsCompliantData slot_uri: MIXS:human_skin_data - multivalued: true range: HumanSkin + multivalued: true inlined: true inlined_as_list: true migs_ba_human_skin_data: description: Data that comply with MigsBa combined with HumanSkin title: MigsBaHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_human_skin_data - multivalued: true range: MigsBaHumanSkin + multivalued: true inlined: true inlined_as_list: true human_vaginal_data: description: Data that comply with Extension HumanVaginal title: HumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:human_vaginal_data - multivalued: true range: HumanVaginal + multivalued: true inlined: true inlined_as_list: true migs_ba_human_vaginal_data: description: Data that comply with MigsBa combined with HumanVaginal title: MigsBaHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_human_vaginal_data - multivalued: true range: MigsBaHumanVaginal + multivalued: true inlined: true inlined_as_list: true hydrocarbon_resources_cores_data: description: Data that comply with Extension HydrocarbonResourcesCores title: HydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:hydrocarbon_resources_cores_data - multivalued: true range: HydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true migs_ba_hydrocarbon_resources_cores_data: description: Data that comply with MigsBa combined with HydrocarbonResourcesCores title: MigsBaHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_hydrocarbon_resources_cores_data - multivalued: true range: MigsBaHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true hydrocarbon_resources_fluids_swabs_data: description: Data that comply with Extension HydrocarbonResourcesFluidsSwabs title: HydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:hydrocarbon_resources_fluids_swabs_data - multivalued: true range: HydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true migs_ba_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MigsBa combined with HydrocarbonResourcesFluidsSwabs title: MigsBaHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MigsBaHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true microbial_mat_biofilm_data: description: Data that comply with Extension MicrobialMatBiofilm title: MicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:microbial_mat_biofilm_data - multivalued: true range: MicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true migs_ba_microbial_mat_biofilm_data: description: Data that comply with MigsBa combined with MicrobialMatBiofilm title: MigsBaMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_microbial_mat_biofilm_data - multivalued: true range: MigsBaMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true miscellaneous_natural_or_artificial_environment_data: description: Data that comply with Extension MiscellaneousNaturalOrArtificialEnvironment title: MiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true migs_ba_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment title: MigsBaMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MigsBaMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true plant_associated_data: description: Data that comply with Extension PlantAssociated title: PlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:plant_associated_data - multivalued: true range: PlantAssociated + multivalued: true inlined: true inlined_as_list: true migs_ba_plant_associated_data: description: Data that comply with MigsBa combined with PlantAssociated title: MigsBaPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_plant_associated_data - multivalued: true range: MigsBaPlantAssociated + multivalued: true inlined: true inlined_as_list: true sediment_data: @@ -1482,19 +1449,17 @@ slots: title: Sediment data keywords: - sediment - domain: MixsCompliantData slot_uri: MIXS:sediment_data - multivalued: true range: Sediment + multivalued: true inlined: true inlined_as_list: true migs_ba_sediment_data: description: Data that comply with MigsBa combined with Sediment title: MigsBaSediment data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_sediment_data - multivalued: true range: MigsBaSediment + multivalued: true inlined: true inlined_as_list: true soil_data: @@ -1502,55 +1467,49 @@ slots: title: Soil data keywords: - soil - domain: MixsCompliantData slot_uri: MIXS:soil_data - multivalued: true range: Soil + multivalued: true inlined: true inlined_as_list: true migs_ba_soil_data: description: Data that comply with MigsBa combined with Soil title: MigsBaSoil data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_soil_data - multivalued: true range: MigsBaSoil + multivalued: true inlined: true inlined_as_list: true symbiont_associated_data: description: Data that comply with Extension SymbiontAssociated title: SymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:symbiont_associated_data - multivalued: true range: SymbiontAssociated + multivalued: true inlined: true inlined_as_list: true migs_ba_symbiont_associated_data: description: Data that comply with MigsBa combined with SymbiontAssociated title: MigsBaSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_symbiont_associated_data - multivalued: true range: MigsBaSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true wastewater_sludge_data: description: Data that comply with Extension WastewaterSludge title: WastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:wastewater_sludge_data - multivalued: true range: WastewaterSludge + multivalued: true inlined: true inlined_as_list: true migs_ba_wastewater_sludge_data: description: Data that comply with MigsBa combined with WastewaterSludge title: MigsBaWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_wastewater_sludge_data - multivalued: true range: MigsBaWastewaterSludge + multivalued: true inlined: true inlined_as_list: true water_data: @@ -1558,2179 +1517,1937 @@ slots: title: Water data keywords: - water - domain: MixsCompliantData slot_uri: MIXS:water_data - multivalued: true range: Water + multivalued: true inlined: true inlined_as_list: true migs_ba_water_data: description: Data that comply with MigsBa combined with Water title: MigsBaWater data - domain: MixsCompliantData slot_uri: MIXS:migs_ba_water_data - multivalued: true range: MigsBaWater + multivalued: true inlined: true inlined_as_list: true migs_eu_data: description: Data that comply with checklist MigsEu title: MigsEu data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_data - multivalued: true range: MigsEu + multivalued: true inlined: true inlined_as_list: true migs_eu_agriculture_data: description: Data that comply with MigsEu combined with Agriculture title: MigsEuAgriculture data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_agriculture_data - multivalued: true range: MigsEuAgriculture + multivalued: true inlined: true inlined_as_list: true migs_eu_air_data: description: Data that comply with MigsEu combined with Air title: MigsEuAir data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_air_data - multivalued: true range: MigsEuAir + multivalued: true inlined: true inlined_as_list: true migs_eu_built_environment_data: description: Data that comply with MigsEu combined with BuiltEnvironment title: MigsEuBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_built_environment_data - multivalued: true range: MigsEuBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true migs_eu_food_animal_and_animal_feed_data: description: Data that comply with MigsEu combined with FoodAnimalAndAnimalFeed title: MigsEuFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_food_animal_and_animal_feed_data - multivalued: true range: MigsEuFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true migs_eu_food_farm_environment_data: description: Data that comply with MigsEu combined with FoodFarmEnvironment title: MigsEuFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_food_farm_environment_data - multivalued: true range: MigsEuFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true migs_eu_food_food_production_facility_data: description: Data that comply with MigsEu combined with FoodFoodProductionFacility title: MigsEuFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_food_food_production_facility_data - multivalued: true range: MigsEuFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true migs_eu_food_human_foods_data: description: Data that comply with MigsEu combined with FoodHumanFoods title: MigsEuFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_food_human_foods_data - multivalued: true range: MigsEuFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true migs_eu_host_associated_data: description: Data that comply with MigsEu combined with HostAssociated title: MigsEuHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_host_associated_data - multivalued: true range: MigsEuHostAssociated + multivalued: true inlined: true inlined_as_list: true migs_eu_human_associated_data: description: Data that comply with MigsEu combined with HumanAssociated title: MigsEuHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_human_associated_data - multivalued: true range: MigsEuHumanAssociated + multivalued: true inlined: true inlined_as_list: true migs_eu_human_gut_data: description: Data that comply with MigsEu combined with HumanGut title: MigsEuHumanGut data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_human_gut_data - multivalued: true range: MigsEuHumanGut + multivalued: true inlined: true inlined_as_list: true migs_eu_human_oral_data: description: Data that comply with MigsEu combined with HumanOral title: MigsEuHumanOral data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_human_oral_data - multivalued: true range: MigsEuHumanOral + multivalued: true inlined: true inlined_as_list: true migs_eu_human_skin_data: description: Data that comply with MigsEu combined with HumanSkin title: MigsEuHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_human_skin_data - multivalued: true range: MigsEuHumanSkin + multivalued: true inlined: true inlined_as_list: true migs_eu_human_vaginal_data: description: Data that comply with MigsEu combined with HumanVaginal title: MigsEuHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_human_vaginal_data - multivalued: true range: MigsEuHumanVaginal + multivalued: true inlined: true inlined_as_list: true migs_eu_hydrocarbon_resources_cores_data: description: Data that comply with MigsEu combined with HydrocarbonResourcesCores title: MigsEuHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_hydrocarbon_resources_cores_data - multivalued: true range: MigsEuHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true migs_eu_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MigsEu combined with HydrocarbonResourcesFluidsSwabs title: MigsEuHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MigsEuHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true migs_eu_microbial_mat_biofilm_data: description: Data that comply with MigsEu combined with MicrobialMatBiofilm title: MigsEuMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_microbial_mat_biofilm_data - multivalued: true range: MigsEuMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true migs_eu_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment title: MigsEuMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MigsEuMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true migs_eu_plant_associated_data: description: Data that comply with MigsEu combined with PlantAssociated title: MigsEuPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_plant_associated_data - multivalued: true range: MigsEuPlantAssociated + multivalued: true inlined: true inlined_as_list: true migs_eu_sediment_data: description: Data that comply with MigsEu combined with Sediment title: MigsEuSediment data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_sediment_data - multivalued: true range: MigsEuSediment + multivalued: true inlined: true inlined_as_list: true migs_eu_soil_data: description: Data that comply with MigsEu combined with Soil title: MigsEuSoil data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_soil_data - multivalued: true range: MigsEuSoil + multivalued: true inlined: true inlined_as_list: true migs_eu_symbiont_associated_data: description: Data that comply with MigsEu combined with SymbiontAssociated title: MigsEuSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_symbiont_associated_data - multivalued: true range: MigsEuSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true migs_eu_wastewater_sludge_data: description: Data that comply with MigsEu combined with WastewaterSludge title: MigsEuWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_wastewater_sludge_data - multivalued: true range: MigsEuWastewaterSludge + multivalued: true inlined: true inlined_as_list: true migs_eu_water_data: description: Data that comply with MigsEu combined with Water title: MigsEuWater data - domain: MixsCompliantData slot_uri: MIXS:migs_eu_water_data - multivalued: true range: MigsEuWater + multivalued: true inlined: true inlined_as_list: true migs_org_data: description: Data that comply with checklist MigsOrg title: MigsOrg data - domain: MixsCompliantData slot_uri: MIXS:migs_org_data - multivalued: true range: MigsOrg + multivalued: true inlined: true inlined_as_list: true migs_org_agriculture_data: description: Data that comply with MigsOrg combined with Agriculture title: MigsOrgAgriculture data - domain: MixsCompliantData slot_uri: MIXS:migs_org_agriculture_data - multivalued: true range: MigsOrgAgriculture + multivalued: true inlined: true inlined_as_list: true migs_org_air_data: description: Data that comply with MigsOrg combined with Air title: MigsOrgAir data - domain: MixsCompliantData slot_uri: MIXS:migs_org_air_data - multivalued: true range: MigsOrgAir + multivalued: true inlined: true inlined_as_list: true migs_org_built_environment_data: description: Data that comply with MigsOrg combined with BuiltEnvironment title: MigsOrgBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_org_built_environment_data - multivalued: true range: MigsOrgBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true migs_org_food_animal_and_animal_feed_data: description: Data that comply with MigsOrg combined with FoodAnimalAndAnimalFeed title: MigsOrgFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:migs_org_food_animal_and_animal_feed_data - multivalued: true range: MigsOrgFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true migs_org_food_farm_environment_data: description: Data that comply with MigsOrg combined with FoodFarmEnvironment title: MigsOrgFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_org_food_farm_environment_data - multivalued: true range: MigsOrgFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true migs_org_food_food_production_facility_data: description: Data that comply with MigsOrg combined with FoodFoodProductionFacility title: MigsOrgFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:migs_org_food_food_production_facility_data - multivalued: true range: MigsOrgFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true migs_org_food_human_foods_data: description: Data that comply with MigsOrg combined with FoodHumanFoods title: MigsOrgFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:migs_org_food_human_foods_data - multivalued: true range: MigsOrgFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true migs_org_host_associated_data: description: Data that comply with MigsOrg combined with HostAssociated title: MigsOrgHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_org_host_associated_data - multivalued: true range: MigsOrgHostAssociated + multivalued: true inlined: true inlined_as_list: true migs_org_human_associated_data: description: Data that comply with MigsOrg combined with HumanAssociated title: MigsOrgHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_org_human_associated_data - multivalued: true range: MigsOrgHumanAssociated + multivalued: true inlined: true inlined_as_list: true migs_org_human_gut_data: description: Data that comply with MigsOrg combined with HumanGut title: MigsOrgHumanGut data - domain: MixsCompliantData slot_uri: MIXS:migs_org_human_gut_data - multivalued: true range: MigsOrgHumanGut + multivalued: true inlined: true inlined_as_list: true migs_org_human_oral_data: description: Data that comply with MigsOrg combined with HumanOral title: MigsOrgHumanOral data - domain: MixsCompliantData slot_uri: MIXS:migs_org_human_oral_data - multivalued: true range: MigsOrgHumanOral + multivalued: true inlined: true inlined_as_list: true migs_org_human_skin_data: description: Data that comply with MigsOrg combined with HumanSkin title: MigsOrgHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:migs_org_human_skin_data - multivalued: true range: MigsOrgHumanSkin + multivalued: true inlined: true inlined_as_list: true migs_org_human_vaginal_data: description: Data that comply with MigsOrg combined with HumanVaginal title: MigsOrgHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:migs_org_human_vaginal_data - multivalued: true range: MigsOrgHumanVaginal + multivalued: true inlined: true inlined_as_list: true migs_org_hydrocarbon_resources_cores_data: description: Data that comply with MigsOrg combined with HydrocarbonResourcesCores title: MigsOrgHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:migs_org_hydrocarbon_resources_cores_data - multivalued: true range: MigsOrgHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true migs_org_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MigsOrg combined with HydrocarbonResourcesFluidsSwabs title: MigsOrgHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:migs_org_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MigsOrgHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true migs_org_microbial_mat_biofilm_data: description: Data that comply with MigsOrg combined with MicrobialMatBiofilm title: MigsOrgMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:migs_org_microbial_mat_biofilm_data - multivalued: true range: MigsOrgMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true migs_org_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment title: MigsOrgMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_org_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MigsOrgMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true migs_org_plant_associated_data: description: Data that comply with MigsOrg combined with PlantAssociated title: MigsOrgPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_org_plant_associated_data - multivalued: true range: MigsOrgPlantAssociated + multivalued: true inlined: true inlined_as_list: true migs_org_sediment_data: description: Data that comply with MigsOrg combined with Sediment title: MigsOrgSediment data - domain: MixsCompliantData slot_uri: MIXS:migs_org_sediment_data - multivalued: true range: MigsOrgSediment + multivalued: true inlined: true inlined_as_list: true migs_org_soil_data: description: Data that comply with MigsOrg combined with Soil title: MigsOrgSoil data - domain: MixsCompliantData slot_uri: MIXS:migs_org_soil_data - multivalued: true range: MigsOrgSoil + multivalued: true inlined: true inlined_as_list: true migs_org_symbiont_associated_data: description: Data that comply with MigsOrg combined with SymbiontAssociated title: MigsOrgSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_org_symbiont_associated_data - multivalued: true range: MigsOrgSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true migs_org_wastewater_sludge_data: description: Data that comply with MigsOrg combined with WastewaterSludge title: MigsOrgWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:migs_org_wastewater_sludge_data - multivalued: true range: MigsOrgWastewaterSludge + multivalued: true inlined: true inlined_as_list: true migs_org_water_data: description: Data that comply with MigsOrg combined with Water title: MigsOrgWater data - domain: MixsCompliantData slot_uri: MIXS:migs_org_water_data - multivalued: true range: MigsOrgWater + multivalued: true inlined: true inlined_as_list: true migs_pl_data: description: Data that comply with checklist MigsPl title: MigsPl data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_data - multivalued: true range: MigsPl + multivalued: true inlined: true inlined_as_list: true migs_pl_agriculture_data: description: Data that comply with MigsPl combined with Agriculture title: MigsPlAgriculture data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_agriculture_data - multivalued: true range: MigsPlAgriculture + multivalued: true inlined: true inlined_as_list: true migs_pl_air_data: description: Data that comply with MigsPl combined with Air title: MigsPlAir data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_air_data - multivalued: true range: MigsPlAir + multivalued: true inlined: true inlined_as_list: true migs_pl_built_environment_data: description: Data that comply with MigsPl combined with BuiltEnvironment title: MigsPlBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_built_environment_data - multivalued: true range: MigsPlBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true migs_pl_food_animal_and_animal_feed_data: description: Data that comply with MigsPl combined with FoodAnimalAndAnimalFeed title: MigsPlFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_food_animal_and_animal_feed_data - multivalued: true range: MigsPlFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true migs_pl_food_farm_environment_data: description: Data that comply with MigsPl combined with FoodFarmEnvironment title: MigsPlFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_food_farm_environment_data - multivalued: true range: MigsPlFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true migs_pl_food_food_production_facility_data: description: Data that comply with MigsPl combined with FoodFoodProductionFacility title: MigsPlFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_food_food_production_facility_data - multivalued: true range: MigsPlFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true migs_pl_food_human_foods_data: description: Data that comply with MigsPl combined with FoodHumanFoods title: MigsPlFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_food_human_foods_data - multivalued: true range: MigsPlFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true migs_pl_host_associated_data: description: Data that comply with MigsPl combined with HostAssociated title: MigsPlHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_host_associated_data - multivalued: true range: MigsPlHostAssociated + multivalued: true inlined: true inlined_as_list: true migs_pl_human_associated_data: description: Data that comply with MigsPl combined with HumanAssociated title: MigsPlHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_human_associated_data - multivalued: true range: MigsPlHumanAssociated + multivalued: true inlined: true inlined_as_list: true migs_pl_human_gut_data: description: Data that comply with MigsPl combined with HumanGut title: MigsPlHumanGut data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_human_gut_data - multivalued: true range: MigsPlHumanGut + multivalued: true inlined: true inlined_as_list: true migs_pl_human_oral_data: description: Data that comply with MigsPl combined with HumanOral title: MigsPlHumanOral data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_human_oral_data - multivalued: true range: MigsPlHumanOral + multivalued: true inlined: true inlined_as_list: true migs_pl_human_skin_data: description: Data that comply with MigsPl combined with HumanSkin title: MigsPlHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_human_skin_data - multivalued: true range: MigsPlHumanSkin + multivalued: true inlined: true inlined_as_list: true migs_pl_human_vaginal_data: description: Data that comply with MigsPl combined with HumanVaginal title: MigsPlHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_human_vaginal_data - multivalued: true range: MigsPlHumanVaginal + multivalued: true inlined: true inlined_as_list: true migs_pl_hydrocarbon_resources_cores_data: description: Data that comply with MigsPl combined with HydrocarbonResourcesCores title: MigsPlHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_hydrocarbon_resources_cores_data - multivalued: true range: MigsPlHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true migs_pl_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MigsPl combined with HydrocarbonResourcesFluidsSwabs title: MigsPlHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MigsPlHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true migs_pl_microbial_mat_biofilm_data: description: Data that comply with MigsPl combined with MicrobialMatBiofilm title: MigsPlMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_microbial_mat_biofilm_data - multivalued: true range: MigsPlMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true migs_pl_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment title: MigsPlMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MigsPlMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true migs_pl_plant_associated_data: description: Data that comply with MigsPl combined with PlantAssociated title: MigsPlPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_plant_associated_data - multivalued: true range: MigsPlPlantAssociated + multivalued: true inlined: true inlined_as_list: true migs_pl_sediment_data: description: Data that comply with MigsPl combined with Sediment title: MigsPlSediment data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_sediment_data - multivalued: true range: MigsPlSediment + multivalued: true inlined: true inlined_as_list: true migs_pl_soil_data: description: Data that comply with MigsPl combined with Soil title: MigsPlSoil data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_soil_data - multivalued: true range: MigsPlSoil + multivalued: true inlined: true inlined_as_list: true migs_pl_symbiont_associated_data: description: Data that comply with MigsPl combined with SymbiontAssociated title: MigsPlSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_symbiont_associated_data - multivalued: true range: MigsPlSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true migs_pl_wastewater_sludge_data: description: Data that comply with MigsPl combined with WastewaterSludge title: MigsPlWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_wastewater_sludge_data - multivalued: true range: MigsPlWastewaterSludge + multivalued: true inlined: true inlined_as_list: true migs_pl_water_data: description: Data that comply with MigsPl combined with Water title: MigsPlWater data - domain: MixsCompliantData slot_uri: MIXS:migs_pl_water_data - multivalued: true range: MigsPlWater + multivalued: true inlined: true inlined_as_list: true migs_vi_data: description: Data that comply with checklist MigsVi title: MigsVi data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_data - multivalued: true range: MigsVi + multivalued: true inlined: true inlined_as_list: true migs_vi_agriculture_data: description: Data that comply with MigsVi combined with Agriculture title: MigsViAgriculture data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_agriculture_data - multivalued: true range: MigsViAgriculture + multivalued: true inlined: true inlined_as_list: true migs_vi_air_data: description: Data that comply with MigsVi combined with Air title: MigsViAir data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_air_data - multivalued: true range: MigsViAir + multivalued: true inlined: true inlined_as_list: true migs_vi_built_environment_data: description: Data that comply with MigsVi combined with BuiltEnvironment title: MigsViBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_built_environment_data - multivalued: true range: MigsViBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true migs_vi_food_animal_and_animal_feed_data: description: Data that comply with MigsVi combined with FoodAnimalAndAnimalFeed title: MigsViFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_food_animal_and_animal_feed_data - multivalued: true range: MigsViFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true migs_vi_food_farm_environment_data: description: Data that comply with MigsVi combined with FoodFarmEnvironment title: MigsViFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_food_farm_environment_data - multivalued: true range: MigsViFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true migs_vi_food_food_production_facility_data: description: Data that comply with MigsVi combined with FoodFoodProductionFacility title: MigsViFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_food_food_production_facility_data - multivalued: true range: MigsViFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true migs_vi_food_human_foods_data: description: Data that comply with MigsVi combined with FoodHumanFoods title: MigsViFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_food_human_foods_data - multivalued: true range: MigsViFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true migs_vi_host_associated_data: description: Data that comply with MigsVi combined with HostAssociated title: MigsViHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_host_associated_data - multivalued: true range: MigsViHostAssociated + multivalued: true inlined: true inlined_as_list: true migs_vi_human_associated_data: description: Data that comply with MigsVi combined with HumanAssociated title: MigsViHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_human_associated_data - multivalued: true range: MigsViHumanAssociated + multivalued: true inlined: true inlined_as_list: true migs_vi_human_gut_data: description: Data that comply with MigsVi combined with HumanGut title: MigsViHumanGut data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_human_gut_data - multivalued: true range: MigsViHumanGut + multivalued: true inlined: true inlined_as_list: true migs_vi_human_oral_data: description: Data that comply with MigsVi combined with HumanOral title: MigsViHumanOral data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_human_oral_data - multivalued: true range: MigsViHumanOral + multivalued: true inlined: true inlined_as_list: true migs_vi_human_skin_data: description: Data that comply with MigsVi combined with HumanSkin title: MigsViHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_human_skin_data - multivalued: true range: MigsViHumanSkin + multivalued: true inlined: true inlined_as_list: true migs_vi_human_vaginal_data: description: Data that comply with MigsVi combined with HumanVaginal title: MigsViHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_human_vaginal_data - multivalued: true range: MigsViHumanVaginal + multivalued: true inlined: true inlined_as_list: true migs_vi_hydrocarbon_resources_cores_data: description: Data that comply with MigsVi combined with HydrocarbonResourcesCores title: MigsViHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_hydrocarbon_resources_cores_data - multivalued: true range: MigsViHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true migs_vi_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MigsVi combined with HydrocarbonResourcesFluidsSwabs title: MigsViHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MigsViHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true migs_vi_microbial_mat_biofilm_data: description: Data that comply with MigsVi combined with MicrobialMatBiofilm title: MigsViMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_microbial_mat_biofilm_data - multivalued: true range: MigsViMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true migs_vi_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment title: MigsViMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MigsViMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true migs_vi_plant_associated_data: description: Data that comply with MigsVi combined with PlantAssociated title: MigsViPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_plant_associated_data - multivalued: true range: MigsViPlantAssociated + multivalued: true inlined: true inlined_as_list: true migs_vi_sediment_data: description: Data that comply with MigsVi combined with Sediment title: MigsViSediment data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_sediment_data - multivalued: true range: MigsViSediment + multivalued: true inlined: true inlined_as_list: true migs_vi_soil_data: description: Data that comply with MigsVi combined with Soil title: MigsViSoil data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_soil_data - multivalued: true range: MigsViSoil + multivalued: true inlined: true inlined_as_list: true migs_vi_symbiont_associated_data: description: Data that comply with MigsVi combined with SymbiontAssociated title: MigsViSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_symbiont_associated_data - multivalued: true range: MigsViSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true migs_vi_wastewater_sludge_data: description: Data that comply with MigsVi combined with WastewaterSludge title: MigsViWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_wastewater_sludge_data - multivalued: true range: MigsViWastewaterSludge + multivalued: true inlined: true inlined_as_list: true migs_vi_water_data: description: Data that comply with MigsVi combined with Water title: MigsViWater data - domain: MixsCompliantData slot_uri: MIXS:migs_vi_water_data - multivalued: true range: MigsViWater + multivalued: true inlined: true inlined_as_list: true mimag_data: description: Data that comply with checklist Mimag title: Mimag data - domain: MixsCompliantData slot_uri: MIXS:mimag_data - multivalued: true range: Mimag + multivalued: true inlined: true inlined_as_list: true mimag_agriculture_data: description: Data that comply with Mimag combined with Agriculture title: MimagAgriculture data - domain: MixsCompliantData slot_uri: MIXS:mimag_agriculture_data - multivalued: true range: MimagAgriculture + multivalued: true inlined: true inlined_as_list: true mimag_air_data: description: Data that comply with Mimag combined with Air title: MimagAir data - domain: MixsCompliantData slot_uri: MIXS:mimag_air_data - multivalued: true range: MimagAir + multivalued: true inlined: true inlined_as_list: true mimag_built_environment_data: description: Data that comply with Mimag combined with BuiltEnvironment title: MimagBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimag_built_environment_data - multivalued: true range: MimagBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true mimag_food_animal_and_animal_feed_data: description: Data that comply with Mimag combined with FoodAnimalAndAnimalFeed title: MimagFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:mimag_food_animal_and_animal_feed_data - multivalued: true range: MimagFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true mimag_food_farm_environment_data: description: Data that comply with Mimag combined with FoodFarmEnvironment title: MimagFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimag_food_farm_environment_data - multivalued: true range: MimagFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true mimag_food_food_production_facility_data: description: Data that comply with Mimag combined with FoodFoodProductionFacility title: MimagFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:mimag_food_food_production_facility_data - multivalued: true range: MimagFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true mimag_food_human_foods_data: description: Data that comply with Mimag combined with FoodHumanFoods title: MimagFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:mimag_food_human_foods_data - multivalued: true range: MimagFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true mimag_host_associated_data: description: Data that comply with Mimag combined with HostAssociated title: MimagHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimag_host_associated_data - multivalued: true range: MimagHostAssociated + multivalued: true inlined: true inlined_as_list: true mimag_human_associated_data: description: Data that comply with Mimag combined with HumanAssociated title: MimagHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimag_human_associated_data - multivalued: true range: MimagHumanAssociated + multivalued: true inlined: true inlined_as_list: true mimag_human_gut_data: description: Data that comply with Mimag combined with HumanGut title: MimagHumanGut data - domain: MixsCompliantData slot_uri: MIXS:mimag_human_gut_data - multivalued: true range: MimagHumanGut + multivalued: true inlined: true inlined_as_list: true mimag_human_oral_data: description: Data that comply with Mimag combined with HumanOral title: MimagHumanOral data - domain: MixsCompliantData slot_uri: MIXS:mimag_human_oral_data - multivalued: true range: MimagHumanOral + multivalued: true inlined: true inlined_as_list: true mimag_human_skin_data: description: Data that comply with Mimag combined with HumanSkin title: MimagHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:mimag_human_skin_data - multivalued: true range: MimagHumanSkin + multivalued: true inlined: true inlined_as_list: true mimag_human_vaginal_data: description: Data that comply with Mimag combined with HumanVaginal title: MimagHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:mimag_human_vaginal_data - multivalued: true range: MimagHumanVaginal + multivalued: true inlined: true inlined_as_list: true mimag_hydrocarbon_resources_cores_data: description: Data that comply with Mimag combined with HydrocarbonResourcesCores title: MimagHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:mimag_hydrocarbon_resources_cores_data - multivalued: true range: MimagHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true mimag_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with Mimag combined with HydrocarbonResourcesFluidsSwabs title: MimagHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:mimag_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MimagHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true mimag_microbial_mat_biofilm_data: description: Data that comply with Mimag combined with MicrobialMatBiofilm title: MimagMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:mimag_microbial_mat_biofilm_data - multivalued: true range: MimagMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true mimag_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with Mimag combined with MiscellaneousNaturalOrArtificialEnvironment title: MimagMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimag_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MimagMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true mimag_plant_associated_data: description: Data that comply with Mimag combined with PlantAssociated title: MimagPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimag_plant_associated_data - multivalued: true range: MimagPlantAssociated + multivalued: true inlined: true inlined_as_list: true mimag_sediment_data: description: Data that comply with Mimag combined with Sediment title: MimagSediment data - domain: MixsCompliantData slot_uri: MIXS:mimag_sediment_data - multivalued: true range: MimagSediment + multivalued: true inlined: true inlined_as_list: true mimag_soil_data: description: Data that comply with Mimag combined with Soil title: MimagSoil data - domain: MixsCompliantData slot_uri: MIXS:mimag_soil_data - multivalued: true range: MimagSoil + multivalued: true inlined: true inlined_as_list: true mimag_symbiont_associated_data: description: Data that comply with Mimag combined with SymbiontAssociated title: MimagSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimag_symbiont_associated_data - multivalued: true range: MimagSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true mimag_wastewater_sludge_data: description: Data that comply with Mimag combined with WastewaterSludge title: MimagWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:mimag_wastewater_sludge_data - multivalued: true range: MimagWastewaterSludge + multivalued: true inlined: true inlined_as_list: true mimag_water_data: description: Data that comply with Mimag combined with Water title: MimagWater data - domain: MixsCompliantData slot_uri: MIXS:mimag_water_data - multivalued: true range: MimagWater + multivalued: true inlined: true inlined_as_list: true mimarks_c_data: description: Data that comply with checklist MimarksC title: MimarksC data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_data - multivalued: true range: MimarksC + multivalued: true inlined: true inlined_as_list: true mimarks_c_agriculture_data: description: Data that comply with MimarksC combined with Agriculture title: MimarksCAgriculture data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_agriculture_data - multivalued: true range: MimarksCAgriculture + multivalued: true inlined: true inlined_as_list: true mimarks_c_air_data: description: Data that comply with MimarksC combined with Air title: MimarksCAir data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_air_data - multivalued: true range: MimarksCAir + multivalued: true inlined: true inlined_as_list: true mimarks_c_built_environment_data: description: Data that comply with MimarksC combined with BuiltEnvironment title: MimarksCBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_built_environment_data - multivalued: true range: MimarksCBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true mimarks_c_food_animal_and_animal_feed_data: description: Data that comply with MimarksC combined with FoodAnimalAndAnimalFeed title: MimarksCFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_food_animal_and_animal_feed_data - multivalued: true range: MimarksCFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true mimarks_c_food_farm_environment_data: description: Data that comply with MimarksC combined with FoodFarmEnvironment title: MimarksCFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_food_farm_environment_data - multivalued: true range: MimarksCFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true mimarks_c_food_food_production_facility_data: description: Data that comply with MimarksC combined with FoodFoodProductionFacility title: MimarksCFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_food_food_production_facility_data - multivalued: true range: MimarksCFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true mimarks_c_food_human_foods_data: description: Data that comply with MimarksC combined with FoodHumanFoods title: MimarksCFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_food_human_foods_data - multivalued: true range: MimarksCFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true mimarks_c_host_associated_data: description: Data that comply with MimarksC combined with HostAssociated title: MimarksCHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_host_associated_data - multivalued: true range: MimarksCHostAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_c_human_associated_data: description: Data that comply with MimarksC combined with HumanAssociated title: MimarksCHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_human_associated_data - multivalued: true range: MimarksCHumanAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_c_human_gut_data: description: Data that comply with MimarksC combined with HumanGut title: MimarksCHumanGut data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_human_gut_data - multivalued: true range: MimarksCHumanGut + multivalued: true inlined: true inlined_as_list: true mimarks_c_human_oral_data: description: Data that comply with MimarksC combined with HumanOral title: MimarksCHumanOral data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_human_oral_data - multivalued: true range: MimarksCHumanOral + multivalued: true inlined: true inlined_as_list: true mimarks_c_human_skin_data: description: Data that comply with MimarksC combined with HumanSkin title: MimarksCHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_human_skin_data - multivalued: true range: MimarksCHumanSkin + multivalued: true inlined: true inlined_as_list: true mimarks_c_human_vaginal_data: description: Data that comply with MimarksC combined with HumanVaginal title: MimarksCHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_human_vaginal_data - multivalued: true range: MimarksCHumanVaginal + multivalued: true inlined: true inlined_as_list: true mimarks_c_hydrocarbon_resources_cores_data: description: Data that comply with MimarksC combined with HydrocarbonResourcesCores title: MimarksCHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_hydrocarbon_resources_cores_data - multivalued: true range: MimarksCHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true mimarks_c_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MimarksC combined with HydrocarbonResourcesFluidsSwabs title: MimarksCHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MimarksCHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true mimarks_c_microbial_mat_biofilm_data: description: Data that comply with MimarksC combined with MicrobialMatBiofilm title: MimarksCMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_microbial_mat_biofilm_data - multivalued: true range: MimarksCMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true mimarks_c_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment title: MimarksCMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MimarksCMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true mimarks_c_plant_associated_data: description: Data that comply with MimarksC combined with PlantAssociated title: MimarksCPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_plant_associated_data - multivalued: true range: MimarksCPlantAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_c_sediment_data: description: Data that comply with MimarksC combined with Sediment title: MimarksCSediment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_sediment_data - multivalued: true range: MimarksCSediment + multivalued: true inlined: true inlined_as_list: true mimarks_c_soil_data: description: Data that comply with MimarksC combined with Soil title: MimarksCSoil data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_soil_data - multivalued: true range: MimarksCSoil + multivalued: true inlined: true inlined_as_list: true mimarks_c_symbiont_associated_data: description: Data that comply with MimarksC combined with SymbiontAssociated title: MimarksCSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_symbiont_associated_data - multivalued: true range: MimarksCSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_c_wastewater_sludge_data: description: Data that comply with MimarksC combined with WastewaterSludge title: MimarksCWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_wastewater_sludge_data - multivalued: true range: MimarksCWastewaterSludge + multivalued: true inlined: true inlined_as_list: true mimarks_c_water_data: description: Data that comply with MimarksC combined with Water title: MimarksCWater data - domain: MixsCompliantData slot_uri: MIXS:mimarks_c_water_data - multivalued: true range: MimarksCWater + multivalued: true inlined: true inlined_as_list: true mimarks_s_data: description: Data that comply with checklist MimarksS title: MimarksS data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_data - multivalued: true range: MimarksS + multivalued: true inlined: true inlined_as_list: true mimarks_s_agriculture_data: description: Data that comply with MimarksS combined with Agriculture title: MimarksSAgriculture data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_agriculture_data - multivalued: true range: MimarksSAgriculture + multivalued: true inlined: true inlined_as_list: true mimarks_s_air_data: description: Data that comply with MimarksS combined with Air title: MimarksSAir data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_air_data - multivalued: true range: MimarksSAir + multivalued: true inlined: true inlined_as_list: true mimarks_s_built_environment_data: description: Data that comply with MimarksS combined with BuiltEnvironment title: MimarksSBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_built_environment_data - multivalued: true range: MimarksSBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true mimarks_s_food_animal_and_animal_feed_data: description: Data that comply with MimarksS combined with FoodAnimalAndAnimalFeed title: MimarksSFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_food_animal_and_animal_feed_data - multivalued: true range: MimarksSFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true mimarks_s_food_farm_environment_data: description: Data that comply with MimarksS combined with FoodFarmEnvironment title: MimarksSFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_food_farm_environment_data - multivalued: true range: MimarksSFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true mimarks_s_food_food_production_facility_data: description: Data that comply with MimarksS combined with FoodFoodProductionFacility title: MimarksSFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_food_food_production_facility_data - multivalued: true range: MimarksSFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true mimarks_s_food_human_foods_data: description: Data that comply with MimarksS combined with FoodHumanFoods title: MimarksSFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_food_human_foods_data - multivalued: true range: MimarksSFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true mimarks_s_host_associated_data: description: Data that comply with MimarksS combined with HostAssociated title: MimarksSHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_host_associated_data - multivalued: true range: MimarksSHostAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_s_human_associated_data: description: Data that comply with MimarksS combined with HumanAssociated title: MimarksSHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_human_associated_data - multivalued: true range: MimarksSHumanAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_s_human_gut_data: description: Data that comply with MimarksS combined with HumanGut title: MimarksSHumanGut data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_human_gut_data - multivalued: true range: MimarksSHumanGut + multivalued: true inlined: true inlined_as_list: true mimarks_s_human_oral_data: description: Data that comply with MimarksS combined with HumanOral title: MimarksSHumanOral data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_human_oral_data - multivalued: true range: MimarksSHumanOral + multivalued: true inlined: true inlined_as_list: true mimarks_s_human_skin_data: description: Data that comply with MimarksS combined with HumanSkin title: MimarksSHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_human_skin_data - multivalued: true range: MimarksSHumanSkin + multivalued: true inlined: true inlined_as_list: true mimarks_s_human_vaginal_data: description: Data that comply with MimarksS combined with HumanVaginal title: MimarksSHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_human_vaginal_data - multivalued: true range: MimarksSHumanVaginal + multivalued: true inlined: true inlined_as_list: true mimarks_s_hydrocarbon_resources_cores_data: description: Data that comply with MimarksS combined with HydrocarbonResourcesCores title: MimarksSHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_hydrocarbon_resources_cores_data - multivalued: true range: MimarksSHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true mimarks_s_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with MimarksS combined with HydrocarbonResourcesFluidsSwabs title: MimarksSHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MimarksSHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true mimarks_s_microbial_mat_biofilm_data: description: Data that comply with MimarksS combined with MicrobialMatBiofilm title: MimarksSMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_microbial_mat_biofilm_data - multivalued: true range: MimarksSMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true mimarks_s_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment title: MimarksSMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MimarksSMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true mimarks_s_plant_associated_data: description: Data that comply with MimarksS combined with PlantAssociated title: MimarksSPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_plant_associated_data - multivalued: true range: MimarksSPlantAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_s_sediment_data: description: Data that comply with MimarksS combined with Sediment title: MimarksSSediment data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_sediment_data - multivalued: true range: MimarksSSediment + multivalued: true inlined: true inlined_as_list: true mimarks_s_soil_data: description: Data that comply with MimarksS combined with Soil title: MimarksSSoil data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_soil_data - multivalued: true range: MimarksSSoil + multivalued: true inlined: true inlined_as_list: true mimarks_s_symbiont_associated_data: description: Data that comply with MimarksS combined with SymbiontAssociated title: MimarksSSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_symbiont_associated_data - multivalued: true range: MimarksSSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true mimarks_s_wastewater_sludge_data: description: Data that comply with MimarksS combined with WastewaterSludge title: MimarksSWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_wastewater_sludge_data - multivalued: true range: MimarksSWastewaterSludge + multivalued: true inlined: true inlined_as_list: true mimarks_s_water_data: description: Data that comply with MimarksS combined with Water title: MimarksSWater data - domain: MixsCompliantData slot_uri: MIXS:mimarks_s_water_data - multivalued: true range: MimarksSWater + multivalued: true inlined: true inlined_as_list: true mims_data: description: Data that comply with checklist Mims title: Mims data - domain: MixsCompliantData slot_uri: MIXS:mims_data - multivalued: true range: Mims + multivalued: true inlined: true inlined_as_list: true mims_agriculture_data: description: Data that comply with Mims combined with Agriculture title: MimsAgriculture data - domain: MixsCompliantData slot_uri: MIXS:mims_agriculture_data - multivalued: true range: MimsAgriculture + multivalued: true inlined: true inlined_as_list: true mims_air_data: description: Data that comply with Mims combined with Air title: MimsAir data - domain: MixsCompliantData slot_uri: MIXS:mims_air_data - multivalued: true range: MimsAir + multivalued: true inlined: true inlined_as_list: true mims_built_environment_data: description: Data that comply with Mims combined with BuiltEnvironment title: MimsBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mims_built_environment_data - multivalued: true range: MimsBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true mims_food_animal_and_animal_feed_data: description: Data that comply with Mims combined with FoodAnimalAndAnimalFeed title: MimsFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:mims_food_animal_and_animal_feed_data - multivalued: true range: MimsFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true mims_food_farm_environment_data: description: Data that comply with Mims combined with FoodFarmEnvironment title: MimsFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mims_food_farm_environment_data - multivalued: true range: MimsFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true mims_food_food_production_facility_data: description: Data that comply with Mims combined with FoodFoodProductionFacility title: MimsFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:mims_food_food_production_facility_data - multivalued: true range: MimsFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true mims_food_human_foods_data: description: Data that comply with Mims combined with FoodHumanFoods title: MimsFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:mims_food_human_foods_data - multivalued: true range: MimsFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true mims_host_associated_data: description: Data that comply with Mims combined with HostAssociated title: MimsHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:mims_host_associated_data - multivalued: true range: MimsHostAssociated + multivalued: true inlined: true inlined_as_list: true mims_human_associated_data: description: Data that comply with Mims combined with HumanAssociated title: MimsHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:mims_human_associated_data - multivalued: true range: MimsHumanAssociated + multivalued: true inlined: true inlined_as_list: true mims_human_gut_data: description: Data that comply with Mims combined with HumanGut title: MimsHumanGut data - domain: MixsCompliantData slot_uri: MIXS:mims_human_gut_data - multivalued: true range: MimsHumanGut + multivalued: true inlined: true inlined_as_list: true mims_human_oral_data: description: Data that comply with Mims combined with HumanOral title: MimsHumanOral data - domain: MixsCompliantData slot_uri: MIXS:mims_human_oral_data - multivalued: true range: MimsHumanOral + multivalued: true inlined: true inlined_as_list: true mims_human_skin_data: description: Data that comply with Mims combined with HumanSkin title: MimsHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:mims_human_skin_data - multivalued: true range: MimsHumanSkin + multivalued: true inlined: true inlined_as_list: true mims_human_vaginal_data: description: Data that comply with Mims combined with HumanVaginal title: MimsHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:mims_human_vaginal_data - multivalued: true range: MimsHumanVaginal + multivalued: true inlined: true inlined_as_list: true mims_hydrocarbon_resources_cores_data: description: Data that comply with Mims combined with HydrocarbonResourcesCores title: MimsHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:mims_hydrocarbon_resources_cores_data - multivalued: true range: MimsHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true mims_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with Mims combined with HydrocarbonResourcesFluidsSwabs title: MimsHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:mims_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MimsHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true mims_microbial_mat_biofilm_data: description: Data that comply with Mims combined with MicrobialMatBiofilm title: MimsMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:mims_microbial_mat_biofilm_data - multivalued: true range: MimsMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true mims_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with Mims combined with MiscellaneousNaturalOrArtificialEnvironment title: MimsMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:mims_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MimsMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true mims_plant_associated_data: description: Data that comply with Mims combined with PlantAssociated title: MimsPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:mims_plant_associated_data - multivalued: true range: MimsPlantAssociated + multivalued: true inlined: true inlined_as_list: true mims_sediment_data: description: Data that comply with Mims combined with Sediment title: MimsSediment data - domain: MixsCompliantData slot_uri: MIXS:mims_sediment_data - multivalued: true range: MimsSediment + multivalued: true inlined: true inlined_as_list: true mims_soil_data: description: Data that comply with Mims combined with Soil title: MimsSoil data - domain: MixsCompliantData slot_uri: MIXS:mims_soil_data - multivalued: true range: MimsSoil + multivalued: true inlined: true inlined_as_list: true mims_symbiont_associated_data: description: Data that comply with Mims combined with SymbiontAssociated title: MimsSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:mims_symbiont_associated_data - multivalued: true range: MimsSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true mims_wastewater_sludge_data: description: Data that comply with Mims combined with WastewaterSludge title: MimsWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:mims_wastewater_sludge_data - multivalued: true range: MimsWastewaterSludge + multivalued: true inlined: true inlined_as_list: true mims_water_data: description: Data that comply with Mims combined with Water title: MimsWater data - domain: MixsCompliantData slot_uri: MIXS:mims_water_data - multivalued: true range: MimsWater + multivalued: true inlined: true inlined_as_list: true misag_data: description: Data that comply with checklist Misag title: Misag data - domain: MixsCompliantData slot_uri: MIXS:misag_data - multivalued: true range: Misag + multivalued: true inlined: true inlined_as_list: true misag_agriculture_data: description: Data that comply with Misag combined with Agriculture title: MisagAgriculture data - domain: MixsCompliantData slot_uri: MIXS:misag_agriculture_data - multivalued: true range: MisagAgriculture + multivalued: true inlined: true inlined_as_list: true misag_air_data: description: Data that comply with Misag combined with Air title: MisagAir data - domain: MixsCompliantData slot_uri: MIXS:misag_air_data - multivalued: true range: MisagAir + multivalued: true inlined: true inlined_as_list: true misag_built_environment_data: description: Data that comply with Misag combined with BuiltEnvironment title: MisagBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:misag_built_environment_data - multivalued: true range: MisagBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true misag_food_animal_and_animal_feed_data: description: Data that comply with Misag combined with FoodAnimalAndAnimalFeed title: MisagFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:misag_food_animal_and_animal_feed_data - multivalued: true range: MisagFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true misag_food_farm_environment_data: description: Data that comply with Misag combined with FoodFarmEnvironment title: MisagFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:misag_food_farm_environment_data - multivalued: true range: MisagFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true misag_food_food_production_facility_data: description: Data that comply with Misag combined with FoodFoodProductionFacility title: MisagFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:misag_food_food_production_facility_data - multivalued: true range: MisagFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true misag_food_human_foods_data: description: Data that comply with Misag combined with FoodHumanFoods title: MisagFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:misag_food_human_foods_data - multivalued: true range: MisagFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true misag_host_associated_data: description: Data that comply with Misag combined with HostAssociated title: MisagHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:misag_host_associated_data - multivalued: true range: MisagHostAssociated + multivalued: true inlined: true inlined_as_list: true misag_human_associated_data: description: Data that comply with Misag combined with HumanAssociated title: MisagHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:misag_human_associated_data - multivalued: true range: MisagHumanAssociated + multivalued: true inlined: true inlined_as_list: true misag_human_gut_data: description: Data that comply with Misag combined with HumanGut title: MisagHumanGut data - domain: MixsCompliantData slot_uri: MIXS:misag_human_gut_data - multivalued: true range: MisagHumanGut + multivalued: true inlined: true inlined_as_list: true misag_human_oral_data: description: Data that comply with Misag combined with HumanOral title: MisagHumanOral data - domain: MixsCompliantData slot_uri: MIXS:misag_human_oral_data - multivalued: true range: MisagHumanOral + multivalued: true inlined: true inlined_as_list: true misag_human_skin_data: description: Data that comply with Misag combined with HumanSkin title: MisagHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:misag_human_skin_data - multivalued: true range: MisagHumanSkin + multivalued: true inlined: true inlined_as_list: true misag_human_vaginal_data: description: Data that comply with Misag combined with HumanVaginal title: MisagHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:misag_human_vaginal_data - multivalued: true range: MisagHumanVaginal + multivalued: true inlined: true inlined_as_list: true misag_hydrocarbon_resources_cores_data: description: Data that comply with Misag combined with HydrocarbonResourcesCores title: MisagHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:misag_hydrocarbon_resources_cores_data - multivalued: true range: MisagHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true misag_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with Misag combined with HydrocarbonResourcesFluidsSwabs title: MisagHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:misag_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MisagHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true misag_microbial_mat_biofilm_data: description: Data that comply with Misag combined with MicrobialMatBiofilm title: MisagMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:misag_microbial_mat_biofilm_data - multivalued: true range: MisagMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true misag_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with Misag combined with MiscellaneousNaturalOrArtificialEnvironment title: MisagMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:misag_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MisagMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true misag_plant_associated_data: description: Data that comply with Misag combined with PlantAssociated title: MisagPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:misag_plant_associated_data - multivalued: true range: MisagPlantAssociated + multivalued: true inlined: true inlined_as_list: true misag_sediment_data: description: Data that comply with Misag combined with Sediment title: MisagSediment data - domain: MixsCompliantData slot_uri: MIXS:misag_sediment_data - multivalued: true range: MisagSediment + multivalued: true inlined: true inlined_as_list: true misag_soil_data: description: Data that comply with Misag combined with Soil title: MisagSoil data - domain: MixsCompliantData slot_uri: MIXS:misag_soil_data - multivalued: true range: MisagSoil + multivalued: true inlined: true inlined_as_list: true misag_symbiont_associated_data: description: Data that comply with Misag combined with SymbiontAssociated title: MisagSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:misag_symbiont_associated_data - multivalued: true range: MisagSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true misag_wastewater_sludge_data: description: Data that comply with Misag combined with WastewaterSludge title: MisagWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:misag_wastewater_sludge_data - multivalued: true range: MisagWastewaterSludge + multivalued: true inlined: true inlined_as_list: true misag_water_data: description: Data that comply with Misag combined with Water title: MisagWater data - domain: MixsCompliantData slot_uri: MIXS:misag_water_data - multivalued: true range: MisagWater + multivalued: true inlined: true inlined_as_list: true miuvig_data: description: Data that comply with checklist Miuvig title: Miuvig data - domain: MixsCompliantData slot_uri: MIXS:miuvig_data - multivalued: true range: Miuvig + multivalued: true inlined: true inlined_as_list: true miuvig_agriculture_data: description: Data that comply with Miuvig combined with Agriculture title: MiuvigAgriculture data - domain: MixsCompliantData slot_uri: MIXS:miuvig_agriculture_data - multivalued: true range: MiuvigAgriculture + multivalued: true inlined: true inlined_as_list: true miuvig_air_data: description: Data that comply with Miuvig combined with Air title: MiuvigAir data - domain: MixsCompliantData slot_uri: MIXS:miuvig_air_data - multivalued: true range: MiuvigAir + multivalued: true inlined: true inlined_as_list: true miuvig_built_environment_data: description: Data that comply with Miuvig combined with BuiltEnvironment title: MiuvigBuiltEnvironment data - domain: MixsCompliantData slot_uri: MIXS:miuvig_built_environment_data - multivalued: true range: MiuvigBuiltEnvironment + multivalued: true inlined: true inlined_as_list: true miuvig_food_animal_and_animal_feed_data: description: Data that comply with Miuvig combined with FoodAnimalAndAnimalFeed title: MiuvigFoodAnimalAndAnimalFeed data - domain: MixsCompliantData slot_uri: MIXS:miuvig_food_animal_and_animal_feed_data - multivalued: true range: MiuvigFoodAnimalAndAnimalFeed + multivalued: true inlined: true inlined_as_list: true miuvig_food_farm_environment_data: description: Data that comply with Miuvig combined with FoodFarmEnvironment title: MiuvigFoodFarmEnvironment data - domain: MixsCompliantData slot_uri: MIXS:miuvig_food_farm_environment_data - multivalued: true range: MiuvigFoodFarmEnvironment + multivalued: true inlined: true inlined_as_list: true miuvig_food_food_production_facility_data: description: Data that comply with Miuvig combined with FoodFoodProductionFacility title: MiuvigFoodFoodProductionFacility data - domain: MixsCompliantData slot_uri: MIXS:miuvig_food_food_production_facility_data - multivalued: true range: MiuvigFoodFoodProductionFacility + multivalued: true inlined: true inlined_as_list: true miuvig_food_human_foods_data: description: Data that comply with Miuvig combined with FoodHumanFoods title: MiuvigFoodHumanFoods data - domain: MixsCompliantData slot_uri: MIXS:miuvig_food_human_foods_data - multivalued: true range: MiuvigFoodHumanFoods + multivalued: true inlined: true inlined_as_list: true miuvig_host_associated_data: description: Data that comply with Miuvig combined with HostAssociated title: MiuvigHostAssociated data - domain: MixsCompliantData slot_uri: MIXS:miuvig_host_associated_data - multivalued: true range: MiuvigHostAssociated + multivalued: true inlined: true inlined_as_list: true miuvig_human_associated_data: description: Data that comply with Miuvig combined with HumanAssociated title: MiuvigHumanAssociated data - domain: MixsCompliantData slot_uri: MIXS:miuvig_human_associated_data - multivalued: true range: MiuvigHumanAssociated + multivalued: true inlined: true inlined_as_list: true miuvig_human_gut_data: description: Data that comply with Miuvig combined with HumanGut title: MiuvigHumanGut data - domain: MixsCompliantData slot_uri: MIXS:miuvig_human_gut_data - multivalued: true range: MiuvigHumanGut + multivalued: true inlined: true inlined_as_list: true miuvig_human_oral_data: description: Data that comply with Miuvig combined with HumanOral title: MiuvigHumanOral data - domain: MixsCompliantData slot_uri: MIXS:miuvig_human_oral_data - multivalued: true range: MiuvigHumanOral + multivalued: true inlined: true inlined_as_list: true miuvig_human_skin_data: description: Data that comply with Miuvig combined with HumanSkin title: MiuvigHumanSkin data - domain: MixsCompliantData slot_uri: MIXS:miuvig_human_skin_data - multivalued: true range: MiuvigHumanSkin + multivalued: true inlined: true inlined_as_list: true miuvig_human_vaginal_data: description: Data that comply with Miuvig combined with HumanVaginal title: MiuvigHumanVaginal data - domain: MixsCompliantData slot_uri: MIXS:miuvig_human_vaginal_data - multivalued: true range: MiuvigHumanVaginal + multivalued: true inlined: true inlined_as_list: true miuvig_hydrocarbon_resources_cores_data: description: Data that comply with Miuvig combined with HydrocarbonResourcesCores title: MiuvigHydrocarbonResourcesCores data - domain: MixsCompliantData slot_uri: MIXS:miuvig_hydrocarbon_resources_cores_data - multivalued: true range: MiuvigHydrocarbonResourcesCores + multivalued: true inlined: true inlined_as_list: true miuvig_hydrocarbon_resources_fluids_swabs_data: description: Data that comply with Miuvig combined with HydrocarbonResourcesFluidsSwabs title: MiuvigHydrocarbonResourcesFluidsSwabs data - domain: MixsCompliantData slot_uri: MIXS:miuvig_hydrocarbon_resources_fluids_swabs_data - multivalued: true range: MiuvigHydrocarbonResourcesFluidsSwabs + multivalued: true inlined: true inlined_as_list: true miuvig_microbial_mat_biofilm_data: description: Data that comply with Miuvig combined with MicrobialMatBiofilm title: MiuvigMicrobialMatBiofilm data - domain: MixsCompliantData slot_uri: MIXS:miuvig_microbial_mat_biofilm_data - multivalued: true range: MiuvigMicrobialMatBiofilm + multivalued: true inlined: true inlined_as_list: true miuvig_miscellaneous_natural_or_artificial_environment_data: description: Data that comply with Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment title: MiuvigMiscellaneousNaturalOrArtificialEnvironment data - domain: MixsCompliantData slot_uri: MIXS:miuvig_miscellaneous_natural_or_artificial_environment_data - multivalued: true range: MiuvigMiscellaneousNaturalOrArtificialEnvironment + multivalued: true inlined: true inlined_as_list: true miuvig_plant_associated_data: description: Data that comply with Miuvig combined with PlantAssociated title: MiuvigPlantAssociated data - domain: MixsCompliantData slot_uri: MIXS:miuvig_plant_associated_data - multivalued: true range: MiuvigPlantAssociated + multivalued: true inlined: true inlined_as_list: true miuvig_sediment_data: description: Data that comply with Miuvig combined with Sediment title: MiuvigSediment data - domain: MixsCompliantData slot_uri: MIXS:miuvig_sediment_data - multivalued: true range: MiuvigSediment + multivalued: true inlined: true inlined_as_list: true miuvig_soil_data: description: Data that comply with Miuvig combined with Soil title: MiuvigSoil data - domain: MixsCompliantData slot_uri: MIXS:miuvig_soil_data - multivalued: true range: MiuvigSoil + multivalued: true inlined: true inlined_as_list: true miuvig_symbiont_associated_data: description: Data that comply with Miuvig combined with SymbiontAssociated title: MiuvigSymbiontAssociated data - domain: MixsCompliantData slot_uri: MIXS:miuvig_symbiont_associated_data - multivalued: true range: MiuvigSymbiontAssociated + multivalued: true inlined: true inlined_as_list: true miuvig_wastewater_sludge_data: description: Data that comply with Miuvig combined with WastewaterSludge title: MiuvigWastewaterSludge data - domain: MixsCompliantData slot_uri: MIXS:miuvig_wastewater_sludge_data - multivalued: true range: MiuvigWastewaterSludge + multivalued: true inlined: true inlined_as_list: true miuvig_water_data: description: Data that comply with Miuvig combined with Water title: MiuvigWater data - domain: MixsCompliantData slot_uri: MIXS:miuvig_water_data - multivalued: true range: MiuvigWater + multivalued: true inlined: true inlined_as_list: true HACCP_term: @@ -3743,8 +3460,8 @@ slots: - food - term slot_uri: MIXS:0001215 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -3752,10 +3469,12 @@ slots: partial_match: true IFSAC_category: annotations: - Expected_value: IFSAC term + Expected_value: + tag: Expected_value + value: IFSAC term description: 'The IFSAC food categorization scheme has five distinct levels to - which foods can be assigned, depending upon the type of food. First, foods are - assigned to one of four food groups (aquatic animals, land animals, plants, + which foods can be assigned, depending upon the type of food. First, foods + are assigned to one of four food groups (aquatic animals, land animals, plants, and other). Food groups include increasingly specific food categories; dairy, eggs, meat and poultry, and game are in the land animal food group, and the category meat and poultry is further subdivided into more specific categories @@ -3770,13 +3489,15 @@ slots: - value: Plants:Produce:Vegetables:Herbs:Dried Herbs keywords: - food - range: string slot_uri: MIXS:0001179 - multivalued: true + range: string required: true + multivalued: true abs_air_humidity: annotations: - Preferred_unit: gram per gram, kilogram per kilogram, kilogram, pound + Preferred_unit: + tag: Preferred_unit + value: gram per gram, kilogram per kilogram, kilogram, pound description: Actual mass of water vapor - mh20 - present in the air water vapor mixture title: absolute air humidity @@ -3790,7 +3511,7 @@ slots: range: string required: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -3804,15 +3525,16 @@ slots: - value: AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT in_subset: - sequencing + slot_uri: MIXS:0000048 + pattern: ^[ACGTRKSYMWBHDVN]+;[ACGTRKSYMWBHDVN]+$ structured_pattern: syntax: ^{adapter_A_DNA_sequence};{adapter_B_DNA_sequence}$ interpolated: true partial_match: true - slot_uri: MIXS:0000048 add_recov_method: description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed - for increase of hydrocarbon recovery from resource and start date for each one - of them. If "other" is specified, please propose entry in "additional info" + for increase of hydrocarbon recovery from resource and start date for each + one of them. If "other" is specified, please propose entry in "additional info" field title: secondary and tertiary recovery methods and start date examples: @@ -3823,15 +3545,17 @@ slots: - recover - secondary - start + slot_uri: MIXS:0001009 + required: true + pattern: ^(Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer + Addition|Surfactant Addition|Not Applicable|other);(\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$$ structured_pattern: - syntax: '^({add_recov_methods});{date_time_stamp}$' + syntax: ^({add_recov_methods});{date_time_stamp}$ interpolated: true partial_match: true - slot_uri: MIXS:0001009 - required: true additional_info: - description: Information that doesn't fit anywhere else. Can also be used to propose - new entries for fields with controlled vocabulary + description: Information that doesn't fit anywhere else. Can also be used to + propose new entries for fields with controlled vocabulary title: additional info keywords: - information @@ -3840,11 +3564,12 @@ slots: address: description: The street name and building number where the sampling occurred title: address + slot_uri: MIXS:0000218 + pattern: ^[1-9][0-9]* .*}$ structured_pattern: syntax: ^{integer} {text}}$ interpolated: true partial_match: true - slot_uri: MIXS:0000218 adj_room: description: List of rooms (room number, room name) immediately adjacent to the sampling room @@ -3861,7 +3586,9 @@ slots: partial_match: true adjacent_environment: annotations: - Expected_value: ENVO_01001110 or ENVO_00000070 + Expected_value: + tag: Expected_value + value: ENVO_01001110 or ENVO_00000070 description: Description of the environmental system or features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple @@ -3887,19 +3614,22 @@ slots: range: AeroStrucEnum agrochem_addition: annotations: - Preferred_unit: gram, mole per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Addition of fertilizers, pesticides, etc. - amount and time of applications title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 keywords: - history + slot_uri: MIXS:0000639 + multivalued: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+);(\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$$ structured_pattern: syntax: ^{agrochemical_name};{amount} {unit};{date_time_stamp}$ interpolated: true partial_match: true - slot_uri: MIXS:0000639 - multivalued: true air_PM_concen: description: Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can @@ -3912,15 +3642,18 @@ slots: - concentration - particle - particulate + slot_uri: MIXS:0000108 + multivalued: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ structured_pattern: syntax: ^{particulate_matter_name};{float} {unit}$ interpolated: true partial_match: true - slot_uri: MIXS:0000108 - multivalued: true air_flow_impede: annotations: - Expected_value: enumeration;obstruction type; distance from sampling device + Expected_value: + tag: Expected_value + value: enumeration;obstruction type; distance from sampling device description: Presence of objects in the area that would influence or impede air flow through the air filter title: local air flow impediments @@ -3933,7 +3666,9 @@ slots: multivalued: true air_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Temperature of the air at the time of sampling title: air temperature keywords: @@ -3942,19 +3677,23 @@ slots: slot_uri: MIXS:0000124 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true air_temp_regm: annotations: - Expected_value: temperature value;treatment interval and duration - Preferred_unit: meter + Expected_value: + tag: Expected_value + value: temperature value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: meter description: Information about treatment involving an exposure to varying temperatures; - should include the temperature, treatment regimen including how many times the - treatment was repeated, how long each treatment lasted, and the start and end - time of the entire treatment; can include different temperature regimens + should include the temperature, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include different temperature regimens title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -3967,7 +3706,9 @@ slots: multivalued: true al_sat: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: Aluminum saturation (esp. For tropical soils) title: extreme_unusual_properties/Al saturation keywords: @@ -3978,7 +3719,7 @@ slots: slot_uri: MIXS:0000607 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4001,7 +3742,9 @@ slots: partial_match: true alkalinity: annotations: - Preferred_unit: milliequivalent per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milliequivalent per liter, milligram per liter description: Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate title: alkalinity @@ -4012,7 +3755,7 @@ slots: slot_uri: MIXS:0000421 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4035,19 +3778,21 @@ slots: slot_uri: MIXS:0000490 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true alt: annotations: - Preferred_unit: meter + Preferred_unit: + tag: Preferred_unit + value: meter description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. - In this context, the altitude measurement is the vertical distance between the - earth's surface above sea level and the sampled position in the air + In this context, the altitude measurement is the vertical distance between + the earth's surface above sea level and the sampled position in the air title: altitude examples: - value: 100 meter @@ -4056,14 +3801,16 @@ slots: slot_uri: MIXS:0000094 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true aminopept_act: annotations: - Preferred_unit: mole per liter per hour + Preferred_unit: + tag: Preferred_unit + value: mole per liter per hour description: Measurement of aminopeptidase activity title: aminopeptidase activity examples: @@ -4071,14 +3818,16 @@ slots: slot_uri: MIXS:0000172 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ammonium: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: Concentration of ammonium in the sample title: ammonium examples: @@ -4086,7 +3835,7 @@ slots: slot_uri: MIXS:0000427 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4098,7 +3847,9 @@ slots: range: string amount_light: annotations: - Preferred_unit: lux, lumens per square meter + Preferred_unit: + tag: Preferred_unit + value: lux, lumens per square meter description: The unit of illuminance and luminous emittance, measuring luminous flux per unit area title: amount of light @@ -4107,7 +3858,7 @@ slots: slot_uri: MIXS:0000140 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4122,9 +3873,10 @@ slots: slot_uri: MIXS:0000247 range: string anim_water_method: - description: Description of the equipment or method used to distribute water to - livestock. This field accepts termed listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653). - Multiple terms can be separated by pipes + description: Description of the equipment or method used to distribute water + to livestock. This field accepts termed listed under water delivery equipment + (http://opendata.inra.fr/EOL/EOL_0001653). Multiple terms can be separated + by pipes title: animal water delivery method examples: - value: water trough [EOL:0001618] @@ -4134,16 +3886,16 @@ slots: - method - water slot_uri: MIXS:0001115 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true animal_am: - description: The name(s) (generic or brand) of the antimicrobial(s) given to the - food animal within the last 30 days + description: The name(s) (generic or brand) of the antimicrobial(s) given to + the food animal within the last 30 days title: food animal antimicrobial examples: - value: tetracycline @@ -4165,14 +3917,15 @@ slots: - duration - food - period + slot_uri: MIXS:0001244 + pattern: ^[-+]?[0-9]*\.?[0-9]+ days$ structured_pattern: syntax: ^{float} days$ interpolated: true partial_match: true - slot_uri: MIXS:0001244 animal_am_freq: - description: The frequency per day that the antimicrobial was administered to the - food animal + description: The frequency per day that the antimicrobial was administered to + the food animal title: food animal antimicrobial frequency examples: - value: '1.5' @@ -4184,7 +3937,7 @@ slots: slot_uri: MIXS:0001245 range: float pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4232,9 +3985,11 @@ slots: range: AnimalBodyCondEnum animal_diet: annotations: - Expected_value: text or FOODON_03309997 - description: If the isolate is from a food animal, the type of diet eaten by the - food animal. Please list the main food staple and the setting, if appropriate. For + Expected_value: + tag: Expected_value + value: text or FOODON_03309997 + description: If the isolate is from a food animal, the type of diet eaten by + the food animal. Please list the main food staple and the setting, if appropriate. For a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple terms may apply and can be separated by pipes |Food product for animal covers foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997. @@ -4249,12 +4004,14 @@ slots: - diet - food - source - range: string slot_uri: MIXS:0001130 + range: string multivalued: true animal_feed_equip: annotations: - Expected_value: EOL:0001757 + Expected_value: + tag: Expected_value + value: EOL:0001757 description: Description of the feeding equipment used for livestock. This field accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757). Multiple terms can be separated by pipes @@ -4264,12 +4021,13 @@ slots: keywords: - animal - equipment + slot_uri: MIXS:0001113 + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true - slot_uri: MIXS:0001113 - multivalued: true animal_group_size: description: The number of food animals of the same species that are maintained together as a unit, i.e. a herd or flock @@ -4291,8 +4049,8 @@ slots: keywords: - animal slot_uri: MIXS:0001180 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -4313,8 +4071,8 @@ slots: - sample - source slot_uri: MIXS:0001114 - multivalued: true range: string + multivalued: true pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ structured_pattern: syntax: ^({termLabel} \[{termID}\])|{integer}$ @@ -4333,7 +4091,9 @@ slots: range: AnimalSexEnum annot: annotations: - Expected_value: name of tool or pipeline used, or annotation source description + Expected_value: + tag: Expected_value + value: name of tool or pipeline used, or annotation source description description: Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter @@ -4342,11 +4102,13 @@ slots: - value: prokka in_subset: - sequencing - range: string slot_uri: MIXS:0000059 + range: string annual_precpt: annotations: - Preferred_unit: millimeter + Preferred_unit: + tag: Preferred_unit + value: millimeter description: The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps title: mean annual precipitation @@ -4355,14 +4117,16 @@ slots: slot_uri: MIXS:0000644 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annual_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Mean annual temperature title: mean annual temperature examples: @@ -4373,15 +4137,19 @@ slots: slot_uri: MIXS:0000642 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true antibiotic_regm: annotations: - Expected_value: antibiotic name;antibiotic amount;treatment interval and duration - Preferred_unit: milligram + Expected_value: + tag: Expected_value + value: antibiotic name;antibiotic amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: milligram description: Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment @@ -4397,7 +4165,9 @@ slots: multivalued: true api: annotations: - Preferred_unit: degrees API + Preferred_unit: + tag: Preferred_unit + value: degrees API description: 'API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1 API)' @@ -4408,7 +4178,7 @@ slots: range: string required: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4423,8 +4193,12 @@ slots: range: ArchStrucEnum area_samp_size: annotations: - Expected_value: measurement value - Preferred_unit: centimeter + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: centimeter description: The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected title: area sampled size @@ -4438,41 +4212,47 @@ slots: slot_uri: MIXS:0001255 aromatics_pc: annotations: - Preferred_unit: percent + Preferred_unit: + tag: Preferred_unit + value: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most - popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: - https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: aromatics wt% slot_uri: MIXS:0000133 range: string recommended: true - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true asphaltenes_pc: annotations: - Preferred_unit: percent + Preferred_unit: + tag: Preferred_unit + value: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most - popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: - https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: asphaltenes wt% slot_uri: MIXS:0000135 range: string recommended: true - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true assembly_name: annotations: - Expected_value: name and version of assembly + Expected_value: + tag: Expected_value + value: name and version of assembly description: Name/version of the assembly provided by the submitter that is used in the genome browsers and in the community title: assembly name @@ -4487,21 +4267,20 @@ slots: for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated, contiguous sequence per replicon without gaps or ambiguities with a consensus error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments - where gaps span repetitive regions. Presence of the large subunit (LSU) RNA, small - subunit (SSU) and the presence of 5.8S rRNA or 5S rRNA depending on whether it is - a eukaryotic or prokaryotic genome, respectively. - Medium Quality Draft:Many fragments with little to no - review of assembly other than reporting of standard assembly statistics. Low - Quality Draft:Many fragments with little to no review of assembly other than - reporting of standard assembly statistics. Assembly statistics include, but - are not limited to total assembly size, number of contigs, contig N50/L50, and - maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence - per replicon without gaps or ambiguities, with extensive manual review and editing - to annotate putative gene functions and transcriptional units. High-quality - draft genome: One or multiple fragments, totaling 90% of the expected genome - or replicon sequence or predicted complete. Genome fragment(s): One or multiple - fragments, totalling < 90% of the expected genome or replicon sequence, or for - which no genome size could be estimated' + where gaps span repetitive regions. Presence of the large subunit (LSU) RNA, + small subunit (SSU) and the presence of 5.8S rRNA or 5S rRNA depending on whether + it is a eukaryotic or prokaryotic genome, respectively. Medium Quality Draft:Many + fragments with little to no review of assembly other than reporting of standard + assembly statistics. Low Quality Draft:Many fragments with little to no review + of assembly other than reporting of standard assembly statistics. Assembly + statistics include, but are not limited to total assembly size, number of contigs, + contig N50/L50, and maximum contig length. For MIUVIG; Finished: Single, validated, + contiguous sequence per replicon without gaps or ambiguities, with extensive + manual review and editing to annotate putative gene functions and transcriptional + units. High-quality draft genome: One or multiple fragments, totaling 90% + of the expected genome or replicon sequence or predicted complete. Genome fragment(s): + One or multiple fragments, totalling < 90% of the expected genome or replicon + sequence, or for which no genome size could be estimated' title: assembly quality examples: - value: High-quality draft genome @@ -4509,13 +4288,14 @@ slots: - sequencing keywords: - quality - range: AssemblyQualEnum slot_uri: MIXS:0000056 + range: AssemblyQualEnum assembly_software: description: Tool(s) used for assembly, including version number and parameters title: assembly software examples: - - value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise + - value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters + otherwise in_subset: - sequencing keywords: @@ -4529,7 +4309,9 @@ slots: partial_match: true associated_resource: annotations: - Expected_value: reference to resource + Expected_value: + tag: Expected_value + value: reference to resource description: A related resource that is referenced, cited, or otherwise associated to the sequence title: relevant electronic resources @@ -4541,11 +4323,13 @@ slots: - resource string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000091 - multivalued: true recommended: true + multivalued: true association_duration: annotations: - Preferred_unit: year, day, hour + Preferred_unit: + tag: Preferred_unit + value: year, day, hour description: Time spent in host of the symbiotic organism at the time of sampling; relevant scale depends on symbiotic organism and study title: duration of association with the host @@ -4557,14 +4341,16 @@ slots: slot_uri: MIXS:0001299 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true atmospheric_data: annotations: - Expected_value: atmospheric data name;measurement value + Expected_value: + tag: Expected_value + value: atmospheric data name;measurement value description: Measurement of atmospheric data; can include multiple data title: atmospheric data examples: @@ -4574,7 +4360,9 @@ slots: multivalued: true avg_dew_point: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day title: average dew point @@ -4585,7 +4373,7 @@ slots: slot_uri: MIXS:0000141 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4600,7 +4388,9 @@ slots: range: float avg_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day title: average temperature @@ -4612,14 +4402,16 @@ slots: slot_uri: MIXS:0000142 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bac_prod: annotations: - Preferred_unit: milligram per cubic meter per day + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day description: Bacterial production in the water column measured by isotope uptake title: bacterial production examples: @@ -4629,14 +4421,17 @@ slots: slot_uri: MIXS:0000683 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bac_resp: annotations: - Preferred_unit: milligram per cubic meter per day, micromole oxygen per liter per hour + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day, micromole oxygen per liter per + hour description: Measurement of bacterial respiration in the water column title: bacterial respiration examples: @@ -4644,7 +4439,7 @@ slots: slot_uri: MIXS:0000684 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4660,15 +4455,17 @@ slots: slot_uri: MIXS:0000173 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bacterial_density: annotations: - Preferred_unit: colony forming units per milliliter; colony forming units per gram - of dry weight + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043) title: bacteria density examples: @@ -4678,14 +4475,16 @@ slots: slot_uri: MIXS:0001194 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true barometric_press: annotations: - Preferred_unit: millibar + Preferred_unit: + tag: Preferred_unit + value: millibar description: Force per unit area exerted against a surface by the weight of air above that surface title: barometric pressure @@ -4696,7 +4495,7 @@ slots: slot_uri: MIXS:0000096 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4729,14 +4528,16 @@ slots: range: integer benzene: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of benzene in the sample title: benzene slot_uri: MIXS:0000153 range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4758,7 +4559,9 @@ slots: range: BinParamEnum bin_software: annotations: - Expected_value: names and versions of software(s) used + Expected_value: + tag: Expected_value + value: names and versions of software(s) used description: Tool(s) used for the extraction of genomes from metagenomic datasets, where possible include a product ID (PID) of the tool(s) used title: binning software @@ -4772,24 +4575,28 @@ slots: slot_uri: MIXS:0000078 biochem_oxygen_dem: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Amount of dissolved oxygen needed by aerobic biological organisms - in a body of water to break down organic material present in a given water sample - at certain temperature over a specific time period + in a body of water to break down organic material present in a given water + sample at certain temperature over a specific time period title: biochemical oxygen demand keywords: - oxygen slot_uri: MIXS:0000653 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true biocide: annotations: - Expected_value: name;name;timestamp + Expected_value: + tag: Expected_value + value: name;name;timestamp description: List of biocides (commercial name of product and supplier) and date of administration title: biocide administration @@ -4802,11 +4609,15 @@ slots: recommended: true biocide_admin_method: annotations: - Expected_value: measurement value;frequency;duration;duration - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: measurement value;frequency;duration;duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Method of biocide administration (dose, frequency, duration, time - elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 - days) + elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; + 3 days) title: biocide administration method keywords: - administration @@ -4816,19 +4627,21 @@ slots: recommended: true biocide_used: annotations: - Expected_value: commercial name of biocide, active ingredient in biocide or class of - biocide + Expected_value: + tag: Expected_value + value: commercial name of biocide, active ingredient in biocide or class + of biocide description: Substance intended for preventing, neutralizing, destroying, repelling, or mitigating the effects of any pest or microorganism; that inhibits the growth, - reproduction, and activity of organisms, including fungal cells; decreases the - number of fungi or pests present; deters microbial growth and degradation of - other ingredients in the formulation. Indicate the biocide used on the location + reproduction, and activity of organisms, including fungal cells; decreases + the number of fungi or pests present; deters microbial growth and degradation + of other ingredients in the formulation. Indicate the biocide used on the location where the sample was taken. Multiple terms can be separated by pipes title: biocide examples: - value: Quaternary ammonium compound|SterBac - range: string slot_uri: MIXS:0001258 + range: string multivalued: true biol_stat: description: The level of genome modification @@ -4837,12 +4650,16 @@ slots: - value: natural keywords: - status - range: BiolStatEnum slot_uri: MIXS:0000858 + range: BiolStatEnum biomass: annotations: - Expected_value: biomass type;measurement value - Preferred_unit: ton, kilogram, gram + Expected_value: + tag: Expected_value + value: biomass type;measurement value + Preferred_unit: + tag: Preferred_unit + value: ton, kilogram, gram description: Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements title: biomass @@ -4854,21 +4671,21 @@ slots: slot_uri: MIXS:0000174 multivalued: true biotic_regm: - description: Information about treatment(s) involving use of biotic factors, such - as bacteria, viruses or fungi + description: Information about treatment(s) involving use of biotic factors, + such as bacteria, viruses or fungi title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture keywords: - regimen slot_uri: MIXS:0001038 - multivalued: true range: string + multivalued: true biotic_relationship: - description: Description of relationship(s) between the subject organism and other - organism(s) it is associated with. E.g., parasite on species X; mutualist with - species Y. The target organism is the subject of the relationship, and the other - organism(s) is the object + description: Description of relationship(s) between the subject organism and + other organism(s) it is associated with. E.g., parasite on species X; mutualist + with species Y. The target organism is the subject of the relationship, and + the other organism(s) is the object title: observed biotic relationship examples: - value: free living @@ -4881,14 +4698,18 @@ slots: range: BioticRelationshipEnum birth_control: annotations: - Expected_value: medication name + Expected_value: + tag: Expected_value + value: medication name description: Specification of birth control medication used title: birth control - range: string slot_uri: MIXS:0000286 + range: string bishomohopanol: annotations: - Preferred_unit: microgram per liter, microgram per gram + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, microgram per gram description: Concentration of bishomohopanol title: bishomohopanol examples: @@ -4896,7 +4717,7 @@ slots: slot_uri: MIXS:0000175 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4909,11 +4730,13 @@ slots: keywords: - disorder slot_uri: MIXS:0000271 - multivalued: true range: string + multivalued: true blood_press_diast: annotations: - Preferred_unit: millimeter mercury + Preferred_unit: + tag: Preferred_unit + value: millimeter mercury description: Resting diastolic blood pressure, measured as mm mercury title: host blood pressure diastolic keywords: @@ -4923,14 +4746,16 @@ slots: slot_uri: MIXS:0000258 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true blood_press_syst: annotations: - Preferred_unit: millimeter mercury + Preferred_unit: + tag: Preferred_unit + value: millimeter mercury description: Resting systolic blood pressure, measured as mm mercury title: host blood pressure systolic keywords: @@ -4940,14 +4765,16 @@ slots: slot_uri: MIXS:0000259 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bromide: annotations: - Preferred_unit: parts per million + Preferred_unit: + tag: Preferred_unit + value: parts per million description: Concentration of bromide title: bromide examples: @@ -4955,7 +4782,7 @@ slots: slot_uri: MIXS:0000176 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -4970,17 +4797,17 @@ slots: slot_uri: MIXS:0000787 range: BuildDocsEnum build_occup_type: - description: The primary function for which a building or discrete part of a building - is intended to be used + description: The primary function for which a building or discrete part of a + building is intended to be used title: building occupancy type examples: - value: market keywords: - type slot_uri: MIXS:0000761 - multivalued: true range: BuildOccupTypeEnum required: true + multivalued: true building_setting: description: A location (geography) where a building is set title: building setting @@ -4991,7 +4818,9 @@ slots: required: true built_struc_age: annotations: - Preferred_unit: year + Preferred_unit: + tag: Preferred_unit + value: year description: The age of the built structure since construction title: built structure age examples: @@ -5001,7 +4830,7 @@ slots: slot_uri: MIXS:0000145 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5024,7 +4853,9 @@ slots: range: string calcium: annotations: - Preferred_unit: milligram per liter, micromole per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, micromole per liter, parts per million description: Concentration of calcium in the sample title: calcium examples: @@ -5032,14 +4863,16 @@ slots: slot_uri: MIXS:0000432 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true carb_dioxide: annotations: - Preferred_unit: micromole per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per million description: Carbon dioxide (gas) amount or concentration at the time of sampling title: carbon dioxide examples: @@ -5049,14 +4882,16 @@ slots: slot_uri: MIXS:0000097 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true carb_monoxide: annotations: - Preferred_unit: micromole per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per million description: Carbon monoxide (gas) amount or concentration at the time of sampling title: carbon monoxide examples: @@ -5066,14 +4901,16 @@ slots: slot_uri: MIXS:0000098 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true carb_nitro_ratio: annotations: - Expected_value: measurement value + Expected_value: + tag: Expected_value + value: measurement value description: Ratio of amount or concentrations of carbon to nitrogen title: carbon/nitrogen ratio examples: @@ -5087,7 +4924,9 @@ slots: range: float ceil_area: annotations: - Preferred_unit: square meter + Preferred_unit: + tag: Preferred_unit + value: square meter description: The area of the ceiling space within the room title: ceiling area examples: @@ -5098,7 +4937,7 @@ slots: slot_uri: MIXS:0000148 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5145,7 +4984,9 @@ slots: range: CeilingWallTextureEnum ceil_thermal_mass: annotations: - Preferred_unit: joule per degree Celsius + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius description: The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room @@ -5157,7 +4998,7 @@ slots: slot_uri: MIXS:0000143 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5183,7 +5024,9 @@ slots: range: MoldVisibilityEnum chem_administration: annotations: - Expected_value: CHEBI;timestamp + Expected_value: + tag: Expected_value + value: CHEBI;timestamp description: List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology @@ -5198,12 +5041,16 @@ slots: multivalued: true chem_mutagen: annotations: - Expected_value: mutagen name;mutagen amount;treatment interval and duration - Preferred_unit: milligram per liter - description: Treatment involving use of mutagens; should include the name of mutagen, - amount administered, treatment regimen including how many times the treatment - was repeated, how long each treatment lasted, and the start and end time of - the entire treatment; can include multiple mutagen regimens + Expected_value: + tag: Expected_value + value: mutagen name;mutagen amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Treatment involving use of mutagens; should include the name of + mutagen, amount administered, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple mutagen regimens title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -5212,25 +5059,31 @@ slots: multivalued: true chem_oxygen_dem: annotations: - Preferred_unit: milligram per liter - description: A measure of the capacity of water to consume oxygen during the decomposition - of organic matter and the oxidation of inorganic chemicals such as ammonia and - nitrite + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: A measure of the capacity of water to consume oxygen during the + decomposition of organic matter and the oxidation of inorganic chemicals such + as ammonia and nitrite title: chemical oxygen demand keywords: - oxygen slot_uri: MIXS:0000656 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true chem_treat_method: annotations: - Expected_value: measurement value;frequency;duration;duration - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: measurement value;frequency;duration;duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days) @@ -5242,11 +5095,13 @@ slots: slot_uri: MIXS:0000457 chem_treatment: annotations: - Expected_value: name;name;timestamp + Expected_value: + tag: Expected_value + value: name;name;timestamp description: List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, - demulsifiers, and other production chemicals etc.). The commercial name of the - product and name of the supplier should be provided. The date of administration + demulsifiers, and other production chemicals etc.). The commercial name of + the product and name of the supplier should be provided. The date of administration should also be included title: chemical treatment examples: @@ -5256,9 +5111,9 @@ slots: string_serialization: '{text};{text};{timestamp}' slot_uri: MIXS:0001012 chimera_check: - description: Tool(s) used for chimera checking, including version number and parameters, - to discover and remove chimeric sequences. A chimeric sequence is comprised - of two or more phylogenetically distinct parent sequences + description: Tool(s) used for chimera checking, including version number and + parameters, to discover and remove chimeric sequences. A chimeric sequence + is comprised of two or more phylogenetically distinct parent sequences title: chimera check software examples: - value: uchime;v4.1;default parameters @@ -5275,7 +5130,9 @@ slots: partial_match: true chloride: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of chloride in the sample title: chloride examples: @@ -5283,14 +5140,16 @@ slots: slot_uri: MIXS:0000429 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true chlorophyll: annotations: - Preferred_unit: milligram per cubic meter, microgram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter, microgram per liter description: Concentration of chlorophyll title: chlorophyll examples: @@ -5298,27 +5157,29 @@ slots: slot_uri: MIXS:0000177 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true climate_environment: description: Treatment involving an exposure to a particular climate; treatment - regimen including how many times the treatment was repeated, how long each treatment - lasted, and the start and end time of the entire treatment; can include multiple - climates + regimen including how many times the treatment was repeated, how long each + treatment lasted, and the start and end time of the entire treatment; can include + multiple climates title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - environment slot_uri: MIXS:0001040 - multivalued: true range: string + multivalued: true coll_site_geo_feat: annotations: - Expected_value: ENVO:00000002 or ENVO:00000070 + Expected_value: + tag: Expected_value + value: ENVO:00000002 or ENVO:00000070 description: 'Text or terms that describe the geographic feature where the food sample was obtained by the researcher. This field accepts selected terms listed under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002), @@ -5352,7 +5213,9 @@ slots: required: true compl_appr: annotations: - Expected_value: text + Expected_value: + tag: Expected_value + value: text description: The approach used to determine the completeness of a given genomic assembly, which would typically make use of a set of conserved marker genes or a closely related reference genome. For UViG completeness, include reference @@ -5360,15 +5223,17 @@ slots: title: completeness approach examples: - value: other - description: was other UViG length compared to the average length of - reference genomes from the P22virus genus (NCBI RefSeq v83) + description: was other UViG length compared to the average length + of reference genomes from the P22virus genus (NCBI RefSeq v83) in_subset: - sequencing slot_uri: MIXS:0000071 range: ComplApprEnum compl_score: annotations: - Expected_value: quality;percent completeness + Expected_value: + tag: Expected_value + value: quality;percent completeness description: 'Completeness score is typically based on either the fraction of markers found as compared to a database or the percent of a genome found as compared to a closely related reference genome. High Quality Draft: >90%, Medium @@ -5385,7 +5250,9 @@ slots: slot_uri: MIXS:0000069 compl_software: annotations: - Expected_value: names and versions of software(s) used + Expected_value: + tag: Expected_value + value: names and versions of software(s) used description: Tools used for completion estimate, i.e. checkm, anvi'o, busco title: completeness software examples: @@ -5398,7 +5265,9 @@ slots: slot_uri: MIXS:0000070 conduc: annotations: - Preferred_unit: milliSiemens per centimeter + Preferred_unit: + tag: Preferred_unit + value: milliSiemens per centimeter description: Electrical conductivity of water title: conductivity examples: @@ -5406,14 +5275,16 @@ slots: slot_uri: MIXS:0000692 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true cons_food_stor_dur: annotations: - Preferred_unit: hours or days + Preferred_unit: + tag: Preferred_unit + value: hours or days description: The storage duration of the food commodity by the consumer, prior to onset of illness or sample collection. Indicate the timepoint written in ISO 8601 format @@ -5434,10 +5305,14 @@ slots: partial_match: true cons_food_stor_temp: annotations: - Expected_value: text or measurement value - Preferred_unit: degree Celsius - description: Temperature at which food commodity was stored by the consumer, prior - to onset of illness or sample collection + Expected_value: + tag: Expected_value + value: text or measurement value + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which food commodity was stored by the consumer, + prior to onset of illness or sample collection title: food stored by consumer (storage temperature) examples: - value: 4 degree Celsius @@ -5466,7 +5341,7 @@ slots: - quantity slot_uri: MIXS:0001198 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -5474,9 +5349,9 @@ slots: contam_score: description: 'The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores - are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low - Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be - deposited into any of the public databases' + are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, + Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to + be deposited into any of the public databases' title: contamination score examples: - value: '0.01' @@ -5497,7 +5372,9 @@ slots: range: ContamScreenInputEnum contam_screen_param: annotations: - Expected_value: enumeration;value or name + Expected_value: + tag: Expected_value + value: enumeration;value or name description: Specific parameters used in the decontamination sofware, such as reference database, coverage, and kmers. Combinations of these parameters may also be used, i.e. kmer and coverage, or reference database and kmer @@ -5521,7 +5398,9 @@ slots: range: integer crop_rotation: annotations: - Expected_value: crop rotation status;schedule + Expected_value: + tag: Expected_value + value: crop rotation status;schedule description: Whether or not crop is rotated, and if yes, rotation schedule title: history/crop rotation examples: @@ -5531,7 +5410,9 @@ slots: slot_uri: MIXS:0000318 crop_yield: annotations: - Preferred_unit: kilogram per metre square + Preferred_unit: + tag: Preferred_unit + value: kilogram per metre square description: Amount of crop produced per unit or area of land title: crop yield examples: @@ -5541,7 +5422,7 @@ slots: slot_uri: MIXS:0001116 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5578,8 +5459,8 @@ slots: - culture - organism slot_uri: MIXS:0001118 - multivalued: true range: string + multivalued: true pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ structured_pattern: syntax: ^({termLabel} \[{termID}\])|{integer}$ @@ -5587,7 +5468,9 @@ slots: partial_match: true cult_root_med: annotations: - Expected_value: name, PMID,DOI or url + Expected_value: + tag: Expected_value + value: name, PMID,DOI or url description: Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally @@ -5601,7 +5484,9 @@ slots: slot_uri: MIXS:0001041 cult_target: annotations: - Expected_value: NCIT:C14250 or NCBI taxid or culture independent + Expected_value: + tag: Expected_value + value: NCIT:C14250 or NCBI taxid or culture independent description: The target microbial analyte in terms of investigation scope. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy @@ -5617,7 +5502,9 @@ slots: multivalued: true cur_land_use: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Present state of sample site title: current land use examples: @@ -5626,29 +5513,31 @@ slots: - land - use string_serialization: '[cities|farmstead|industrial areas|roads/railroads|rock|sand|gravel|mudflats|salt - flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste areas|small - grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands + flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste + areas|small grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands (grass,sedges,rushes)|tundra (mosses,lichens)|rangeland|pastureland (grasslands used for livestock grazing)|hayland|meadows (grasses,alfalfa,fescue,bromegrass,timothy)|shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)|successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)|shrub crops (blueberries,nursery ornamentals,filberts)|vine crops (grapes)|conifers (e.g. pine,spruce,fir,cypress)|hardwoods (e.g. oak,hickory,elm,aspen)|intermixed - hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen forest - receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent water - body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery + hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen + forest receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent + water body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery trees)]' slot_uri: MIXS:0001080 cur_vegetation: annotations: - Expected_value: current vegetation type + Expected_value: + tag: Expected_value + value: current vegetation type description: Vegetation classification from one or more standard classification systems, or agricultural crop title: current vegetation keywords: - vegetation - range: string slot_uri: MIXS:0000312 + range: string cur_vegetation_meth: description: Reference or method used in vegetation classification title: current vegetation method @@ -5663,8 +5552,9 @@ slots: interpolated: true partial_match: true date_extr_weath: - description: Date of unusual weather events that may have affected microbial populations. - Multiple terms can be separated by pipes, listed in reverse chronological order + description: Date of unusual weather events that may have affected microbial + populations. Multiple terms can be separated by pipes, listed in reverse chronological + order title: extreme weather date examples: - value: '2013-03-25T12:42:31+01:00' @@ -5673,8 +5563,8 @@ slots: - extreme - weather slot_uri: MIXS:0001142 - multivalued: true range: datetime + multivalued: true date_last_rain: description: The date of the last time it rained title: date last rain @@ -5687,7 +5577,9 @@ slots: range: datetime decontam_software: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Tool(s) used in contamination screening title: decontamination software examples: @@ -5700,7 +5592,9 @@ slots: slot_uri: MIXS:0000074 density: annotations: - Preferred_unit: gram per cubic meter, gram per cubic centimeter + Preferred_unit: + tag: Preferred_unit + value: gram per cubic meter, gram per cubic centimeter description: Density of the sample, which is its mass per unit volume (aka volumetric mass density) title: density @@ -5711,7 +5605,7 @@ slots: slot_uri: MIXS:0000435 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5727,10 +5621,12 @@ slots: recommended: true depth: annotations: - Preferred_unit: meter - description: The vertical distance below local surface. For sediment or soil samples - depth is measured from sediment or soil surface, respectively. Depth can be - reported as an interval for subsurface samples + Preferred_unit: + tag: Preferred_unit + value: meter + description: The vertical distance below local surface. For sediment or soil + samples depth is measured from sediment or soil surface, respectively. Depth + can be reported as an interval for subsurface samples title: depth in_subset: - environment @@ -5739,7 +5635,7 @@ slots: slot_uri: MIXS:0000018 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5752,11 +5648,13 @@ slots: keywords: - disorder slot_uri: MIXS:0000284 - multivalued: true range: string + multivalued: true detec_type: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Type of UViG detection title: detection type examples: @@ -5769,7 +5667,9 @@ slots: slot_uri: MIXS:0000084 dew_point: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water title: dew point @@ -5778,14 +5678,16 @@ slots: slot_uri: MIXS:0000129 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diet_last_six_month: annotations: - Expected_value: diet change;current diet + Expected_value: + tag: Expected_value + value: diet change;current diet description: Specification of major diet changes in the last six months, if yes the change should be specified title: major diet change in last six months @@ -5798,7 +5700,9 @@ slots: slot_uri: MIXS:0000266 dietary_claim_use: annotations: - Expected_value: FOODON:03510023 + Expected_value: + tag: Expected_value + value: FOODON:03510023 description: These descriptors are used either for foods intended for special dietary use as defined in 21 CFR 105 or for foods that have special characteristics indicated in the name or labeling. This field accepts terms listed under dietary @@ -5816,8 +5720,12 @@ slots: multivalued: true diether_lipids: annotations: - Expected_value: diether lipid name;measurement value - Preferred_unit: nanogram per liter + Expected_value: + tag: Expected_value + value: diether lipid name;measurement value + Preferred_unit: + tag: Preferred_unit + value: nanogram per liter description: Concentration of diether lipids; can include multiple types of diether lipids title: diether lipids @@ -5828,7 +5736,9 @@ slots: multivalued: true diss_carb_dioxide: annotations: - Preferred_unit: micromole per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter description: Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample title: dissolved carbon dioxide @@ -5840,14 +5750,16 @@ slots: slot_uri: MIXS:0000436 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_hydrogen: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Concentration of dissolved hydrogen title: dissolved hydrogen examples: @@ -5857,14 +5769,16 @@ slots: slot_uri: MIXS:0000179 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_inorg_carb: annotations: - Preferred_unit: microgram per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, milligram per liter, parts per million description: Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter title: dissolved inorganic carbon @@ -5877,14 +5791,16 @@ slots: slot_uri: MIXS:0000434 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_inorg_nitro: annotations: - Preferred_unit: microgram per liter, micromole per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter description: Concentration of dissolved inorganic nitrogen title: dissolved inorganic nitrogen examples: @@ -5896,7 +5812,7 @@ slots: slot_uri: MIXS:0000698 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5913,14 +5829,16 @@ slots: slot_uri: MIXS:0000106 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_iron: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Concentration of dissolved iron in the sample title: dissolved iron keywords: @@ -5929,16 +5847,18 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_org_carb: annotations: - Preferred_unit: micromole per liter, milligram per liter - description: Concentration of dissolved organic carbon in the sample, liquid portion - of the sample, or aqueous phase of the fluid + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter + description: Concentration of dissolved organic carbon in the sample, liquid + portion of the sample, or aqueous phase of the fluid title: dissolved organic carbon examples: - value: 197 micromole per liter @@ -5949,7 +5869,7 @@ slots: slot_uri: MIXS:0000433 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -5967,14 +5887,16 @@ slots: slot_uri: MIXS:0000162 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_oxygen: annotations: - Preferred_unit: micromole per kilogram, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per kilogram, milligram per liter description: Concentration of dissolved oxygen title: dissolved oxygen examples: @@ -5985,14 +5907,16 @@ slots: slot_uri: MIXS:0000119 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_oxygen_fluid: annotations: - Preferred_unit: micromole per kilogram, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per kilogram, milligram per liter description: Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic) title: dissolved oxygen in fluids @@ -6002,7 +5926,7 @@ slots: slot_uri: MIXS:0000438 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6075,7 +5999,9 @@ slots: range: DoorMoveEnum door_size: annotations: - Preferred_unit: square meter + Preferred_unit: + tag: Preferred_unit + value: square meter description: The size of the door title: door area or size examples: @@ -6087,7 +6013,7 @@ slots: slot_uri: MIXS:0000158 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6114,7 +6040,9 @@ slots: range: DoorTypeMetalEnum door_type_wood: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: The type of wood door title: door type, wood examples: @@ -6123,8 +6051,8 @@ slots: - door - type string_serialization: '[bettened and ledged|battened|ledged and braced|battened|ledged - and framed|battened|ledged, braced and frame|framed and paneled|glashed or sash|flush|louvered|wire - gauged]' + and framed|battened|ledged, braced and frame|framed and paneled|glashed or + sash|flush|louvered|wire gauged]' slot_uri: MIXS:0000797 door_water_mold: description: Signs of the presence of mold or mildew on a door @@ -6144,8 +6072,10 @@ slots: range: datetime down_par: annotations: - Preferred_unit: microEinstein per square meter per second, microEinstein per square - centimeter per second + Preferred_unit: + tag: Preferred_unit + value: microEinstein per square meter per second, microEinstein per square + centimeter per second description: Visible waveband radiance and irradiance measurements in the water column title: downward PAR @@ -6154,13 +6084,14 @@ slots: slot_uri: MIXS:0000703 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true drainage_class: - description: Drainage classification from a standard system such as the USDA system + description: Drainage classification from a standard system such as the USDA + system title: drainage classification examples: - value: well @@ -6180,7 +6111,9 @@ slots: range: DrawingsEnum drug_usage: annotations: - Expected_value: drug name;frequency + Expected_value: + tag: Expected_value + value: drug name;frequency description: Any drug used by subject and the frequency of usage; can include multiple drugs used title: drug usage @@ -6194,7 +6127,9 @@ slots: multivalued: true efficiency_percent: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Percentage of volatile solids removed from the anaerobic digestor title: efficiency percent keywords: @@ -6202,14 +6137,16 @@ slots: slot_uri: MIXS:0000657 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true elev: annotations: - Preferred_unit: meter + Preferred_unit: + tag: Preferred_unit + value: meter description: Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the @@ -6224,7 +6161,7 @@ slots: slot_uri: MIXS:0000093 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6240,8 +6177,12 @@ slots: range: integer emulsions: annotations: - Expected_value: emulsion name;measurement value - Preferred_unit: gram per liter + Expected_value: + tag: Expected_value + value: emulsion name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram per liter description: Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types @@ -6251,7 +6192,9 @@ slots: multivalued: true encoded_traits: annotations: - Expected_value: 'for plasmid: antibiotic resistance; for phage: converting genes' + Expected_value: + tag: Expected_value + value: 'for plasmid: antibiotic resistance; for phage: converting genes' description: Should include key traits like antibiotic resistance or xenobiotic degradation phenotypes for plasmids, converting genes for phage title: encoded traits @@ -6259,12 +6202,12 @@ slots: - value: beta-lactamase class A in_subset: - nucleic acid sequence source - range: string slot_uri: MIXS:0000034 + range: string enrichment_protocol: description: The microbiological workflow or protocol followed to test for the - presence or enumeration of the target microbial analyte(s). Please provide a - PubMed or DOI reference for published protocols + presence or enumeration of the target microbial analyte(s). Please provide + a PubMed or DOI reference for published protocols title: enrichment protocol examples: - value: 'BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria' @@ -6273,7 +6216,7 @@ slots: - protocol slot_uri: MIXS:0001177 range: string - pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ structured_pattern: syntax: ^{PMID}|{DOI}|{URL}|{text}$ interpolated: true @@ -6302,8 +6245,10 @@ slots: partial_match: true env_local_scale: annotations: - Expected_value: Environmental entities having causal influences upon the entity at - time of sampling + Expected_value: + tag: Expected_value + value: Environmental entities having causal influences upon the entity at + time of sampling description: 'Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller @@ -6319,17 +6264,18 @@ slots: keywords: - context - environmental + slot_uri: MIXS:0000013 + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true - slot_uri: MIXS:0000013 - required: true env_medium: description: 'Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of - ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO - documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS + ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). + EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)' @@ -6350,14 +6296,16 @@ slots: partial_match: true env_monitoring_zone: annotations: - Expected_value: ENVO + Expected_value: + tag: Expected_value + value: ENVO description: An environmental monitoring zone is a formal designation as part of an environmental monitoring program, in which areas of a food production facility are categorized, commonly as zones 1-4, based on likelihood or risk - of foodborne pathogen contamination. This field accepts terms listed under food - production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO). - Please add a term to indicate the environmental monitoring zone the sample was - taken from + of foodborne pathogen contamination. This field accepts terms listed under + food production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO). + Please add a term to indicate the environmental monitoring zone the sample + was taken from title: food production environmental monitoring zone examples: - value: Zone 1 @@ -6365,8 +6313,8 @@ slots: - environmental - food - production - range: string slot_uri: MIXS:0001254 + range: string escalator: description: The number of escalators within the built structure title: escalator count @@ -6378,7 +6326,9 @@ slots: range: integer estimated_size: annotations: - Expected_value: number of base pairs + Expected_value: + tag: Expected_value + value: number of base pairs description: The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period @@ -6393,39 +6343,45 @@ slots: slot_uri: MIXS:0000024 ethnicity: annotations: - Expected_value: text recommend from Wikipedia list + Expected_value: + tag: Expected_value + value: text recommend from Wikipedia list description: A category of people who identify with each other, usually on the basis of presumed similarities such as a common language, ancestry, history, society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups title: ethnicity examples: - value: native american - range: string slot_uri: MIXS:0000895 + range: string multivalued: true ethylbenzene: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of ethylbenzene in the sample title: ethylbenzene slot_uri: MIXS:0000155 range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true exp_duct: annotations: - Preferred_unit: square meter + Preferred_unit: + tag: Preferred_unit + value: square meter description: The amount of exposed ductwork in the room title: exposed ductwork slot_uri: MIXS:0000144 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6437,14 +6393,16 @@ slots: - pipes slot_uri: MIXS:0000220 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true experimental_factor: annotations: - Expected_value: text or EFO and/or OBI + Expected_value: + tag: Expected_value + value: text or EFO and/or OBI description: Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or @@ -6459,8 +6417,8 @@ slots: - factor string_serialization: '{termLabel} [{termID}]|{text}' slot_uri: MIXS:0000008 - multivalued: true range: string + multivalued: true pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$ ext_door: description: The number of exterior doors in the built structure @@ -6502,8 +6460,8 @@ slots: - extreme - weather slot_uri: MIXS:0001141 - multivalued: true range: ExtrWeatherEventEnum + multivalued: true extrachrom_elements: description: Do plasmids exist of significant phenotypic consequence (e.g. ones that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids @@ -6533,10 +6491,12 @@ slots: - facility - type slot_uri: MIXS:0001252 - multivalued: true range: FacilityTypeEnum + multivalued: true fao_class: - description: Soil classification from the FAO World soil distribution from International Soil Reference and Information Centre (ISRIC). The list of available soil classifications can be found at https://www.isric.org/explore/world-soil-distribution + description: Soil classification from the FAO World soil distribution from International + Soil Reference and Information Centre (ISRIC). The list of available soil classifications + can be found at https://www.isric.org/explore/world-soil-distribution title: soil_taxonomic/FAO classification examples: - value: Luvisols @@ -6545,10 +6505,11 @@ slots: slot_uri: MIXS:0001083 range: FaoClassEnum farm_equip: - description: List of equipment used for planting, fertilization, harvesting, irrigation, - land levelling, residue management, weeding or transplanting during the growing - season. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). - Multiple terms can be separated by pipes + description: List of equipment used for planting, fertilization, harvesting, + irrigation, land levelling, residue management, weeding or transplanting during + the growing season. This field accepts terms listed under agricultural implement + (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated + by pipes title: farm equipment used examples: - value: combine harvester [AGRO:00000473] @@ -6557,8 +6518,8 @@ slots: - farm - use slot_uri: MIXS:0001126 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -6566,9 +6527,13 @@ slots: partial_match: true farm_equip_san: annotations: - Expected_value: text or commercial name of sanitizer or class of sanitizer or active - ingredient in sanitizer - Preferred_unit: parts per million + Expected_value: + tag: Expected_value + value: text or commercial name of sanitizer or class of sanitizer or active + ingredient in sanitizer + Preferred_unit: + tag: Preferred_unit + value: parts per million description: Method used to sanitize growing and harvesting equipment. This can including type and concentration of sanitizing solution. Multiple terms can be separated by one or more pipes @@ -6604,8 +6569,8 @@ slots: - equipment - farm slot_uri: MIXS:0001123 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -6626,8 +6591,8 @@ slots: range: FarmWaterSourceEnum recommended: true feat_pred: - description: Method used to predict UViGs features such as ORFs, integration site, - etc + description: Method used to predict UViGs features such as ORFs, integration + site, etc title: feature prediction examples: - value: Prodigal;2.6.3;default parameters @@ -6645,7 +6610,9 @@ slots: partial_match: true ferm_chem_add: annotations: - Expected_value: chemical ingredient + Expected_value: + tag: Expected_value + value: chemical ingredient description: Any chemicals that are added to the fermentation process to achieve the desired final product title: fermentation chemical additives @@ -6655,11 +6622,13 @@ slots: - fermentation string_serialization: '{float} {unit}' slot_uri: MIXS:0001185 - multivalued: true recommended: true + multivalued: true ferm_chem_add_perc: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: The amount of chemical added to the fermentation process title: fermentation chemical additives percentage examples: @@ -6668,12 +6637,14 @@ slots: - fermentation - percent slot_uri: MIXS:0001186 - multivalued: true range: float recommended: true + multivalued: true ferm_headspace_oxy: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: The amount of headspace oxygen in a fermentation vessel title: fermentation headspace oxygen examples: @@ -6686,8 +6657,8 @@ slots: recommended: true ferm_medium: description: The growth medium used for the fermented food fermentation process, - which supplies the required nutrients. Usually this includes a carbon and nitrogen - source, water, micronutrients and chemical additives + which supplies the required nutrients. Usually this includes a carbon and + nitrogen source, water, micronutrients and chemical additives title: fermentation medium examples: - value: molasses @@ -6709,7 +6680,9 @@ slots: recommended: true ferm_rel_humidity: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: The relative humidity of the fermented food fermentation process title: fermentation relative humidity comments: @@ -6724,14 +6697,16 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ferm_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: The temperature of the fermented food fermentation process title: fermentation temperature examples: @@ -6743,14 +6718,16 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ferm_time: annotations: - Preferred_unit: days + Preferred_unit: + tag: Preferred_unit + value: days description: The time duration of the fermented food fermentation process title: fermentation time examples: @@ -6780,8 +6757,8 @@ slots: description: Type of fertilizer or amendment added to the soil or water for the purpose of improving substrate health and quality for plant growth. This field accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062). - Multiple terms may apply and can be separated by pipes, listing in reverse chronological - order + Multiple terms may apply and can be separated by pipes, listing in reverse + chronological order title: fertilizer administration examples: - value: fish emulsion [AGRO:00000082] @@ -6808,12 +6785,16 @@ slots: range: datetime fertilizer_regm: annotations: - Expected_value: fertilizer name;fertilizer amount;treatment interval and duration - Preferred_unit: gram, mole per liter, milligram per liter + Expected_value: + tag: Expected_value + value: fertilizer name;fertilizer amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including - how many times the treatment was repeated, how long each treatment lasted, and - the start and end time of the entire treatment; can include multiple fertilizer + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple fertilizer regimens title: fertilizer regimen examples: @@ -6830,7 +6811,8 @@ slots: range: string recommended: true filter_type: - description: A device which removes solid particulates or airborne molecular contaminants + description: A device which removes solid particulates or airborne molecular + contaminants title: filter type examples: - value: HEPA @@ -6838,9 +6820,9 @@ slots: - filter - type slot_uri: MIXS:0000765 - multivalued: true range: FilterTypeEnum required: true + multivalued: true fire: description: Historical and/or physical evidence of fire title: history/fire @@ -6866,7 +6848,9 @@ slots: range: datetime floor_age: annotations: - Preferred_unit: years, weeks, days + Preferred_unit: + tag: Preferred_unit + value: years, weeks, days description: The time period since installment of the carpet or flooring title: floor age keywords: @@ -6875,14 +6859,16 @@ slots: slot_uri: MIXS:0000164 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true floor_area: annotations: - Preferred_unit: square meter + Preferred_unit: + tag: Preferred_unit + value: square meter description: The area of the floor space within the room title: floor area keywords: @@ -6891,7 +6877,7 @@ slots: slot_uri: MIXS:0000165 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6918,7 +6904,9 @@ slots: range: integer floor_finish_mat: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: The floor covering type; the finished surface that is walked on title: floor finish material examples: @@ -6942,8 +6930,11 @@ slots: range: FloorStrucEnum floor_thermal_mass: annotations: - Preferred_unit: joule per degree Celsius - description: The ability of the floor to provide inertia against temperature fluctuations + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the floor to provide inertia against temperature + fluctuations title: floor thermal mass keywords: - floor @@ -6951,7 +6942,7 @@ slots: slot_uri: MIXS:0000166 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6967,7 +6958,9 @@ slots: range: FloorWaterMoldEnum fluor: annotations: - Preferred_unit: milligram chlorophyll a per cubic meter, volts + Preferred_unit: + tag: Preferred_unit + value: milligram chlorophyll a per cubic meter, volts description: Raw or converted fluorescence of water title: fluorescence examples: @@ -6975,7 +6968,7 @@ slots: slot_uri: MIXS:0000704 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -6989,13 +6982,15 @@ slots: range: string food_additive: annotations: - Expected_value: FOODON:03412972 + Expected_value: + tag: Expected_value + value: FOODON:03412972 description: A substance or substances added to food to maintain or improve safety - and freshness, to improve or maintain nutritional value, or improve taste, texture - and appearance. This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972). - Multiple terms can be separated by one or more pipes, but please consider limiting - this list to the top 5 ingredients listed in order as on the food label. See - also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors + and freshness, to improve or maintain nutritional value, or improve taste, + texture and appearance. This field accepts terms listed under food additive + (http://purl.obolibrary.org/obo/FOODON_03412972). Multiple terms can be separated + by one or more pipes, but please consider limiting this list to the top 5 ingredients + listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors title: food additive examples: - value: xanthan gum [FOODON:03413321] @@ -7006,7 +7001,9 @@ slots: multivalued: true food_allergen_label: annotations: - Expected_value: FOODON:03510213 + Expected_value: + tag: Expected_value + value: FOODON:03510213 description: A label indication that the product contains a recognized allergen. This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213) title: food allergen labeling @@ -7033,7 +7030,9 @@ slots: range: FoodCleanProcEnum food_contact_surf: annotations: - Expected_value: FOODON:03500010 + Expected_value: + tag: Expected_value + value: FOODON:03500010 description: The specific container or coating materials in direct contact with the food. Multiple values can be assigned. This field accepts terms listed under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010) @@ -7048,7 +7047,9 @@ slots: multivalued: true food_contain_wrap: annotations: - Expected_value: FOODON:03490100 + Expected_value: + tag: Expected_value + value: FOODON:03490100 description: Type of container or wrapping defined by the main container material, the container form, and the material of the liner lids or ends. Also type of container or wrapping by form; prefer description by material first, then by @@ -7062,9 +7063,11 @@ slots: slot_uri: MIXS:0001132 food_cooking_proc: annotations: - Expected_value: FOODON:03450002 - description: The transformation of raw food by the application of heat. This field - accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002) + Expected_value: + tag: Expected_value + value: FOODON:03450002 + description: The transformation of raw food by the application of heat. This + field accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002) title: food cooking process examples: - value: food blanching [FOODON:03470175] @@ -7089,16 +7092,18 @@ slots: - geographic - location slot_uri: MIXS:0001203 - multivalued: true range: string - pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$' + multivalued: true + pattern: '^.*: .*, .*$' structured_pattern: syntax: '^{text}: {text}, {text}$' interpolated: true partial_match: true food_dis_point_city: annotations: - Expected_value: GAZ:00000448 + Expected_value: + tag: Expected_value + value: GAZ:00000448 description: 'A reference to a place on the Earth, by its name or by its geographical location that refers to a distribution point along the food chain. This field accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). @@ -7127,11 +7132,13 @@ slots: - food - process slot_uri: MIXS:0001133 - multivalued: true range: string + multivalued: true food_ingredient: annotations: - Expected_value: FOODON + Expected_value: + tag: Expected_value + value: FOODON description: In this field, please list individual ingredients for multi-component food [FOODON:00002501] and simple foods that is not captured in food_type. Please use terms that are present in FoodOn. Multiple terms can be separated by one @@ -7147,8 +7154,8 @@ slots: slot_uri: MIXS:0001205 multivalued: true food_name_status: - description: A datum indicating that use of a food product name is regulated in - some legal jurisdiction. This field accepts terms listed under food product + description: A datum indicating that use of a food product name is regulated + in some legal jurisdiction. This field accepts terms listed under food product name legal status (http://purl.obolibrary.org/obo/FOODON_03530087) title: food product name legal status examples: @@ -7179,14 +7186,16 @@ slots: - product slot_uri: MIXS:0001207 range: string - pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$' + pattern: '^.*: .*, .*$' structured_pattern: syntax: '^{text}: {text}, {text}$' interpolated: true partial_match: true food_pack_capacity: annotations: - Preferred_unit: grams + Preferred_unit: + tag: Preferred_unit + value: grams description: The maximum number of product units within a package title: food package capacity examples: @@ -7197,14 +7206,16 @@ slots: slot_uri: MIXS:0001208 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true food_pack_integrity: annotations: - Expected_value: FOODON:03530218 + Expected_value: + tag: Expected_value + value: FOODON:03530218 description: A term label and term id to describe the state of the packing material and text to explain the exact condition. This field accepts terms listed under food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218) @@ -7218,15 +7229,17 @@ slots: multivalued: true food_pack_medium: annotations: - Expected_value: FOODON:03480020 + Expected_value: + tag: Expected_value + value: FOODON:03480020 description: The medium in which the food is packed for preservation and handling or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. The packing medium may provide a controlled environment for the food. It may also serve to improve palatability and consumer appeal. This includes edible packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide), - vacuum packed, or packed with aerosol propellant. This field accepts terms under - food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple - terms may apply and can be separated by pipes + vacuum packed, or packed with aerosol propellant. This field accepts terms + under food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). + Multiple terms may apply and can be separated by pipes title: food packing medium keywords: - food @@ -7235,7 +7248,9 @@ slots: multivalued: true food_preserv_proc: annotations: - Expected_value: FOODON:03470107 + Expected_value: + tag: Expected_value + value: FOODON:03470107 description: The methods contributing to the prevention or retardation of microbial, enzymatic or oxidative spoilage and thus to the extension of shelf life. This field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107) @@ -7250,12 +7265,14 @@ slots: multivalued: true food_prior_contact: annotations: - Expected_value: FOODON:03530077 + Expected_value: + tag: Expected_value + value: FOODON:03530077 description: The material the food contacted (e.g., was processed in) prior to - packaging. This field accepts terms listed under material of contact prior to - food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper - descriptor is not listed please use text to describe the material of contact - prior to food packaging + packaging. This field accepts terms listed under material of contact prior + to food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the + proper descriptor is not listed please use text to describe the material of + contact prior to food packaging title: material of contact prior to food packaging examples: - value: processed in stainless steel container [FOODON:03530081] @@ -7269,9 +7286,10 @@ slots: food_prod: description: Descriptors of the food production system or of the agricultural environment and growing conditions related to the farm production system, such - as wild caught, organic, free-range, industrial, dairy, beef, domestic or cultivated - food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206). - Multiple terms may apply and can be separated by pipes + as wild caught, organic, free-range, industrial, dairy, beef, domestic or + cultivated food production. This field accepts terms listed under food production + (http://purl.obolibrary.org/obo/FOODON_03530206). Multiple terms may apply + and can be separated by pipes title: food production system characteristics examples: - value: organic plant cultivation [FOODON:03530253] @@ -7279,8 +7297,8 @@ slots: - food - production slot_uri: MIXS:0001211 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -7296,8 +7314,8 @@ slots: - food - production slot_uri: MIXS:0001136 - multivalued: true range: string + multivalued: true food_prod_synonym: description: Other names by which the food product is known by (e.g., regional or non-English names) @@ -7308,14 +7326,14 @@ slots: - food - product slot_uri: MIXS:0001212 - multivalued: true range: string + multivalued: true food_product_qual: description: Descriptors for describing food visually or via other senses, which is useful for tasks like food inspection where little prior knowledge of how - the food came to be is available. Some terms like "food (frozen)" are both a - quality descriptor and the output of a process. This field accepts terms listed - under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454) + the food came to be is available. Some terms like "food (frozen)" are both + a quality descriptor and the output of a process. This field accepts terms + listed under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454) title: food product by quality examples: - value: raw [FOODON:03311126] @@ -7332,13 +7350,15 @@ slots: partial_match: true food_product_type: annotations: - Expected_value: FOODON:00001002 or FOODON:03309997 + Expected_value: + tag: Expected_value + value: FOODON:00001002 or FOODON:03309997 description: A food product type is a class of food products that is differentiated by its food composition (e.g., single- or multi-ingredient), processing and/or - consumption characteristics. This does not include brand name products but it - may include generic food dish categories. This field accepts terms under food - product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related - to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). + consumption characteristics. This does not include brand name products but + it may include generic food dish categories. This field accepts terms under + food product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms + related to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes title: food product type @@ -7350,11 +7370,13 @@ slots: slot_uri: MIXS:0001184 food_quality_date: annotations: - Expected_value: enumeration, date + Expected_value: + tag: Expected_value + value: enumeration, date description: The date recommended for the use of the product while at peak quality, - this date is not a reflection of safety unless used on infant formula this date - is not a reflection of safety and is typically labeled on a food product as - "best if used by," best by," "use by," or "freeze by." + this date is not a reflection of safety unless used on infant formula this + date is not a reflection of safety and is typically labeled on a food product + as "best if used by," best by," "use by," or "freeze by." title: food quality date examples: - value: best by 2020-05-24 @@ -7366,7 +7388,9 @@ slots: slot_uri: MIXS:0001178 food_source: annotations: - Expected_value: FOODON term + Expected_value: + tag: Expected_value + value: FOODON term description: Type of plant or animal from which the food product or its major ingredient is derived or a chemical food source [FDA CFSAN 1995] title: food source @@ -7377,7 +7401,9 @@ slots: slot_uri: MIXS:0001139 food_source_age: annotations: - Preferred_unit: days + Preferred_unit: + tag: Preferred_unit + value: days description: The age of the food source host organim. Depending on the type of host organism, age may be more appropriate to report in days, weeks, or years title: food source age @@ -7392,19 +7418,19 @@ slots: slot_uri: MIXS:0001251 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true food_trace_list: description: The FDA is proposing to establish additional traceability recordkeeping - requirements (beyond what is already required in existing regulations) for persons - who manufacture, process, pack, or hold foods the Agency has designated for - inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies - the foods for which the additional traceability records described in the proposed - rule would be required. The term Food Traceability List (FTL) refers not only - to the foods specifically listed (https://www.fda.gov/media/142303/download), + requirements (beyond what is already required in existing regulations) for + persons who manufacture, process, pack, or hold foods the Agency has designated + for inclusion on the Food Traceability List. The Food Traceability List (FTL) + identifies the foods for which the additional traceability records described + in the proposed rule would be required. The term Food Traceability List (FTL) + refers not only to the foods specifically listed (https://www.fda.gov/media/142303/download), but also to any foods that contain listed foods as ingredients title: food traceability list category examples: @@ -7414,11 +7440,11 @@ slots: slot_uri: MIXS:0001214 range: FoodTraceListEnum food_trav_mode: - description: A descriptor for the method of movement of food commodity along the - food distribution system. This field accepts terms listed under travel mode - (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is - not listed please use text to describe the mode of travel. Multiple terms can - be separated by one or more pipes + description: A descriptor for the method of movement of food commodity along + the food distribution system. This field accepts terms listed under travel + mode (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor + is not listed please use text to describe the mode of travel. Multiple terms + can be separated by one or more pipes title: food shipping transportation method examples: - value: train travel [GENEPIO:0001060] @@ -7427,8 +7453,8 @@ slots: - method - transport slot_uri: MIXS:0001137 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -7436,7 +7462,9 @@ slots: partial_match: true food_trav_vehic: annotations: - Expected_value: ENVO:01000604 + Expected_value: + tag: Expected_value + value: ENVO:01000604 description: A descriptor for the mobile machine which is used to transport food commodities along the food distribution system. This field accepts terms listed under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper @@ -7453,7 +7481,9 @@ slots: multivalued: true food_treat_proc: annotations: - Expected_value: FOODON:03460111 + Expected_value: + tag: Expected_value + value: FOODON:03460111 description: Used to specifically characterize a food product based on the treatment or processes applied to the product or any indexed ingredient. The processes include adding, substituting or removing components or modifying the food or @@ -7486,26 +7516,29 @@ slots: - frequency slot_uri: MIXS:0000227 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true fungicide_regm: annotations: - Preferred_unit: gram, mole per liter, milligram per liter - description: Information about treatment involving use of fungicides; should include - the name of fungicide, amount administered, treatment regimen including how - many times the treatment was repeated, how long each treatment lasted, and the - start and end time of the entire treatment; can include multiple fungicide regimens + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of fungicides; should + include the name of fungicide, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple fungicide + regimens title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen slot_uri: MIXS:0000557 - multivalued: true range: string + multivalued: true furniture: description: The types of furniture present in the sampled room title: furniture @@ -7515,7 +7548,9 @@ slots: range: FurnitureEnum gaseous_environment: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens @@ -7525,14 +7560,18 @@ slots: keywords: - environment slot_uri: MIXS:0000558 - multivalued: true range: string + multivalued: true gaseous_substances: annotations: - Expected_value: gaseous substance name;measurement value - Preferred_unit: micromole per liter - description: Amount or concentration of substances such as hydrogen sulfide, carbon - dioxide, methane, etc.; can include multiple substances + Expected_value: + tag: Expected_value + value: gaseous substance name;measurement value + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Amount or concentration of substances such as hydrogen sulfide, + carbon dioxide, methane, etc.; can include multiple substances title: gaseous substances string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000661 @@ -7546,8 +7585,8 @@ slots: keywords: - disorder slot_uri: MIXS:0000280 - multivalued: true range: string + multivalued: true gender_restroom: description: The gender type of the restroom title: gender of restroom @@ -7557,7 +7596,9 @@ slots: range: GenderRestroomEnum genetic_mod: annotations: - Expected_value: PMID, DOI, URL or text + Expected_value: + tag: Expected_value + value: PMID, DOI, URL or text description: Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient @@ -7568,10 +7609,10 @@ slots: string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000859 geo_loc_name: - description: The geographical origin of the sample as defined by the country or - sea name followed by specific region name. Country or sea names should be chosen - from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology - (http://purl.bioontology.org/ontology/GAZ) + description: The geographical origin of the sample as defined by the country + or sea name followed by specific region name. Country or sea names should be + chosen from the INSDC country list (http://insdc.org/country.html), or the + GAZ ontology (http://purl.bioontology.org/ontology/GAZ) title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' @@ -7583,7 +7624,7 @@ slots: slot_uri: MIXS:0000010 range: string required: true - pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$' + pattern: '^.*: .*, .*$' structured_pattern: syntax: '^{text}: {text}, {text}$' interpolated: true @@ -7595,7 +7636,9 @@ slots: range: string glucosidase_act: annotations: - Preferred_unit: mol per liter per hour + Preferred_unit: + tag: Preferred_unit + value: mol per liter per hour description: Measurement of glucosidase activity title: glucosidase activity examples: @@ -7603,7 +7646,7 @@ slots: slot_uri: MIXS:0000137 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -7618,13 +7661,17 @@ slots: slot_uri: MIXS:0000875 gravity: annotations: - Expected_value: gravity factor value;treatment interval and duration - Preferred_unit: meter per square second, g + Expected_value: + tag: Expected_value + value: gravity factor value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: meter per square second, g description: Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; - treatment regimen including how many times the treatment was repeated, how long - each treatment lasted, and the start and end time of the entire treatment; can - include multiple treatments + treatment regimen including how many times the treatment was repeated, how + long each treatment lasted, and the start and end time of the entire treatment; + can include multiple treatments title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -7633,10 +7680,12 @@ slots: multivalued: true growth_facil: annotations: - Expected_value: free text or CO - description: 'Type of facility where the sampled plant was grown; controlled vocabulary: - growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively - use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research' + Expected_value: + tag: Expected_value + value: free text or CO + description: 'Type of facility where the sampled plant was grown; controlled + vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, + field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research' title: growth facility examples: - value: Growth chamber [CO_715:0000189] @@ -7656,13 +7705,17 @@ slots: range: GrowthHabitEnum growth_hormone_regm: annotations: - Expected_value: growth hormone name;growth hormone amount;treatment interval and duration - Preferred_unit: gram, mole per liter, milligram per liter + Expected_value: + tag: Expected_value + value: growth hormone name;growth hormone amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Information about treatment involving use of growth hormones; should - include the name of growth hormone, amount administered, treatment regimen including - how many times the treatment was repeated, how long each treatment lasted, and - the start and end time of the entire treatment; can include multiple growth - hormone regimens + include the name of growth hormone, amount administered, treatment regimen + including how many times the treatment was repeated, how long each treatment + lasted, and the start and end time of the entire treatment; can include multiple + growth hormone regimens title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -7674,8 +7727,8 @@ slots: multivalued: true growth_medium: description: A liquid or gel containing nutrients, salts, and other factors formulated - to support the growth of microorganisms, cells, or plants (National Cancer Institute - Thesaurus). The name of the medium used to grow the microorganism + to support the growth of microorganisms, cells, or plants (National Cancer + Institute Thesaurus). The name of the medium used to grow the microorganism title: growth medium examples: - value: LB broth @@ -7691,8 +7744,8 @@ slots: keywords: - disorder slot_uri: MIXS:0000288 - multivalued: true range: string + multivalued: true hall_count: description: The total count of hallways and cooridors in the built structure title: hallway/corridor count @@ -7722,13 +7775,13 @@ slots: range: HcProducedEnum required: true hcr: - description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR - defined as a natural environmental feature containing large amounts of hydrocarbons - at high concentrations potentially suitable for commercial exploitation. This - term should not be confused with the Hydrocarbon Occurrence term which also - includes hydrocarbon-rich environments with currently limited commercial interest - such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose - entry in "additional info" field + description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" + HCR defined as a natural environmental feature containing large amounts of + hydrocarbons at high concentrations potentially suitable for commercial exploitation. + This term should not be confused with the Hydrocarbon Occurrence term which + also includes hydrocarbon-rich environments with currently limited commercial + interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, + please propose entry in "additional info" field title: hydrocarbon resource type examples: - value: Oil Sand @@ -7741,7 +7794,9 @@ slots: required: true hcr_fw_salinity: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS title: formation water salinity @@ -7752,7 +7807,7 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -7772,7 +7827,9 @@ slots: recommended: true hcr_pressure: annotations: - Preferred_unit: atmosphere, kilopascal + Preferred_unit: + tag: Preferred_unit + value: atmosphere, kilopascal description: Original pressure of the hydrocarbon resource title: hydrocarbon resource original pressure keywords: @@ -7788,7 +7845,9 @@ slots: partial_match: true hcr_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Original temperature of the hydrocarbon resource title: hydrocarbon resource original temperature examples: @@ -7812,9 +7871,9 @@ slots: keywords: - type slot_uri: MIXS:0000766 - multivalued: true range: HeatCoolTypeEnum required: true + multivalued: true heat_deliv_loc: description: The location of heat delivery within the room title: heating delivery locations @@ -7845,8 +7904,12 @@ slots: range: integer heavy_metals: annotations: - Expected_value: heavy metal name;measurement value unit - Preferred_unit: microgram per gram + Expected_value: + tag: Expected_value + value: heavy metal name;measurement value unit + Preferred_unit: + tag: Preferred_unit + value: microgram per gram description: Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field title: extreme_unusual_properties/heavy metals @@ -7876,7 +7939,9 @@ slots: partial_match: true height_carper_fiber: annotations: - Preferred_unit: centimeter + Preferred_unit: + tag: Preferred_unit + value: centimeter description: The average carpet fiber height in the indoor environment title: height carpet fiber mat keywords: @@ -7884,27 +7949,29 @@ slots: slot_uri: MIXS:0000167 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true herbicide_regm: annotations: - Preferred_unit: gram, mole per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of - herbicide, amount administered, treatment regimen including how many times the - treatment was repeated, how long each treatment lasted, and the start and end - time of the entire treatment; can include multiple regimens + herbicide, amount administered, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include multiple regimens title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen slot_uri: MIXS:0000561 - multivalued: true range: string + multivalued: true horizon_meth: description: Reference or method used in determining the horizon title: horizon method @@ -7920,7 +7987,9 @@ slots: partial_match: true host_age: annotations: - Preferred_unit: year, day, hour + Preferred_unit: + tag: Preferred_unit + value: year, day, hour description: Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees title: host age @@ -7931,7 +8000,7 @@ slots: slot_uri: MIXS:0000255 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -7948,7 +8017,9 @@ slots: range: string host_body_mass_index: annotations: - Preferred_unit: kilogram per square meter + Preferred_unit: + tag: Preferred_unit + value: kilogram per square meter description: Body mass index, calculated as weight/(height)squared title: host body-mass index examples: @@ -7959,14 +8030,16 @@ slots: slot_uri: MIXS:0000317 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_body_product: annotations: - Expected_value: FMA or UBERON + Expected_value: + tag: Expected_value + value: FMA or UBERON description: Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. Use terms from the foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) @@ -7982,10 +8055,12 @@ slots: slot_uri: MIXS:0000888 host_body_site: annotations: - Expected_value: FMA or UBERON - description: Name of body site where the sample was obtained from, such as a specific - organ or tissue (tongue, lung etc...). Use terms from the foundational model - of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON) + Expected_value: + tag: Expected_value + value: FMA or UBERON + description: Name of body site where the sample was obtained from, such as a + specific organ or tissue (tongue, lung etc...). Use terms from the foundational + model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON) title: host body site keywords: - body @@ -7995,7 +8070,9 @@ slots: slot_uri: MIXS:0000867 host_body_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Core body temperature of the host when sample was collected title: host body temperature keywords: @@ -8006,7 +8083,7 @@ slots: slot_uri: MIXS:0000274 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -8036,7 +8113,9 @@ slots: range: string host_common_name: annotations: - Preferred_unit: '' + Preferred_unit: + tag: Preferred_unit + value: '' description: Common name of the host title: host common name keywords: @@ -8064,14 +8143,16 @@ slots: - host - host. slot_uri: MIXS:0000869 - multivalued: true range: string + multivalued: true host_disease_stat: annotations: - Expected_value: disease name or Disease Ontology term + Expected_value: + tag: Expected_value + value: disease name or Disease Ontology term description: List of diseases with which the host has been diagnosed; can include - multiple diagnoses. The value of the field depends on host; for humans the terms - should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, + multiple diagnoses. The value of the field depends on host; for humans the + terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text title: host disease status in_subset: @@ -8085,7 +8166,9 @@ slots: slot_uri: MIXS:0000031 host_dry_mass: annotations: - Preferred_unit: kilogram, gram + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram description: Measurement of dry mass title: host dry mass examples: @@ -8098,14 +8181,16 @@ slots: slot_uri: MIXS:0000257 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_fam_rel: annotations: - Expected_value: relationship type;arbitrary identifier + Expected_value: + tag: Expected_value + value: relationship type;arbitrary identifier description: Relationships to other hosts in the same study; can include multiple relationships title: host family relationship @@ -8137,14 +8222,16 @@ slots: - host. slot_uri: MIXS:0000871 range: string - pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ structured_pattern: syntax: ^{PMID}|{DOI}|{URL}|{text}$ interpolated: true partial_match: true host_height: annotations: - Preferred_unit: centimeter, millimeter, meter + Preferred_unit: + tag: Preferred_unit + value: centimeter, millimeter, meter description: The height of subject title: host height keywords: @@ -8154,14 +8241,16 @@ slots: slot_uri: MIXS:0000264 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_hiv_stat: annotations: - Expected_value: HIV status;HAART initiation status + Expected_value: + tag: Expected_value + value: HIV status;HAART initiation status description: HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO] title: host HIV status @@ -8193,7 +8282,9 @@ slots: range: string host_last_meal: annotations: - Expected_value: content;duration + Expected_value: + tag: Expected_value + value: content;duration description: Content of last meal and time since feeding; can include multiple values title: host last meal @@ -8205,7 +8296,9 @@ slots: multivalued: true host_length: annotations: - Preferred_unit: centimeter, millimeter, meter + Preferred_unit: + tag: Preferred_unit + value: centimeter, millimeter, meter description: The length of subject title: host length examples: @@ -8217,25 +8310,29 @@ slots: slot_uri: MIXS:0000256 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_life_stage: annotations: - Expected_value: stage + Expected_value: + tag: Expected_value + value: stage description: Description of life stage of host title: host life stage keywords: - host - host. - life - range: string slot_uri: MIXS:0000251 + range: string host_number: annotations: - Expected_value: count + Expected_value: + tag: Expected_value + value: count description: Number of symbiotic host individuals pooled at the time of collection title: host number individual examples: @@ -8251,8 +8348,8 @@ slots: title: host occupation comments: - Couldn't convert host_occupation with value veterinary to integer - - almost all host_occupation values in the NCBI biosample_set are strings, not - integers + - almost all host_occupation values in the NCBI biosample_set are strings, + not integers examples: - value: veterinary keywords: @@ -8262,7 +8359,9 @@ slots: range: string host_of_host_coinf: annotations: - Expected_value: species name of coinfecting organism(s) + Expected_value: + tag: Expected_value + value: species name of coinfecting organism(s) description: The taxonomic name of any coinfecting organism observed in a symbiotic relationship with the host of the sampled host organism. e.g. where a sample collected from a host trematode species (A) which was collected from a host_of_host @@ -8278,15 +8377,18 @@ slots: - host. - observed - organism - range: string slot_uri: MIXS:0001310 + range: string host_of_host_disease: annotations: - Expected_value: disease name or Disease Ontology term + Expected_value: + tag: Expected_value + value: disease name or Disease Ontology term description: List of diseases with which the host of the symbiotic host organism - has been diagnosed; can include multiple diagnoses. The value of the field depends - on host; for humans the terms should be chosen from the DO (Human Disease Ontology) - at https://www.disease-ontology.org, non-human host diseases are free text + has been diagnosed; can include multiple diagnoses. The value of the field + depends on host; for humans the terms should be chosen from the DO (Human Disease + Ontology) at https://www.disease-ontology.org, non-human host diseases are + free text title: host of the symbiotic host disease status examples: - value: rabies [DOID:11260] @@ -8301,13 +8403,16 @@ slots: multivalued: true host_of_host_env_loc: annotations: - Expected_value: UBERON term(s), multiple values can be separated by pipes + Expected_value: + tag: Expected_value + value: UBERON term(s), multiple values can be separated by pipes description: For a symbiotic host organism the local anatomical environment within - its host may have causal influences. Report the anatomical entity(s) which are - in the direct environment of the symbiotic host organism being sampled and which - you believe have significant causal influences on your sample or specimen. For - example, if the symbiotic host organism being sampled is an intestinal worm, - its local environmental context will be the term for intestine from UBERON (http://uberon.github.io/) + its host may have causal influences. Report the anatomical entity(s) which + are in the direct environment of the symbiotic host organism being sampled + and which you believe have significant causal influences on your sample or + specimen. For example, if the symbiotic host organism being sampled is an intestinal + worm, its local environmental context will be the term for intestine from UBERON + (http://uberon.github.io/) title: host of the symbiotic host local environmental context examples: - value: small intestine[uberon:0002108] @@ -8322,7 +8427,10 @@ slots: multivalued: true host_of_host_env_med: annotations: - Expected_value: An ontology term for a material such as a tissue type or excreted substance + Expected_value: + tag: Expected_value + value: An ontology term for a material such as a tissue type or excreted + substance description: 'Report the environmental material(s) immediately surrounding the symbiotic host organism at the time of sampling. This usually will be a tissue or substance type from the host, but may be another material if the symbiont @@ -8346,7 +8454,9 @@ slots: slot_uri: MIXS:0001326 host_of_host_fam_rel: annotations: - Expected_value: relationship type;arbitrary identifier + Expected_value: + tag: Expected_value + value: relationship type;arbitrary identifier description: Familial relationship of the host of the symbiotic host organisms to other hosts of symbiotic host organism in the same study; can include multiple relationships @@ -8371,7 +8481,9 @@ slots: range: string host_of_host_gravid: annotations: - Expected_value: gravidity status;timestamp + Expected_value: + tag: Expected_value + value: gravidity status;timestamp description: Whether or not the host of the symbiotic host organism is gravid, and if yes date due or date post-conception, specifying which is used title: host of the symbiotic host gravidity @@ -8392,8 +8504,8 @@ slots: slot_uri: MIXS:0001329 range: string host_of_host_infrank: - description: Taxonomic rank information about the host of the symbiotic host organism - below subspecies level, such as variety, form, rank etc + description: Taxonomic rank information about the host of the symbiotic host + organism below subspecies level, such as variety, form, rank etc title: host of the symbiotic host infra-specific rank keywords: - host @@ -8415,7 +8527,9 @@ slots: range: string host_of_host_pheno: annotations: - Expected_value: phenotype of the host of the symbiotic organism; PATO + Expected_value: + tag: Expected_value + value: phenotype of the host of the symbiotic organism; PATO description: Phenotype of the host of the symbiotic host organism. For phenotypic quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato title: host of the symbiotic host phenotype @@ -8440,7 +8554,9 @@ slots: range: string host_of_host_taxid: annotations: - Expected_value: NCBI taxon identifier of the host of the symbiotic taxon organism + Expected_value: + tag: Expected_value + value: NCBI taxon identifier of the host of the symbiotic taxon organism description: NCBI taxon id of the host of the symbiotic host organism title: host of the symbiotic host taxon id examples: @@ -8466,16 +8582,18 @@ slots: slot_uri: MIXS:0001334 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_phenotype: annotations: - Expected_value: PATO or HP - description: Phenotype of human or other host. Use terms from the phenotypic quality - ontology (pato) or the Human Phenotype Ontology (HP) + Expected_value: + tag: Expected_value + value: PATO or HP + description: Phenotype of human or other host. Use terms from the phenotypic + quality ontology (pato) or the Human Phenotype Ontology (HP) title: host phenotype keywords: - host @@ -8501,7 +8619,7 @@ slots: title: host prediction estimated accuracy examples: - value: 'CRISPR spacer match: 0 or 1 mismatches, estimated 8% FDR at the host - genus rank (Edwards et al. 2016 doi:10.1093/femsre/fuv048)' + genus rank (Edwards et al. 2016 doi:10.1093/femsre/fuv048)' in_subset: - sequencing keywords: @@ -8512,7 +8630,9 @@ slots: range: string host_pulse: annotations: - Preferred_unit: beats per minute + Preferred_unit: + tag: Preferred_unit + value: beats per minute description: Resting pulse, measured as beats per minute title: host pulse examples: @@ -8523,14 +8643,16 @@ slots: slot_uri: MIXS:0000333 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_sex: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Gender or physical sex of the host title: host sex comments: @@ -8556,7 +8678,9 @@ slots: range: string host_spec_range: annotations: - Expected_value: NCBI taxid + Expected_value: + tag: Expected_value + value: NCBI taxid description: The range and diversity of host species that an organism is capable of infecting, defined by NCBI taxonomy identifier title: host specificity or range @@ -8594,13 +8718,15 @@ slots: range: string host_subspecf_genlin: annotations: - Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, - e.g. serovar, biotype, ecotype, variety, cultivar - description: Information about the genetic distinctness of the host organism below - the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, - or any relevant genetic typing schemes like Group I plasmid. Subspecies should - not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage - name and the lineage rank separated by a colon, e.g., biovar:abc123 + Expected_value: + tag: Expected_value + value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, + e.g. serovar, biotype, ecotype, variety, cultivar + description: Information about the genetic distinctness of the host organism + below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, + cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies + should not be recorded in this term, but in the NCBI taxonomy. Supply both + the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123 title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' @@ -8623,23 +8749,27 @@ slots: range: string host_symbiont: annotations: - Expected_value: species name or common name + Expected_value: + tag: Expected_value + value: species name or common name description: The taxonomic name of the organism(s) found living in mutualistic, - commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont - can have its own symbionts. For example, parasites may have hyperparasites (=parasites - of the parasite) + commensalistic, or parasitic symbiosis with the specific host. The sampled + symbiont can have its own symbionts. For example, parasites may have hyperparasites + (=parasites of the parasite) title: observed host symbionts keywords: - host - host. - observed - symbiosis - range: string slot_uri: MIXS:0001298 + range: string multivalued: true host_taxid: annotations: - Expected_value: NCBI taxon identifier + Expected_value: + tag: Expected_value + value: NCBI taxon identifier description: NCBI taxon id of the host, e.g. 9606 title: host taxid keywords: @@ -8649,7 +8779,9 @@ slots: slot_uri: MIXS:0000250 host_tot_mass: annotations: - Preferred_unit: kilogram, gram + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram description: Total mass of the host at collection, the unit depends on host title: host total mass keywords: @@ -8660,14 +8792,16 @@ slots: slot_uri: MIXS:0000263 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_wet_mass: annotations: - Preferred_unit: kilogram, gram + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram description: Measurement of wet mass title: host wet mass examples: @@ -8680,7 +8814,7 @@ slots: slot_uri: MIXS:0000567 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -8701,20 +8835,24 @@ slots: slot_uri: MIXS:0000100 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true humidity_regm: annotations: - Expected_value: humidity value;treatment interval and duration - Preferred_unit: gram per cubic meter + Expected_value: + tag: Expected_value + value: humidity value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram per cubic meter description: Information about treatment involving an exposure to varying degree - of humidity; information about treatment involving use of growth hormones; should - include amount of humidity administered, treatment regimen including how many - times the treatment was repeated, how long each treatment lasted, and the start - and end time of the entire treatment; can include multiple regimens + of humidity; information about treatment involving use of growth hormones; + should include amount of humidity administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple regimens title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -8726,7 +8864,9 @@ slots: multivalued: true hygienic_area: annotations: - Expected_value: Expected value + Expected_value: + tag: Expected_value + value: Expected value description: The subdivision of areas within a food production facility according to hygienic requirements. This field accepts terms listed under hygienic food production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that @@ -8739,8 +8879,8 @@ slots: - area - food - production - range: string slot_uri: MIXS:0001253 + range: string hysterectomy: description: Specification of whether hysterectomy was performed title: hysterectomy @@ -8756,8 +8896,8 @@ slots: keywords: - code slot_uri: MIXS:0000884 - multivalued: true range: integer + multivalued: true indoor_space: description: A distinguishable space within a structure, the purpose for which discrete areas of a building is used @@ -8781,7 +8921,9 @@ slots: range: IndoorSurfEnum indust_eff_percent: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: Percentage of industrial effluents received by wastewater treatment plant title: industrial effluent percent @@ -8790,17 +8932,21 @@ slots: slot_uri: MIXS:0000662 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true inorg_particles: annotations: - Expected_value: inorganic particle name;measurement value - Preferred_unit: mole per liter, milligram per liter - description: Concentration of particles such as sand, grit, metal particles, ceramics, - etc.; can include multiple particles + Expected_value: + tag: Expected_value + value: inorganic particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: mole per liter, milligram per liter + description: Concentration of particles such as sand, grit, metal particles, + ceramics, etc.; can include multiple particles title: inorganic particles keywords: - inorganic @@ -8810,7 +8956,9 @@ slots: multivalued: true inside_lux: annotations: - Preferred_unit: kilowatt per square metre + Preferred_unit: + tag: Preferred_unit + value: kilowatt per square metre description: The recorded value at sampling time (power density) title: inside lux light keywords: @@ -8819,7 +8967,7 @@ slots: slot_uri: MIXS:0000168 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -8838,10 +8986,12 @@ slots: range: DamagedEnum intended_consumer: annotations: - Expected_value: FOODON_03510136 or NCBI taxid - description: Food consumer type, human or animal, for which the food product is - produced and marketed. This field accepts terms listed under food consumer group - (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid + Expected_value: + tag: Expected_value + value: FOODON_03510136 or NCBI taxid + description: Food consumer type, human or animal, for which the food product + is produced and marketed. This field accepts terms listed under food consumer + group (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid title: intended consumer examples: - value: 9606 o rsenior as food consumer [FOODON:03510254] @@ -8883,7 +9033,9 @@ slots: range: datetime iwf: annotations: - Preferred_unit: percent + Preferred_unit: + tag: Preferred_unit + value: percent description: Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%) title: injection water fraction @@ -8899,7 +9051,7 @@ slots: range: float required: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -8912,8 +9064,8 @@ slots: keywords: - disorder slot_uri: MIXS:0000277 - multivalued: true range: string + multivalued: true last_clean: description: The last time the floor was cleaned (swept, mopped, vacuumed) title: last time swept/mopped/vacuumed @@ -8925,8 +9077,8 @@ slots: range: datetime lat_lon: description: The geographical origin of the sample as defined by latitude and - longitude. The values should be reported in decimal degrees, limited to 8 decimal points, - and in WGS84 system + longitude. The values should be reported in decimal degrees, limited to 8 decimal + points, and in WGS84 system title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 @@ -8967,7 +9119,9 @@ slots: range: integer lib_screen: annotations: - Expected_value: screening strategy name + Expected_value: + tag: Expected_value + value: screening strategy name description: Specific enrichment or screening methods applied before and/or after creating libraries title: library screening strategy @@ -8977,8 +9131,8 @@ slots: - sequencing keywords: - library - range: string slot_uri: MIXS:0000043 + range: string lib_size: description: Total number of clones in the library prepared for the project title: library size @@ -8993,7 +9147,9 @@ slots: range: integer lib_vector: annotations: - Expected_value: vector + Expected_value: + tag: Expected_value + value: vector description: Cloning vector type(s) used in construction of libraries title: library vector examples: @@ -9002,11 +9158,13 @@ slots: - sequencing keywords: - library - range: string slot_uri: MIXS:0000042 + range: string library_prep_kit: annotations: - Expected_value: name of library preparation kit + Expected_value: + tag: Expected_value + value: name of library preparation kit description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.), tailored for specific sequencing workflows, which allow the simplified preparation of sequencing-ready libraries for small genomes, amplicons, and plasmids @@ -9015,11 +9173,13 @@ slots: - kit - library - preparation - range: string slot_uri: MIXS:0001145 + range: string light_intensity: annotations: - Preferred_unit: lux + Preferred_unit: + tag: Preferred_unit + value: lux description: Measurement of light intensity title: light intensity examples: @@ -9030,15 +9190,19 @@ slots: slot_uri: MIXS:0000706 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true light_regm: annotations: - Expected_value: exposure type;light intensity;light quality - Preferred_unit: lux; micrometer, nanometer, angstrom + Expected_value: + tag: Expected_value + value: exposure type;light intensity;light quality + Preferred_unit: + tag: Preferred_unit + value: lux; micrometer, nanometer, angstrom description: Information about treatment(s) involving exposure to light, including both light intensity and quality title: light regimen @@ -9052,8 +9216,8 @@ slots: light_type: description: Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and - light fixtures, as well as natural illumination by capturing daylight. Can also - include absence of light + light fixtures, as well as natural illumination by capturing daylight. Can + also include absence of light title: light type examples: - value: desk lamp @@ -9061,9 +9225,9 @@ slots: - light - type slot_uri: MIXS:0000769 - multivalued: true range: LightTypeEnum required: true + multivalued: true link_addit_analys: description: Link to additional analysis results performed on the sample title: links to additional analysis @@ -9078,7 +9242,9 @@ slots: partial_match: true link_class_info: annotations: - Expected_value: PMID,DOI or url + Expected_value: + tag: Expected_value + value: PMID,DOI or url description: Link to digitized soil maps or other soil classification information title: link to classification information keywords: @@ -9112,24 +9278,26 @@ slots: range: LithologyEnum recommended: true liver_disord: - description: History of liver disorders; can include multiple disorders. The terms - should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + description: History of liver disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, liver disease (https://disease-ontology.org/?id=DOID:409) title: liver disorder keywords: - disorder slot_uri: MIXS:0000282 - multivalued: true range: string + multivalued: true local_class: annotations: - Expected_value: local classification name + Expected_value: + tag: Expected_value + value: local classification name description: Soil classification based on local soil classification system title: soil_taxonomic/local classification keywords: - classification - range: string slot_uri: MIXS:0000330 + range: string local_class_meth: description: Reference or method used in determining the local soil classification title: soil_taxonomic/local classification method @@ -9145,7 +9313,9 @@ slots: partial_match: true lot_number: annotations: - Expected_value: lot number, item + Expected_value: + tag: Expected_value + value: lot number, item description: 'A distinctive alpha-numeric identification code assigned by the manufacturer or distributor to a specific quantity of manufactured material or product within a batch. Synonym: Batch Number. The submitter should provide @@ -9173,8 +9343,10 @@ slots: range: MagCovSoftwareEnum magnesium: annotations: - Preferred_unit: mole per liter, milligram per liter, parts per million, micromole per - kilogram + Preferred_unit: + tag: Preferred_unit + value: mole per liter, milligram per liter, parts per million, micromole + per kilogram description: Concentration of magnesium in the sample title: magnesium examples: @@ -9182,7 +9354,7 @@ slots: slot_uri: MIXS:0000431 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9201,14 +9373,16 @@ slots: - maximum slot_uri: MIXS:0000229 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true mean_frict_vel: annotations: - Preferred_unit: meter per second + Preferred_unit: + tag: Preferred_unit + value: meter per second description: Measurement of mean friction velocity title: mean friction velocity examples: @@ -9219,14 +9393,16 @@ slots: slot_uri: MIXS:0000498 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true mean_peak_frict_vel: annotations: - Preferred_unit: meter per second + Preferred_unit: + tag: Preferred_unit + value: meter per second description: Measurement of mean peak friction velocity title: mean peak friction velocity examples: @@ -9238,7 +9414,7 @@ slots: slot_uri: MIXS:0000502 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9252,7 +9428,9 @@ slots: range: MechStrucEnum mechanical_damage: annotations: - Expected_value: damage type;body site + Expected_value: + tag: Expected_value + value: damage type;body site description: Information about any mechanical damage exerted on the plant; can include multiple damages and sites title: mechanical damage @@ -9286,13 +9464,15 @@ slots: range: datetime methane: annotations: - Preferred_unit: micromole per liter, parts per billion, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per billion, parts per million description: Methane (gas) amount or concentration at the time of sampling title: methane slot_uri: MIXS:0000101 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9329,16 +9509,18 @@ slots: - microbiological slot_uri: MIXS:0001216 range: string - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ structured_pattern: syntax: ^{text}|({termLabel} \[{termID}\])$ interpolated: true partial_match: true microb_start: annotations: - Expected_value: FOODON:03544453 - description: Any type of microorganisms used in food production. This field accepts - terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453) + Expected_value: + tag: Expected_value + value: FOODON:03544453 + description: Any type of microorganisms used in food production. This field + accepts terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453) title: microbial starter examples: - value: starter cultures [FOODON:03544454] @@ -9348,16 +9530,21 @@ slots: slot_uri: MIXS:0001217 microb_start_count: annotations: - Expected_value: organism name; measurement value; enumeration - Preferred_unit: colony forming units per milliliter; colony forming units per gram - of dry weight + Expected_value: + tag: Expected_value + value: organism name; measurement value; enumeration + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight description: 'Total cell count of starter culture per gram, volume or area of sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided. (example : total prokaryotes; 3.5e7 cells per ml; qPCR)' title: microbial starter organism count examples: - - value: total prokaryotes;3.5e9 colony forming units per milliliter;spread plate + - value: total prokaryotes;3.5e9 colony forming units per milliliter;spread + plate keywords: - count - microbial @@ -9366,7 +9553,9 @@ slots: slot_uri: MIXS:0001218 microb_start_inoc: annotations: - Preferred_unit: milligram or gram + Preferred_unit: + tag: Preferred_unit + value: milligram or gram description: The amount of starter culture used to inoculate a new batch title: microbial starter inoculation examples: @@ -9376,7 +9565,7 @@ slots: slot_uri: MIXS:0001219 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9424,7 +9613,9 @@ slots: partial_match: true microbial_biomass: annotations: - Preferred_unit: ton, kilogram, gram per kilogram soil + Preferred_unit: + tag: Preferred_unit + value: ton, kilogram, gram per kilogram soil description: The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units @@ -9435,7 +9626,7 @@ slots: slot_uri: MIXS:0000650 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9460,14 +9651,18 @@ slots: partial_match: true mineral_nutr_regm: annotations: - Expected_value: mineral nutrient name;mineral nutrient amount;treatment interval and - duration - Preferred_unit: gram, mole per liter, milligram per liter + Expected_value: + tag: Expected_value + value: mineral nutrient name;mineral nutrient amount;treatment interval and + duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment - regimen including how many times the treatment was repeated, how long each treatment - lasted, and the start and end time of the entire treatment; can include multiple - mineral nutrient regimens + regimen including how many times the treatment was repeated, how long each + treatment lasted, and the start and end time of the entire treatment; can include + multiple mineral nutrient regimens title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -9480,9 +9675,11 @@ slots: multivalued: true misc_param: annotations: - Expected_value: parameter name;measurement value - description: Any other measurement performed or parameter collected, that is not - listed here + Expected_value: + tag: Expected_value + value: parameter name;measurement value + description: Any other measurement performed or parameter collected, that is + not listed here title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram @@ -9502,7 +9699,9 @@ slots: recommended: true n_alkanes: annotations: - Expected_value: n-alkane name;measurement value + Expected_value: + tag: Expected_value + value: n-alkane name;measurement value description: Concentration of n-alkanes; can include multiple n-alkanes title: n-alkanes examples: @@ -9512,7 +9711,9 @@ slots: multivalued: true neg_cont_type: annotations: - Expected_value: enumeration or text + Expected_value: + tag: Expected_value + value: enumeration or text description: The substance or equipment used as a negative control in an investigation title: negative control type in_subset: @@ -9524,7 +9725,9 @@ slots: recommended: true nitrate: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: Concentration of nitrate in the sample title: nitrate examples: @@ -9534,14 +9737,16 @@ slots: slot_uri: MIXS:0000425 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true nitrite: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: Concentration of nitrite in the sample title: nitrite examples: @@ -9551,14 +9756,16 @@ slots: slot_uri: MIXS:0000426 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true nitro: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Concentration of nitrogen (total) title: nitrogen examples: @@ -9568,14 +9775,16 @@ slots: slot_uri: MIXS:0000504 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true non_min_nutr_regm: annotations: - Preferred_unit: gram, mole per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the @@ -9589,20 +9798,20 @@ slots: - nutrient - regimen slot_uri: MIXS:0000571 - multivalued: true range: string + multivalued: true nose_mouth_teeth_throat_disord: description: History of nose/mouth/teeth/throat disorders; can include multiple - disorders. The terms should be chosen from the DO (Human Disease Ontology) at - http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825), + disorders. The terms should be chosen from the DO (Human Disease Ontology) + at http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825), mouth disease (https://disease-ontology.org/?id=DOID:403), tooth disease (https://disease-ontology.org/?id=DOID:1091), or upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974) title: nose/mouth/teeth/throat disorder keywords: - disorder slot_uri: MIXS:0000283 - multivalued: true range: string + multivalued: true nose_throat_disord: description: History of nose-throat disorders; can include multiple disorders, The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, @@ -9612,8 +9821,8 @@ slots: keywords: - disorder slot_uri: MIXS:0000270 - multivalued: true range: string + multivalued: true nucl_acid_amp: description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, @@ -9648,20 +9857,24 @@ slots: partial_match: true nucl_acid_ext_kit: annotations: - Expected_value: The name of an extraction kit - description: The name of the extraction kit used to recover the nucleic acid fraction - of an input material is performed + Expected_value: + tag: Expected_value + value: The name of an extraction kit + description: The name of the extraction kit used to recover the nucleic acid + fraction of an input material is performed title: nucleic acid extraction kit examples: - value: Qiagen PowerSoil Kit keywords: - kit - range: string slot_uri: MIXS:0001223 + range: string multivalued: true num_replicons: annotations: - Expected_value: 'for eukaryotes and bacteria: chromosomes (haploid count); for viruses: + Expected_value: + tag: Expected_value + value: 'for eukaryotes and bacteria: chromosomes (haploid count); for viruses: segments' description: Reports the number of replicons in a nuclear genome of eukaryotes, in the genome of a bacterium or archaea or the number of segments in a segmented @@ -9687,7 +9900,7 @@ slots: slot_uri: MIXS:0001224 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9711,7 +9924,7 @@ slots: - number slot_uri: MIXS:0000231 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -9723,7 +9936,7 @@ slots: - number slot_uri: MIXS:0000230 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -9735,7 +9948,7 @@ slots: - number slot_uri: MIXS:0000232 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -9767,7 +9980,7 @@ slots: slot_uri: MIXS:0000772 range: float required: true - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -9783,22 +9996,26 @@ slots: slot_uri: MIXS:0000508 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true org_count_qpcr_info: annotations: - Expected_value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial - denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final - elongation:degrees_minutes; total cycles - Preferred_unit: number of cells per gram (or ml or cm^2) - description: 'If qpcr was used for the cell count, the target gene name, the primer - sequence and the cycling conditions should also be provided. (Example: 16S rrna; - FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; - annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; - 30 cycles)' + Expected_value: + tag: Expected_value + value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial + denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes; total cycles + Preferred_unit: + tag: Preferred_unit + value: number of cells per gram (or ml or cm^2) + description: 'If qpcr was used for the cell count, the target gene name, the + primer sequence and the cycling conditions should also be provided. (Example: + 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; + denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for + 1 min; final elongation:72C_5min; 30 cycles)' title: organism count qPCR information keywords: - count @@ -9809,7 +10026,9 @@ slots: slot_uri: MIXS:0000099 org_matter: annotations: - Preferred_unit: microgram per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter description: Concentration of organic matter title: organic matter examples: @@ -9819,7 +10038,7 @@ slots: slot_uri: MIXS:0000204 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9835,15 +10054,19 @@ slots: slot_uri: MIXS:0000205 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true org_particles: annotations: - Expected_value: particle name;measurement value - Preferred_unit: gram per liter + Expected_value: + tag: Expected_value + value: particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram per liter description: Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc title: organic particles @@ -9855,7 +10078,9 @@ slots: multivalued: true organism_count: annotations: - Expected_value: organism name;measurement value;enumeration + Expected_value: + tag: Expected_value + value: organism name;measurement value;enumeration description: 'Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should @@ -9869,11 +10094,13 @@ slots: multivalued: true otu_class_appr: annotations: - Expected_value: cutoffs and method used - description: Cutoffs and approach used when clustering species-level OTUs. Note - that results from standard 95% ANI / 85% AF clustering should be provided alongside - OTUS defined from another set of thresholds, even if the latter are the ones - primarily used during the analysis + Expected_value: + tag: Expected_value + value: cutoffs and method used + description: Cutoffs and approach used when clustering species-level OTUs. + Note that results from standard 95% ANI / 85% AF clustering should be provided + alongside OTUS defined from another set of thresholds, even if the latter are + the ones primarily used during the analysis title: OTU classification approach examples: - value: 95% ANI;85% AF; greedy incremental clustering @@ -9886,9 +10113,11 @@ slots: slot_uri: MIXS:0000085 otu_db: annotations: - Expected_value: database and version - description: Reference database (i.e. sequences not generated as part of the current - study) used to cluster new genomes in "species-level" OTUs, if any + Expected_value: + tag: Expected_value + value: database and version + description: Reference database (i.e. sequences not generated as part of the + current study) used to cluster new genomes in "species-level" OTUs, if any title: OTU database examples: - value: NCBI Viral RefSeq;83 @@ -9901,7 +10130,9 @@ slots: slot_uri: MIXS:0000087 otu_seq_comp_appr: annotations: - Expected_value: software name, version and relevant parameters + Expected_value: + tag: Expected_value + value: software name, version and relevant parameters description: Tool and thresholds used to compare sequences when computing "species-level" OTUs title: OTU sequence comparison approach @@ -9915,8 +10146,11 @@ slots: slot_uri: MIXS:0000086 owc_tvdss: annotations: - Preferred_unit: meter - description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS) + Preferred_unit: + tag: Preferred_unit + value: meter + description: Depth of the original oil water contact (OWC) zone (average) (m + TVDSS) title: oil water contact depth keywords: - depth @@ -9925,7 +10159,7 @@ slots: slot_uri: MIXS:0000405 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9943,7 +10177,9 @@ slots: range: OxyStatSampEnum oxygen: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Oxygen (gas) amount or concentration at the time of sampling title: oxygen examples: @@ -9953,7 +10189,7 @@ slots: slot_uri: MIXS:0000104 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -9971,14 +10207,16 @@ slots: slot_uri: MIXS:0000515 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true part_org_nitro: annotations: - Preferred_unit: microgram per liter, micromole per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter description: Concentration of particulate organic nitrogen title: particulate organic nitrogen examples: @@ -9991,14 +10229,16 @@ slots: slot_uri: MIXS:0000719 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true part_plant_animal: annotations: - Expected_value: FOODON:03420116 + Expected_value: + tag: Expected_value + value: FOODON:03420116 description: The anatomical part of the organism being involved in food production or consumption; e.g., a carrot is the root of the plant (root vegetable). This field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116) @@ -10013,11 +10253,16 @@ slots: multivalued: true particle_class: annotations: - Expected_value: particle name;measurement value - Preferred_unit: micrometer - description: Particles are classified, based on their size, into six general categories:clay, - silt, sand, gravel, cobbles, and boulders; should include amount of particle - preceded by the name of the particle type; can include multiple values + Expected_value: + tag: Expected_value + value: particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Particles are classified, based on their size, into six general + categories:clay, silt, sand, gravel, cobbles, and boulders; should include + amount of particle preceded by the name of the particle type; can include multiple + values title: particle classification keywords: - classification @@ -10027,20 +10272,25 @@ slots: multivalued: true pathogenicity: annotations: - Expected_value: names of organisms that the entity is pathogenic to + Expected_value: + tag: Expected_value + value: names of organisms that the entity is pathogenic to description: To what is the entity pathogenic title: known pathogenicity examples: - value: human, animal, plant, fungi, bacteria in_subset: - nucleic acid sequence source - range: string slot_uri: MIXS:0000027 + range: string pcr_cond: annotations: - Expected_value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final - elongation:degrees_minutes;total cycles - description: Description of reaction conditions and components of polymerase chain reaction performed during library preparation. + Expected_value: + tag: Expected_value + value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes;total cycles + description: Description of reaction conditions and components of polymerase + chain reaction performed during library preparation. title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 @@ -10055,11 +10305,14 @@ slots: slot_uri: MIXS:0000049 pcr_primers: annotations: - Expected_value: 'FWD: forward primer sequence;REV:reverse primer sequence' + Expected_value: + tag: Expected_value + value: 'FWD: forward primer sequence;REV:reverse primer sequence' description: PCR primers that were used to amplify the sequence of the targeted - gene, locus or subfragment. This field should contain all the primers used for - a single PCR reaction if multiple forward or reverse primers are present in - a single PCR reaction. The primer sequence should be reported in uppercase letters + gene, locus or subfragment. This field should contain all the primers used + for a single PCR reaction if multiple forward or reverse primers are present + in a single PCR reaction. The primer sequence should be reported in uppercase + letters title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT @@ -10071,8 +10324,12 @@ slots: slot_uri: MIXS:0000046 permeability: annotations: - Expected_value: measurement value range - Preferred_unit: mD + Expected_value: + tag: Expected_value + value: measurement value range + Preferred_unit: + tag: Preferred_unit + value: mD description: 'Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))' title: permeability @@ -10080,7 +10337,9 @@ slots: slot_uri: MIXS:0000404 perturbation: annotations: - Expected_value: perturbation type name;perturbation interval and duration + Expected_value: + tag: Expected_value + value: perturbation type name;perturbation interval and duration description: Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time @@ -10095,11 +10354,13 @@ slots: multivalued: true pesticide_regm: annotations: - Preferred_unit: gram, mole per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter description: Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including - how many times the treatment was repeated, how long each treatment lasted, and - the start and end time of the entire treatment; can include multiple pesticide + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple pesticide regimens title: pesticide regimen examples: @@ -10107,11 +10368,13 @@ slots: keywords: - regimen slot_uri: MIXS:0000573 - multivalued: true range: string + multivalued: true pet_farm_animal: annotations: - Expected_value: presence status;type of animal or pet + Expected_value: + tag: Expected_value + value: presence status;type of animal or pet description: Specification of presence of pets or farm animals in the environment of subject, if yes the animals should be specified; can include multiple animals present @@ -10127,7 +10390,9 @@ slots: multivalued: true petroleum_hydrocarb: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Concentration of petroleum hydrocarbon title: petroleum hydrocarbon examples: @@ -10138,7 +10403,7 @@ slots: slot_uri: MIXS:0000516 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -10180,12 +10445,16 @@ slots: - ph - regimen slot_uri: MIXS:0001056 - multivalued: true range: string + multivalued: true phaeopigments: annotations: - Expected_value: phaeopigment name;measurement value - Preferred_unit: milligram per cubic meter + Expected_value: + tag: Expected_value + value: phaeopigment name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter description: Concentration of phaeopigments; can include multiple phaeopigments title: phaeopigments examples: @@ -10195,7 +10464,9 @@ slots: multivalued: true phosphate: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Concentration of phosphate title: phosphate examples: @@ -10205,15 +10476,18 @@ slots: slot_uri: MIXS:0000505 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true phosplipid_fatt_acid: annotations: - Expected_value: phospholipid fatty acid name;measurement value - description: Concentration of phospholipid fatty acids; can include multiple values + Expected_value: + tag: Expected_value + value: phospholipid fatty acid name;measurement value + description: Concentration of phospholipid fatty acids; can include multiple + values title: phospholipid fatty acid examples: - value: 2.98 milligram per liter @@ -10222,7 +10496,9 @@ slots: multivalued: true photon_flux: annotations: - Preferred_unit: number of photons per second per unit area + Preferred_unit: + tag: Preferred_unit + value: number of photons per second per unit area description: Measurement of photon flux title: photon flux examples: @@ -10230,17 +10506,19 @@ slots: slot_uri: MIXS:0000725 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true photosynt_activ: annotations: - Preferred_unit: mol m-2 s-1 - description: Measurement of photosythetic activity (i.e. leaf gas exchange / chlorophyll - fluorescence emissions / reflectance / transpiration) Please also include the - term method term detailing the method of activity measurement + Preferred_unit: + tag: Preferred_unit + value: mol m-2 s-1 + description: Measurement of photosythetic activity (i.e. leaf gas exchange / + chlorophyll fluorescence emissions / reflectance / transpiration) Please also + include the term method term detailing the method of activity measurement title: photosynthetic activity examples: - value: 0.1 mol CO2 m-2 s-1 @@ -10250,7 +10528,7 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -10261,17 +10539,19 @@ slots: keywords: - method slot_uri: MIXS:0001336 - multivalued: true range: string recommended: true - pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + multivalued: true + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ structured_pattern: syntax: ^{PMID}|{DOI}|{URL}|{text}$ interpolated: true partial_match: true plant_growth_med: annotations: - Expected_value: EO or enumeration + Expected_value: + tag: Expected_value + value: EO or enumeration description: Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant @@ -10286,7 +10566,9 @@ slots: slot_uri: MIXS:0001057 plant_part_maturity: annotations: - Expected_value: FOODON:03530050 + Expected_value: + tag: Expected_value + value: FOODON:03530050 description: A description of the stage of development of a plant or plant part based on maturity or ripeness. This field accepts terms listed under degree of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050) @@ -10300,7 +10582,9 @@ slots: slot_uri: MIXS:0001120 plant_product: annotations: - Expected_value: product name + Expected_value: + tag: Expected_value + value: product name description: Substance produced by the plant, where the sample was obtained from title: plant product examples: @@ -10308,8 +10592,8 @@ slots: keywords: - plant - product - range: string slot_uri: MIXS:0001058 + range: string plant_reprod_crop: description: Plant reproductive part used in the field during planting to start the crop @@ -10319,8 +10603,8 @@ slots: keywords: - plant slot_uri: MIXS:0001150 - multivalued: true range: PlantReprodCropEnum + multivalued: true plant_sex: description: Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite @@ -10332,8 +10616,8 @@ slots: slot_uri: MIXS:0001059 range: PlantSexEnum plant_struc: - description: Name of plant structure the sample was obtained from; for Plant Ontology - (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, + description: Name of plant structure the sample was obtained from; for Plant + Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here title: plant structure @@ -10349,8 +10633,8 @@ slots: interpolated: true partial_match: true plant_water_method: - description: Description of the equipment or method used to distribute water to - crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). + description: Description of the equipment or method used to distribute water + to crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). Multiple terms can be separated by pipes title: plant water delivery method examples: @@ -10389,8 +10673,12 @@ slots: partial_match: true pollutants: annotations: - Expected_value: pollutant name;measurement value - Preferred_unit: gram, mole per liter, milligram per liter, microgram per cubic meter + Expected_value: + tag: Expected_value + value: pollutant name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter, microgram per cubic meter description: Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant @@ -10402,8 +10690,12 @@ slots: multivalued: true pool_dna_extracts: annotations: - Expected_value: pooling status;number of pooled extracts - Preferred_unit: gram, milliliter, microliter + Expected_value: + tag: Expected_value + value: pooling status;number of pooled extracts + Preferred_unit: + tag: Preferred_unit + value: gram, milliliter, microliter description: Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given title: pooling of DNA extracts (if done) @@ -10415,8 +10707,12 @@ slots: slot_uri: MIXS:0000325 porosity: annotations: - Expected_value: measurement value or range - Preferred_unit: percentage + Expected_value: + tag: Expected_value + value: measurement value or range + Preferred_unit: + tag: Preferred_unit + value: percentage description: Porosity of deposited sediment is volume of voids divided by the total volume of sample title: porosity @@ -10437,7 +10733,9 @@ slots: recommended: true potassium: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of potassium in the sample title: potassium examples: @@ -10445,35 +10743,39 @@ slots: slot_uri: MIXS:0000430 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true pour_point: annotations: - Preferred_unit: degree Celsius - description: 'Temperature at which a liquid becomes semi solid and loses its flow - characteristics. In crude oil a high pour point is generally associated with - a high paraffin content, typically found in crude deriving from a larger proportion - of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)' + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: 'Temperature at which a liquid becomes semi solid and loses its + flow characteristics. In crude oil a high pour point is generally associated + with a high paraffin content, typically found in crude deriving from a larger + proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)' title: pour point slot_uri: MIXS:0000127 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true pre_treatment: annotations: - Expected_value: pre-treatment type + Expected_value: + tag: Expected_value + value: pre-treatment type description: The process of pre-treatment removes materials that can be easily collected from the raw wastewater title: pre-treatment - range: string slot_uri: MIXS:0000348 + range: string pred_genome_struc: description: Expected structure of the viral genome title: predicted genome structure @@ -10487,7 +10789,9 @@ slots: range: PredGenomeStrucEnum pred_genome_type: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Type of genome predicted for the UViG title: predicted genome type examples: @@ -10508,7 +10812,9 @@ slots: range: datetime pres_animal_insect: annotations: - Expected_value: enumeration;count + Expected_value: + tag: Expected_value + value: enumeration;count description: The type and number of animals or insects present in the sampling space title: presence of pets, animals, or insects @@ -10521,7 +10827,9 @@ slots: slot_uri: MIXS:0000819 pressure: annotations: - Preferred_unit: atmosphere + Preferred_unit: + tag: Preferred_unit + value: atmosphere description: Pressure to which the sample is subject to, in atmospheres title: pressure examples: @@ -10531,7 +10839,7 @@ slots: slot_uri: MIXS:0000412 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -10553,7 +10861,9 @@ slots: partial_match: true previous_land_use: annotations: - Expected_value: land use name;date + Expected_value: + tag: Expected_value + value: land use name;date description: Previous land use and dates title: history/previous land use examples: @@ -10566,7 +10876,9 @@ slots: slot_uri: MIXS:0000315 primary_prod: annotations: - Preferred_unit: milligram per cubic meter per day, gram per square meter per day + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day, gram per square meter per day description: Measurement of primary production, generally measured as isotope uptake title: primary production @@ -10578,14 +10890,16 @@ slots: slot_uri: MIXS:0000728 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true primary_treatment: annotations: - Expected_value: primary treatment type + Expected_value: + tag: Expected_value + value: primary treatment type description: The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed @@ -10593,23 +10907,25 @@ slots: keywords: - primary - treatment - range: string slot_uri: MIXS:0000349 + range: string prod_label_claims: description: Labeling claims containing descriptors such as wild caught, free-range, - organic, free-range, industrial, hormone-free, antibiotic free, cage free. Can - include more than one term, separated by ";" + organic, free-range, industrial, hormone-free, antibiotic free, cage free. + Can include more than one term, separated by ";" title: production labeling claims examples: - value: free range keywords: - production slot_uri: MIXS:prod_label_claims - multivalued: true range: string + multivalued: true prod_rate: annotations: - Preferred_unit: cubic meter per day + Preferred_unit: + tag: Preferred_unit + value: cubic meter per day description: Oil and/or gas production rates per well (e.g. 524 m3 / day) title: production rate keywords: @@ -10619,7 +10935,7 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -10658,7 +10974,9 @@ slots: required: true propagation: annotations: - Expected_value: 'for virus: lytic, lysogenic, temperate, obligately lytic; for plasmid: + Expected_value: + tag: Expected_value + value: 'for virus: lytic, lysogenic, temperate, obligately lytic; for plasmid: incompatibility group; for eukaryote: asexual, sexual; other more specific values (e.g., incompatibility group) are allowed' description: 'The type of reproduction from the parent stock. Values for this @@ -10669,18 +10987,18 @@ slots: - value: lytic in_subset: - nucleic acid sequence source - range: string slot_uri: MIXS:0000033 + range: string pulmonary_disord: - description: History of pulmonary disorders; can include multiple disorders. The - terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + description: History of pulmonary disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850) title: lung/pulmonary disorder keywords: - disorder slot_uri: MIXS:0000269 - multivalued: true range: string + multivalued: true quad_pos: description: The quadrant position of the sampling room within the building title: quadrant position @@ -10690,13 +11008,17 @@ slots: range: QuadPosEnum radiation_regm: annotations: - Expected_value: radiation type name;radiation amount;treatment interval and duration - Preferred_unit: rad, gray + Expected_value: + tag: Expected_value + value: radiation type name;radiation amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: rad, gray description: Information about treatment involving exposure of plant or a plant - part to a particular radiation regimen; should include the radiation type, amount - or intensity administered, treatment regimen including how many times the treatment - was repeated, how long each treatment lasted, and the start and end time of - the entire treatment; can include multiple radiation regimens + part to a particular radiation regimen; should include the radiation type, + amount or intensity administered, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include multiple radiation regimens title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -10707,8 +11029,12 @@ slots: multivalued: true rainfall_regm: annotations: - Expected_value: measurement value;treatment interval and duration - Preferred_unit: millimeter + Expected_value: + tag: Expected_value + value: measurement value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: millimeter description: Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; @@ -10724,18 +11050,20 @@ slots: multivalued: true reactor_type: annotations: - Expected_value: reactor type name + Expected_value: + tag: Expected_value + value: reactor type name description: Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage title: reactor type keywords: - type - range: string slot_uri: MIXS:0000350 + range: string reassembly_bin: - description: Has an assembly been performed on a genome bin extracted from a metagenomic - assembly? + description: Has an assembly been performed on a genome bin extracted from a + metagenomic assembly? title: reassembly post binning examples: - value: 'no' @@ -10747,7 +11075,9 @@ slots: range: boolean redox_potential: annotations: - Preferred_unit: millivolt + Preferred_unit: + tag: Preferred_unit + value: millivolt description: Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential title: redox potential @@ -10756,7 +11086,7 @@ slots: slot_uri: MIXS:0000182 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -10778,9 +11108,11 @@ slots: partial_match: true ref_db: annotations: - Expected_value: names, versions, and references of databases - description: List of database(s) used for ORF annotation, along with version number - and reference to website or publication + Expected_value: + tag: Expected_value + value: names, versions, and references of databases + description: List of database(s) used for ORF annotation, along with version + number and reference to website or publication title: reference database(s) examples: - value: pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 @@ -10793,7 +11125,9 @@ slots: slot_uri: MIXS:0000062 rel_air_humidity: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air title: relative air humidity @@ -10809,14 +11143,16 @@ slots: range: float required: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true rel_humidity_out: annotations: - Preferred_unit: gram of air, kilogram of air + Preferred_unit: + tag: Preferred_unit + value: gram of air, kilogram of air description: The recorded outside relative humidity value at the time of sampling title: outside relative humidity examples: @@ -10827,7 +11163,7 @@ slots: slot_uri: MIXS:0000188 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -10869,15 +11205,17 @@ slots: range: RelToOxygenEnum repository_name: annotations: - Expected_value: Institution + Expected_value: + tag: Expected_value + value: Institution description: The name of the institution where the sample or DNA extract is held or "sample not available" if the sample was used in its entirety for analysis or otherwise not retained title: repository name examples: - value: FDA CFSAN Microbiology Laboratories - range: string slot_uri: MIXS:0001152 + range: string multivalued: true reservoir: description: Name of the reservoir (e.g. Carapebus) @@ -10887,24 +11225,28 @@ slots: recommended: true resins_pc: annotations: - Preferred_unit: percent + Preferred_unit: + tag: Preferred_unit + value: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most - popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: - https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: resins wt% slot_uri: MIXS:0000134 range: string recommended: true - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true room_air_exch_rate: annotations: - Preferred_unit: liter per hour + Preferred_unit: + tag: Preferred_unit + value: liter per hour description: The rate at which outside air replaces indoor air in a given space title: room air exchange rate keywords: @@ -10914,14 +11256,14 @@ slots: slot_uri: MIXS:0000169 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true room_architec_elem: - description: The unique details and component parts that, together, form the architecture - of a distinguisahable space within a built structure + description: The unique details and component parts that, together, form the + architecture of a distinguisahable space within a built structure title: room architectural elements keywords: - room @@ -10958,8 +11300,12 @@ slots: range: integer room_dim: annotations: - Expected_value: measurement value - Preferred_unit: meter + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: meter description: The length, width and height of sampling room title: room dimensions examples: @@ -10971,7 +11317,9 @@ slots: slot_uri: MIXS:0000192 room_door_dist: annotations: - Preferred_unit: meter + Preferred_unit: + tag: Preferred_unit + value: meter description: Distance between doors (meters) in the hallway between the sampling room and adjacent rooms title: room door distance @@ -10981,7 +11329,7 @@ slots: - room slot_uri: MIXS:0000193 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -11036,7 +11384,9 @@ slots: range: integer room_net_area: annotations: - Preferred_unit: square feet, square meter + Preferred_unit: + tag: Preferred_unit + value: square feet, square meter description: The net floor area of sampling room. Net area excludes wall thicknesses title: room net area keywords: @@ -11044,7 +11394,7 @@ slots: - room slot_uri: MIXS:0000194 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -11056,7 +11406,7 @@ slots: - room slot_uri: MIXS:0000236 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -11073,7 +11423,9 @@ slots: range: RoomSampPosEnum room_type: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: The main purpose or activity of the sampling room. A room is any distinguishable space within a structure title: room type @@ -11088,7 +11440,9 @@ slots: slot_uri: MIXS:0000825 room_vol: annotations: - Preferred_unit: cubic feet, cubic meter + Preferred_unit: + tag: Preferred_unit + value: cubic feet, cubic meter description: Volume of sampling room title: room volume keywords: @@ -11096,7 +11450,7 @@ slots: - volume slot_uri: MIXS:0000195 range: string - pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^[1-9][0-9]* .*$ structured_pattern: syntax: ^{integer} {text}$ interpolated: true @@ -11134,15 +11488,19 @@ slots: - condition slot_uri: MIXS:0001061 range: string - pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ structured_pattern: syntax: ^{PMID}|{DOI}|{URL}|{text}$ interpolated: true partial_match: true root_med_carbon: annotations: - Expected_value: carbon source name;measurement value - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: carbon source name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Source of organic carbon in the culture rooting medium; e.g. sucrose title: rooting medium carbon examples: @@ -11153,8 +11511,12 @@ slots: slot_uri: MIXS:0000577 root_med_macronutr: annotations: - Expected_value: macronutrient name;measurement value - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: macronutrient name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170 mg/L) title: rooting medium macronutrients @@ -11166,8 +11528,12 @@ slots: slot_uri: MIXS:0000578 root_med_micronutr: annotations: - Expected_value: micronutrient name;measurement value - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: micronutrient name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L) title: rooting medium micronutrients @@ -11188,8 +11554,12 @@ slots: range: float root_med_regl: annotations: - Expected_value: regulator name;measurement value - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: regulator name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA title: rooting medium regulators @@ -11207,11 +11577,15 @@ slots: range: string root_med_suppl: annotations: - Expected_value: supplement name;measurement value - Preferred_unit: milligram per liter + Expected_value: + tag: Expected_value + value: supplement name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Organic supplements of the culture rooting medium, such as vitamins, - amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid - (0.5 mg/L) + amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic + acid (0.5 mg/L) title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter @@ -11231,13 +11605,15 @@ slots: range: RouteTransmissionEnum salinity: annotations: - Preferred_unit: practical salinity unit, percentage + Preferred_unit: + tag: Preferred_unit + value: practical salinity unit, percentage description: The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations - compare the specific conductance of the sample to a salinity standard such as - seawater + compare the specific conductance of the sample to a salinity standard such + as seawater title: salinity examples: - value: 25 practical salinity unit @@ -11246,19 +11622,21 @@ slots: slot_uri: MIXS:0000183 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true salt_regm: annotations: - Preferred_unit: gram, microgram, mole per liter, gram per liter + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter description: Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, - treatment regimen including how many times the treatment was repeated, how long - each treatment lasted, and the start and end time of the entire treatment; can - include multiple salt regimens + treatment regimen including how many times the treatment was repeated, how + long each treatment lasted, and the start and end time of the entire treatment; + can include multiple salt regimens title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -11266,8 +11644,8 @@ slots: - regimen - salt slot_uri: MIXS:0000582 - multivalued: true range: string + multivalued: true samp_capt_status: description: Reason for the sample title: sample capture status @@ -11280,7 +11658,9 @@ slots: range: SampCaptStatusEnum samp_collect_device: annotations: - Expected_value: device name + Expected_value: + tag: Expected_value + value: device name description: The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094) @@ -11302,7 +11682,7 @@ slots: - sample slot_uri: MIXS:0001225 range: string - pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ structured_pattern: syntax: ^{PMID}|{DOI}|{URL}|{text}$ interpolated: true @@ -11332,7 +11712,9 @@ slots: range: SampDisStageEnum samp_floor: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: The floor of the building, where the sampling room is located title: sampling floor examples: @@ -11354,14 +11736,16 @@ slots: range: SampLocConditionEnum samp_loc_corr_rate: annotations: - Preferred_unit: millimeter per year - description: Metal corrosion rate is the speed of metal deterioration due to environmental - conditions. As environmental conditions change corrosion rates change accordingly. - Therefore, long term corrosion rates are generally more informative than short - term rates and for that reason they are preferred during reporting. In the case - of suspected MIC, corrosion rate measurements at the time of sampling might - provide insights into the involvement of certain microbial community members - in MIC as well as potential microbial interplays + Preferred_unit: + tag: Preferred_unit + value: millimeter per year + description: Metal corrosion rate is the speed of metal deterioration due to + environmental conditions. As environmental conditions change corrosion rates + change accordingly. Therefore, long term corrosion rates are generally more + informative than short term rates and for that reason they are preferred during + reporting. In the case of suspected MIC, corrosion rate measurements at the + time of sampling might provide insights into the involvement of certain microbial + community members in MIC as well as potential microbial interplays title: corrosion rate at sample location keywords: - location @@ -11377,8 +11761,8 @@ slots: partial_match: true samp_mat_process: description: A brief description of any processing applied to the sample during - or after retrieving the sample from environment, or a link to the relevant protocol(s) - performed + or after retrieving the sample from environment, or a link to the relevant + protocol(s) performed title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol @@ -11392,8 +11776,12 @@ slots: range: string samp_md: annotations: - Expected_value: measurement value;enumeration - Preferred_unit: meter + Expected_value: + tag: Expected_value + value: measurement value;enumeration + Preferred_unit: + tag: Preferred_unit + value: meter description: In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the @@ -11411,14 +11799,16 @@ slots: slot_uri: MIXS:0000413 samp_name: annotations: - Preferred_unit: '' + Preferred_unit: + tag: Preferred_unit + value: '' description: A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to - the original material collected or to any derived sub-samples. It can have any - format, but we suggest that you make it concise, unique and consistent within - your lab, and as informative as possible. INSDC requires every sample name from - a single Submitter to be unique. Use of a globally unique identifier for the - field source_mat_id is recommended in addition to sample_name + the original material collected or to any derived sub-samples. It can have + any format, but we suggest that you make it concise, unique and consistent + within your lab, and as informative as possible. INSDC requires every sample + name from a single Submitter to be unique. Use of a globally unique identifier + for the field source_mat_id is recommended in addition to sample_name title: sample name examples: - value: ISDsoil1 @@ -11431,8 +11821,8 @@ slots: required: true samp_pooling: description: Physical combination of several instances of like material, e.g. - RNA extracted from samples or dishes of cell cultures into one big aliquot of - cells. Please provide a short description of the samples that were pooled + RNA extracted from samples or dishes of cell cultures into one big aliquot + of cells. Please provide a short description of the samples that were pooled title: sample pooling examples: - value: 5uL of extracted genomic DNA from 5 leaves were pooled @@ -11440,11 +11830,13 @@ slots: - pooling - sample slot_uri: MIXS:0001153 - multivalued: true range: string + multivalued: true samp_preserv: annotations: - Preferred_unit: milliliter + Preferred_unit: + tag: Preferred_unit + value: milliliter description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml) title: preservative added to sample @@ -11452,14 +11844,16 @@ slots: - sample slot_uri: MIXS:0000463 range: string - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true samp_purpose: annotations: - Expected_value: enumeration or {text} + Expected_value: + tag: Expected_value + value: enumeration or {text} description: The reason that the sample was collected title: purpose of sampling examples: @@ -11469,8 +11863,8 @@ slots: string_serialization: '[active surveillance in response to an outbreak|active surveillance not initiated by an outbreak|clinical trial|cluster investigation|environmental assessment|farm sample|field trial|for cause|industry internal investigation|market - sample|passive surveillance|population based studies|research|research and development] - or {text}' + sample|passive surveillance|population based studies|research|research and + development] or {text}' slot_uri: MIXS:0001151 samp_rep_biol: description: Measurements of biologically distinct samples that show biological @@ -11483,7 +11877,7 @@ slots: slot_uri: MIXS:0001226 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -11499,7 +11893,7 @@ slots: slot_uri: MIXS:0001227 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -11527,14 +11921,14 @@ slots: slot_uri: MIXS:0000001 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true samp_sort_meth: - description: Method by which samples are sorted; open face filter collecting total - suspended particles, prefilter to remove particles larger than X micrometers + description: Method by which samples are sorted; open face filter collecting + total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor title: sample size sorting method @@ -11543,11 +11937,13 @@ slots: - sample - size slot_uri: MIXS:0000216 - multivalued: true range: string + multivalued: true samp_source_mat_cat: annotations: - Expected_value: GENEPIO:0001237 + Expected_value: + tag: Expected_value + value: GENEPIO:0001237 description: This is the scientific role or category that the subject organism or material has with respect to an investigation. This field accepts terms listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237 @@ -11563,7 +11959,9 @@ slots: slot_uri: MIXS:0001154 samp_stor_device: annotations: - Expected_value: NCIT:C4318 + Expected_value: + tag: Expected_value + value: NCIT:C4318 description: The container used to store the sample. This field accepts terms listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the proper descriptor is not listed please use text to describe the storage device @@ -11579,8 +11977,8 @@ slots: samp_stor_media: description: The liquid that is added to the sample collection device prior to sampling. If the sample is pre-hydrated, indicate the liquid media the sample - is pre-hydrated with for storage purposes. This field accepts terms listed under - microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). + is pre-hydrated with for storage purposes. This field accepts terms listed + under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the sample storage media title: sample storage media @@ -11591,14 +11989,14 @@ slots: - storage slot_uri: MIXS:0001229 range: string - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ structured_pattern: syntax: ^{text}|({termLabel} \[{termID}\])$ interpolated: true partial_match: true samp_store_dur: - description: Duration for which the sample was stored. Indicate the duration for - which the sample was stored written in ISO 8601 format + description: Duration for which the sample was stored. Indicate the duration + for which the sample was stored written in ISO 8601 format title: sample storage duration examples: - value: P1Y6M @@ -11616,8 +12014,11 @@ slots: partial_match: true samp_store_loc: annotations: - Expected_value: location name - description: Location at which sample was stored, usually name of a specific freezer/room + Expected_value: + tag: Expected_value + value: location name + description: Location at which sample was stored, usually name of a specific + freezer/room title: sample storage location examples: - value: Freezer no:5 @@ -11625,11 +12026,13 @@ slots: - location - sample - storage - range: string slot_uri: MIXS:0000755 + range: string samp_store_sol: annotations: - Expected_value: solution name + Expected_value: + tag: Expected_value + value: solution name description: Solution within which sample was stored, if any title: sample storage solution examples: @@ -11637,11 +12040,13 @@ slots: keywords: - sample - storage - range: string slot_uri: MIXS:0001317 + range: string samp_store_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Temperature at which sample was stored, e.g. -80 degree Celsius title: sample storage temperature examples: @@ -11653,7 +12058,7 @@ slots: slot_uri: MIXS:0000110 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -11682,8 +12087,8 @@ slots: - sample - surface slot_uri: MIXS:0001256 - multivalued: true range: SampSurfMoistureEnum + multivalued: true samp_taxon_id: description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or @@ -11701,15 +12106,19 @@ slots: slot_uri: MIXS:0001320 range: string required: true - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$ + pattern: ^.* \[NCBITaxon:\d+\]$ structured_pattern: syntax: ^{text} \[{NCBItaxon_id}\]$ interpolated: true partial_match: true samp_time_out: annotations: - Expected_value: time - Preferred_unit: hour + Expected_value: + tag: Expected_value + value: time + Preferred_unit: + tag: Preferred_unit + value: hour description: The recent and long term history of outside sampling title: sampling time outside keywords: @@ -11718,8 +12127,12 @@ slots: slot_uri: MIXS:0000196 samp_transport_cond: annotations: - Expected_value: measurement value;measurement value - Preferred_unit: days;degree Celsius + Expected_value: + tag: Expected_value + value: measurement value;measurement value + Preferred_unit: + tag: Preferred_unit + value: days;degree Celsius description: Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 C) title: sample transport conditions @@ -11744,7 +12157,9 @@ slots: range: SampTransportContEnum samp_transport_dur: annotations: - Preferred_unit: days + Preferred_unit: + tag: Preferred_unit + value: days description: The duration of time from when the sample was collected until processed. Indicate the duration for which the sample was stored written in ISO 8601 format title: sample transport duration @@ -11764,8 +12179,12 @@ slots: partial_match: true samp_transport_temp: annotations: - Expected_value: text or measurement value - Preferred_unit: degree Celsius + Expected_value: + tag: Expected_value + value: text or measurement value + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Temperature at which sample was transported, e.g. -20 or 4 degree Celsius title: sample transport temperature @@ -11779,8 +12198,12 @@ slots: slot_uri: MIXS:0001232 samp_tvdss: annotations: - Expected_value: measurement value or measurement value range - Preferred_unit: meter + Expected_value: + tag: Expected_value + value: measurement value or measurement value range + Preferred_unit: + tag: Preferred_unit + value: meter description: Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m @@ -11814,7 +12237,9 @@ slots: partial_match: true samp_vol_we_dna_ext: annotations: - Preferred_unit: milliliter, gram, milligram, square centimeter + Preferred_unit: + tag: Preferred_unit + value: milliliter, gram, milligram, square centimeter description: 'Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)' @@ -11831,7 +12256,7 @@ slots: slot_uri: MIXS:0000111 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -11856,17 +12281,19 @@ slots: recommended: true saturates_pc: annotations: - Preferred_unit: percent + Preferred_unit: + tag: Preferred_unit + value: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most - popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: - https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: saturates wt% slot_uri: MIXS:0000131 range: string recommended: true - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true @@ -11885,7 +12312,9 @@ slots: range: ScLysisApproachEnum sc_lysis_method: annotations: - Expected_value: kit, protocol name + Expected_value: + tag: Expected_value + value: kit, protocol name description: Name of the kit or standard protocol used for cell(s) or particle(s) lysis title: single cell or viral particle lysis kit protocol @@ -11898,15 +12327,17 @@ slots: - particle - protocol - single - range: string slot_uri: MIXS:0000054 + range: string season: annotations: - Expected_value: autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], winter - [NCIT:C94730] - description: The season when sampling occurred. Any of the four periods into which - the year is divided by the equinoxes and solstices. This field accepts terms - listed under season (http://purl.obolibrary.org/obo/NCIT_C94729) + Expected_value: + tag: Expected_value + value: autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], + winter [NCIT:C94730] + description: The season when sampling occurred. Any of the four periods into + which the year is divided by the equinoxes and solstices. This field accepts + terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729) title: season comments: - autumn [NCIT:C94733] does not match ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$ @@ -11931,8 +12362,8 @@ slots: - environment - season slot_uri: MIXS:0001068 - multivalued: true range: string + multivalued: true season_humidity: description: Average humidity of the region throughout the growing season title: mean seasonal humidity @@ -11947,14 +12378,16 @@ slots: slot_uri: MIXS:0001148 range: float pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true season_precpt: annotations: - Preferred_unit: millimeter + Preferred_unit: + tag: Preferred_unit + value: millimeter description: The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps title: mean seasonal precipitation @@ -11966,14 +12399,16 @@ slots: slot_uri: MIXS:0000645 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true season_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Mean seasonal temperature title: mean seasonal temperature examples: @@ -11985,7 +12420,7 @@ slots: slot_uri: MIXS:0000643 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -12002,15 +12437,17 @@ slots: range: SeasonUseEnum secondary_treatment: annotations: - Expected_value: secondary treatment type + Expected_value: + tag: Expected_value + value: secondary treatment type description: The process for substantially degrading the biological content of the sewage title: secondary treatment keywords: - secondary - treatment - range: string slot_uri: MIXS:0000351 + range: string sediment_type: description: Information about the sediment type based on major constituents title: sediment type @@ -12034,14 +12471,16 @@ slots: slot_uri: MIXS:0000050 range: string required: true - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ structured_pattern: syntax: ^{text}|({termLabel} \[{termID}\])$ interpolated: true partial_match: true seq_quality_check: annotations: - Expected_value: none or manually edited + Expected_value: + tag: Expected_value + value: none or manually edited description: Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA @@ -12057,7 +12496,9 @@ slots: range: SeqQualityCheckEnum sequencing_kit: annotations: - Expected_value: name of sequencing kit used + Expected_value: + tag: Expected_value + value: name of sequencing kit used description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved chemistry, cluster density and read length as well as improve quality (Q) scores. Reagent components are encoded to interact with the sequencing system to validate @@ -12068,8 +12509,8 @@ slots: - value: NextSeq 500/550 High Output Kit v2.5 (75 Cycles) keywords: - kit - range: string slot_uri: MIXS:0001155 + range: string sequencing_location: description: The location the sequencing run was performed. Indicate the name of the lab or core facility where samples were sequenced @@ -12082,15 +12523,15 @@ slots: range: string serovar_or_serotype: description: A characterization of a cell or microorganism based on the antigenic - properties of the molecules on its surface. Indicate the name of a serovar or - serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + properties of the molecules on its surface. Indicate the name of a serovar + or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy title: serovar or serotype examples: - value: Escherichia coli strain O157:H7 [NCIT:C86883] slot_uri: MIXS:0001157 - multivalued: true range: string + multivalued: true pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ structured_pattern: syntax: ^({termLabel} \[{termID}\])|{integer}$ @@ -12098,20 +12539,24 @@ slots: partial_match: true sewage_type: annotations: - Expected_value: sewage type name + Expected_value: + tag: Expected_value + value: sewage type name description: Type of wastewater treatment plant as municipial or industrial title: sewage type keywords: - type - range: string slot_uri: MIXS:0000215 + range: string sexual_act: annotations: - Expected_value: partner sex;frequency + Expected_value: + tag: Expected_value + value: partner sex;frequency description: Current sexual partner and frequency of sex title: sexual activity - range: string slot_uri: MIXS:0000285 + range: string shad_dev_water_mold: description: Signs of the presence of mold or mildew on the shading device title: shading device signs of water/mold @@ -12143,14 +12588,16 @@ slots: range: ShadingDeviceLocEnum shading_device_mat: annotations: - Expected_value: material name + Expected_value: + tag: Expected_value + value: material name description: The material the shading device is composed of title: shading device material keywords: - device - material - range: string slot_uri: MIXS:0000245 + range: string shading_device_type: description: The type of shading device title: shading device type @@ -12164,7 +12611,9 @@ slots: range: ShadingDeviceTypeEnum sieving: annotations: - Expected_value: design name and/or size;amount + Expected_value: + tag: Expected_value + value: design name and/or size;amount description: Collection design of pooled samples and/or sieve size and amount of sample sieved title: sieving @@ -12172,7 +12621,9 @@ slots: slot_uri: MIXS:0000322 silicate: annotations: - Preferred_unit: micromole per liter + Preferred_unit: + tag: Preferred_unit + value: micromole per liter description: Concentration of silicate title: silicate examples: @@ -12180,14 +12631,14 @@ slots: slot_uri: MIXS:0000184 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sim_search_meth: - description: Tool used to compare ORFs with database, along with version and cutoffs - used + description: Tool used to compare ORFs with database, along with version and + cutoffs used title: similarity search method examples: - value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score @@ -12204,7 +12655,9 @@ slots: partial_match: true size_frac: annotations: - Expected_value: filter size value range + Expected_value: + tag: Expected_value + value: filter size value range description: Filtering pore size used in sample preparation title: size fraction selected examples: @@ -12218,9 +12671,11 @@ slots: slot_uri: MIXS:0000017 size_frac_low: annotations: - Preferred_unit: micrometer + Preferred_unit: + tag: Preferred_unit + value: micrometer description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample. - Materials larger than the size threshold are excluded from the sample + Materials smaller than the size threshold are excluded from the sample title: size-fraction lower threshold examples: - value: 0.2 micrometer @@ -12229,16 +12684,18 @@ slots: slot_uri: MIXS:0000735 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true size_frac_up: annotations: - Preferred_unit: micrometer + Preferred_unit: + tag: Preferred_unit + value: micrometer description: Mesh or pore size of the device used to retain the sample. Materials - smaller than the size threshold are excluded from the sample + larger than the size threshold are excluded from the sample. title: size-fraction upper threshold examples: - value: 20 micrometer @@ -12247,49 +12704,55 @@ slots: slot_uri: MIXS:0000736 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true slope_aspect: annotations: - Preferred_unit: degree + Preferred_unit: + tag: Preferred_unit + value: degree description: The direction a slope faces. While looking down a slope use a compass - to record the direction you are facing (direction or degrees); e.g., nw or 315 - degrees. This measure provides an indication of sun and wind exposure that will - influence soil temperature and evapotranspiration + to record the direction you are facing (direction or degrees); e.g., nw or + 315 degrees. This measure provides an indication of sun and wind exposure that + will influence soil temperature and evapotranspiration title: slope aspect keywords: - slope slot_uri: MIXS:0000647 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true slope_gradient: annotations: - Preferred_unit: percentage - description: Commonly called 'slope'. The angle between ground surface and a horizontal - line (in percent). This is the direction that overland water would flow. This - measure is usually taken with a hand level meter or clinometer + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Commonly called 'slope'. The angle between ground surface and a + horizontal line (in percent). This is the direction that overland water would + flow. This measure is usually taken with a hand level meter or clinometer title: slope gradient keywords: - slope slot_uri: MIXS:0000646 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sludge_retent_time: annotations: - Preferred_unit: hours + Preferred_unit: + tag: Preferred_unit + value: hours description: The time activated sludge remains in reactor title: sludge retention time keywords: @@ -12297,7 +12760,7 @@ slots: slot_uri: MIXS:0000669 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -12311,7 +12774,9 @@ slots: range: boolean sodium: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Sodium concentration in the sample title: sodium examples: @@ -12319,14 +12784,16 @@ slots: slot_uri: MIXS:0000428 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true soil_conductivity: annotations: - Preferred_unit: milliSiemens per centimeter + Preferred_unit: + tag: Preferred_unit + value: milliSiemens per centimeter title: soil conductivity examples: - value: 10 milliSiemens per centimeter @@ -12335,14 +12802,16 @@ slots: slot_uri: MIXS:0001158 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true soil_cover: annotations: - Expected_value: subclass of 'environmental material', http://purl.obolibrary.org/obo/ENVO_00010483 + Expected_value: + tag: Expected_value + value: subclass of 'environmental material', http://purl.obolibrary.org/obo/ENVO_00010483 description: Material covering the sampled soil. This field accepts terms under ENVO:00010483, environmental material title: soil cover @@ -12375,8 +12844,12 @@ slots: range: float soil_porosity: annotations: - Expected_value: percent porosity - Preferred_unit: percentage + Expected_value: + tag: Expected_value + value: percent porosity + Preferred_unit: + tag: Preferred_unit + value: percentage description: Porosity of soil or deposited sediment is volume of voids divided by the total volume of sample title: soil sediment porosity @@ -12390,7 +12863,9 @@ slots: slot_uri: MIXS:0001162 soil_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Temperature of soil at the time of sampling title: soil temperature examples: @@ -12401,7 +12876,7 @@ slots: slot_uri: MIXS:0001163 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -12418,15 +12893,15 @@ slots: slot_uri: MIXS:0000335 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true soil_texture_class: - description: One of the 12 soil texture classes use to describe soil texture based - on the relative proportion of different grain sizes of mineral particles [sand - (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil + description: One of the 12 soil texture classes use to describe soil texture + based on the relative proportion of different grain sizes of mineral particles + [sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil title: soil texture classification examples: - value: silty clay loam @@ -12454,10 +12929,12 @@ slots: partial_match: true soil_type: annotations: - Expected_value: ENVO:00001998 + Expected_value: + tag: Expected_value + value: ENVO:00001998 description: Description of the soil type or classification. This field accepts - terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms - can be separated by pipes + terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple + terms can be separated by pipes title: soil type examples: - value: plinthosol [ENVO:00002250] @@ -12484,26 +12961,32 @@ slots: partial_match: true solar_irradiance: annotations: - Preferred_unit: kilowatts per square meter per day, ergs per square centimeter per - second - description: The amount of solar energy that arrives at a specific area of a surface - during a specific time interval + Preferred_unit: + tag: Preferred_unit + value: kilowatts per square meter per day, ergs per square centimeter per + second + description: The amount of solar energy that arrives at a specific area of a + surface during a specific time interval title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day slot_uri: MIXS:0000112 - multivalued: true range: string + multivalued: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true soluble_inorg_mat: annotations: - Expected_value: soluble inorganic material name;measurement value - Preferred_unit: gram, microgram, mole per liter, gram per liter, parts per million + Expected_value: + tag: Expected_value + value: soluble inorganic material name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter, parts per million description: Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc title: soluble inorganic material @@ -12516,10 +12999,14 @@ slots: multivalued: true soluble_org_mat: annotations: - Expected_value: soluble organic material name;measurement value - Preferred_unit: gram, microgram, mole per liter, gram per liter, parts per million - description: Concentration of substances such as urea, fruit sugars, soluble proteins, - drugs, pharmaceuticals, etc + Expected_value: + tag: Expected_value + value: soluble organic material name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter, parts per million + description: Concentration of substances such as urea, fruit sugars, soluble + proteins, drugs, pharmaceuticals, etc title: soluble organic material keywords: - material @@ -12530,7 +13017,9 @@ slots: multivalued: true soluble_react_phosp: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: Concentration of soluble reactive phosphorus title: soluble reactive phosphorus examples: @@ -12541,14 +13030,16 @@ slots: slot_uri: MIXS:0000738 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sop: annotations: - Expected_value: reference to SOP + Expected_value: + tag: Expected_value + value: reference to SOP description: Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences title: relevant standard operating procedures @@ -12572,7 +13063,9 @@ slots: range: SortTechEnum source_mat_id: annotations: - Expected_value: 'for cultures of microorganisms: identifiers for two culture collections; + Expected_value: + tag: Expected_value + value: 'for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer' description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular @@ -12580,12 +13073,12 @@ slots: subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as - the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id - may both contain 'UAM:Herps:14' , referring to both the specimen voucher and - sampled tissue with the same identifier. However, the /culture_collection qualifier - may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id - would refer to an identifier from some derived culture from which the nucleic - acids were extracted (e.g. xatc123 or ark:/2154/R2) + the source_mat_id field. For instance, the /specimen_voucher qualifier and + source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen + voucher and sampled tissue with the same identifier. However, the /culture_collection + qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while + source_mat_id would refer to an identifier from some derived culture from which + the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2) title: source material identifiers examples: - value: MPI012345 @@ -12595,12 +13088,14 @@ slots: - identifier - material - source - range: string slot_uri: MIXS:0000026 + range: string multivalued: true source_uvig: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Type of dataset from which the UViG was obtained title: source of UViGs examples: @@ -12612,8 +13107,8 @@ slots: string_serialization: '[metagenome (not viral targeted)|viral fraction metagenome (virome)|sequence-targeted metagenome|metatranscriptome (not viral targeted)|viral fraction RNA metagenome (RNA virome)|sequence-targeted RNA metagenome|microbial - single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate microbial - genome|other]' + single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate + microbial genome|other]' slot_uri: MIXS:0000035 space_typ_state: description: Customary or normal state of the space @@ -12624,17 +13119,17 @@ slots: range: SpaceTypStateEnum required: true spec_intended_cons: - description: Food consumer type, human or animal, for which the food product is - produced and marketed. This field accepts terms listed under food consumer group - (http://purl.obolibrary.org/obo/FOODON_03510136) + description: Food consumer type, human or animal, for which the food product + is produced and marketed. This field accepts terms listed under food consumer + group (http://purl.obolibrary.org/obo/FOODON_03510136) title: specific intended consumer examples: - value: senior as food consumer [FOODON:03510254] keywords: - consumer slot_uri: MIXS:0001234 - multivalued: true range: string + multivalued: true pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ structured_pattern: syntax: ^{termLabel} \[{termID}\]$ @@ -12642,7 +13137,9 @@ slots: partial_match: true special_diet: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Specification of special diet; can include multiple special diets title: special diet examples: @@ -12662,7 +13159,9 @@ slots: range: SpecificEnum specific_host: annotations: - Expected_value: host scientific name, taxonomy ID + Expected_value: + tag: Expected_value + value: host scientific name, taxonomy ID description: Report the host's taxonomic name and/or NCBI taxonomy ID title: host scientific name examples: @@ -12676,10 +13175,12 @@ slots: slot_uri: MIXS:0000029 specific_humidity: annotations: - Preferred_unit: gram of air, kilogram of air + Preferred_unit: + tag: Preferred_unit + value: gram of air, kilogram of air description: The mass of water vapour in a unit mass of moist air, usually expressed - as grams of vapour per kilogram of air, or, in air conditioning, as grains per - pound + as grams of vapour per kilogram of air, or, in air conditioning, as grains + per pound title: specific humidity examples: - value: 15 per kilogram of air @@ -12688,14 +13189,16 @@ slots: slot_uri: MIXS:0000214 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true spikein_AMR: annotations: - Expected_value: measurement value ARO:3004299 + Expected_value: + tag: Expected_value + value: measurement value ARO:3004299 description: Qualitative description of a microbial response to antimicrobial agents. Bacteria may be susceptible or resistant to a broad range of antibiotic drugs or drug classes, with several intermediate states or phases. This field @@ -12711,7 +13214,9 @@ slots: multivalued: true spikein_antibiotic: annotations: - Expected_value: drug name; concentration + Expected_value: + tag: Expected_value + value: drug name; concentration description: Antimicrobials used in research study to assess effects of exposure on microbiome of a specific site. Please list antimicrobial, common name and/or class and concentration used for spike-in @@ -12725,9 +13230,13 @@ slots: multivalued: true spikein_count: annotations: - Expected_value: organism name;measurement value;enumeration - Preferred_unit: colony forming units per milliliter; colony forming units per gram - of dry weight + Expected_value: + tag: Expected_value + value: organism name;measurement value;enumeration + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight description: 'Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should @@ -12743,10 +13252,10 @@ slots: slot_uri: MIXS:0001335 spikein_growth_med: description: A liquid or gel containing nutrients, salts, and other factors formulated - to support the growth of microorganisms, cells, or plants (National Cancer Institute - Thesaurus). A growth medium is a culture medium which has the disposition to - encourage growth of particular bacteria to the exclusion of others in the same - growth environment. In this case, list the culture medium used to propagate + to support the growth of microorganisms, cells, or plants (National Cancer + Institute Thesaurus). A growth medium is a culture medium which has the disposition + to encourage growth of particular bacteria to the exclusion of others in the + same growth environment. In this case, list the culture medium used to propagate the spike-in bacteria during preparation of spike-in inoculum. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the spike @@ -12758,16 +13267,18 @@ slots: - growth - spike slot_uri: MIXS:0001169 - multivalued: true range: string - pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + multivalued: true + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ structured_pattern: syntax: ^{text}|({termLabel} \[{termID}\])$ interpolated: true partial_match: true spikein_metal: annotations: - Expected_value: heavy metal name or chemical symbol; concentration + Expected_value: + tag: Expected_value + value: heavy metal name or chemical symbol; concentration description: Heavy metals used in research study to assess effects of exposure on microbiome of a specific site. Please list heavy metals and concentration used for spike-in @@ -12782,8 +13293,8 @@ slots: multivalued: true spikein_org: description: Taxonomic information about the spike-in organism(s). This field - accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This - field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes title: spike in organism examples: @@ -12792,8 +13303,8 @@ slots: - organism - spike slot_uri: MIXS:0001167 - multivalued: true range: string + multivalued: true pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ structured_pattern: syntax: ^({termLabel} \[{termID}\])|{integer}$ @@ -12801,7 +13312,9 @@ slots: partial_match: true spikein_serovar: annotations: - Expected_value: NCIT:C14250 or antigenic formula or serovar name + Expected_value: + tag: Expected_value + value: NCIT:C14250 or antigenic formula or serovar name description: Taxonomic information about the spike-in organism(s) at the serovar or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. @@ -12816,7 +13329,9 @@ slots: multivalued: true spikein_strain: annotations: - Expected_value: NCIT:C14250 or NCBI taxid or text + Expected_value: + tag: Expected_value + value: NCIT:C14250 or NCBI taxid or text description: Taxonomic information about the spike-in organism(s) at the strain level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. @@ -12880,8 +13395,8 @@ slots: standing_water_regm: description: Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including - how many times the treatment was repeated, how long each treatment lasted, and - the start and end time of the entire treatment; can include multiple regimens + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple regimens title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -12889,11 +13404,13 @@ slots: - regimen - water slot_uri: MIXS:0001069 - multivalued: true range: string + multivalued: true ster_meth_samp_room: annotations: - Expected_value: ENVO:01001026 + Expected_value: + tag: Expected_value + value: ENVO:01001026 description: The method used to sterilize the sampling room. This field accepts terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026). If the proper descriptor is not listed, please use text to describe the sampling @@ -12909,7 +13426,9 @@ slots: multivalued: true store_cond: annotations: - Expected_value: storage condition type;duration + Expected_value: + tag: Expected_value + value: storage condition type;duration description: Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other) title: storage conditions @@ -12922,8 +13441,10 @@ slots: slot_uri: MIXS:0000327 study_complt_stat: annotations: - Expected_value: YES or NO due to (1)adverse event (2) non-compliance (3) lost to follow - up (4)other-specify + Expected_value: + tag: Expected_value + value: YES or NO due to (1)adverse event (2) non-compliance (3) lost to follow + up (4)other-specify description: Specification of study completion status, if no the reason should be specified title: study completion status @@ -12936,13 +13457,15 @@ slots: slot_uri: MIXS:0000898 study_design: annotations: - Expected_value: OBI:0500000 + Expected_value: + tag: Expected_value + value: OBI:0500000 description: A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution. This field accepts terms under study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor - is not listed please use text to describe the study design. Multiple terms can - be separated by pipes + is not listed please use text to describe the study design. Multiple terms + can be separated by pipes title: study design examples: - value: in vitro design [OBI:0001285] @@ -12951,9 +13474,11 @@ slots: multivalued: true study_inc_dur: annotations: - Preferred_unit: hours or days - description: Sample incubation duration if unpublished or unvalidated method is - used. Indicate the timepoint written in ISO 8601 format + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: Sample incubation duration if unpublished or unvalidated method + is used. Indicate the timepoint written in ISO 8601 format title: study incubation duration examples: - value: PT24H @@ -12970,7 +13495,9 @@ slots: partial_match: true study_inc_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Sample incubation temperature if unpublished or unvalidated method is used title: study incubation temperature @@ -12982,14 +13509,16 @@ slots: slot_uri: MIXS:0001238 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true study_timecourse: annotations: - Preferred_unit: dpi + Preferred_unit: + tag: Preferred_unit + value: dpi description: For time-course research studies involving samples of the food commodity, indicate the total duration of the time-course study title: time-course duration @@ -13002,20 +13531,22 @@ slots: slot_uri: MIXS:0001239 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true study_tmnt: annotations: - Expected_value: MCO:0000866 + Expected_value: + tag: Expected_value + value: MCO:0000866 description: A process in which the act is intended to modify or alter some other material entity. From the study design, each treatment is comprised of one level of one or multiple factors. This field accepts terms listed under treatment (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not - listed please use text to describe the study treatment. Multiple terms can be - separated by one or more pipes + listed please use text to describe the study treatment. Multiple terms can + be separated by one or more pipes title: study treatment examples: - value: Factor A|spike-in|levels high, medium, low @@ -13026,8 +13557,10 @@ slots: multivalued: true subspecf_gen_lin: annotations: - Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, - e.g. serovar, biotype, ecotype, variety, cultivar + Expected_value: + tag: Expected_value + value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, + e.g. serovar, biotype, ecotype, variety, cultivar description: Information about the genetic distinctness of the sequenced organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not @@ -13051,11 +13584,13 @@ slots: keywords: - type slot_uri: MIXS:0000767 - multivalued: true range: SubstructureTypeEnum + multivalued: true sulfate: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: Concentration of sulfate in the sample title: sulfate examples: @@ -13065,14 +13600,16 @@ slots: slot_uri: MIXS:0000423 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sulfate_fw: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Original sulfate concentration in the hydrocarbon resource title: sulfate in formation water keywords: @@ -13081,14 +13618,16 @@ slots: slot_uri: MIXS:0000407 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sulfide: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: Concentration of sulfide in the sample title: sulfide examples: @@ -13098,7 +13637,7 @@ slots: slot_uri: MIXS:0000424 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13109,12 +13648,14 @@ slots: examples: - value: radon slot_uri: MIXS:0000759 - multivalued: true range: SurfAirContEnum recommended: true + multivalued: true surf_humidity: annotations: - Preferred_unit: percentage + Preferred_unit: + tag: Preferred_unit + value: percentage description: 'Surfaces: water activity as a function of air and material moisture' title: surface humidity comments: @@ -13128,7 +13669,7 @@ slots: range: float recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13145,7 +13686,9 @@ slots: range: SurfMaterialEnum surf_moisture: annotations: - Preferred_unit: parts per million, gram per cubic meter, gram per square meter + Preferred_unit: + tag: Preferred_unit + value: parts per million, gram per cubic meter, gram per square meter description: Water held on a surface title: surface moisture examples: @@ -13157,7 +13700,7 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13176,7 +13719,9 @@ slots: recommended: true surf_temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Temperature of the surface at the time of sampling title: surface temperature examples: @@ -13188,14 +13733,16 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true suspend_part_matter: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Concentration of suspended particulate matter title: suspended particulate matter examples: @@ -13207,16 +13754,20 @@ slots: slot_uri: MIXS:0000741 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true suspend_solids: annotations: - Expected_value: suspended solid name;measurement value - Preferred_unit: gram, microgram, milligram per liter, mole per liter, gram per liter, - part per million + Expected_value: + tag: Expected_value + value: suspended solid name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, milligram per liter, mole per liter, gram per liter, + part per million description: Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances title: suspended solids @@ -13228,7 +13779,9 @@ slots: multivalued: true sym_life_cycle_type: annotations: - Expected_value: type of life cycle of the symbiotic organism (host of the samples) + Expected_value: + tag: Expected_value + value: type of life cycle of the symbiotic organism (host of the samples) description: Type of life cycle of the symbiotic host species (the thing being sampled). Simple life cycles occur within a single host, complex ones within multiple different hosts over the course of their normal life cycle @@ -13259,7 +13812,9 @@ slots: recommended: true tan: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: 'Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude @@ -13272,7 +13827,7 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13331,7 +13886,9 @@ slots: range: TaxIdentEnum temp: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: Temperature of the sample at the time of sampling title: temperature examples: @@ -13343,14 +13900,16 @@ slots: slot_uri: MIXS:0000113 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true temp_out: annotations: - Preferred_unit: degree Celsius + Preferred_unit: + tag: Preferred_unit + value: degree Celsius description: The recorded temperature value at sampling time outside title: temperature outside house examples: @@ -13361,21 +13920,23 @@ slots: slot_uri: MIXS:0000197 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tertiary_treatment: annotations: - Expected_value: tertiary treatment type + Expected_value: + tag: Expected_value + value: tertiary treatment type description: The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment title: tertiary treatment keywords: - treatment - range: string slot_uri: MIXS:0000352 + range: string tidal_stage: description: Stage of tide title: tidal stage @@ -13391,8 +13952,8 @@ slots: keywords: - history slot_uri: MIXS:0001081 - multivalued: true range: TillageEnum + multivalued: true time_last_toothbrush: description: Specification of the time since last toothbrushing title: time since last toothbrushing @@ -13426,7 +13987,9 @@ slots: partial_match: true timepoint: annotations: - Preferred_unit: hours or days + Preferred_unit: + tag: Preferred_unit + value: hours or days description: Time point at which a sample or observation is made or taken from a biomaterial as measured from some reference point. Indicate the timepoint written in ISO 8601 format @@ -13452,21 +14015,23 @@ slots: - growth slot_uri: MIXS:0001070 range: string - pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ structured_pattern: syntax: ^{PMID}|{DOI}|{URL}|{text}$ interpolated: true partial_match: true toluene: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of toluene in the sample title: toluene slot_uri: MIXS:0000154 range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13480,14 +14045,16 @@ slots: slot_uri: MIXS:0000525 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_depth_water_col: annotations: - Preferred_unit: meter + Preferred_unit: + tag: Preferred_unit + value: meter description: Measurement of total depth of water column title: total depth of water column examples: @@ -13499,14 +14066,16 @@ slots: slot_uri: MIXS:0000634 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_diss_nitro: annotations: - Preferred_unit: microgram per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter description: 'Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen' title: total dissolved nitrogen @@ -13519,14 +14088,16 @@ slots: slot_uri: MIXS:0000744 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_inorg_nitro: annotations: - Preferred_unit: microgram per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter description: Total inorganic nitrogen content title: total inorganic nitrogen examples: @@ -13538,14 +14109,16 @@ slots: slot_uri: MIXS:0000745 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_iron: annotations: - Preferred_unit: milligram per liter, milligram per kilogram + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, milligram per kilogram description: Concentration of total iron in the sample title: total iron keywords: @@ -13554,14 +14127,16 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_nitro: annotations: - Preferred_unit: microgram per liter, micromole per liter, milligram per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter, milligram per liter description: 'Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen' @@ -13575,7 +14150,7 @@ slots: slot_uri: MIXS:0000102 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13609,7 +14184,7 @@ slots: slot_uri: MIXS:0000530 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13633,7 +14208,9 @@ slots: partial_match: true tot_org_carb: annotations: - Preferred_unit: gram Carbon per kilogram sample material + Preferred_unit: + tag: Preferred_unit + value: gram Carbon per kilogram sample material description: Total organic carbon content title: total organic carbon examples: @@ -13645,14 +14222,16 @@ slots: slot_uri: MIXS:0000533 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_part_carb: annotations: - Preferred_unit: microgram per liter, micromole per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter description: Total particulate carbon content title: total particulate carbon examples: @@ -13665,14 +14244,16 @@ slots: slot_uri: MIXS:0000747 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_phosp: annotations: - Preferred_unit: micromole per liter, milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million description: 'Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus' title: total phosphorus @@ -13684,14 +14265,16 @@ slots: slot_uri: MIXS:0000117 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_phosphate: annotations: - Preferred_unit: microgram per liter, micromole per liter + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter description: Total amount or concentration of phosphate title: total phosphate keywords: @@ -13700,14 +14283,16 @@ slots: slot_uri: MIXS:0000689 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_sulfur: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of total sulfur in the sample title: total sulfur keywords: @@ -13717,7 +14302,7 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13754,14 +14339,16 @@ slots: range: TrainStopLocEnum travel_out_six_month: annotations: - Expected_value: country name + Expected_value: + tag: Expected_value + value: country name description: Specification of the countries travelled in the last six months; can include multiple travels title: travel outside the country in last six months keywords: - months - range: string slot_uri: MIXS:0000268 + range: string multivalued: true trna_ext_software: description: Tools used for tRNA identification @@ -13781,7 +14368,9 @@ slots: partial_match: true trnas: annotations: - Expected_value: value from 0-21 + Expected_value: + tag: Expected_value + value: value from 0-21 description: The total number of tRNAs identified from the SAG or MAG title: number of standard tRNAs extracted examples: @@ -13805,22 +14394,24 @@ slots: slot_uri: MIXS:0000032 range: TrophicLevelEnum turbidity: - description: Measure of the amount of cloudiness or haziness in water caused by - individual particles + description: Measure of the amount of cloudiness or haziness in water caused + by individual particles title: turbidity examples: - value: 0.3 nephelometric turbidity units slot_uri: MIXS:0000191 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tvdss_of_hcr_press: annotations: - Preferred_unit: meter + Preferred_unit: + tag: Preferred_unit + value: meter description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m) title: depth (TVDSS) of hydrocarbon resource pressure @@ -13832,14 +14423,16 @@ slots: slot_uri: MIXS:0000397 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tvdss_of_hcr_temp: annotations: - Preferred_unit: meter + Preferred_unit: + tag: Preferred_unit + value: meter description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m) title: depth (TVDSS) of hydrocarbon resource temperature @@ -13851,7 +14444,7 @@ slots: slot_uri: MIXS:0000394 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -13898,7 +14491,9 @@ slots: range: UrineCollectMethEnum urobiom_sex: annotations: - Expected_value: sex of the symbiotic organism (host of the samples); enumeration + Expected_value: + tag: Expected_value + value: sex of the symbiotic organism (host of the samples); enumeration description: Physical sex of the host title: host sex keywords: @@ -13915,8 +14510,8 @@ slots: keywords: - disorder slot_uri: MIXS:0000289 - multivalued: true range: string + multivalued: true urogenit_tract_disor: description: History of urogenital tract disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, @@ -13925,11 +14520,13 @@ slots: keywords: - disorder slot_uri: MIXS:0000278 - multivalued: true range: string + multivalued: true ventilation_rate: annotations: - Preferred_unit: cubic meter per minute, liters per second + Preferred_unit: + tag: Preferred_unit + value: cubic meter per minute, liters per second description: Ventilation rate of the system in the sampled premises title: ventilation rate examples: @@ -13939,40 +14536,46 @@ slots: slot_uri: MIXS:0000114 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ventilation_type: annotations: - Expected_value: ventilation type name + Expected_value: + tag: Expected_value + value: ventilation type name description: Ventilation system used in the sampled premises title: ventilation type examples: - value: Operable windows keywords: - type - range: string slot_uri: MIXS:0000756 + range: string multivalued: true vfa: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of Volatile Fatty Acids in the sample title: volatile fatty acids slot_uri: MIXS:0000152 range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true vfa_fw: annotations: - Preferred_unit: milligram per liter + Preferred_unit: + tag: Preferred_unit + value: milligram per liter description: Original volatile fatty acid concentration in the hydrocarbon resource title: vfa in formation water keywords: @@ -13980,14 +14583,16 @@ slots: slot_uri: MIXS:0000408 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true vir_ident_software: annotations: - Expected_value: software name, version and relevant parameters + Expected_value: + tag: Expected_value + value: software name, version and relevant parameters description: Tool(s) used for the identification of UViG as a viral genome, software or protocol name including version number, parameters, and cutoffs used title: viral identification software @@ -14005,13 +14610,17 @@ slots: title: virus enrichment approach examples: - value: filtration - description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse - value: FeCl Precipitation - description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse - value: ultracentrifugation - description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse - value: DNAse - description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse in_subset: - nucleic acid sequence source keywords: @@ -14020,7 +14629,9 @@ slots: range: VirusEnrichApprEnum vis_media: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: The building visual media title: visual media examples: @@ -14030,17 +14641,25 @@ slots: slot_uri: MIXS:0000840 viscosity: annotations: - Expected_value: measurement value;measurement value - Preferred_unit: cP at degree Celsius - description: A measure of oil's resistance to gradual deformation by shear stress or tensile - stress (e.g. 3.5 cp; 100 C) + Expected_value: + tag: Expected_value + value: measurement value;measurement value + Preferred_unit: + tag: Preferred_unit + value: cP at degree Celsius + description: A measure of oil's resistance to gradual deformation by shear + stress or tensile stress (e.g. 3.5 cp; 100 C) title: viscosity string_serialization: '{float} {unit};{float} {unit}' slot_uri: MIXS:0000126 volatile_org_comp: annotations: - Expected_value: volatile organic compound name;measurement value - Preferred_unit: microgram per cubic meter, parts per million, nanogram per liter + Expected_value: + tag: Expected_value + value: volatile organic compound name;measurement value + Preferred_unit: + tag: Preferred_unit + value: microgram per cubic meter, parts per million, nanogram per liter description: Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound @@ -14054,7 +14673,9 @@ slots: multivalued: true wall_area: annotations: - Preferred_unit: square meter + Preferred_unit: + tag: Preferred_unit + value: square meter description: The total area of the sampled room's walls title: wall area keywords: @@ -14063,7 +14684,7 @@ slots: slot_uri: MIXS:0000198 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -14091,7 +14712,9 @@ slots: range: WallFinishMatEnum wall_height: annotations: - Preferred_unit: centimeter + Preferred_unit: + tag: Preferred_unit + value: centimeter description: The average height of the walls in the sampled room title: wall height keywords: @@ -14100,7 +14723,7 @@ slots: slot_uri: MIXS:0000221 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -14138,7 +14761,9 @@ slots: range: CeilingWallTextureEnum wall_thermal_mass: annotations: - Preferred_unit: joule per degree Celsius + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius description: The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint @@ -14149,7 +14774,7 @@ slots: slot_uri: MIXS:0000222 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -14165,14 +14790,16 @@ slots: range: MoldVisibilityEnum wastewater_type: annotations: - Expected_value: wastewater type name + Expected_value: + tag: Expected_value + value: wastewater type name description: The origin of wastewater such as human waste, rainfall, storm drains, etc title: wastewater type keywords: - type - range: string slot_uri: MIXS:0000353 + range: string water_cont_soil_meth: description: Reference or method used in determining the water content of soil title: water content method @@ -14189,7 +14816,9 @@ slots: partial_match: true water_content: annotations: - Preferred_unit: gram per gram or cubic centimeter per cubic centimeter + Preferred_unit: + tag: Preferred_unit + value: gram per gram or cubic centimeter per cubic centimeter description: Water content measurement title: water content keywords: @@ -14198,14 +14827,16 @@ slots: slot_uri: MIXS:0000185 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_current: annotations: - Preferred_unit: cubic meter per second, knots + Preferred_unit: + tag: Preferred_unit + value: cubic meter per second, knots description: Measurement of magnitude and direction of flow within a fluid title: water current examples: @@ -14215,14 +14846,16 @@ slots: slot_uri: MIXS:0000203 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_cut: annotations: - Preferred_unit: percent + Preferred_unit: + tag: Preferred_unit + value: percent description: Current amount of water (%) in a produced fluid stream; or the average of the combined streams title: water cut @@ -14236,14 +14869,16 @@ slots: range: string required: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_feat_size: annotations: - Preferred_unit: square meter + Preferred_unit: + tag: Preferred_unit + value: square meter description: The size of the water feature title: water feature size keywords: @@ -14253,7 +14888,7 @@ slots: slot_uri: MIXS:0000223 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -14271,8 +14906,12 @@ slots: range: WaterFeatTypeEnum water_frequency: annotations: - Expected_value: rate - Preferred_unit: per day, per week, per month + Expected_value: + tag: Expected_value + value: rate + Preferred_unit: + tag: Preferred_unit + value: per day, per week, per month description: Number of water delivery events within a given period of time title: water delivery frequency examples: @@ -14294,7 +14933,9 @@ slots: range: float water_prod_rate: annotations: - Preferred_unit: cubic meter per day + Preferred_unit: + tag: Preferred_unit + value: cubic meter per day description: Water production rates per well (e.g. 987 m3 / day) title: water production rate keywords: @@ -14305,14 +14946,16 @@ slots: range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_source_adjac: annotations: - Expected_value: ENVO_01001110 or ENVO_00000070 + Expected_value: + tag: Expected_value + value: ENVO_01001110 or ENVO_00000070 description: Description of the environmental features that are adjacent to the farm water source. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple @@ -14326,12 +14969,14 @@ slots: - feature - source - water - range: string slot_uri: MIXS:0001122 + range: string multivalued: true water_source_shared: annotations: - Expected_value: enumeration + Expected_value: + tag: Expected_value + value: enumeration description: Other users sharing access to the same water source. Multiple terms can be separated by one or more pipes title: water source shared @@ -14340,16 +14985,19 @@ slots: keywords: - source - water - string_serialization: '[multiple users, agricutural|multiple users, other|no sharing]' + string_serialization: '[multiple users, agricutural|multiple users, other|no + sharing]' slot_uri: MIXS:0001176 multivalued: true water_temp_regm: annotations: - Preferred_unit: degree Celsius - description: Information about treatment involving an exposure to water with varying - degree of temperature, treatment regimen including how many times the treatment - was repeated, how long each treatment lasted, and the start and end time of - the entire treatment; can include multiple regimens + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Information about treatment involving an exposure to water with + varying degree of temperature, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple regimens title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -14358,15 +15006,17 @@ slots: - temperature - water slot_uri: MIXS:0000590 - multivalued: true range: string + multivalued: true watering_regm: annotations: - Preferred_unit: milliliter, liter + Preferred_unit: + tag: Preferred_unit + value: milliliter, liter description: Information about treatment involving an exposure to watering frequencies, - treatment regimen including how many times the treatment was repeated, how long - each treatment lasted, and the start and end time of the entire treatment; can - include multiple regimens + treatment regimen including how many times the treatment was repeated, how + long each treatment lasted, and the start and end time of the entire treatment; + can include multiple regimens title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M @@ -14374,8 +15024,8 @@ slots: - regimen - water slot_uri: MIXS:0000591 - multivalued: true range: string + multivalued: true weekday: description: The day of the week when sampling occurred title: weekday @@ -14385,8 +15035,12 @@ slots: range: WeekdayEnum weight_loss_3_month: annotations: - Expected_value: weight loss specification;measurement value - Preferred_unit: kilogram, gram + Expected_value: + tag: Expected_value + value: weight loss specification;measurement value + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram description: Specification of weight loss in the last three months, if yes should be further specified to include amount of weight loss title: weight loss in last three months @@ -14408,7 +15062,9 @@ slots: range: WgaAmpApprEnum wga_amp_kit: annotations: - Expected_value: kit name + Expected_value: + tag: Expected_value + value: kit name description: Kit used to amplify genomic DNA in preparation for sequencing title: WGA amplification kit examples: @@ -14417,13 +15073,14 @@ slots: - sequencing keywords: - kit - range: string slot_uri: MIXS:0000006 + range: string win: - description: 'A unique identifier of a well or wellbore. This is part of the Global - Framework for Well Identification initiative which is compiled by the Professional - Petroleum Data Management Association (PPDM) in an effort to improve well identification - systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)' + description: 'A unique identifier of a well or wellbore. This is part of the + Global Framework for Well Identification initiative which is compiled by the + Professional Petroleum Data Management Association (PPDM) in an effort to improve + well identification systems. (Supporting information: https://ppdm.org/ and + http://dl.ppdm.org/dl/690)' title: well identification number keywords: - identifier @@ -14433,7 +15090,9 @@ slots: recommended: true wind_direction: annotations: - Preferred_unit: degrees or cardinal direction + Preferred_unit: + tag: Preferred_unit + value: degrees or cardinal direction description: Wind direction is the direction from which a wind originates title: wind direction keywords: @@ -14450,7 +15109,7 @@ slots: slot_uri: MIXS:0000118 range: string pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -14513,8 +15172,12 @@ slots: range: integer window_size: annotations: - Expected_value: measurement value - Preferred_unit: inch, meter + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: inch, meter description: The window's length and width title: window area/size keywords: @@ -14590,14 +15253,16 @@ slots: partial_match: true xylene: annotations: - Preferred_unit: milligram per liter, parts per million + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million description: Concentration of xylene in the sample title: xylene slot_uri: MIXS:0000156 range: string recommended: true pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? - *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + *.*$ structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true @@ -15988,12 +16653,21 @@ classes: recommended: true class_uri: MIXS:0010012 Agriculture: - description: >- - A collection of terms appropriate when sequencing samples obtained in an agricultural environment. - Suitable to capture metadata appropriate to enhance crop productivity and agroecosystem health - with the aim to facilitate research of agricultural microbiomes and their relationships to plant productivity - and sustainable crop production from diverse crop management contexts. + annotations: + use_cases: + tag: use_cases + value: Agricultural Microbiomes Research Coordination Network, model cropping + and plant systems focused on agricultural plant and soil microbe; microbiome + studies in agricultural sites; long-term ecological research in croplands; + eDNA in manure samples; describing agricultural microbiome studies + description: A collection of terms appropriate when sequencing samples obtained + in an agricultural environment. Suitable to capture metadata appropriate to + enhance crop productivity and agroecosystem health with the aim to facilitate + research of agricultural microbiomes and their relationships to plant productivity and + sustainable crop production from diverse crop management contexts. title: agriculture + aliases: + - MIxS-Ag (agriculture) is_a: Extension slots: - plant_growth_med @@ -16400,14 +17074,16 @@ classes: string_serialization: '{float} {unit};{period};{interval};{period}' recommended: true class_uri: MIXS:0016018 - aliases: - - MIxS-Ag (agriculture) - annotations: - use_cases: Agricultural Microbiomes Research Coordination Network, model cropping and plant systems focused on agricultural plant and soil microbe; microbiome studies in agricultural sites; long-term ecological research in croplands; eDNA in manure samples; describing agricultural microbiome studies Air: - description: >- - A collection of terms appropriate when collecting and sequencing samples obtained from a gaseous environment. + annotations: + use_cases: + tag: use_cases + value: bioaerosol samples, pathogen load in urban air, aerosols + description: A collection of terms appropriate when collecting and sequencing + samples obtained from a gaseous environment. title: air + aliases: + - MIxS-air is_a: Extension slots: - samp_name @@ -16460,16 +17136,19 @@ classes: examples: - value: 21 kilometer per hour class_uri: MIXS:0016000 - aliases: - - MIxS-air - annotations: - use_cases: bioaerosol samples, pathogen load in urban air, aerosols BuiltEnvironment: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples obtained in the - built-up environment, which includes terms for surface material, humidity, temperature, moisture and - occupancy type along with specific metadata terms describing the indoor air, building and sample properties. + annotations: + use_cases: + tag: use_cases + value: microbiology studies of the built environment, NASA space station + sampling, MetaSUB transit system sampling, home, hospitals, office buildings + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained in the built-up environment, which includes terms for surface + material, humidity, temperature, moisture and occupancy type along with specific + metadata terms describing the indoor air, building and sample properties. title: built environment + aliases: + - MIxS-BE (built environment) is_a: Extension slots: - samp_name @@ -16659,19 +17338,20 @@ classes: ventilation_type: required: true class_uri: MIXS:0016001 - aliases: - - MIxS-BE (built environment) - annotations: - use_cases: microbiology studies of the built environment, NASA space station sampling, MetaSUB transit system sampling, home, hospitals, office buildings FoodAnimalAndAnimalFeed: - description: >- - A collection of terms appropriate when collecting samples and performing sequencing of samples - obtained from farm animals and their feed. - comments: - - This extension is intended to work alongside the other food extensions - (farm environment, food production facility, and human foods) for capturing contextual data - across the food supply-chain environment. + annotations: + use_cases: + tag: use_cases + value: Microbiome of farm animals, their feed, and pet food. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from farm animals and their feed. title: food-animal and animal feed + comments: + - This extension is intended to work alongside the other food extensions (farm + environment, food production facility, and human foods) for capturing contextual + data across the food supply-chain environment. + aliases: + - MIxS-Food (animal and animal feed) is_a: Extension slots: - samp_name @@ -16809,19 +17489,22 @@ classes: samp_purpose: required: true class_uri: MIXS:0016019 - aliases: - - MIxS-Food (animal and animal feed) - annotations: - use_cases: Microbiome of farm animals, their feed, and pet food. FoodFarmEnvironment: - description: >- - A collection of terms appropriate when collecting samples and performing sequencing of samples - obtained from the farm environment, including soil, manure, and food harvesting equipment. - comments: - - This extension is intended to work alongside the other food extensions - (animals and animal feed, food production facility, and human foods) - for capturing contextual data across the food supply-chain environment. + annotations: + use_cases: + tag: use_cases + value: Microbiome of farm and field crops as well as environmental samples + including irrigation, soil amendments, and farm equipment. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from the farm environment, including soil, + manure, and food harvesting equipment. title: food-farm environment + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, food production facility, and human foods) for capturing + contextual data across the food supply-chain environment. + aliases: + - MIxS-Food (farm environment) is_a: Extension slots: - samp_name @@ -17039,19 +17722,20 @@ classes: examples: - value: 1.6 kilometers per hour class_uri: MIXS:0016020 - aliases: - - MIxS-Food (farm environment) - annotations: - use_cases: Microbiome of farm and field crops as well as environmental samples including irrigation, soil amendments, and farm equipment. FoodFoodProductionFacility: - description: >- - A collection of terms appropriate when collecting samples and performing sequencing of samples - obtained from food production facilities. - comments: - - This extension is intended to work alongside the other food extensions - (animals and animal feed, farm environment, and human foods) - for capturing contextual data across the food supply-chain environment. + annotations: + use_cases: + tag: use_cases + value: Microbiome of food production facilities/factories + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from food production facilities. title: food-food production facility + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, farm environment, and human foods) for capturing contextual + data across the food supply-chain environment. + aliases: + - MIxS-Food(food production facility) is_a: Extension slots: - samp_name @@ -17197,19 +17881,20 @@ classes: samp_stor_media: required: true class_uri: MIXS:0016021 - aliases: - - MIxS-Food(food production facility) - annotations: - use_cases: Microbiome of food production facilities/factories FoodHumanFoods: - description: >- - A collection of terms appropriate when collecting samples and performing sequencing of samples - obtained from human food products. - comments: - - This extension is intended to work alongside the other food extensions - (animals and animal feed, farm environment, and food production facilities) - for capturing contextual data across the food supply-chain environment. + annotations: + use_cases: + tag: use_cases + value: Microbiome of foods intended for human consumption. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from human food products. title: food-human foods + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, farm environment, and food production facilities) for capturing + contextual data across the food supply-chain environment. + aliases: + - MIxS-Food (human foods) is_a: Extension slots: - samp_name @@ -17347,24 +18032,28 @@ classes: examples: - value: environmental swab sampling class_uri: MIXS:0016022 - aliases: - - MIxS-Food (human foods) - annotations: - use_cases: Microbiome of foods intended for human consumption. HostAssociated: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a non-human host, to examine the host-associated microbiome or genome. - comments: - - This is a very broad package, intended to capture many kinds of sequences derived - from the bodies of or derived from an organism. Where possible, please use a more specific package. - For example, consider using food-animal and animal feed extension for sampling of farm animals reared for consumption. - For human stool microbiomes, consider MIxS-human-gut. - Incidental associations of environmental material with an organism may also be better served by other packages. - For example, nucleic acids derived from soil that was sampled from the hoof of a cow may be better described - by terms from the soil extension; - however, soil embedded in a wound on a cow’s leg would be best described by terms in this extension + annotations: + use_cases: + tag: use_cases + value: elephant fecal matter or cat oral cavity + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a non-human host, to examine the host-associated microbiome + or genome. title: host-associated + comments: + - This is a very broad package, intended to capture many kinds of sequences + derived from the bodies of or derived from an organism. Where possible, please + use a more specific package. For example, consider using food-animal and + animal feed extension for sampling of farm animals reared for consumption. + For human stool microbiomes, consider MIxS-human-gut. Incidental associations + of environmental material with an organism may also be better served by other + packages. For example, nucleic acids derived from soil that was sampled from + the hoof of a cow may be better described by terms from the soil extension; + however, soil embedded in a wound on a cow’s leg would be best described + by terms in this extension + aliases: + - MIxS-host-associated is_a: Extension slots: - samp_name @@ -17482,18 +18171,19 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016002 - aliases: - - MIxS-host-associated - annotations: - use_cases: elephant fecal matter or cat oral cavity HumanAssociated: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a person to examine their human-associated microbiome or genome, - that does not have a specific extension (e.g., skin, gut, vaginal). + annotations: + use_cases: + tag: use_cases + value: blood samples or biopsy samples. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their human-associated microbiome + or genome, that does not have a specific extension (e.g., skin, gut, vaginal). + title: human-associated comments: - For stool samples use MIxS-human-gut extension. - title: human-associated + aliases: + - MIxS-human-associated is_a: Extension slots: - samp_name @@ -17593,15 +18283,17 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016003 - aliases: - - MIxS-human-associated - annotations: - use_cases: blood samples or biopsy samples. HumanGut: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a person to examine their gut-associated microbiome. + annotations: + use_cases: + tag: use_cases + value: human stool or fecal samples, or samples collected directly from the + gut. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their gut-associated microbiome. title: human-gut + aliases: + - MIxS-human-gut is_a: Extension slots: - samp_name @@ -17685,15 +18377,17 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016004 - aliases: - - MIxS-human-gut - annotations: - use_cases: human stool or fecal samples, or samples collected directly from the gut. HumanOral: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a person to examine their oral-associated microbiome. + annotations: + use_cases: + tag: use_cases + value: mouth swab sampling, dental microbiome samples, microbiome of oral + swabs, nasal, mouth, throat, teeth, tongue microbiome studies + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their oral-associated microbiome. title: human-oral + aliases: + - MIxS-human-oral is_a: Extension slots: - samp_name @@ -17776,16 +18470,16 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016005 - aliases: - - MIxS-human-oral - - annotations: - use_cases: mouth swab sampling, dental microbiome samples, microbiome of oral swabs, nasal, mouth, throat, teeth, tongue microbiome studies HumanSkin: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a person to examine their skin-associated microbiome. + annotations: + use_cases: + tag: use_cases + value: swab samples taken on a person’s skin surface. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their skin-associated microbiome. title: human-skin + aliases: + - MIxS-human-skin is_a: Extension slots: - samp_name @@ -17869,15 +18563,16 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016006 - aliases: - - MIxS-human-skin - annotations: - use_cases: swab samples taken on a person’s skin surface. HumanVaginal: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a person to examine their vaginal-associated microbiome. + annotations: + use_cases: + tag: use_cases + value: vaginal swabbing + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their vaginal-associated microbiome. title: human-vaginal + aliases: + - MIxS-human-vaginal is_a: Extension slots: - samp_name @@ -17968,15 +18663,19 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016007 - aliases: - - MIxS-human-vaginal - annotations: - use_cases: vaginal swabbing HydrocarbonResourcesCores: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from environments pertaining to hydrocarbon resources, specifically core samples. + annotations: + use_cases: + tag: use_cases + value: The microbial characterization of hydrocarbon occurrences, defined + as the natural and artificial environmental features that are rich in hydrocarbons, + from hydrocarbon rich formations, such as reservoir cores. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from environments pertaining to hydrocarbon resources, specifically + core samples. title: hydrocarbon resources-cores + aliases: + - MIxS-HCR (hydrocarbon resources-cores) is_a: Extension slots: - samp_name @@ -18094,15 +18793,19 @@ classes: vfa_fw: required: true class_uri: MIXS:0016015 - aliases: - - MIxS-HCR (hydrocarbon resources-cores) - annotations: - use_cases: The microbial characterization of hydrocarbon occurrences, defined as the natural and artificial environmental features that are rich in hydrocarbons, from hydrocarbon rich formations, such as reservoir cores. HydrocarbonResourcesFluidsSwabs: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from environments pertaining to hydrocarbon resources, specifically run-off liquids samples and swabs. + annotations: + use_cases: + tag: use_cases + value: The microbial characterization of hydrocarbon occurrences, defined + as the natural and artificial environmental features that are rich in hydrocarbons, + from hydrocarbon resource fluids. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from environments pertaining to hydrocarbon resources, specifically + run-off liquids samples and swabs. title: hydrocarbon resources-fluids/swabs + aliases: + - MIxS-HCR (hydrocarbon resources-fluids/swabs) is_a: Extension slots: - samp_name @@ -18224,15 +18927,16 @@ classes: vfa_fw: recommended: true class_uri: MIXS:0016016 - aliases: - - MIxS-HCR (hydrocarbon resources-fluids/swabs) - annotations: - use_cases: The microbial characterization of hydrocarbon occurrences, defined as the natural and artificial environmental features that are rich in hydrocarbons, from hydrocarbon resource fluids. MicrobialMatBiofilm: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from biofilm environments including microbial mats. + annotations: + use_cases: + tag: use_cases + value: samples from microbial mats at cold seeps + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from biofilm environments including microbial mats. title: microbial mat/biofilm + aliases: + - MIxS-microbial mat/biofilm is_a: Extension slots: - samp_name @@ -18315,15 +19019,13 @@ classes: water_content: string_serialization: '{float} {unit}' class_uri: MIXS:0016008 - aliases: - - MIxS-microbial mat/biofilm - annotations: - use_cases: samples from microbial mats at cold seeps MiscellaneousNaturalOrArtificialEnvironment: - description: >- - A collection of generic terms appropriate when collecting and sequencing samples - obtained from environments, where there is no specific extension already available. + description: A collection of generic terms appropriate when collecting and sequencing + samples obtained from environments, where there is no specific extension already + available. title: miscellaneous natural or artificial environment + aliases: + - MIxS-miscellaneous natural or artificial environment is_a: Extension slots: - samp_name @@ -18385,13 +19087,17 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016009 - aliases: - - MIxS-miscellaneous natural or artificial environment PlantAssociated: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from a plant to examine it’s plant-associated microbiome. + annotations: + use_cases: + tag: use_cases + value: plant surface swabs, root soil or rhizosphere, cultivated plants, + plant phenotyping + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a plant to examine it’s plant-associated microbiome. title: plant-associated + aliases: + - MIxS-plant-associated is_a: Extension slots: - samp_name @@ -18538,17 +19244,19 @@ classes: watering_regm: string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' class_uri: MIXS:0016010 - aliases: - - MIxS-plant-associated - annotations: - use_cases: plant surface swabs, root soil or rhizosphere, cultivated plants, plant phenotyping Sediment: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from the sedimentary area of aquatic environments. - comments: - - Sedimentary layers in terrestrial environments will probably be better served by the soil extension. + annotations: + use_cases: + tag: use_cases + value: river bed or sea floor. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from the sedimentary area of aquatic environments. title: sediment + comments: + - Sedimentary layers in terrestrial environments will probably be better served + by the soil extension. + aliases: + - MIxS-sediment is_a: Extension slots: - samp_name @@ -18637,17 +19345,19 @@ classes: water_content: string_serialization: '{float} {unit}' class_uri: MIXS:0016011 - aliases: - - MIxS-sediment - annotations: - use_cases: river bed or sea floor. Soil: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from the uppermost layer of Earth's crust, contributed by the Terragenome Consortium. + annotations: + use_cases: + tag: use_cases + value: soil collection, island microbiome sampling, farm land or forest floor. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from the uppermost layer of Earth's crust, contributed by + the Terragenome Consortium. + title: soil see_also: - https://www.fao.org/agriculture/crops/thematic-sitemap/theme/spi/soil-biodiversity/research-into-soil-biodiversity/the-terragenome-project/en/ - title: soil + aliases: + - MIxS-soil is_a: Extension slots: - samp_name @@ -18725,15 +19435,17 @@ classes: water_content: string_serialization: '{float}' class_uri: MIXS:0016012 - aliases: - - MIxS-soil - annotations: - use_cases: soil collection, island microbiome sampling, farm land or forest floor. SymbiontAssociated: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from an organism that lives in close association with any other organism(s). + annotations: + use_cases: + tag: use_cases + value: the microbiome sequence of a flea sampled from a farm animal + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from an organism that lives in close association with any + other organism(s). title: symbiont-associated + aliases: + - MIxS-SA (symbiont-associated) is_a: Extension slots: - samp_name @@ -18847,15 +19559,16 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016023 - aliases: - - MIxS-SA (symbiont-associated) - annotations: - use_cases: the microbiome sequence of a flea sampled from a farm animal WastewaterSludge: - description: >- - A collection of terms appropriate when collecting samples and sequencing samples - obtained from any solid, semisolid or liquid waste. + annotations: + use_cases: + tag: use_cases + value: sewerage or industrial wastewater + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from any solid, semisolid or liquid waste. title: wastewater/sludge + aliases: + - MIxS-wastewater/sludge is_a: Extension slots: - samp_name @@ -18907,15 +19620,18 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016013 - aliases: - - MIxS-wastewater/sludge - annotations: - use_cases: sewerage or industrial wastewater Water: - description: >- - A collection of terms appropriate when collecting samples and sequencing water samples - obtained from any aquatic environment. + annotations: + use_cases: + tag: use_cases + value: sea or river water, global ocean sampling day + description: A collection of terms appropriate when collecting samples and sequencing + water samples obtained from any aquatic environment. title: water + see_also: + - https://www.vliz.be/projects/assembleplus/research/ocean-sampling-day-2018.html + aliases: + - MIxS-water is_a: Extension slots: - samp_name @@ -19014,18 +19730,14 @@ classes: examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR class_uri: MIXS:0016014 - aliases: - - MIxS-water - annotations: - use_cases: sea or river water, global ocean sampling day - see_also: - - https://www.vliz.be/projects/assembleplus/research/ocean-sampling-day-2018.html Checklist: description: A collection of metadata terms (slots) to minimally describe the - sampling and sequencing method of a specimen used to generate a nucleotide sequence. + sampling and sequencing method of a specimen used to generate a nucleotide + sequence. Extension: - description: A collection of recommended metadata terms (slots) developed by community - experts, describing the specific context under which a sample was collected. + description: A collection of recommended metadata terms (slots) developed by + community experts, describing the specific context under which a sample was + collected. aliases: - EnvironmentalPackage MixsCompliantData: @@ -20546,7 +21258,8 @@ classes: - Mimag class_uri: MIXS:0010011_0016003 MimagHumanGut: - description: MIxS Data that comply with the Mimag checklist and the HumanGut Extension + description: MIxS Data that comply with the Mimag checklist and the HumanGut + Extension title: Mimag combined with HumanGut in_subset: - combination_classes @@ -20635,7 +21348,8 @@ classes: - Mimag class_uri: MIXS:0010011_0016010 MimagSediment: - description: MIxS Data that comply with the Mimag checklist and the Sediment Extension + description: MIxS Data that comply with the Mimag checklist and the Sediment + Extension title: Mimag combined with Sediment in_subset: - combination_classes @@ -20900,7 +21614,8 @@ classes: - MimarksC class_uri: MIXS:0010009_0016013 MimarksCWater: - description: MIxS Data that comply with the MimarksC checklist and the Water Extension + description: MIxS Data that comply with the MimarksC checklist and the Water + Extension title: MimarksC combined with Water in_subset: - combination_classes @@ -21127,7 +21842,8 @@ classes: - MimarksS class_uri: MIXS:0010008_0016013 MimarksSWater: - description: MIxS Data that comply with the MimarksS checklist and the Water Extension + description: MIxS Data that comply with the MimarksS checklist and the Water + Extension title: MimarksS combined with Water in_subset: - combination_classes @@ -21234,7 +21950,8 @@ classes: - Mims class_uri: MIXS:0010007_0016004 MimsHumanOral: - description: MIxS Data that comply with the Mims checklist and the HumanOral Extension + description: MIxS Data that comply with the Mims checklist and the HumanOral + Extension title: Mims combined with HumanOral in_subset: - combination_classes @@ -21243,7 +21960,8 @@ classes: - Mims class_uri: MIXS:0010007_0016005 MimsHumanSkin: - description: MIxS Data that comply with the Mims checklist and the HumanSkin Extension + description: MIxS Data that comply with the Mims checklist and the HumanSkin + Extension title: Mims combined with HumanSkin in_subset: - combination_classes @@ -21448,7 +22166,8 @@ classes: - Misag class_uri: MIXS:0010010_0016003 MisagHumanGut: - description: MIxS Data that comply with the Misag checklist and the HumanGut Extension + description: MIxS Data that comply with the Misag checklist and the HumanGut + Extension title: Misag combined with HumanGut in_subset: - combination_classes @@ -21537,7 +22256,8 @@ classes: - Misag class_uri: MIXS:0010010_0016010 MisagSediment: - description: MIxS Data that comply with the Misag checklist and the Sediment Extension + description: MIxS Data that comply with the Misag checklist and the Sediment + Extension title: Misag combined with Sediment in_subset: - combination_classes @@ -21811,10 +22531,11 @@ classes: - Miuvig class_uri: MIXS:0010012_0016014 settings: - agrochemical_name: ".*" + agrochemical_name: .* amount: '[-+]?[0-9]*\.?[0-9]+' - add_recov_methods: 'Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer Addition|Surfactant Addition|Not Applicable|other' - DOI: '^doi:10.\d{2,9}/.*$' + add_recov_methods: Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer + Addition|Surfactant Addition|Not Applicable|other + DOI: ^doi:10.\d{2,9}/.*$ NCBItaxon_id: NCBITaxon:\d+ PMID: ^PMID:\d+$ URL: ^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$ @@ -21823,15 +22544,15 @@ settings: adapter_B_DNA_sequence: '[ACGTRKSYMWBHDVN]+' ambiguous_nucleotides: '[ACGTRKSYMWBHDVN]+' country: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) - date_time_stamp: '(\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$' + date_time_stamp: (\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$ duration: P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W) float: '[-+]?[0-9]*\.?[0-9]+' integer: '[1-9][0-9]*' lat: (-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) lon: -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2}) - name: '.*' + name: .* parameters: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) - particulate_matter_name: '.*' + particulate_matter_name: .* region: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) room_name: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) room_number: '[1-9][0-9]*' @@ -21841,6 +22562,6 @@ settings: storage_condition_type: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) termID: '[a-zA-Z]{2,}:[a-zA-Z0-9]\d+' termLabel: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) - text: '.*' + text: .* unit: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) version: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) diff --git a/assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions.yaml b/assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions.yaml new file mode 100644 index 0000000000..95ee46e9b0 --- /dev/null +++ b/assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions.yaml @@ -0,0 +1,27496 @@ +name: mixs +description: 'This file contains a YAML-formatted specification of the Minimum Information + about any (x) Sequence (MIxS) standard, generated using LinkML (https://linkml.io/linkml/). + This file is released by the Genomic Standards Consortium (GSC; https://www.gensc.org/) + for use by anyone handling data or information about biological sequences. This + file is also used as an authoritative ''source of truth'' to generate downstream + GSC artifacts, available here: https://github.com/GenomicsStandardsConsortium/mixs/tree/main/project' +comments: +- 'slot titles that are associated with more than one slot name/SCN: host sex' +source: https://github.com/GenomicsStandardsConsortium/mixs/raw/issue-610-temp-mixs-xlsx-home/mixs/excel/mixs_v6.xlsx +id: https://w3id.org/mixs +version: v6.2.0 +imports: +- linkml:types +prefixes: + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + MIXS: + prefix_prefix: MIXS + prefix_reference: https://w3id.org/mixs/ + xsd: + prefix_prefix: xsd + prefix_reference: http://www.w3.org/2001/XMLSchema# + shex: + prefix_prefix: shex + prefix_reference: http://www.w3.org/ns/shex# + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ +default_prefix: MIXS +default_range: string +subsets: + combination_classes: + name: combination_classes + from_schema: https://w3id.org/mixs + sequencing: + name: sequencing + from_schema: https://w3id.org/mixs + environment: + name: environment + from_schema: https://w3id.org/mixs + nucleic acid sequence source: + name: nucleic acid sequence source + from_schema: https://w3id.org/mixs + investigation: + name: investigation + from_schema: https://w3id.org/mixs +enums: + BiolStatEnum: + name: BiolStatEnum + description: Permissible values, used by term biol_stat + from_schema: https://w3id.org/mixs + permissible_values: + breeder's line: + text: breeder's line + clonal selection: + text: clonal selection + hybrid: + text: hybrid + inbred line: + text: inbred line + mutant: + text: mutant + natural: + text: natural + semi-natural: + text: semi-natural + wild: + text: wild + AssemblyQualEnum: + name: AssemblyQualEnum + description: Permissible values, used by term assembly_qual + from_schema: https://w3id.org/mixs + permissible_values: + Finished genome: + text: Finished genome + High-quality draft genome: + text: High-quality draft genome + Medium-quality draft genome: + text: Medium-quality draft genome + Low-quality draft genome: + text: Low-quality draft genome + Genome fragment(s): + text: Genome fragment(s) + AeroStrucEnum: + name: AeroStrucEnum + description: Permissible values, used by term aero_struc + from_schema: https://w3id.org/mixs + permissible_values: + glider: + text: glider + plane: + text: plane + AnimalBodyCondEnum: + name: AnimalBodyCondEnum + description: Permissible values, used by term animal_body_cond + from_schema: https://w3id.org/mixs + permissible_values: + normal: + text: normal + over conditioned: + text: over conditioned + under conditioned: + text: under conditioned + AnimalSexEnum: + name: AnimalSexEnum + description: Permissible values, used by term animal_sex + from_schema: https://w3id.org/mixs + permissible_values: + castrated female: + text: castrated female + castrated male: + text: castrated male + intact female: + text: intact female + intact male: + text: intact male + ArchStrucEnum: + name: ArchStrucEnum + description: Permissible values, used by term arch_struc + from_schema: https://w3id.org/mixs + permissible_values: + building: + text: building + home: + text: home + shed: + text: shed + BinParamEnum: + name: BinParamEnum + description: Permissible values, used by term bin_param + from_schema: https://w3id.org/mixs + permissible_values: + codon usage: + text: codon usage + combination: + text: combination + coverage: + text: coverage + homology search: + text: homology search + kmer: + text: kmer + BioticRelationshipEnum: + name: BioticRelationshipEnum + description: Permissible values, used by term biotic_relationship + from_schema: https://w3id.org/mixs + permissible_values: + commensalism: + text: commensalism + free living: + text: free living + mutualism: + text: mutualism + parasitism: + text: parasitism + symbiotic: + text: symbiotic + BuildingSettingEnum: + name: BuildingSettingEnum + description: Permissible values, used by term building_setting + from_schema: https://w3id.org/mixs + permissible_values: + exurban: + text: exurban + rural: + text: rural + suburban: + text: suburban + urban: + text: urban + BuildDocsEnum: + name: BuildDocsEnum + description: Permissible values, used by term build_docs + from_schema: https://w3id.org/mixs + permissible_values: + building information model: + text: building information model + commissioning report: + text: commissioning report + complaint logs: + text: complaint logs + contract administration: + text: contract administration + cost estimate: + text: cost estimate + janitorial schedules or logs: + text: janitorial schedules or logs + maintenance plans: + text: maintenance plans + schedule: + text: schedule + sections: + text: sections + shop drawings: + text: shop drawings + submittals: + text: submittals + ventilation system: + text: ventilation system + windows: + text: windows + BuildOccupTypeEnum: + name: BuildOccupTypeEnum + description: Permissible values, used by term build_occup_type + from_schema: https://w3id.org/mixs + permissible_values: + airport: + text: airport + commercial: + text: commercial + health care: + text: health care + high rise: + text: high rise + low rise: + text: low rise + market: + text: market + office: + text: office + residence: + text: residence + residential: + text: residential + restaurant: + text: restaurant + school: + text: school + sports complex: + text: sports complex + wood framed: + text: wood framed + BuiltStrucSetEnum: + name: BuiltStrucSetEnum + description: Permissible values, used by term built_struc_set + from_schema: https://w3id.org/mixs + permissible_values: + rural: + text: rural + urban: + text: urban + CeilFinishMatEnum: + name: CeilFinishMatEnum + description: Permissible values, used by term ceil_finish_mat + from_schema: https://w3id.org/mixs + permissible_values: + PVC: + text: PVC + drywall: + text: drywall + fiberglass: + text: fiberglass + metal: + text: metal + mineral fibre: + text: mineral fibre + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + plasterboard: + text: plasterboard + stucco: + text: stucco + tiles: + text: tiles + wood: + text: wood + CeilStrucEnum: + name: CeilStrucEnum + description: Permissible values, used by term ceil_struc + from_schema: https://w3id.org/mixs + permissible_values: + concrete: + text: concrete + wood frame: + text: wood frame + CeilTypeEnum: + name: CeilTypeEnum + description: Permissible values, used by term ceil_type + from_schema: https://w3id.org/mixs + permissible_values: + barrel-shaped: + text: barrel-shaped + cathedral: + text: cathedral + coffered: + text: coffered + concave: + text: concave + cove: + text: cove + dropped: + text: dropped + stretched: + text: stretched + ComplApprEnum: + name: ComplApprEnum + description: Permissible values, used by term compl_appr + from_schema: https://w3id.org/mixs + permissible_values: + marker gene: + text: marker gene + other: + text: other + reference based: + text: reference based + ContamScreenInputEnum: + name: ContamScreenInputEnum + description: Permissible values, used by term contam_screen_input + from_schema: https://w3id.org/mixs + permissible_values: + contigs: + text: contigs + reads: + text: reads + CultResultEnum: + name: CultResultEnum + description: Permissible values, used by term cult_result + from_schema: https://w3id.org/mixs + permissible_values: + absent: + text: absent + active: + text: active + inactive: + text: inactive + negative: + text: negative + 'no': + text: 'no' + positive: + text: positive + present: + text: present + 'yes': + text: 'yes' + DeposEnvEnum: + name: DeposEnvEnum + description: Permissible values, used by term depos_env + from_schema: https://w3id.org/mixs + permissible_values: + Continental - Aeolian: + text: Continental - Aeolian + Continental - Alluvial: + text: Continental - Alluvial + Continental - Fluvial: + text: Continental - Fluvial + Continental - Lacustrine: + text: Continental - Lacustrine + Marine - Deep: + text: Marine - Deep + Marine - Reef: + text: Marine - Reef + Marine - Shallow: + text: Marine - Shallow + Other - Evaporite: + text: Other - Evaporite + Other - Glacial: + text: Other - Glacial + Other - Volcanic: + text: Other - Volcanic + Transitional - Beach: + text: Transitional - Beach + Transitional - Deltaic: + text: Transitional - Deltaic + Transitional - Lagoonal: + text: Transitional - Lagoonal + Transitional - Lake: + text: Transitional - Lake + Transitional - Tidal: + text: Transitional - Tidal + other: + text: other + DominantHandEnum: + name: DominantHandEnum + description: Permissible values, used by term dominant_hand + from_schema: https://w3id.org/mixs + permissible_values: + ambidextrous: + text: ambidextrous + left: + text: left + right: + text: right + DoorCompTypeEnum: + name: DoorCompTypeEnum + description: Permissible values, used by term door_comp_type + from_schema: https://w3id.org/mixs + permissible_values: + metal covered: + text: metal covered + revolving: + text: revolving + sliding: + text: sliding + telescopic: + text: telescopic + DoorDirectEnum: + name: DoorDirectEnum + description: Permissible values, used by term door_direct + from_schema: https://w3id.org/mixs + permissible_values: + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + DoorMatEnum: + name: DoorMatEnum + description: Permissible values, used by term door_mat + from_schema: https://w3id.org/mixs + permissible_values: + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard + fiberglass: + text: fiberglass + metal: + text: metal + thermoplastic alloy: + text: thermoplastic alloy + vinyl: + text: vinyl + wood: + text: wood + wood/plastic composite: + text: wood/plastic composite + DoorMoveEnum: + name: DoorMoveEnum + description: Permissible values, used by term door_move + from_schema: https://w3id.org/mixs + permissible_values: + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + DoorTypeEnum: + name: DoorTypeEnum + description: Permissible values, used by term door_type + from_schema: https://w3id.org/mixs + permissible_values: + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + DoorTypeMetalEnum: + name: DoorTypeMetalEnum + description: Permissible values, used by term door_type_metal + from_schema: https://w3id.org/mixs + permissible_values: + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate + DrainageClassEnum: + name: DrainageClassEnum + description: Permissible values, used by term drainage_class + from_schema: https://w3id.org/mixs + permissible_values: + excessively drained: + text: excessively drained + moderately well: + text: moderately well + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + very poorly: + text: very poorly + well: + text: well + DrawingsEnum: + name: DrawingsEnum + description: Permissible values, used by term drawings + from_schema: https://w3id.org/mixs + permissible_values: + as built: + text: as built + bid: + text: bid + building navigation map: + text: building navigation map + construction: + text: construction + design: + text: design + diagram: + text: diagram + operation: + text: operation + sketch: + text: sketch + ExtrWeatherEventEnum: + name: ExtrWeatherEventEnum + description: Permissible values, used by term extr_weather_event + from_schema: https://w3id.org/mixs + permissible_values: + drought: + text: drought + dust storm: + text: dust storm + extreme cold: + text: extreme cold + extreme heat: + text: extreme heat + flood: + text: flood + frost: + text: frost + hail: + text: hail + high precipitation: + text: high precipitation + high winds: + text: high winds + FacilityTypeEnum: + name: FacilityTypeEnum + description: Permissible values, used by term facility_type + from_schema: https://w3id.org/mixs + permissible_values: + ambient storage: + text: ambient storage + caterer-catering point: + text: caterer-catering point + distribution: + text: distribution + frozen storage: + text: frozen storage + importer-broker: + text: importer-broker + interstate conveyance: + text: interstate conveyance + labeler-relabeler: + text: labeler-relabeler + manufacturing-processing: + text: manufacturing-processing + packaging: + text: packaging + refrigerated storage: + text: refrigerated storage + storage: + text: storage + FaoClassEnum: + name: FaoClassEnum + description: Permissible values, used by term fao_class + from_schema: https://w3id.org/mixs + permissible_values: + Acrisols: + text: Acrisols + Alisols: + text: Alisols + Andosols: + text: Andosols + Anthrosols: + text: Anthrosols + Arenosols: + text: Arenosols + Calcisols: + text: Calcisols + Cambisols: + text: Cambisols + Chernozems: + text: Chernozems + Cryosols: + text: Cryosols + Durisols: + text: Durisols + Ferralsols: + text: Ferralsols + Fluvisols: + text: Fluvisols + Gleysols: + text: Gleysols + Greyzems: + text: Greyzems + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Gypsisols: + text: Gypsisols + Histosols: + text: Histosols + Kastanozems: + text: Kastanozems + Lithosols: + text: Lithosols + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Leptosols: + text: Leptosols + Lixisols: + text: Lixisols + Luvisols: + text: Luvisols + Nitosols: + text: Nitosols + Phaeozems: + text: Phaeozems + Planosols: + text: Planosols + Plinthosols: + text: Plinthosols + Podzols: + text: Podzols + Podzoluvisols: + text: Podzoluvisols + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Rankers: + text: Rankers + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Regosols: + text: Regosols + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Rendzinas: + text: Rendzinas + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Solonchaks: + text: Solonchaks + Solonetz: + text: Solonetz + Stagnosols: + text: Stagnosols + Technosols: + text: Technosols + Umbrisols: + text: Umbrisols + Vertisols: + text: Vertisols + Yermosols: + text: Yermosols + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + FarmWaterSourceEnum: + name: FarmWaterSourceEnum + description: Permissible values, used by term farm_water_source + from_schema: https://w3id.org/mixs + permissible_values: + brackish: + text: brackish + canal: + text: canal + collected rainwater: + text: collected rainwater + ditch: + text: ditch + estuary: + text: estuary + freshwater: + text: freshwater + lake: + text: lake + manmade: + text: manmade + melt pond: + text: melt pond + municipal: + text: municipal + natural: + text: natural + pond: + text: pond + reservior: + text: reservior + river: + text: river + saline: + text: saline + storage tank: + text: storage tank + stream: + text: stream + well: + text: well + FilterTypeEnum: + name: FilterTypeEnum + description: Permissible values, used by term filter_type + from_schema: https://w3id.org/mixs + permissible_values: + HEPA: + text: HEPA + chemical air filter: + text: chemical air filter + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + low-MERV pleated media: + text: low-MERV pleated media + particulate air filter: + text: particulate air filter + FireplaceTypeEnum: + name: FireplaceTypeEnum + description: Permissible values, used by term fireplace_type + from_schema: https://w3id.org/mixs + permissible_values: + gas burning: + text: gas burning + wood burning: + text: wood burning + FloorStrucEnum: + name: FloorStrucEnum + description: Permissible values, used by term floor_struc + from_schema: https://w3id.org/mixs + permissible_values: + balcony: + text: balcony + concrete: + text: concrete + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + FloorWaterMoldEnum: + name: FloorWaterMoldEnum + description: Permissible values, used by term floor_water_mold + from_schema: https://w3id.org/mixs + permissible_values: + bulging walls: + text: bulging walls + ceiling discoloration: + text: ceiling discoloration + condensation: + text: condensation + floor discoloration: + text: floor discoloration + mold odor: + text: mold odor + peeling paint or wallpaper: + text: peeling paint or wallpaper + wall discoloration: + text: wall discoloration + water stains: + text: water stains + wet floor: + text: wet floor + FoodCleanProcEnum: + name: FoodCleanProcEnum + description: Permissible values, used by term food_clean_proc + from_schema: https://w3id.org/mixs + permissible_values: + drum and drain: + text: drum and drain + manual spinner: + text: manual spinner + rinsed with sanitizer solution: + text: rinsed with sanitizer solution + rinsed with water: + text: rinsed with water + scrubbed with brush: + text: scrubbed with brush + scrubbed with hand: + text: scrubbed with hand + soaking: + text: soaking + FoodTraceListEnum: + name: FoodTraceListEnum + description: Permissible values, used by term food_trace_list + from_schema: https://w3id.org/mixs + permissible_values: + cheeses-other than hard cheeses: + text: cheeses-other than hard cheeses + crustaceans: + text: crustaceans + cucumbers: + text: cucumbers + finfish-including smoked finfish: + text: finfish-including smoked finfish + fruits and vegetables-fresh cut: + text: fruits and vegetables-fresh cut + herbs-fresh: + text: herbs-fresh + leafy greens-including fresh cut leafy greens: + text: leafy greens-including fresh cut leafy greens + melons: + text: melons + mollusks-bivalves: + text: mollusks-bivalves + nut butter: + text: nut butter + peppers: + text: peppers + ready to eat deli salads: + text: ready to eat deli salads + shell eggs: + text: shell eggs + sprouts: + text: sprouts + tomatoes: + text: tomatoes + tropical tree fruits: + text: tropical tree fruits + FreqCleanEnum: + name: FreqCleanEnum + description: Permissible values, used by term freq_clean + from_schema: https://w3id.org/mixs + permissible_values: + Annually: + text: Annually + Daily: + text: Daily + Monthly: + text: Monthly + Quarterly: + text: Quarterly + Weekly: + text: Weekly + other: + text: other + FurnitureEnum: + name: FurnitureEnum + description: Permissible values, used by term furniture + from_schema: https://w3id.org/mixs + permissible_values: + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + GenderRestroomEnum: + name: GenderRestroomEnum + description: Permissible values, used by term gender_restroom + from_schema: https://w3id.org/mixs + permissible_values: + all gender: + text: all gender + female: + text: female + gender neutral: + text: gender neutral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + GrowthHabitEnum: + name: GrowthHabitEnum + description: Permissible values, used by term growth_habit + from_schema: https://w3id.org/mixs + permissible_values: + erect: + text: erect + prostrate: + text: prostrate + semi-erect: + text: semi-erect + spreading: + text: spreading + HandidnessEnum: + name: HandidnessEnum + description: Permissible values, used by term handidness + from_schema: https://w3id.org/mixs + permissible_values: + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness + HcrEnum: + name: HcrEnum + description: Permissible values, used by term hcr + from_schema: https://w3id.org/mixs + permissible_values: + Coalbed: + text: Coalbed + Gas Reservoir: + text: Gas Reservoir + Oil Reservoir: + text: Oil Reservoir + Oil Sand: + text: Oil Sand + Shale: + text: Shale + Tight Gas Reservoir: + text: Tight Gas Reservoir + Tight Oil Reservoir: + text: Tight Oil Reservoir + other: + text: other + HcProducedEnum: + name: HcProducedEnum + description: Permissible values, used by term hc_produced + from_schema: https://w3id.org/mixs + permissible_values: + Bitumen: + text: Bitumen + Coalbed Methane: + text: Coalbed Methane + Gas: + text: Gas + Gas-Condensate: + text: Gas-Condensate + Oil: + text: Oil + other: + text: other + HeatCoolTypeEnum: + name: HeatCoolTypeEnum + description: Permissible values, used by term heat_cool_type + from_schema: https://w3id.org/mixs + permissible_values: + forced air system: + text: forced air system + heat pump: + text: heat pump + radiant system: + text: radiant system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + HeatSysDelivMethEnum: + name: HeatSysDelivMethEnum + description: Permissible values, used by term heat_sys_deliv_meth + from_schema: https://w3id.org/mixs + permissible_values: + conductive: + text: conductive + radiant: + text: radiant + HostCellularLocEnum: + name: HostCellularLocEnum + description: Permissible values, used by term host_cellular_loc + from_schema: https://w3id.org/mixs + permissible_values: + extracellular: + text: extracellular + intracellular: + text: intracellular + not determined: + text: not determined + HostDependenceEnum: + name: HostDependenceEnum + description: Permissible values, used by term host_dependence + from_schema: https://w3id.org/mixs + permissible_values: + facultative: + text: facultative + obligate: + text: obligate + HostPredApprEnum: + name: HostPredApprEnum + description: Permissible values, used by term host_pred_appr + from_schema: https://w3id.org/mixs + permissible_values: + CRISPR spacer match: + text: CRISPR spacer match + co-occurrence: + text: co-occurrence + combination: + text: combination + host sequence similarity: + text: host sequence similarity + kmer similarity: + text: kmer similarity + other: + text: other + provirus: + text: provirus + HostSpecificityEnum: + name: HostSpecificityEnum + description: Permissible values, used by term host_specificity + from_schema: https://w3id.org/mixs + permissible_values: + family-specific: + text: family-specific + generalist: + text: generalist + genus-specific: + text: genus-specific + species-specific: + text: species-specific + IndoorSpaceEnum: + name: IndoorSpaceEnum + description: Permissible values, used by term indoor_space + from_schema: https://w3id.org/mixs + permissible_values: + bathroom: + text: bathroom + bedroom: + text: bedroom + elevator: + text: elevator + foyer: + text: foyer + hallway: + text: hallway + kitchen: + text: kitchen + locker room: + text: locker room + office: + text: office + IndoorSurfEnum: + name: IndoorSurfEnum + description: Permissible values, used by term indoor_surf + from_schema: https://w3id.org/mixs + permissible_values: + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + wall: + text: wall + window: + text: window + LibLayoutEnum: + name: LibLayoutEnum + description: Permissible values, used by term lib_layout + from_schema: https://w3id.org/mixs + permissible_values: + other: + text: other + paired: + text: paired + single: + text: single + vector: + text: vector + LightTypeEnum: + name: LightTypeEnum + description: Permissible values, used by term light_type + from_schema: https://w3id.org/mixs + permissible_values: + desk lamp: + text: desk lamp + electric light: + text: electric light + fluorescent lights: + text: fluorescent lights + natural light: + text: natural light + none: + text: none + LithologyEnum: + name: LithologyEnum + description: Permissible values, used by term lithology + from_schema: https://w3id.org/mixs + permissible_values: + Basement: + text: Basement + Chalk: + text: Chalk + Chert: + text: Chert + Coal: + text: Coal + Conglomerate: + text: Conglomerate + Diatomite: + text: Diatomite + Dolomite: + text: Dolomite + Limestone: + text: Limestone + Sandstone: + text: Sandstone + Shale: + text: Shale + Siltstone: + text: Siltstone + Volcanic: + text: Volcanic + other: + text: other + MagCovSoftwareEnum: + name: MagCovSoftwareEnum + description: Permissible values, used by term mag_cov_software + from_schema: https://w3id.org/mixs + permissible_values: + bbmap: + text: bbmap + bowtie: + text: bowtie + bwa: + text: bwa + other: + text: other + MechStrucEnum: + name: MechStrucEnum + description: Permissible values, used by term mech_struc + from_schema: https://w3id.org/mixs + permissible_values: + boat: + text: boat + bus: + text: bus + car: + text: car + carriage: + text: carriage + coach: + text: coach + elevator: + text: elevator + escalator: + text: escalator + subway: + text: subway + train: + text: train + ModeTransmissionEnum: + name: ModeTransmissionEnum + description: Permissible values, used by term mode_transmission + from_schema: https://w3id.org/mixs + permissible_values: + horizontal:castrator: + text: horizontal:castrator + horizontal:directly transmitted: + text: horizontal:directly transmitted + horizontal:micropredator: + text: horizontal:micropredator + horizontal:parasitoid: + text: horizontal:parasitoid + horizontal:trophically transmitted: + text: horizontal:trophically transmitted + horizontal:vector transmitted: + text: horizontal:vector transmitted + vertical: + text: vertical + NegContTypeEnum: + name: NegContTypeEnum + description: Permissible values, used by term neg_cont_type + from_schema: https://w3id.org/mixs + permissible_values: + DNA-free PCR mix: + text: DNA-free PCR mix + distilled water: + text: distilled water + empty collection device: + text: empty collection device + empty collection tube: + text: empty collection tube + phosphate buffer: + text: phosphate buffer + sterile swab: + text: sterile swab + sterile syringe: + text: sterile syringe + OccupDocumentEnum: + name: OccupDocumentEnum + description: Permissible values, used by term occup_document + from_schema: https://w3id.org/mixs + permissible_values: + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + OxyStatSampEnum: + name: OxyStatSampEnum + description: Permissible values, used by term oxy_stat_samp + from_schema: https://w3id.org/mixs + permissible_values: + aerobic: + text: aerobic + anaerobic: + text: anaerobic + other: + text: other + PlantReprodCropEnum: + name: PlantReprodCropEnum + description: Permissible values, used by term plant_reprod_crop + from_schema: https://w3id.org/mixs + permissible_values: + plant cutting: + text: plant cutting + pregerminated seed: + text: pregerminated seed + ratoon: + text: ratoon + seed: + text: seed + seedling: + text: seedling + whole mature plant: + text: whole mature plant + PlantSexEnum: + name: PlantSexEnum + description: Permissible values, used by term plant_sex + from_schema: https://w3id.org/mixs + permissible_values: + Androdioecious: + text: Androdioecious + Androecious: + text: Androecious + Androgynomonoecious: + text: Androgynomonoecious + Androgynous: + text: Androgynous + Andromonoecious: + text: Andromonoecious + Bisexual: + text: Bisexual + Dichogamous: + text: Dichogamous + Diclinous: + text: Diclinous + Dioecious: + text: Dioecious + Gynodioecious: + text: Gynodioecious + Gynoecious: + text: Gynoecious + Gynomonoecious: + text: Gynomonoecious + Hermaphroditic: + text: Hermaphroditic + Imperfect: + text: Imperfect + Monoclinous: + text: Monoclinous + Monoecious: + text: Monoecious + Perfect: + text: Perfect + Polygamodioecious: + text: Polygamodioecious + Polygamomonoecious: + text: Polygamomonoecious + Polygamous: + text: Polygamous + Protandrous: + text: Protandrous + Protogynous: + text: Protogynous + Subandroecious: + text: Subandroecious + Subdioecious: + text: Subdioecious + Subgynoecious: + text: Subgynoecious + Synoecious: + text: Synoecious + Trimonoecious: + text: Trimonoecious + Trioecious: + text: Trioecious + Unisexual: + text: Unisexual + PredGenomeStrucEnum: + name: PredGenomeStrucEnum + description: Permissible values, used by term pred_genome_struc + from_schema: https://w3id.org/mixs + permissible_values: + non-segmented: + text: non-segmented + segmented: + text: segmented + undetermined: + text: undetermined + ProfilePositionEnum: + name: ProfilePositionEnum + description: Permissible values, used by term profile_position + from_schema: https://w3id.org/mixs + permissible_values: + backslope: + text: backslope + footslope: + text: footslope + shoulder: + text: shoulder + summit: + text: summit + toeslope: + text: toeslope + QuadPosEnum: + name: QuadPosEnum + description: Permissible values, used by term quad_pos + from_schema: https://w3id.org/mixs + permissible_values: + East side: + text: East side + North side: + text: North side + South side: + text: South side + West side: + text: West side + RelSampLocEnum: + name: RelSampLocEnum + description: Permissible values, used by term rel_samp_loc + from_schema: https://w3id.org/mixs + permissible_values: + center of car: + text: center of car + edge of car: + text: edge of car + under a seat: + text: under a seat + RelToOxygenEnum: + name: RelToOxygenEnum + description: Permissible values, used by term rel_to_oxygen + from_schema: https://w3id.org/mixs + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe + RoomCondtEnum: + name: RoomCondtEnum + description: Permissible values, used by term room_condt + from_schema: https://w3id.org/mixs + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + visible wear: + text: visible wear + RoomConnectedEnum: + name: RoomConnectedEnum + description: Permissible values, used by term room_connected + from_schema: https://w3id.org/mixs + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell + RoomLocEnum: + name: RoomLocEnum + description: Permissible values, used by term room_loc + from_schema: https://w3id.org/mixs + permissible_values: + corner room: + text: corner room + exterior wall: + text: exterior wall + interior room: + text: interior room + RoomSampPosEnum: + name: RoomSampPosEnum + description: Permissible values, used by term room_samp_pos + from_schema: https://w3id.org/mixs + permissible_values: + center: + text: center + east corner: + text: east corner + north corner: + text: north corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + south corner: + text: south corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + west corner: + text: west corner + RouteTransmissionEnum: + name: RouteTransmissionEnum + description: Permissible values, used by term route_transmission + from_schema: https://w3id.org/mixs + permissible_values: + environmental:faecal-oral: + text: environmental:faecal-oral + transplacental: + text: transplacental + vector-borne:vector penetration: + text: vector-borne:vector penetration + SampCaptStatusEnum: + name: SampCaptStatusEnum + description: Permissible values, used by term samp_capt_status + from_schema: https://w3id.org/mixs + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + SampCollectPointEnum: + name: SampCollectPointEnum + description: Permissible values, used by term samp_collect_point + from_schema: https://w3id.org/mixs + permissible_values: + drilling rig: + text: drilling rig + other: + text: other + separator: + text: separator + storage tank: + text: storage tank + test well: + text: test well + well: + text: well + wellhead: + text: wellhead + SampDisStageEnum: + name: SampDisStageEnum + description: Permissible values, used by term samp_dis_stage + from_schema: https://w3id.org/mixs + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + other: + text: other + penetration: + text: penetration + SampLocConditionEnum: + name: SampLocConditionEnum + description: Permissible values, used by term samp_loc_condition + from_schema: https://w3id.org/mixs + permissible_values: + damaged: + text: damaged + new: + text: new + rupture: + text: rupture + visible signs of mold-mildew: + text: visible signs of mold-mildew + visible weariness repair: + text: visible weariness repair + SampSubtypeEnum: + name: SampSubtypeEnum + description: Permissible values, used by term samp_subtype + from_schema: https://w3id.org/mixs + permissible_values: + biofilm: + text: biofilm + not applicable: + text: not applicable + oil phase: + text: oil phase + other: + text: other + water phase: + text: water phase + SampSurfMoistureEnum: + name: SampSurfMoistureEnum + description: Permissible values, used by term samp_surf_moisture + from_schema: https://w3id.org/mixs + permissible_values: + intermittent moisture: + text: intermittent moisture + not present: + text: not present + submerged: + text: submerged + SampTransportContEnum: + name: SampTransportContEnum + description: Permissible values, used by term samp_transport_cont + from_schema: https://w3id.org/mixs + permissible_values: + bottle: + text: bottle + cooler: + text: cooler + glass vial: + text: glass vial + plastic vial: + text: plastic vial + vendor supplied container: + text: vendor supplied container + SampWeatherEnum: + name: SampWeatherEnum + description: Permissible values, used by term samp_weather + from_schema: https://w3id.org/mixs + permissible_values: + clear sky: + text: clear sky + cloudy: + text: cloudy + foggy: + text: foggy + hail: + text: hail + rain: + text: rain + sleet: + text: sleet + snow: + text: snow + sunny: + text: sunny + windy: + text: windy + ScLysisApproachEnum: + name: ScLysisApproachEnum + description: Permissible values, used by term sc_lysis_approach + from_schema: https://w3id.org/mixs + permissible_values: + chemical: + text: chemical + combination: + text: combination + enzymatic: + text: enzymatic + physical: + text: physical + SeasonUseEnum: + name: SeasonUseEnum + description: Permissible values, used by term season_use + from_schema: https://w3id.org/mixs + permissible_values: + Fall: + text: Fall + Spring: + text: Spring + Summer: + text: Summer + Winter: + text: Winter + SedimentTypeEnum: + name: SedimentTypeEnum + description: Permissible values, used by term sediment_type + from_schema: https://w3id.org/mixs + permissible_values: + biogenous: + text: biogenous + cosmogenous: + text: cosmogenous + hydrogenous: + text: hydrogenous + lithogenous: + text: lithogenous + SeqQualityCheckEnum: + name: SeqQualityCheckEnum + description: Permissible values, used by term seq_quality_check + from_schema: https://w3id.org/mixs + permissible_values: + manually edited: + text: manually edited + none: + text: none + ShadingDeviceLocEnum: + name: ShadingDeviceLocEnum + description: Permissible values, used by term shading_device_loc + from_schema: https://w3id.org/mixs + permissible_values: + exterior: + text: exterior + interior: + text: interior + ShadingDeviceTypeEnum: + name: ShadingDeviceTypeEnum + description: Permissible values, used by term shading_device_type + from_schema: https://w3id.org/mixs + permissible_values: + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + CompassDirections8Enum: + name: CompassDirections8Enum + description: 'Permissible values, used by 6 terms: door_loc, ext_wall_orient, + ext_window_orient, heat_deliv_loc, wall_loc, window_loc' + from_schema: https://w3id.org/mixs + permissible_values: + east: + text: east + north: + text: north + northeast: + text: northeast + northwest: + text: northwest + south: + text: south + southeast: + text: southeast + southwest: + text: southwest + west: + text: west + MoldVisibilityEnum: + name: MoldVisibilityEnum + description: 'Permissible values, used by 5 terms: ceil_water_mold, door_water_mold, + shad_dev_water_mold, wall_water_mold, window_water_mold' + from_schema: https://w3id.org/mixs + permissible_values: + no presence of mold visible: + text: no presence of mold visible + presence of mold visible: + text: presence of mold visible + DamagedRupturedEnum: + name: DamagedRupturedEnum + description: 'Permissible values, used by 3 terms: door_cond, shading_device_cond, + window_cond' + from_schema: https://w3id.org/mixs + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + DamagedEnum: + name: DamagedEnum + description: 'Permissible values, used by 3 terms: ceil_cond, floor_cond, int_wall_cond' + from_schema: https://w3id.org/mixs + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + CeilingWallTextureEnum: + name: CeilingWallTextureEnum + description: 'Permissible values, used by 2 terms: ceil_texture, wall_texture' + from_schema: https://w3id.org/mixs + permissible_values: + Santa-Fe texture: + text: Santa-Fe texture + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + orange peel: + text: orange peel + popcorn: + text: popcorn + rosebud stomp: + text: rosebud stomp + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + GeolAgeEnum: + name: GeolAgeEnum + description: 'Permissible values, used by 2 terms: hcr_geol_age, sr_geol_age' + from_schema: https://w3id.org/mixs + permissible_values: + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic + other: + text: other + SoilHorizonEnum: + name: SoilHorizonEnum + description: Permissible values, used by term soil_horizon + from_schema: https://w3id.org/mixs + permissible_values: + A horizon: + text: A horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + E horizon: + text: E horizon + O horizon: + text: O horizon + Permafrost: + text: Permafrost + R layer: + text: R layer + SoilTextureClassEnum: + name: SoilTextureClassEnum + description: Permissible values, used by term soil_texture_class + from_schema: https://w3id.org/mixs + permissible_values: + clay: + text: clay + clay loam: + text: clay loam + loam: + text: loam + loamy sand: + text: loamy sand + sand: + text: sand + sandy clay: + text: sandy clay + sandy clay loam: + text: sandy clay loam + sandy loam: + text: sandy loam + silt: + text: silt + silt loam: + text: silt loam + silty clay: + text: silty clay + silty clay loam: + text: silty clay loam + SortTechEnum: + name: SortTechEnum + description: Permissible values, used by term sort_tech + from_schema: https://w3id.org/mixs + permissible_values: + flow cytometric cell sorting: + text: flow cytometric cell sorting + lazer-tweezing: + text: lazer-tweezing + microfluidics: + text: microfluidics + micromanipulation: + text: micromanipulation + optical manipulation: + text: optical manipulation + other: + text: other + SpaceTypStateEnum: + name: SpaceTypStateEnum + description: Permissible values, used by term space_typ_state + from_schema: https://w3id.org/mixs + permissible_values: + typically occupied: + text: typically occupied + typically unoccupied: + text: typically unoccupied + SpecificEnum: + name: SpecificEnum + description: Permissible values, used by term specific + from_schema: https://w3id.org/mixs + permissible_values: + as built: + text: as built + bid: + text: bid + construction: + text: construction + design: + text: design + operation: + text: operation + photos: + text: photos + SrDepEnvEnum: + name: SrDepEnvEnum + description: Permissible values, used by term sr_dep_env + from_schema: https://w3id.org/mixs + permissible_values: + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Lacustine: + text: Lacustine + Marine: + text: Marine + other: + text: other + SrKerogTypeEnum: + name: SrKerogTypeEnum + description: Permissible values, used by term sr_kerog_type + from_schema: https://w3id.org/mixs + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + SrLithologyEnum: + name: SrLithologyEnum + description: Permissible values, used by term sr_lithology + from_schema: https://w3id.org/mixs + permissible_values: + Biosilicieous: + text: Biosilicieous + Carbonate: + text: Carbonate + Clastic: + text: Clastic + Coal: + text: Coal + other: + text: other + SubstructureTypeEnum: + name: SubstructureTypeEnum + description: Permissible values, used by term substructure_type + from_schema: https://w3id.org/mixs + permissible_values: + basement: + text: basement + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + SurfAirContEnum: + name: SurfAirContEnum + description: Permissible values, used by term surf_air_cont + from_schema: https://w3id.org/mixs + permissible_values: + biocides: + text: biocides + biological contaminants: + text: biological contaminants + dust: + text: dust + nutrients: + text: nutrients + organic matter: + text: organic matter + particulate matter: + text: particulate matter + radon: + text: radon + volatile organic compounds: + text: volatile organic compounds + SurfMaterialEnum: + name: SurfMaterialEnum + description: Permissible values, used by term surf_material + from_schema: https://w3id.org/mixs + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks + concrete: + text: concrete + glass: + text: glass + hay bales: + text: hay bales + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + SymbiontHostRoleEnum: + name: SymbiontHostRoleEnum + description: Permissible values, used by term symbiont_host_role + from_schema: https://w3id.org/mixs + permissible_values: + accidental: + text: accidental + dead-end: + text: dead-end + definitive: + text: definitive + intermediate: + text: intermediate + paratenic: + text: paratenic + reservoir: + text: reservoir + single host: + text: single host + SymLifeCycleTypeEnum: + name: SymLifeCycleTypeEnum + description: Permissible values, used by term sym_life_cycle_type + from_schema: https://w3id.org/mixs + permissible_values: + complex life cycle: + text: complex life cycle + simple life cycle: + text: simple life cycle + TaxIdentEnum: + name: TaxIdentEnum + description: Permissible values, used by term tax_ident + from_schema: https://w3id.org/mixs + permissible_values: + 16S rRNA gene: + text: 16S rRNA gene + multi-marker approach: + text: multi-marker approach + other: + text: other + TidalStageEnum: + name: TidalStageEnum + description: Permissible values, used by term tidal_stage + from_schema: https://w3id.org/mixs + permissible_values: + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide + low tide: + text: low tide + TillageEnum: + name: TillageEnum + description: Permissible values, used by term tillage + from_schema: https://w3id.org/mixs + permissible_values: + chisel: + text: chisel + cutting disc: + text: cutting disc + disc plough: + text: disc plough + drill: + text: drill + mouldboard: + text: mouldboard + ridge till: + text: ridge till + strip tillage: + text: strip tillage + tined: + text: tined + zonal tillage: + text: zonal tillage + TrainLineEnum: + name: TrainLineEnum + description: Permissible values, used by term train_line + from_schema: https://w3id.org/mixs + permissible_values: + green: + text: green + orange: + text: orange + red: + text: red + TrainStatLocEnum: + name: TrainStatLocEnum + description: Permissible values, used by term train_stat_loc + from_schema: https://w3id.org/mixs + permissible_values: + forest hills: + text: forest hills + riverside: + text: riverside + south station above ground: + text: south station above ground + south station amtrak: + text: south station amtrak + south station underground: + text: south station underground + TrainStopLocEnum: + name: TrainStopLocEnum + description: Permissible values, used by term train_stop_loc + from_schema: https://w3id.org/mixs + permissible_values: + downtown: + text: downtown + end: + text: end + mid: + text: mid + TrophicLevelEnum: + name: TrophicLevelEnum + description: Permissible values, used by term trophic_level + from_schema: https://w3id.org/mixs + permissible_values: + autotroph: + text: autotroph + carboxydotroph: + text: carboxydotroph + chemoautolithotroph: + text: chemoautolithotroph + chemoautotroph: + text: chemoautotroph + chemoheterotroph: + text: chemoheterotroph + chemolithoautotroph: + text: chemolithoautotroph + chemolithotroph: + text: chemolithotroph + chemoorganoheterotroph: + text: chemoorganoheterotroph + chemoorganotroph: + text: chemoorganotroph + chemosynthetic: + text: chemosynthetic + chemotroph: + text: chemotroph + copiotroph: + text: copiotroph + diazotroph: + text: diazotroph + facultative: + text: facultative + heterotroph: + text: heterotroph + lithoautotroph: + text: lithoautotroph + lithoheterotroph: + text: lithoheterotroph + lithotroph: + text: lithotroph + methanotroph: + text: methanotroph + methylotroph: + text: methylotroph + mixotroph: + text: mixotroph + obligate: + text: obligate + oligotroph: + text: oligotroph + organoheterotroph: + text: organoheterotroph + organotroph: + text: organotroph + photoautotroph: + text: photoautotroph + photoheterotroph: + text: photoheterotroph + photolithoautotroph: + text: photolithoautotroph + photolithotroph: + text: photolithotroph + photosynthetic: + text: photosynthetic + phototroph: + text: phototroph + TypeOfSymbiosisEnum: + name: TypeOfSymbiosisEnum + description: Permissible values, used by term type_of_symbiosis + from_schema: https://w3id.org/mixs + permissible_values: + commensalistic: + text: commensalistic + mutualistic: + text: mutualistic + parasitic: + text: parasitic + UrineCollectMethEnum: + name: UrineCollectMethEnum + description: Permissible values, used by term urine_collect_meth + from_schema: https://w3id.org/mixs + permissible_values: + catheter: + text: catheter + clean catch: + text: clean catch + UrobiomSexEnum: + name: UrobiomSexEnum + description: Permissible values, used by term urobiom_sex + from_schema: https://w3id.org/mixs + permissible_values: + female: + text: female + hermaphrodite: + text: hermaphrodite + male: + text: male + neuter: + text: neuter + VirusEnrichApprEnum: + name: VirusEnrichApprEnum + description: Permissible values, used by term virus_enrich_appr + from_schema: https://w3id.org/mixs + permissible_values: + CsCl density gradient: + text: CsCl density gradient + DNAse: + text: DNAse + FeCl Precipitation: + text: FeCl Precipitation + PEG Precipitation: + text: PEG Precipitation + RNAse: + text: RNAse + centrifugation: + text: centrifugation + filtration: + text: filtration + none: + text: none + other: + text: other + targeted sequence capture: + text: targeted sequence capture + ultracentrifugation: + text: ultracentrifugation + ultrafiltration: + text: ultrafiltration + WallConstTypeEnum: + name: WallConstTypeEnum + description: Permissible values, used by term wall_const_type + from_schema: https://w3id.org/mixs + permissible_values: + fire resistive: + text: fire resistive + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + WallFinishMatEnum: + name: WallFinishMatEnum + description: Permissible values, used by term wall_finish_mat + from_schema: https://w3id.org/mixs + permissible_values: + acoustical treatment: + text: acoustical treatment + gypsum board: + text: gypsum board + gypsum plaster: + text: gypsum plaster + masonry: + text: masonry + metal: + text: metal + plaster: + text: plaster + stone facing: + text: stone facing + terrazzo: + text: terrazzo + tile: + text: tile + veneer plaster: + text: veneer plaster + wood: + text: wood + WallSurfTreatmentEnum: + name: WallSurfTreatmentEnum + description: Permissible values, used by term wall_surf_treatment + from_schema: https://w3id.org/mixs + permissible_values: + fabric: + text: fabric + no treatment: + text: no treatment + painted: + text: painted + paneling: + text: paneling + stucco: + text: stucco + wall paper: + text: wall paper + WaterFeatTypeEnum: + name: WaterFeatTypeEnum + description: Permissible values, used by term water_feat_type + from_schema: https://w3id.org/mixs + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall + WeekdayEnum: + name: WeekdayEnum + description: Permissible values, used by term weekday + from_schema: https://w3id.org/mixs + permissible_values: + Friday: + text: Friday + Monday: + text: Monday + Saturday: + text: Saturday + Sunday: + text: Sunday + Thursday: + text: Thursday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + WgaAmpApprEnum: + name: WgaAmpApprEnum + description: Permissible values, used by term wga_amp_appr + from_schema: https://w3id.org/mixs + permissible_values: + mda based: + text: mda based + pcr based: + text: pcr based + WindowCoverEnum: + name: WindowCoverEnum + description: Permissible values, used by term window_cover + from_schema: https://w3id.org/mixs + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + WindowHorizPosEnum: + name: WindowHorizPosEnum + description: Permissible values, used by term window_horiz_pos + from_schema: https://w3id.org/mixs + permissible_values: + left: + text: left + middle: + text: middle + right: + text: right + WindowMatEnum: + name: WindowMatEnum + description: Permissible values, used by term window_mat + from_schema: https://w3id.org/mixs + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood + WindowStatusEnum: + name: WindowStatusEnum + description: Permissible values, used by term window_status + from_schema: https://w3id.org/mixs + permissible_values: + closed: + text: closed + open: + text: open + WindowTypeEnum: + name: WindowTypeEnum + description: Permissible values, used by term window_type + from_schema: https://w3id.org/mixs + permissible_values: + fixed window: + text: fixed window + horizontal sash window: + text: horizontal sash window + single-hung sash window: + text: single-hung sash window + WindowVertPosEnum: + name: WindowVertPosEnum + description: Permissible values, used by term window_vert_pos + from_schema: https://w3id.org/mixs + permissible_values: + bottom: + text: bottom + high: + text: high + low: + text: low + middle: + text: middle + top: + text: top +slots: + migs_ba_data: + name: migs_ba_data + description: Data that comply with checklist MigsBa + title: MigsBa data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_data + range: MigsBa + multivalued: true + inlined: true + inlined_as_list: true + agriculture_data: + name: agriculture_data + description: Data that comply with Extension Agriculture + title: Agriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:agriculture_data + range: Agriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_agriculture_data: + name: migs_ba_agriculture_data + description: Data that comply with MigsBa combined with Agriculture + title: MigsBaAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_agriculture_data + range: MigsBaAgriculture + multivalued: true + inlined: true + inlined_as_list: true + air_data: + name: air_data + description: Data that comply with Extension Air + title: Air data + from_schema: https://w3id.org/mixs + keywords: + - air + domain: MixsCompliantData + slot_uri: MIXS:air_data + range: Air + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_air_data: + name: migs_ba_air_data + description: Data that comply with MigsBa combined with Air + title: MigsBaAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_air_data + range: MigsBaAir + multivalued: true + inlined: true + inlined_as_list: true + built_environment_data: + name: built_environment_data + description: Data that comply with Extension BuiltEnvironment + title: BuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:built_environment_data + range: BuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_built_environment_data: + name: migs_ba_built_environment_data + description: Data that comply with MigsBa combined with BuiltEnvironment + title: MigsBaBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_built_environment_data + range: MigsBaBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + food_animal_and_animal_feed_data: + name: food_animal_and_animal_feed_data + description: Data that comply with Extension FoodAnimalAndAnimalFeed + title: FoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:food_animal_and_animal_feed_data + range: FoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_animal_and_animal_feed_data: + name: migs_ba_food_animal_and_animal_feed_data + description: Data that comply with MigsBa combined with FoodAnimalAndAnimalFeed + title: MigsBaFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_food_animal_and_animal_feed_data + range: MigsBaFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + food_farm_environment_data: + name: food_farm_environment_data + description: Data that comply with Extension FoodFarmEnvironment + title: FoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:food_farm_environment_data + range: FoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_farm_environment_data: + name: migs_ba_food_farm_environment_data + description: Data that comply with MigsBa combined with FoodFarmEnvironment + title: MigsBaFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_food_farm_environment_data + range: MigsBaFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + food_food_production_facility_data: + name: food_food_production_facility_data + description: Data that comply with Extension FoodFoodProductionFacility + title: FoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:food_food_production_facility_data + range: FoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_food_production_facility_data: + name: migs_ba_food_food_production_facility_data + description: Data that comply with MigsBa combined with FoodFoodProductionFacility + title: MigsBaFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_food_food_production_facility_data + range: MigsBaFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + food_human_foods_data: + name: food_human_foods_data + description: Data that comply with Extension FoodHumanFoods + title: FoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:food_human_foods_data + range: FoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_human_foods_data: + name: migs_ba_food_human_foods_data + description: Data that comply with MigsBa combined with FoodHumanFoods + title: MigsBaFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_food_human_foods_data + range: MigsBaFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + host_associated_data: + name: host_associated_data + description: Data that comply with Extension HostAssociated + title: HostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:host_associated_data + range: HostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_host_associated_data: + name: migs_ba_host_associated_data + description: Data that comply with MigsBa combined with HostAssociated + title: MigsBaHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_host_associated_data + range: MigsBaHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + human_associated_data: + name: human_associated_data + description: Data that comply with Extension HumanAssociated + title: HumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:human_associated_data + range: HumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_associated_data: + name: migs_ba_human_associated_data + description: Data that comply with MigsBa combined with HumanAssociated + title: MigsBaHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_human_associated_data + range: MigsBaHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + human_gut_data: + name: human_gut_data + description: Data that comply with Extension HumanGut + title: HumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:human_gut_data + range: HumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_gut_data: + name: migs_ba_human_gut_data + description: Data that comply with MigsBa combined with HumanGut + title: MigsBaHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_human_gut_data + range: MigsBaHumanGut + multivalued: true + inlined: true + inlined_as_list: true + human_oral_data: + name: human_oral_data + description: Data that comply with Extension HumanOral + title: HumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:human_oral_data + range: HumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_oral_data: + name: migs_ba_human_oral_data + description: Data that comply with MigsBa combined with HumanOral + title: MigsBaHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_human_oral_data + range: MigsBaHumanOral + multivalued: true + inlined: true + inlined_as_list: true + human_skin_data: + name: human_skin_data + description: Data that comply with Extension HumanSkin + title: HumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:human_skin_data + range: HumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_skin_data: + name: migs_ba_human_skin_data + description: Data that comply with MigsBa combined with HumanSkin + title: MigsBaHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_human_skin_data + range: MigsBaHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + human_vaginal_data: + name: human_vaginal_data + description: Data that comply with Extension HumanVaginal + title: HumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:human_vaginal_data + range: HumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_vaginal_data: + name: migs_ba_human_vaginal_data + description: Data that comply with MigsBa combined with HumanVaginal + title: MigsBaHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_human_vaginal_data + range: MigsBaHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + hydrocarbon_resources_cores_data: + name: hydrocarbon_resources_cores_data + description: Data that comply with Extension HydrocarbonResourcesCores + title: HydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:hydrocarbon_resources_cores_data + range: HydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_hydrocarbon_resources_cores_data: + name: migs_ba_hydrocarbon_resources_cores_data + description: Data that comply with MigsBa combined with HydrocarbonResourcesCores + title: MigsBaHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_hydrocarbon_resources_cores_data + range: MigsBaHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + hydrocarbon_resources_fluids_swabs_data: + name: hydrocarbon_resources_fluids_swabs_data + description: Data that comply with Extension HydrocarbonResourcesFluidsSwabs + title: HydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:hydrocarbon_resources_fluids_swabs_data + range: HydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_hydrocarbon_resources_fluids_swabs_data: + name: migs_ba_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MigsBa combined with HydrocarbonResourcesFluidsSwabs + title: MigsBaHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_hydrocarbon_resources_fluids_swabs_data + range: MigsBaHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + microbial_mat_biofilm_data: + name: microbial_mat_biofilm_data + description: Data that comply with Extension MicrobialMatBiofilm + title: MicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:microbial_mat_biofilm_data + range: MicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_microbial_mat_biofilm_data: + name: migs_ba_microbial_mat_biofilm_data + description: Data that comply with MigsBa combined with MicrobialMatBiofilm + title: MigsBaMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_microbial_mat_biofilm_data + range: MigsBaMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + miscellaneous_natural_or_artificial_environment_data: + name: miscellaneous_natural_or_artificial_environment_data + description: Data that comply with Extension MiscellaneousNaturalOrArtificialEnvironment + title: MiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miscellaneous_natural_or_artificial_environment_data + range: MiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_miscellaneous_natural_or_artificial_environment_data: + name: migs_ba_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsBaMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_miscellaneous_natural_or_artificial_environment_data + range: MigsBaMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + plant_associated_data: + name: plant_associated_data + description: Data that comply with Extension PlantAssociated + title: PlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:plant_associated_data + range: PlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_plant_associated_data: + name: migs_ba_plant_associated_data + description: Data that comply with MigsBa combined with PlantAssociated + title: MigsBaPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_plant_associated_data + range: MigsBaPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + sediment_data: + name: sediment_data + description: Data that comply with Extension Sediment + title: Sediment data + from_schema: https://w3id.org/mixs + keywords: + - sediment + domain: MixsCompliantData + slot_uri: MIXS:sediment_data + range: Sediment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_sediment_data: + name: migs_ba_sediment_data + description: Data that comply with MigsBa combined with Sediment + title: MigsBaSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_sediment_data + range: MigsBaSediment + multivalued: true + inlined: true + inlined_as_list: true + soil_data: + name: soil_data + description: Data that comply with Extension Soil + title: Soil data + from_schema: https://w3id.org/mixs + keywords: + - soil + domain: MixsCompliantData + slot_uri: MIXS:soil_data + range: Soil + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_soil_data: + name: migs_ba_soil_data + description: Data that comply with MigsBa combined with Soil + title: MigsBaSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_soil_data + range: MigsBaSoil + multivalued: true + inlined: true + inlined_as_list: true + symbiont_associated_data: + name: symbiont_associated_data + description: Data that comply with Extension SymbiontAssociated + title: SymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:symbiont_associated_data + range: SymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_symbiont_associated_data: + name: migs_ba_symbiont_associated_data + description: Data that comply with MigsBa combined with SymbiontAssociated + title: MigsBaSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_symbiont_associated_data + range: MigsBaSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + wastewater_sludge_data: + name: wastewater_sludge_data + description: Data that comply with Extension WastewaterSludge + title: WastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:wastewater_sludge_data + range: WastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_wastewater_sludge_data: + name: migs_ba_wastewater_sludge_data + description: Data that comply with MigsBa combined with WastewaterSludge + title: MigsBaWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_wastewater_sludge_data + range: MigsBaWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + water_data: + name: water_data + description: Data that comply with Extension Water + title: Water data + from_schema: https://w3id.org/mixs + keywords: + - water + domain: MixsCompliantData + slot_uri: MIXS:water_data + range: Water + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_water_data: + name: migs_ba_water_data + description: Data that comply with MigsBa combined with Water + title: MigsBaWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_ba_water_data + range: MigsBaWater + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_data: + name: migs_eu_data + description: Data that comply with checklist MigsEu + title: MigsEu data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_data + range: MigsEu + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_agriculture_data: + name: migs_eu_agriculture_data + description: Data that comply with MigsEu combined with Agriculture + title: MigsEuAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_agriculture_data + range: MigsEuAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_air_data: + name: migs_eu_air_data + description: Data that comply with MigsEu combined with Air + title: MigsEuAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_air_data + range: MigsEuAir + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_built_environment_data: + name: migs_eu_built_environment_data + description: Data that comply with MigsEu combined with BuiltEnvironment + title: MigsEuBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_built_environment_data + range: MigsEuBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_animal_and_animal_feed_data: + name: migs_eu_food_animal_and_animal_feed_data + description: Data that comply with MigsEu combined with FoodAnimalAndAnimalFeed + title: MigsEuFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_food_animal_and_animal_feed_data + range: MigsEuFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_farm_environment_data: + name: migs_eu_food_farm_environment_data + description: Data that comply with MigsEu combined with FoodFarmEnvironment + title: MigsEuFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_food_farm_environment_data + range: MigsEuFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_food_production_facility_data: + name: migs_eu_food_food_production_facility_data + description: Data that comply with MigsEu combined with FoodFoodProductionFacility + title: MigsEuFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_food_food_production_facility_data + range: MigsEuFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_human_foods_data: + name: migs_eu_food_human_foods_data + description: Data that comply with MigsEu combined with FoodHumanFoods + title: MigsEuFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_food_human_foods_data + range: MigsEuFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_host_associated_data: + name: migs_eu_host_associated_data + description: Data that comply with MigsEu combined with HostAssociated + title: MigsEuHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_host_associated_data + range: MigsEuHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_associated_data: + name: migs_eu_human_associated_data + description: Data that comply with MigsEu combined with HumanAssociated + title: MigsEuHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_human_associated_data + range: MigsEuHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_gut_data: + name: migs_eu_human_gut_data + description: Data that comply with MigsEu combined with HumanGut + title: MigsEuHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_human_gut_data + range: MigsEuHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_oral_data: + name: migs_eu_human_oral_data + description: Data that comply with MigsEu combined with HumanOral + title: MigsEuHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_human_oral_data + range: MigsEuHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_skin_data: + name: migs_eu_human_skin_data + description: Data that comply with MigsEu combined with HumanSkin + title: MigsEuHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_human_skin_data + range: MigsEuHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_vaginal_data: + name: migs_eu_human_vaginal_data + description: Data that comply with MigsEu combined with HumanVaginal + title: MigsEuHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_human_vaginal_data + range: MigsEuHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_hydrocarbon_resources_cores_data: + name: migs_eu_hydrocarbon_resources_cores_data + description: Data that comply with MigsEu combined with HydrocarbonResourcesCores + title: MigsEuHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_hydrocarbon_resources_cores_data + range: MigsEuHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_hydrocarbon_resources_fluids_swabs_data: + name: migs_eu_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MigsEu combined with HydrocarbonResourcesFluidsSwabs + title: MigsEuHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_hydrocarbon_resources_fluids_swabs_data + range: MigsEuHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_microbial_mat_biofilm_data: + name: migs_eu_microbial_mat_biofilm_data + description: Data that comply with MigsEu combined with MicrobialMatBiofilm + title: MigsEuMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_microbial_mat_biofilm_data + range: MigsEuMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_miscellaneous_natural_or_artificial_environment_data: + name: migs_eu_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsEuMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_miscellaneous_natural_or_artificial_environment_data + range: MigsEuMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_plant_associated_data: + name: migs_eu_plant_associated_data + description: Data that comply with MigsEu combined with PlantAssociated + title: MigsEuPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_plant_associated_data + range: MigsEuPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_sediment_data: + name: migs_eu_sediment_data + description: Data that comply with MigsEu combined with Sediment + title: MigsEuSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_sediment_data + range: MigsEuSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_soil_data: + name: migs_eu_soil_data + description: Data that comply with MigsEu combined with Soil + title: MigsEuSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_soil_data + range: MigsEuSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_symbiont_associated_data: + name: migs_eu_symbiont_associated_data + description: Data that comply with MigsEu combined with SymbiontAssociated + title: MigsEuSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_symbiont_associated_data + range: MigsEuSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_wastewater_sludge_data: + name: migs_eu_wastewater_sludge_data + description: Data that comply with MigsEu combined with WastewaterSludge + title: MigsEuWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_wastewater_sludge_data + range: MigsEuWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_water_data: + name: migs_eu_water_data + description: Data that comply with MigsEu combined with Water + title: MigsEuWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_eu_water_data + range: MigsEuWater + multivalued: true + inlined: true + inlined_as_list: true + migs_org_data: + name: migs_org_data + description: Data that comply with checklist MigsOrg + title: MigsOrg data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_data + range: MigsOrg + multivalued: true + inlined: true + inlined_as_list: true + migs_org_agriculture_data: + name: migs_org_agriculture_data + description: Data that comply with MigsOrg combined with Agriculture + title: MigsOrgAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_agriculture_data + range: MigsOrgAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_org_air_data: + name: migs_org_air_data + description: Data that comply with MigsOrg combined with Air + title: MigsOrgAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_air_data + range: MigsOrgAir + multivalued: true + inlined: true + inlined_as_list: true + migs_org_built_environment_data: + name: migs_org_built_environment_data + description: Data that comply with MigsOrg combined with BuiltEnvironment + title: MigsOrgBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_built_environment_data + range: MigsOrgBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_animal_and_animal_feed_data: + name: migs_org_food_animal_and_animal_feed_data + description: Data that comply with MigsOrg combined with FoodAnimalAndAnimalFeed + title: MigsOrgFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_food_animal_and_animal_feed_data + range: MigsOrgFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_farm_environment_data: + name: migs_org_food_farm_environment_data + description: Data that comply with MigsOrg combined with FoodFarmEnvironment + title: MigsOrgFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_food_farm_environment_data + range: MigsOrgFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_food_production_facility_data: + name: migs_org_food_food_production_facility_data + description: Data that comply with MigsOrg combined with FoodFoodProductionFacility + title: MigsOrgFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_food_food_production_facility_data + range: MigsOrgFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_human_foods_data: + name: migs_org_food_human_foods_data + description: Data that comply with MigsOrg combined with FoodHumanFoods + title: MigsOrgFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_food_human_foods_data + range: MigsOrgFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_org_host_associated_data: + name: migs_org_host_associated_data + description: Data that comply with MigsOrg combined with HostAssociated + title: MigsOrgHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_host_associated_data + range: MigsOrgHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_associated_data: + name: migs_org_human_associated_data + description: Data that comply with MigsOrg combined with HumanAssociated + title: MigsOrgHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_human_associated_data + range: MigsOrgHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_gut_data: + name: migs_org_human_gut_data + description: Data that comply with MigsOrg combined with HumanGut + title: MigsOrgHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_human_gut_data + range: MigsOrgHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_oral_data: + name: migs_org_human_oral_data + description: Data that comply with MigsOrg combined with HumanOral + title: MigsOrgHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_human_oral_data + range: MigsOrgHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_skin_data: + name: migs_org_human_skin_data + description: Data that comply with MigsOrg combined with HumanSkin + title: MigsOrgHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_human_skin_data + range: MigsOrgHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_vaginal_data: + name: migs_org_human_vaginal_data + description: Data that comply with MigsOrg combined with HumanVaginal + title: MigsOrgHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_human_vaginal_data + range: MigsOrgHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_org_hydrocarbon_resources_cores_data: + name: migs_org_hydrocarbon_resources_cores_data + description: Data that comply with MigsOrg combined with HydrocarbonResourcesCores + title: MigsOrgHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_hydrocarbon_resources_cores_data + range: MigsOrgHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_org_hydrocarbon_resources_fluids_swabs_data: + name: migs_org_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MigsOrg combined with HydrocarbonResourcesFluidsSwabs + title: MigsOrgHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_hydrocarbon_resources_fluids_swabs_data + range: MigsOrgHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_org_microbial_mat_biofilm_data: + name: migs_org_microbial_mat_biofilm_data + description: Data that comply with MigsOrg combined with MicrobialMatBiofilm + title: MigsOrgMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_microbial_mat_biofilm_data + range: MigsOrgMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_org_miscellaneous_natural_or_artificial_environment_data: + name: migs_org_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsOrgMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_miscellaneous_natural_or_artificial_environment_data + range: MigsOrgMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_plant_associated_data: + name: migs_org_plant_associated_data + description: Data that comply with MigsOrg combined with PlantAssociated + title: MigsOrgPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_plant_associated_data + range: MigsOrgPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_sediment_data: + name: migs_org_sediment_data + description: Data that comply with MigsOrg combined with Sediment + title: MigsOrgSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_sediment_data + range: MigsOrgSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_soil_data: + name: migs_org_soil_data + description: Data that comply with MigsOrg combined with Soil + title: MigsOrgSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_soil_data + range: MigsOrgSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_org_symbiont_associated_data: + name: migs_org_symbiont_associated_data + description: Data that comply with MigsOrg combined with SymbiontAssociated + title: MigsOrgSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_symbiont_associated_data + range: MigsOrgSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_wastewater_sludge_data: + name: migs_org_wastewater_sludge_data + description: Data that comply with MigsOrg combined with WastewaterSludge + title: MigsOrgWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_wastewater_sludge_data + range: MigsOrgWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_org_water_data: + name: migs_org_water_data + description: Data that comply with MigsOrg combined with Water + title: MigsOrgWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_org_water_data + range: MigsOrgWater + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_data: + name: migs_pl_data + description: Data that comply with checklist MigsPl + title: MigsPl data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_data + range: MigsPl + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_agriculture_data: + name: migs_pl_agriculture_data + description: Data that comply with MigsPl combined with Agriculture + title: MigsPlAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_agriculture_data + range: MigsPlAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_air_data: + name: migs_pl_air_data + description: Data that comply with MigsPl combined with Air + title: MigsPlAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_air_data + range: MigsPlAir + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_built_environment_data: + name: migs_pl_built_environment_data + description: Data that comply with MigsPl combined with BuiltEnvironment + title: MigsPlBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_built_environment_data + range: MigsPlBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_animal_and_animal_feed_data: + name: migs_pl_food_animal_and_animal_feed_data + description: Data that comply with MigsPl combined with FoodAnimalAndAnimalFeed + title: MigsPlFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_food_animal_and_animal_feed_data + range: MigsPlFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_farm_environment_data: + name: migs_pl_food_farm_environment_data + description: Data that comply with MigsPl combined with FoodFarmEnvironment + title: MigsPlFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_food_farm_environment_data + range: MigsPlFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_food_production_facility_data: + name: migs_pl_food_food_production_facility_data + description: Data that comply with MigsPl combined with FoodFoodProductionFacility + title: MigsPlFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_food_food_production_facility_data + range: MigsPlFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_human_foods_data: + name: migs_pl_food_human_foods_data + description: Data that comply with MigsPl combined with FoodHumanFoods + title: MigsPlFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_food_human_foods_data + range: MigsPlFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_host_associated_data: + name: migs_pl_host_associated_data + description: Data that comply with MigsPl combined with HostAssociated + title: MigsPlHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_host_associated_data + range: MigsPlHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_associated_data: + name: migs_pl_human_associated_data + description: Data that comply with MigsPl combined with HumanAssociated + title: MigsPlHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_human_associated_data + range: MigsPlHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_gut_data: + name: migs_pl_human_gut_data + description: Data that comply with MigsPl combined with HumanGut + title: MigsPlHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_human_gut_data + range: MigsPlHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_oral_data: + name: migs_pl_human_oral_data + description: Data that comply with MigsPl combined with HumanOral + title: MigsPlHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_human_oral_data + range: MigsPlHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_skin_data: + name: migs_pl_human_skin_data + description: Data that comply with MigsPl combined with HumanSkin + title: MigsPlHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_human_skin_data + range: MigsPlHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_vaginal_data: + name: migs_pl_human_vaginal_data + description: Data that comply with MigsPl combined with HumanVaginal + title: MigsPlHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_human_vaginal_data + range: MigsPlHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_hydrocarbon_resources_cores_data: + name: migs_pl_hydrocarbon_resources_cores_data + description: Data that comply with MigsPl combined with HydrocarbonResourcesCores + title: MigsPlHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_hydrocarbon_resources_cores_data + range: MigsPlHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_hydrocarbon_resources_fluids_swabs_data: + name: migs_pl_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MigsPl combined with HydrocarbonResourcesFluidsSwabs + title: MigsPlHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_hydrocarbon_resources_fluids_swabs_data + range: MigsPlHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_microbial_mat_biofilm_data: + name: migs_pl_microbial_mat_biofilm_data + description: Data that comply with MigsPl combined with MicrobialMatBiofilm + title: MigsPlMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_microbial_mat_biofilm_data + range: MigsPlMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_miscellaneous_natural_or_artificial_environment_data: + name: migs_pl_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsPlMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_miscellaneous_natural_or_artificial_environment_data + range: MigsPlMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_plant_associated_data: + name: migs_pl_plant_associated_data + description: Data that comply with MigsPl combined with PlantAssociated + title: MigsPlPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_plant_associated_data + range: MigsPlPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_sediment_data: + name: migs_pl_sediment_data + description: Data that comply with MigsPl combined with Sediment + title: MigsPlSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_sediment_data + range: MigsPlSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_soil_data: + name: migs_pl_soil_data + description: Data that comply with MigsPl combined with Soil + title: MigsPlSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_soil_data + range: MigsPlSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_symbiont_associated_data: + name: migs_pl_symbiont_associated_data + description: Data that comply with MigsPl combined with SymbiontAssociated + title: MigsPlSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_symbiont_associated_data + range: MigsPlSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_wastewater_sludge_data: + name: migs_pl_wastewater_sludge_data + description: Data that comply with MigsPl combined with WastewaterSludge + title: MigsPlWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_wastewater_sludge_data + range: MigsPlWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_water_data: + name: migs_pl_water_data + description: Data that comply with MigsPl combined with Water + title: MigsPlWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_pl_water_data + range: MigsPlWater + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_data: + name: migs_vi_data + description: Data that comply with checklist MigsVi + title: MigsVi data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_data + range: MigsVi + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_agriculture_data: + name: migs_vi_agriculture_data + description: Data that comply with MigsVi combined with Agriculture + title: MigsViAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_agriculture_data + range: MigsViAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_air_data: + name: migs_vi_air_data + description: Data that comply with MigsVi combined with Air + title: MigsViAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_air_data + range: MigsViAir + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_built_environment_data: + name: migs_vi_built_environment_data + description: Data that comply with MigsVi combined with BuiltEnvironment + title: MigsViBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_built_environment_data + range: MigsViBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_animal_and_animal_feed_data: + name: migs_vi_food_animal_and_animal_feed_data + description: Data that comply with MigsVi combined with FoodAnimalAndAnimalFeed + title: MigsViFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_food_animal_and_animal_feed_data + range: MigsViFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_farm_environment_data: + name: migs_vi_food_farm_environment_data + description: Data that comply with MigsVi combined with FoodFarmEnvironment + title: MigsViFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_food_farm_environment_data + range: MigsViFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_food_production_facility_data: + name: migs_vi_food_food_production_facility_data + description: Data that comply with MigsVi combined with FoodFoodProductionFacility + title: MigsViFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_food_food_production_facility_data + range: MigsViFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_human_foods_data: + name: migs_vi_food_human_foods_data + description: Data that comply with MigsVi combined with FoodHumanFoods + title: MigsViFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_food_human_foods_data + range: MigsViFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_host_associated_data: + name: migs_vi_host_associated_data + description: Data that comply with MigsVi combined with HostAssociated + title: MigsViHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_host_associated_data + range: MigsViHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_associated_data: + name: migs_vi_human_associated_data + description: Data that comply with MigsVi combined with HumanAssociated + title: MigsViHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_human_associated_data + range: MigsViHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_gut_data: + name: migs_vi_human_gut_data + description: Data that comply with MigsVi combined with HumanGut + title: MigsViHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_human_gut_data + range: MigsViHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_oral_data: + name: migs_vi_human_oral_data + description: Data that comply with MigsVi combined with HumanOral + title: MigsViHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_human_oral_data + range: MigsViHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_skin_data: + name: migs_vi_human_skin_data + description: Data that comply with MigsVi combined with HumanSkin + title: MigsViHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_human_skin_data + range: MigsViHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_vaginal_data: + name: migs_vi_human_vaginal_data + description: Data that comply with MigsVi combined with HumanVaginal + title: MigsViHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_human_vaginal_data + range: MigsViHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_hydrocarbon_resources_cores_data: + name: migs_vi_hydrocarbon_resources_cores_data + description: Data that comply with MigsVi combined with HydrocarbonResourcesCores + title: MigsViHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_hydrocarbon_resources_cores_data + range: MigsViHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_hydrocarbon_resources_fluids_swabs_data: + name: migs_vi_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MigsVi combined with HydrocarbonResourcesFluidsSwabs + title: MigsViHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_hydrocarbon_resources_fluids_swabs_data + range: MigsViHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_microbial_mat_biofilm_data: + name: migs_vi_microbial_mat_biofilm_data + description: Data that comply with MigsVi combined with MicrobialMatBiofilm + title: MigsViMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_microbial_mat_biofilm_data + range: MigsViMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_miscellaneous_natural_or_artificial_environment_data: + name: migs_vi_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsViMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_miscellaneous_natural_or_artificial_environment_data + range: MigsViMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_plant_associated_data: + name: migs_vi_plant_associated_data + description: Data that comply with MigsVi combined with PlantAssociated + title: MigsViPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_plant_associated_data + range: MigsViPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_sediment_data: + name: migs_vi_sediment_data + description: Data that comply with MigsVi combined with Sediment + title: MigsViSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_sediment_data + range: MigsViSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_soil_data: + name: migs_vi_soil_data + description: Data that comply with MigsVi combined with Soil + title: MigsViSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_soil_data + range: MigsViSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_symbiont_associated_data: + name: migs_vi_symbiont_associated_data + description: Data that comply with MigsVi combined with SymbiontAssociated + title: MigsViSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_symbiont_associated_data + range: MigsViSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_wastewater_sludge_data: + name: migs_vi_wastewater_sludge_data + description: Data that comply with MigsVi combined with WastewaterSludge + title: MigsViWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_wastewater_sludge_data + range: MigsViWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_water_data: + name: migs_vi_water_data + description: Data that comply with MigsVi combined with Water + title: MigsViWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:migs_vi_water_data + range: MigsViWater + multivalued: true + inlined: true + inlined_as_list: true + mimag_data: + name: mimag_data + description: Data that comply with checklist Mimag + title: Mimag data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_data + range: Mimag + multivalued: true + inlined: true + inlined_as_list: true + mimag_agriculture_data: + name: mimag_agriculture_data + description: Data that comply with Mimag combined with Agriculture + title: MimagAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_agriculture_data + range: MimagAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mimag_air_data: + name: mimag_air_data + description: Data that comply with Mimag combined with Air + title: MimagAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_air_data + range: MimagAir + multivalued: true + inlined: true + inlined_as_list: true + mimag_built_environment_data: + name: mimag_built_environment_data + description: Data that comply with Mimag combined with BuiltEnvironment + title: MimagBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_built_environment_data + range: MimagBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_animal_and_animal_feed_data: + name: mimag_food_animal_and_animal_feed_data + description: Data that comply with Mimag combined with FoodAnimalAndAnimalFeed + title: MimagFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_food_animal_and_animal_feed_data + range: MimagFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_farm_environment_data: + name: mimag_food_farm_environment_data + description: Data that comply with Mimag combined with FoodFarmEnvironment + title: MimagFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_food_farm_environment_data + range: MimagFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_food_production_facility_data: + name: mimag_food_food_production_facility_data + description: Data that comply with Mimag combined with FoodFoodProductionFacility + title: MimagFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_food_food_production_facility_data + range: MimagFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_human_foods_data: + name: mimag_food_human_foods_data + description: Data that comply with Mimag combined with FoodHumanFoods + title: MimagFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_food_human_foods_data + range: MimagFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mimag_host_associated_data: + name: mimag_host_associated_data + description: Data that comply with Mimag combined with HostAssociated + title: MimagHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_host_associated_data + range: MimagHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_associated_data: + name: mimag_human_associated_data + description: Data that comply with Mimag combined with HumanAssociated + title: MimagHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_human_associated_data + range: MimagHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_gut_data: + name: mimag_human_gut_data + description: Data that comply with Mimag combined with HumanGut + title: MimagHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_human_gut_data + range: MimagHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_oral_data: + name: mimag_human_oral_data + description: Data that comply with Mimag combined with HumanOral + title: MimagHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_human_oral_data + range: MimagHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_skin_data: + name: mimag_human_skin_data + description: Data that comply with Mimag combined with HumanSkin + title: MimagHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_human_skin_data + range: MimagHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_vaginal_data: + name: mimag_human_vaginal_data + description: Data that comply with Mimag combined with HumanVaginal + title: MimagHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_human_vaginal_data + range: MimagHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mimag_hydrocarbon_resources_cores_data: + name: mimag_hydrocarbon_resources_cores_data + description: Data that comply with Mimag combined with HydrocarbonResourcesCores + title: MimagHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_hydrocarbon_resources_cores_data + range: MimagHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mimag_hydrocarbon_resources_fluids_swabs_data: + name: mimag_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with Mimag combined with HydrocarbonResourcesFluidsSwabs + title: MimagHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_hydrocarbon_resources_fluids_swabs_data + range: MimagHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mimag_microbial_mat_biofilm_data: + name: mimag_microbial_mat_biofilm_data + description: Data that comply with Mimag combined with MicrobialMatBiofilm + title: MimagMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_microbial_mat_biofilm_data + range: MimagMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mimag_miscellaneous_natural_or_artificial_environment_data: + name: mimag_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with Mimag combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimagMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_miscellaneous_natural_or_artificial_environment_data + range: MimagMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimag_plant_associated_data: + name: mimag_plant_associated_data + description: Data that comply with Mimag combined with PlantAssociated + title: MimagPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_plant_associated_data + range: MimagPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_sediment_data: + name: mimag_sediment_data + description: Data that comply with Mimag combined with Sediment + title: MimagSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_sediment_data + range: MimagSediment + multivalued: true + inlined: true + inlined_as_list: true + mimag_soil_data: + name: mimag_soil_data + description: Data that comply with Mimag combined with Soil + title: MimagSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_soil_data + range: MimagSoil + multivalued: true + inlined: true + inlined_as_list: true + mimag_symbiont_associated_data: + name: mimag_symbiont_associated_data + description: Data that comply with Mimag combined with SymbiontAssociated + title: MimagSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_symbiont_associated_data + range: MimagSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_wastewater_sludge_data: + name: mimag_wastewater_sludge_data + description: Data that comply with Mimag combined with WastewaterSludge + title: MimagWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_wastewater_sludge_data + range: MimagWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mimag_water_data: + name: mimag_water_data + description: Data that comply with Mimag combined with Water + title: MimagWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimag_water_data + range: MimagWater + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_data: + name: mimarks_c_data + description: Data that comply with checklist MimarksC + title: MimarksC data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_data + range: MimarksC + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_agriculture_data: + name: mimarks_c_agriculture_data + description: Data that comply with MimarksC combined with Agriculture + title: MimarksCAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_agriculture_data + range: MimarksCAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_air_data: + name: mimarks_c_air_data + description: Data that comply with MimarksC combined with Air + title: MimarksCAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_air_data + range: MimarksCAir + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_built_environment_data: + name: mimarks_c_built_environment_data + description: Data that comply with MimarksC combined with BuiltEnvironment + title: MimarksCBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_built_environment_data + range: MimarksCBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_animal_and_animal_feed_data: + name: mimarks_c_food_animal_and_animal_feed_data + description: Data that comply with MimarksC combined with FoodAnimalAndAnimalFeed + title: MimarksCFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_food_animal_and_animal_feed_data + range: MimarksCFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_farm_environment_data: + name: mimarks_c_food_farm_environment_data + description: Data that comply with MimarksC combined with FoodFarmEnvironment + title: MimarksCFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_food_farm_environment_data + range: MimarksCFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_food_production_facility_data: + name: mimarks_c_food_food_production_facility_data + description: Data that comply with MimarksC combined with FoodFoodProductionFacility + title: MimarksCFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_food_food_production_facility_data + range: MimarksCFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_human_foods_data: + name: mimarks_c_food_human_foods_data + description: Data that comply with MimarksC combined with FoodHumanFoods + title: MimarksCFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_food_human_foods_data + range: MimarksCFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_host_associated_data: + name: mimarks_c_host_associated_data + description: Data that comply with MimarksC combined with HostAssociated + title: MimarksCHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_host_associated_data + range: MimarksCHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_associated_data: + name: mimarks_c_human_associated_data + description: Data that comply with MimarksC combined with HumanAssociated + title: MimarksCHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_human_associated_data + range: MimarksCHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_gut_data: + name: mimarks_c_human_gut_data + description: Data that comply with MimarksC combined with HumanGut + title: MimarksCHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_human_gut_data + range: MimarksCHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_oral_data: + name: mimarks_c_human_oral_data + description: Data that comply with MimarksC combined with HumanOral + title: MimarksCHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_human_oral_data + range: MimarksCHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_skin_data: + name: mimarks_c_human_skin_data + description: Data that comply with MimarksC combined with HumanSkin + title: MimarksCHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_human_skin_data + range: MimarksCHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_vaginal_data: + name: mimarks_c_human_vaginal_data + description: Data that comply with MimarksC combined with HumanVaginal + title: MimarksCHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_human_vaginal_data + range: MimarksCHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_hydrocarbon_resources_cores_data: + name: mimarks_c_hydrocarbon_resources_cores_data + description: Data that comply with MimarksC combined with HydrocarbonResourcesCores + title: MimarksCHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_hydrocarbon_resources_cores_data + range: MimarksCHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_hydrocarbon_resources_fluids_swabs_data: + name: mimarks_c_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MimarksC combined with HydrocarbonResourcesFluidsSwabs + title: MimarksCHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_hydrocarbon_resources_fluids_swabs_data + range: MimarksCHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_microbial_mat_biofilm_data: + name: mimarks_c_microbial_mat_biofilm_data + description: Data that comply with MimarksC combined with MicrobialMatBiofilm + title: MimarksCMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_microbial_mat_biofilm_data + range: MimarksCMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_miscellaneous_natural_or_artificial_environment_data: + name: mimarks_c_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimarksCMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_miscellaneous_natural_or_artificial_environment_data + range: MimarksCMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_plant_associated_data: + name: mimarks_c_plant_associated_data + description: Data that comply with MimarksC combined with PlantAssociated + title: MimarksCPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_plant_associated_data + range: MimarksCPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_sediment_data: + name: mimarks_c_sediment_data + description: Data that comply with MimarksC combined with Sediment + title: MimarksCSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_sediment_data + range: MimarksCSediment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_soil_data: + name: mimarks_c_soil_data + description: Data that comply with MimarksC combined with Soil + title: MimarksCSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_soil_data + range: MimarksCSoil + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_symbiont_associated_data: + name: mimarks_c_symbiont_associated_data + description: Data that comply with MimarksC combined with SymbiontAssociated + title: MimarksCSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_symbiont_associated_data + range: MimarksCSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_wastewater_sludge_data: + name: mimarks_c_wastewater_sludge_data + description: Data that comply with MimarksC combined with WastewaterSludge + title: MimarksCWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_wastewater_sludge_data + range: MimarksCWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_water_data: + name: mimarks_c_water_data + description: Data that comply with MimarksC combined with Water + title: MimarksCWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_c_water_data + range: MimarksCWater + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_data: + name: mimarks_s_data + description: Data that comply with checklist MimarksS + title: MimarksS data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_data + range: MimarksS + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_agriculture_data: + name: mimarks_s_agriculture_data + description: Data that comply with MimarksS combined with Agriculture + title: MimarksSAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_agriculture_data + range: MimarksSAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_air_data: + name: mimarks_s_air_data + description: Data that comply with MimarksS combined with Air + title: MimarksSAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_air_data + range: MimarksSAir + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_built_environment_data: + name: mimarks_s_built_environment_data + description: Data that comply with MimarksS combined with BuiltEnvironment + title: MimarksSBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_built_environment_data + range: MimarksSBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_animal_and_animal_feed_data: + name: mimarks_s_food_animal_and_animal_feed_data + description: Data that comply with MimarksS combined with FoodAnimalAndAnimalFeed + title: MimarksSFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_food_animal_and_animal_feed_data + range: MimarksSFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_farm_environment_data: + name: mimarks_s_food_farm_environment_data + description: Data that comply with MimarksS combined with FoodFarmEnvironment + title: MimarksSFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_food_farm_environment_data + range: MimarksSFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_food_production_facility_data: + name: mimarks_s_food_food_production_facility_data + description: Data that comply with MimarksS combined with FoodFoodProductionFacility + title: MimarksSFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_food_food_production_facility_data + range: MimarksSFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_human_foods_data: + name: mimarks_s_food_human_foods_data + description: Data that comply with MimarksS combined with FoodHumanFoods + title: MimarksSFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_food_human_foods_data + range: MimarksSFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_host_associated_data: + name: mimarks_s_host_associated_data + description: Data that comply with MimarksS combined with HostAssociated + title: MimarksSHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_host_associated_data + range: MimarksSHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_associated_data: + name: mimarks_s_human_associated_data + description: Data that comply with MimarksS combined with HumanAssociated + title: MimarksSHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_human_associated_data + range: MimarksSHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_gut_data: + name: mimarks_s_human_gut_data + description: Data that comply with MimarksS combined with HumanGut + title: MimarksSHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_human_gut_data + range: MimarksSHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_oral_data: + name: mimarks_s_human_oral_data + description: Data that comply with MimarksS combined with HumanOral + title: MimarksSHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_human_oral_data + range: MimarksSHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_skin_data: + name: mimarks_s_human_skin_data + description: Data that comply with MimarksS combined with HumanSkin + title: MimarksSHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_human_skin_data + range: MimarksSHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_vaginal_data: + name: mimarks_s_human_vaginal_data + description: Data that comply with MimarksS combined with HumanVaginal + title: MimarksSHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_human_vaginal_data + range: MimarksSHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_hydrocarbon_resources_cores_data: + name: mimarks_s_hydrocarbon_resources_cores_data + description: Data that comply with MimarksS combined with HydrocarbonResourcesCores + title: MimarksSHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_hydrocarbon_resources_cores_data + range: MimarksSHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_hydrocarbon_resources_fluids_swabs_data: + name: mimarks_s_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with MimarksS combined with HydrocarbonResourcesFluidsSwabs + title: MimarksSHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_hydrocarbon_resources_fluids_swabs_data + range: MimarksSHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_microbial_mat_biofilm_data: + name: mimarks_s_microbial_mat_biofilm_data + description: Data that comply with MimarksS combined with MicrobialMatBiofilm + title: MimarksSMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_microbial_mat_biofilm_data + range: MimarksSMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_miscellaneous_natural_or_artificial_environment_data: + name: mimarks_s_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimarksSMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_miscellaneous_natural_or_artificial_environment_data + range: MimarksSMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_plant_associated_data: + name: mimarks_s_plant_associated_data + description: Data that comply with MimarksS combined with PlantAssociated + title: MimarksSPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_plant_associated_data + range: MimarksSPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_sediment_data: + name: mimarks_s_sediment_data + description: Data that comply with MimarksS combined with Sediment + title: MimarksSSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_sediment_data + range: MimarksSSediment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_soil_data: + name: mimarks_s_soil_data + description: Data that comply with MimarksS combined with Soil + title: MimarksSSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_soil_data + range: MimarksSSoil + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_symbiont_associated_data: + name: mimarks_s_symbiont_associated_data + description: Data that comply with MimarksS combined with SymbiontAssociated + title: MimarksSSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_symbiont_associated_data + range: MimarksSSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_wastewater_sludge_data: + name: mimarks_s_wastewater_sludge_data + description: Data that comply with MimarksS combined with WastewaterSludge + title: MimarksSWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_wastewater_sludge_data + range: MimarksSWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_water_data: + name: mimarks_s_water_data + description: Data that comply with MimarksS combined with Water + title: MimarksSWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mimarks_s_water_data + range: MimarksSWater + multivalued: true + inlined: true + inlined_as_list: true + mims_data: + name: mims_data + description: Data that comply with checklist Mims + title: Mims data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_data + range: Mims + multivalued: true + inlined: true + inlined_as_list: true + mims_agriculture_data: + name: mims_agriculture_data + description: Data that comply with Mims combined with Agriculture + title: MimsAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_agriculture_data + range: MimsAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mims_air_data: + name: mims_air_data + description: Data that comply with Mims combined with Air + title: MimsAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_air_data + range: MimsAir + multivalued: true + inlined: true + inlined_as_list: true + mims_built_environment_data: + name: mims_built_environment_data + description: Data that comply with Mims combined with BuiltEnvironment + title: MimsBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_built_environment_data + range: MimsBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mims_food_animal_and_animal_feed_data: + name: mims_food_animal_and_animal_feed_data + description: Data that comply with Mims combined with FoodAnimalAndAnimalFeed + title: MimsFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_food_animal_and_animal_feed_data + range: MimsFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mims_food_farm_environment_data: + name: mims_food_farm_environment_data + description: Data that comply with Mims combined with FoodFarmEnvironment + title: MimsFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_food_farm_environment_data + range: MimsFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mims_food_food_production_facility_data: + name: mims_food_food_production_facility_data + description: Data that comply with Mims combined with FoodFoodProductionFacility + title: MimsFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_food_food_production_facility_data + range: MimsFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mims_food_human_foods_data: + name: mims_food_human_foods_data + description: Data that comply with Mims combined with FoodHumanFoods + title: MimsFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_food_human_foods_data + range: MimsFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mims_host_associated_data: + name: mims_host_associated_data + description: Data that comply with Mims combined with HostAssociated + title: MimsHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_host_associated_data + range: MimsHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_human_associated_data: + name: mims_human_associated_data + description: Data that comply with Mims combined with HumanAssociated + title: MimsHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_human_associated_data + range: MimsHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_human_gut_data: + name: mims_human_gut_data + description: Data that comply with Mims combined with HumanGut + title: MimsHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_human_gut_data + range: MimsHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mims_human_oral_data: + name: mims_human_oral_data + description: Data that comply with Mims combined with HumanOral + title: MimsHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_human_oral_data + range: MimsHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mims_human_skin_data: + name: mims_human_skin_data + description: Data that comply with Mims combined with HumanSkin + title: MimsHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_human_skin_data + range: MimsHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mims_human_vaginal_data: + name: mims_human_vaginal_data + description: Data that comply with Mims combined with HumanVaginal + title: MimsHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_human_vaginal_data + range: MimsHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mims_hydrocarbon_resources_cores_data: + name: mims_hydrocarbon_resources_cores_data + description: Data that comply with Mims combined with HydrocarbonResourcesCores + title: MimsHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_hydrocarbon_resources_cores_data + range: MimsHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mims_hydrocarbon_resources_fluids_swabs_data: + name: mims_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with Mims combined with HydrocarbonResourcesFluidsSwabs + title: MimsHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_hydrocarbon_resources_fluids_swabs_data + range: MimsHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mims_microbial_mat_biofilm_data: + name: mims_microbial_mat_biofilm_data + description: Data that comply with Mims combined with MicrobialMatBiofilm + title: MimsMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_microbial_mat_biofilm_data + range: MimsMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mims_miscellaneous_natural_or_artificial_environment_data: + name: mims_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with Mims combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimsMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_miscellaneous_natural_or_artificial_environment_data + range: MimsMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mims_plant_associated_data: + name: mims_plant_associated_data + description: Data that comply with Mims combined with PlantAssociated + title: MimsPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_plant_associated_data + range: MimsPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_sediment_data: + name: mims_sediment_data + description: Data that comply with Mims combined with Sediment + title: MimsSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_sediment_data + range: MimsSediment + multivalued: true + inlined: true + inlined_as_list: true + mims_soil_data: + name: mims_soil_data + description: Data that comply with Mims combined with Soil + title: MimsSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_soil_data + range: MimsSoil + multivalued: true + inlined: true + inlined_as_list: true + mims_symbiont_associated_data: + name: mims_symbiont_associated_data + description: Data that comply with Mims combined with SymbiontAssociated + title: MimsSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_symbiont_associated_data + range: MimsSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_wastewater_sludge_data: + name: mims_wastewater_sludge_data + description: Data that comply with Mims combined with WastewaterSludge + title: MimsWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_wastewater_sludge_data + range: MimsWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mims_water_data: + name: mims_water_data + description: Data that comply with Mims combined with Water + title: MimsWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:mims_water_data + range: MimsWater + multivalued: true + inlined: true + inlined_as_list: true + misag_data: + name: misag_data + description: Data that comply with checklist Misag + title: Misag data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_data + range: Misag + multivalued: true + inlined: true + inlined_as_list: true + misag_agriculture_data: + name: misag_agriculture_data + description: Data that comply with Misag combined with Agriculture + title: MisagAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_agriculture_data + range: MisagAgriculture + multivalued: true + inlined: true + inlined_as_list: true + misag_air_data: + name: misag_air_data + description: Data that comply with Misag combined with Air + title: MisagAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_air_data + range: MisagAir + multivalued: true + inlined: true + inlined_as_list: true + misag_built_environment_data: + name: misag_built_environment_data + description: Data that comply with Misag combined with BuiltEnvironment + title: MisagBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_built_environment_data + range: MisagBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + misag_food_animal_and_animal_feed_data: + name: misag_food_animal_and_animal_feed_data + description: Data that comply with Misag combined with FoodAnimalAndAnimalFeed + title: MisagFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_food_animal_and_animal_feed_data + range: MisagFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + misag_food_farm_environment_data: + name: misag_food_farm_environment_data + description: Data that comply with Misag combined with FoodFarmEnvironment + title: MisagFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_food_farm_environment_data + range: MisagFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + misag_food_food_production_facility_data: + name: misag_food_food_production_facility_data + description: Data that comply with Misag combined with FoodFoodProductionFacility + title: MisagFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_food_food_production_facility_data + range: MisagFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + misag_food_human_foods_data: + name: misag_food_human_foods_data + description: Data that comply with Misag combined with FoodHumanFoods + title: MisagFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_food_human_foods_data + range: MisagFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + misag_host_associated_data: + name: misag_host_associated_data + description: Data that comply with Misag combined with HostAssociated + title: MisagHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_host_associated_data + range: MisagHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_human_associated_data: + name: misag_human_associated_data + description: Data that comply with Misag combined with HumanAssociated + title: MisagHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_human_associated_data + range: MisagHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_human_gut_data: + name: misag_human_gut_data + description: Data that comply with Misag combined with HumanGut + title: MisagHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_human_gut_data + range: MisagHumanGut + multivalued: true + inlined: true + inlined_as_list: true + misag_human_oral_data: + name: misag_human_oral_data + description: Data that comply with Misag combined with HumanOral + title: MisagHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_human_oral_data + range: MisagHumanOral + multivalued: true + inlined: true + inlined_as_list: true + misag_human_skin_data: + name: misag_human_skin_data + description: Data that comply with Misag combined with HumanSkin + title: MisagHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_human_skin_data + range: MisagHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + misag_human_vaginal_data: + name: misag_human_vaginal_data + description: Data that comply with Misag combined with HumanVaginal + title: MisagHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_human_vaginal_data + range: MisagHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + misag_hydrocarbon_resources_cores_data: + name: misag_hydrocarbon_resources_cores_data + description: Data that comply with Misag combined with HydrocarbonResourcesCores + title: MisagHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_hydrocarbon_resources_cores_data + range: MisagHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + misag_hydrocarbon_resources_fluids_swabs_data: + name: misag_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with Misag combined with HydrocarbonResourcesFluidsSwabs + title: MisagHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_hydrocarbon_resources_fluids_swabs_data + range: MisagHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + misag_microbial_mat_biofilm_data: + name: misag_microbial_mat_biofilm_data + description: Data that comply with Misag combined with MicrobialMatBiofilm + title: MisagMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_microbial_mat_biofilm_data + range: MisagMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + misag_miscellaneous_natural_or_artificial_environment_data: + name: misag_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with Misag combined with MiscellaneousNaturalOrArtificialEnvironment + title: MisagMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_miscellaneous_natural_or_artificial_environment_data + range: MisagMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + misag_plant_associated_data: + name: misag_plant_associated_data + description: Data that comply with Misag combined with PlantAssociated + title: MisagPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_plant_associated_data + range: MisagPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_sediment_data: + name: misag_sediment_data + description: Data that comply with Misag combined with Sediment + title: MisagSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_sediment_data + range: MisagSediment + multivalued: true + inlined: true + inlined_as_list: true + misag_soil_data: + name: misag_soil_data + description: Data that comply with Misag combined with Soil + title: MisagSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_soil_data + range: MisagSoil + multivalued: true + inlined: true + inlined_as_list: true + misag_symbiont_associated_data: + name: misag_symbiont_associated_data + description: Data that comply with Misag combined with SymbiontAssociated + title: MisagSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_symbiont_associated_data + range: MisagSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_wastewater_sludge_data: + name: misag_wastewater_sludge_data + description: Data that comply with Misag combined with WastewaterSludge + title: MisagWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_wastewater_sludge_data + range: MisagWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + misag_water_data: + name: misag_water_data + description: Data that comply with Misag combined with Water + title: MisagWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:misag_water_data + range: MisagWater + multivalued: true + inlined: true + inlined_as_list: true + miuvig_data: + name: miuvig_data + description: Data that comply with checklist Miuvig + title: Miuvig data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_data + range: Miuvig + multivalued: true + inlined: true + inlined_as_list: true + miuvig_agriculture_data: + name: miuvig_agriculture_data + description: Data that comply with Miuvig combined with Agriculture + title: MiuvigAgriculture data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_agriculture_data + range: MiuvigAgriculture + multivalued: true + inlined: true + inlined_as_list: true + miuvig_air_data: + name: miuvig_air_data + description: Data that comply with Miuvig combined with Air + title: MiuvigAir data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_air_data + range: MiuvigAir + multivalued: true + inlined: true + inlined_as_list: true + miuvig_built_environment_data: + name: miuvig_built_environment_data + description: Data that comply with Miuvig combined with BuiltEnvironment + title: MiuvigBuiltEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_built_environment_data + range: MiuvigBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_animal_and_animal_feed_data: + name: miuvig_food_animal_and_animal_feed_data + description: Data that comply with Miuvig combined with FoodAnimalAndAnimalFeed + title: MiuvigFoodAnimalAndAnimalFeed data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_food_animal_and_animal_feed_data + range: MiuvigFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_farm_environment_data: + name: miuvig_food_farm_environment_data + description: Data that comply with Miuvig combined with FoodFarmEnvironment + title: MiuvigFoodFarmEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_food_farm_environment_data + range: MiuvigFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_food_production_facility_data: + name: miuvig_food_food_production_facility_data + description: Data that comply with Miuvig combined with FoodFoodProductionFacility + title: MiuvigFoodFoodProductionFacility data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_food_food_production_facility_data + range: MiuvigFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_human_foods_data: + name: miuvig_food_human_foods_data + description: Data that comply with Miuvig combined with FoodHumanFoods + title: MiuvigFoodHumanFoods data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_food_human_foods_data + range: MiuvigFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + miuvig_host_associated_data: + name: miuvig_host_associated_data + description: Data that comply with Miuvig combined with HostAssociated + title: MiuvigHostAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_host_associated_data + range: MiuvigHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_associated_data: + name: miuvig_human_associated_data + description: Data that comply with Miuvig combined with HumanAssociated + title: MiuvigHumanAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_human_associated_data + range: MiuvigHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_gut_data: + name: miuvig_human_gut_data + description: Data that comply with Miuvig combined with HumanGut + title: MiuvigHumanGut data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_human_gut_data + range: MiuvigHumanGut + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_oral_data: + name: miuvig_human_oral_data + description: Data that comply with Miuvig combined with HumanOral + title: MiuvigHumanOral data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_human_oral_data + range: MiuvigHumanOral + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_skin_data: + name: miuvig_human_skin_data + description: Data that comply with Miuvig combined with HumanSkin + title: MiuvigHumanSkin data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_human_skin_data + range: MiuvigHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_vaginal_data: + name: miuvig_human_vaginal_data + description: Data that comply with Miuvig combined with HumanVaginal + title: MiuvigHumanVaginal data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_human_vaginal_data + range: MiuvigHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + miuvig_hydrocarbon_resources_cores_data: + name: miuvig_hydrocarbon_resources_cores_data + description: Data that comply with Miuvig combined with HydrocarbonResourcesCores + title: MiuvigHydrocarbonResourcesCores data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_hydrocarbon_resources_cores_data + range: MiuvigHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + miuvig_hydrocarbon_resources_fluids_swabs_data: + name: miuvig_hydrocarbon_resources_fluids_swabs_data + description: Data that comply with Miuvig combined with HydrocarbonResourcesFluidsSwabs + title: MiuvigHydrocarbonResourcesFluidsSwabs data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_hydrocarbon_resources_fluids_swabs_data + range: MiuvigHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + miuvig_microbial_mat_biofilm_data: + name: miuvig_microbial_mat_biofilm_data + description: Data that comply with Miuvig combined with MicrobialMatBiofilm + title: MiuvigMicrobialMatBiofilm data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_microbial_mat_biofilm_data + range: MiuvigMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + miuvig_miscellaneous_natural_or_artificial_environment_data: + name: miuvig_miscellaneous_natural_or_artificial_environment_data + description: Data that comply with Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment + title: MiuvigMiscellaneousNaturalOrArtificialEnvironment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_miscellaneous_natural_or_artificial_environment_data + range: MiuvigMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_plant_associated_data: + name: miuvig_plant_associated_data + description: Data that comply with Miuvig combined with PlantAssociated + title: MiuvigPlantAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_plant_associated_data + range: MiuvigPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_sediment_data: + name: miuvig_sediment_data + description: Data that comply with Miuvig combined with Sediment + title: MiuvigSediment data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_sediment_data + range: MiuvigSediment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_soil_data: + name: miuvig_soil_data + description: Data that comply with Miuvig combined with Soil + title: MiuvigSoil data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_soil_data + range: MiuvigSoil + multivalued: true + inlined: true + inlined_as_list: true + miuvig_symbiont_associated_data: + name: miuvig_symbiont_associated_data + description: Data that comply with Miuvig combined with SymbiontAssociated + title: MiuvigSymbiontAssociated data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_symbiont_associated_data + range: MiuvigSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_wastewater_sludge_data: + name: miuvig_wastewater_sludge_data + description: Data that comply with Miuvig combined with WastewaterSludge + title: MiuvigWastewaterSludge data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_wastewater_sludge_data + range: MiuvigWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + miuvig_water_data: + name: miuvig_water_data + description: Data that comply with Miuvig combined with Water + title: MiuvigWater data + from_schema: https://w3id.org/mixs + domain: MixsCompliantData + slot_uri: MIXS:miuvig_water_data + range: MiuvigWater + multivalued: true + inlined: true + inlined_as_list: true + HACCP_term: + name: HACCP_term + description: Hazard Analysis Critical Control Points (HACCP) food safety terms; + This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221) + title: Hazard Analysis Critical Control Points (HACCP) guide food safety term + examples: + - value: tetrodotoxic poisoning [FOODON:03530249] + from_schema: https://w3id.org/mixs + keywords: + - food + - term + slot_uri: MIXS:0001215 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + IFSAC_category: + name: IFSAC_category + annotations: + Expected_value: + tag: Expected_value + value: IFSAC term + description: 'The IFSAC food categorization scheme has five distinct levels to + which foods can be assigned, depending upon the type of food. First, foods are + assigned to one of four food groups (aquatic animals, land animals, plants, + and other). Food groups include increasingly specific food categories; dairy, + eggs, meat and poultry, and game are in the land animal food group, and the + category meat and poultry is further subdivided into more specific categories + of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry). + Finally, foods are differentiated by differences in food processing (such as + pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized + solid and semi-solid dairy products, and unpasteurized solid and semi-solid + dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html + PMID: 28926300' + title: Interagency Food Safety Analytics Collaboration (IFSAC) category + examples: + - value: Plants:Produce:Vegetables:Herbs:Dried Herbs + from_schema: https://w3id.org/mixs + keywords: + - food + slot_uri: MIXS:0001179 + range: string + required: true + multivalued: true + abs_air_humidity: + name: abs_air_humidity + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram per gram, kilogram per kilogram, kilogram, pound + description: Actual mass of water vapor - mh20 - present in the air water vapor + mixture + title: absolute air humidity + examples: + - value: 9 gram per gram + from_schema: https://w3id.org/mixs + keywords: + - absolute + - air + - humidity + slot_uri: MIXS:0000122 + range: string + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + adapters: + name: adapters + description: Adapters provide priming sequences for both amplification and sequencing + of the sample-library fragments. Both adapters should be reported; in uppercase + letters + title: adapters + examples: + - value: AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000048 + structured_pattern: + syntax: ^{adapter_A_DNA_sequence};{adapter_B_DNA_sequence}$ + interpolated: true + partial_match: true + add_recov_method: + name: add_recov_method + description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed + for increase of hydrocarbon recovery from resource and start date for each one + of them. If "other" is specified, please propose entry in "additional info" + field + title: secondary and tertiary recovery methods and start date + examples: + - value: Polymer Addition;2018-06-21T14:30Z + from_schema: https://w3id.org/mixs + keywords: + - date + - method + - recover + - secondary + - start + slot_uri: MIXS:0001009 + required: true + structured_pattern: + syntax: ^({add_recov_methods});{date_time_stamp}$ + interpolated: true + partial_match: true + additional_info: + name: additional_info + description: Information that doesn't fit anywhere else. Can also be used to propose + new entries for fields with controlled vocabulary + title: additional info + from_schema: https://w3id.org/mixs + keywords: + - information + slot_uri: MIXS:0000300 + range: string + address: + name: address + description: The street name and building number where the sampling occurred + title: address + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000218 + structured_pattern: + syntax: ^{integer} {text}}$ + interpolated: true + partial_match: true + adj_room: + name: adj_room + description: List of rooms (room number, room name) immediately adjacent to the + sampling room + title: adjacent rooms + from_schema: https://w3id.org/mixs + keywords: + - adjacent + - room + slot_uri: MIXS:0000219 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + adjacent_environment: + name: adjacent_environment + annotations: + Expected_value: + tag: Expected_value + value: ENVO_01001110 or ENVO_00000070 + description: Description of the environmental system or features that are adjacent + to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) + and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple + terms can be separated by pipes + title: environment adjacent to site + examples: + - value: estuarine biome [ENVO:01000020] + from_schema: https://w3id.org/mixs + keywords: + - adjacent + - environment + - site + string_serialization: '{termLabel}{[termID]}' + slot_uri: MIXS:0001121 + multivalued: true + aero_struc: + name: aero_struc + description: Aerospace structures typically consist of thin plates with stiffeners + for the external surfaces, bulkheads and frames to support the shape and fasteners + such as welds, rivets, screws and bolts to hold the components together + title: aerospace structure + examples: + - value: plane + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000773 + range: AeroStrucEnum + agrochem_addition: + name: agrochem_addition + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Addition of fertilizers, pesticides, etc. - amount and time of applications + title: history/agrochemical additions + examples: + - value: roundup;5 milligram per liter;2018-06-21 + from_schema: https://w3id.org/mixs + keywords: + - history + slot_uri: MIXS:0000639 + multivalued: true + structured_pattern: + syntax: ^{agrochemical_name};{amount} {unit};{date_time_stamp}$ + interpolated: true + partial_match: true + air_PM_concen: + name: air_PM_concen + description: Concentration of substances that remain suspended in the air, and + comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can + report multiple PM's by entering numeric values preceded by name of PM + title: air particulate matter concentration + examples: + - value: PM2.5;10 microgram per cubic meter + from_schema: https://w3id.org/mixs + keywords: + - air + - concentration + - particle + - particulate + slot_uri: MIXS:0000108 + multivalued: true + structured_pattern: + syntax: ^{particulate_matter_name};{float} {unit}$ + interpolated: true + partial_match: true + air_flow_impede: + name: air_flow_impede + annotations: + Expected_value: + tag: Expected_value + value: enumeration;obstruction type; distance from sampling device + description: Presence of objects in the area that would influence or impede air + flow through the air filter + title: local air flow impediments + examples: + - value: obstructed;hay bales; 2 m + from_schema: https://w3id.org/mixs + keywords: + - air + string_serialization: '[obstructed|unobstructed]; {text}; {measurement value}' + slot_uri: MIXS:0001146 + multivalued: true + air_temp: + name: air_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of the air at the time of sampling + title: air temperature + from_schema: https://w3id.org/mixs + keywords: + - air + - temperature + slot_uri: MIXS:0000124 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + air_temp_regm: + name: air_temp_regm + annotations: + Expected_value: + tag: Expected_value + value: temperature value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: meter + description: Information about treatment involving an exposure to varying temperatures; + should include the temperature, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include different temperature regimens + title: air temperature regimen + examples: + - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - air + - regimen + - temperature + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000551 + multivalued: true + al_sat: + name: al_sat + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Aluminum saturation (esp. For tropical soils) + title: extreme_unusual_properties/Al saturation + from_schema: https://w3id.org/mixs + keywords: + - extreme + - properties + - saturation + - unusual + slot_uri: MIXS:0000607 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + al_sat_meth: + name: al_sat_meth + description: Reference or method used in determining Al saturation + title: extreme_unusual_properties/Al saturation method + from_schema: https://w3id.org/mixs + keywords: + - extreme + - method + - properties + - saturation + - unusual + slot_uri: MIXS:0000324 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + alkalinity: + name: alkalinity + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliequivalent per liter, milligram per liter + description: Alkalinity, the ability of a solution to neutralize acids to the + equivalence point of carbonate or bicarbonate + title: alkalinity + examples: + - value: 50 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - alkalinity + slot_uri: MIXS:0000421 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + alkalinity_method: + name: alkalinity_method + description: Method used for alkalinity measurement + title: alkalinity method + examples: + - value: titration + from_schema: https://w3id.org/mixs + keywords: + - alkalinity + - method + slot_uri: MIXS:0000298 + range: string + alkyl_diethers: + name: alkyl_diethers + description: Concentration of alkyl diethers + title: alkyl diethers + examples: + - value: 0.005 mole per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000490 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + alt: + name: alt + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric + balloons and heights of places such as atmospheric layers and clouds. It is + used to measure the height of an object which is above the earth's surface. + In this context, the altitude measurement is the vertical distance between the + earth's surface above sea level and the sampled position in the air + title: altitude + examples: + - value: 100 meter + in_subset: + - environment + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000094 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + aminopept_act: + name: aminopept_act + annotations: + Preferred_unit: + tag: Preferred_unit + value: mole per liter per hour + description: Measurement of aminopeptidase activity + title: aminopeptidase activity + examples: + - value: 0.269 mole per liter per hour + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000172 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ammonium: + name: ammonium + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of ammonium in the sample + title: ammonium + examples: + - value: 1.5 milligram per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000427 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + amniotic_fluid_color: + name: amniotic_fluid_color + description: Specification of the color of the amniotic fluid sample + title: amniotic fluid/color + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000276 + range: string + amount_light: + name: amount_light + annotations: + Preferred_unit: + tag: Preferred_unit + value: lux, lumens per square meter + description: The unit of illuminance and luminous emittance, measuring luminous + flux per unit area + title: amount of light + from_schema: https://w3id.org/mixs + keywords: + - light + slot_uri: MIXS:0000140 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ances_data: + name: ances_data + description: Information about either pedigree or other ancestral information + description (e.g. parental variety in case of mutant or selection), e.g. A/3*B + (meaning [(A x B) x B] x B) + title: ancestral data + examples: + - value: A/3*B + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000247 + range: string + anim_water_method: + name: anim_water_method + description: Description of the equipment or method used to distribute water to + livestock. This field accepts termed listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653). + Multiple terms can be separated by pipes + title: animal water delivery method + examples: + - value: water trough [EOL:0001618] + from_schema: https://w3id.org/mixs + keywords: + - animal + - delivery + - method + - water + slot_uri: MIXS:0001115 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + animal_am: + name: animal_am + description: The name(s) (generic or brand) of the antimicrobial(s) given to the + food animal within the last 30 days + title: food animal antimicrobial + examples: + - value: tetracycline + from_schema: https://w3id.org/mixs + keywords: + - animal + - antimicrobial + - food + slot_uri: MIXS:0001243 + range: string + animal_am_dur: + name: animal_am_dur + description: The duration of time (days) that the antimicrobial was administered + to the food animal + title: food animal antimicrobial duration + examples: + - value: 3 days + from_schema: https://w3id.org/mixs + keywords: + - animal + - antimicrobial + - duration + - food + - period + slot_uri: MIXS:0001244 + structured_pattern: + syntax: ^{float} days$ + interpolated: true + partial_match: true + animal_am_freq: + name: animal_am_freq + description: The frequency per day that the antimicrobial was administered to + the food animal + title: food animal antimicrobial frequency + examples: + - value: '1.5' + from_schema: https://w3id.org/mixs + keywords: + - animal + - antimicrobial + - food + - frequency + slot_uri: MIXS:0001245 + range: float + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + animal_am_route: + name: animal_am_route + description: The route by which the antimicrobial is adminstered into the body + of the food animal + title: food animal antimicrobial route of administration + examples: + - value: oral-feed + from_schema: https://w3id.org/mixs + keywords: + - administration + - animal + - antimicrobial + - food + - route + slot_uri: MIXS:0001246 + range: string + animal_am_use: + name: animal_am_use + description: The prescribed intended use of or the condition treated by the antimicrobial + given to the food animal by any route of administration + title: food animal antimicrobial intended use + examples: + - value: shipping fever + from_schema: https://w3id.org/mixs + keywords: + - animal + - antimicrobial + - food + - use + slot_uri: MIXS:0001247 + range: string + animal_body_cond: + name: animal_body_cond + description: Body condition scoring is a production management tool used to evaluate + overall health and nutritional needs of a food animal. Because there are different + scoring systems, this field is restricted to three categories + title: food animal body condition + examples: + - value: under conditioned + from_schema: https://w3id.org/mixs + keywords: + - animal + - body + - condition + - food + slot_uri: MIXS:0001248 + range: AnimalBodyCondEnum + animal_diet: + name: animal_diet + annotations: + Expected_value: + tag: Expected_value + value: text or FOODON_03309997 + description: If the isolate is from a food animal, the type of diet eaten by the + food animal. Please list the main food staple and the setting, if appropriate. For + a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple + terms may apply and can be separated by pipes |Food product for animal covers + foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997. + If the proper descriptor is not listed please use text to describe the food + type. Multiple terms can be separated by one or more pipes. If the proper descriptor + is not listed please use text to describe the food product type + title: food animal source diet + examples: + - value: Hay [FOODON:03301763] + from_schema: https://w3id.org/mixs + keywords: + - animal + - diet + - food + - source + slot_uri: MIXS:0001130 + range: string + multivalued: true + animal_feed_equip: + name: animal_feed_equip + annotations: + Expected_value: + tag: Expected_value + value: EOL:0001757 + description: Description of the feeding equipment used for livestock. This field + accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757). + Multiple terms can be separated by pipes + title: animal feeding equipment + examples: + - value: self feeding [EOL:0001645]| straight feed trough [EOL:0001661] + from_schema: https://w3id.org/mixs + keywords: + - animal + - equipment + slot_uri: MIXS:0001113 + multivalued: true + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + animal_group_size: + name: animal_group_size + description: The number of food animals of the same species that are maintained + together as a unit, i.e. a herd or flock + title: food animal group size + examples: + - value: '80' + from_schema: https://w3id.org/mixs + keywords: + - animal + - food + - size + slot_uri: MIXS:0001129 + range: integer + animal_housing: + name: animal_housing + description: Description of the housing system of the livestock. This field accepts + terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605) + title: animal housing system + examples: + - value: pen rearing system [EOL:0001636] + from_schema: https://w3id.org/mixs + keywords: + - animal + slot_uri: MIXS:0001180 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + animal_intrusion: + name: animal_intrusion + description: Identification of animals intruding on the sample or sample site + including invertebrates (such as pests or pollinators) and vertebrates (such + as wildlife or domesticated animals). This field accepts terms under organism + (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification + numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms + can be separated by pipes + title: animal intrusion near sample source + examples: + - value: Thripidae [NCBITaxon:45053] + from_schema: https://w3id.org/mixs + keywords: + - animal + - sample + - source + slot_uri: MIXS:0001114 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + animal_sex: + name: animal_sex + description: The sex and reproductive status of the food animal + title: food animal source sex category + examples: + - value: castrated male + from_schema: https://w3id.org/mixs + keywords: + - animal + - food + - source + slot_uri: MIXS:0001249 + range: AnimalSexEnum + annot: + name: annot + annotations: + Expected_value: + tag: Expected_value + value: name of tool or pipeline used, or annotation source description + description: Tool used for annotation, or for cases where annotation was provided + by a community jamboree or model organism database rather than by a specific + submitter + title: annotation + examples: + - value: prokka + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000059 + range: string + annual_precpt: + name: annual_precpt + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter + description: The average of all annual precipitation values known, or an estimated + equivalent value derived by such methods as regional indexes or Isohyetal maps + title: mean annual precipitation + from_schema: https://w3id.org/mixs + keywords: + - mean + slot_uri: MIXS:0000644 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + annual_temp: + name: annual_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Mean annual temperature + title: mean annual temperature + examples: + - value: 12.5 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - mean + - temperature + slot_uri: MIXS:0000642 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + antibiotic_regm: + name: antibiotic_regm + annotations: + Expected_value: + tag: Expected_value + value: antibiotic name;antibiotic amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: milligram + description: Information about treatment involving antibiotic administration; + should include the name of antibiotic, amount administered, treatment regimen + including how many times the treatment was repeated, how long each treatment + lasted, and the start and end time of the entire treatment; can include multiple + antibiotic regimens + title: antibiotic regimen + examples: + - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000553 + multivalued: true + api: + name: api + annotations: + Preferred_unit: + tag: Preferred_unit + value: degrees API + description: 'API gravity is a measure of how heavy or light a petroleum liquid + is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. + 31.1 API)' + title: API gravity + examples: + - value: 31.1 API + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000157 + range: string + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + arch_struc: + name: arch_struc + description: An architectural structure is a human-made, free-standing, immobile + outdoor construction + title: architectural structure + examples: + - value: shed + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000774 + range: ArchStrucEnum + area_samp_size: + name: area_samp_size + annotations: + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: centimeter + description: The total amount or size (volume (ml), mass (g) or area (m2) ) of + sample collected + title: area sampled size + examples: + - value: 12 centimeter x 12 centimeter + from_schema: https://w3id.org/mixs + keywords: + - area + - sample + - size + string_serialization: '{integer} {unit} x {integer} {unit}' + slot_uri: MIXS:0001255 + aromatics_pc: + name: aromatics_pc + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: + https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: aromatics wt% + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000133 + range: string + recommended: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + asphaltenes_pc: + name: asphaltenes_pc + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: + https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: asphaltenes wt% + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000135 + range: string + recommended: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + assembly_name: + name: assembly_name + annotations: + Expected_value: + tag: Expected_value + value: name and version of assembly + description: Name/version of the assembly provided by the submitter that is used + in the genome browsers and in the community + title: assembly name + examples: + - value: HuRef, JCVI_ISG_i3_1.0 + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + string_serialization: '{text} {text}' + slot_uri: MIXS:0000057 + assembly_qual: + name: assembly_qual + description: 'The assembly quality category is based on sets of criteria outlined + for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated, + contiguous sequence per replicon without gaps or ambiguities with a consensus + error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments + where gaps span repetitive regions. Presence of the large subunit (LSU) RNA, + small subunit (SSU) and the presence of 5.8S rRNA or 5S rRNA depending on whether + it is a eukaryotic or prokaryotic genome, respectively. Medium Quality Draft:Many + fragments with little to no review of assembly other than reporting of standard + assembly statistics. Low Quality Draft:Many fragments with little to no review + of assembly other than reporting of standard assembly statistics. Assembly statistics + include, but are not limited to total assembly size, number of contigs, contig + N50/L50, and maximum contig length. For MIUVIG; Finished: Single, validated, + contiguous sequence per replicon without gaps or ambiguities, with extensive + manual review and editing to annotate putative gene functions and transcriptional + units. High-quality draft genome: One or multiple fragments, totaling 90% + of the expected genome or replicon sequence or predicted complete. Genome fragment(s): + One or multiple fragments, totalling < 90% of the expected genome or replicon + sequence, or for which no genome size could be estimated' + title: assembly quality + examples: + - value: High-quality draft genome + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - quality + slot_uri: MIXS:0000056 + range: AssemblyQualEnum + assembly_software: + name: assembly_software + description: Tool(s) used for assembly, including version number and parameters + title: assembly software + examples: + - value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + slot_uri: MIXS:0000058 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + associated_resource: + name: associated_resource + annotations: + Expected_value: + tag: Expected_value + value: reference to resource + description: A related resource that is referenced, cited, or otherwise associated + to the sequence + title: relevant electronic resources + examples: + - value: http://www.earthmicrobiome.org/ + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - resource + string_serialization: '{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0000091 + recommended: true + multivalued: true + association_duration: + name: association_duration + annotations: + Preferred_unit: + tag: Preferred_unit + value: year, day, hour + description: Time spent in host of the symbiotic organism at the time of sampling; + relevant scale depends on symbiotic organism and study + title: duration of association with the host + from_schema: https://w3id.org/mixs + keywords: + - duration + - host + - host. + - period + slot_uri: MIXS:0001299 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + atmospheric_data: + name: atmospheric_data + annotations: + Expected_value: + tag: Expected_value + value: atmospheric data name;measurement value + description: Measurement of atmospheric data; can include multiple data + title: atmospheric data + examples: + - value: wind speed;9 knots + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0001097 + multivalued: true + avg_dew_point: + name: avg_dew_point + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The average of dew point measures taken at the beginning of every + hour over a 24 hour period on the sampling day + title: average dew point + examples: + - value: 25.5 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - average + slot_uri: MIXS:0000141 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + avg_occup: + name: avg_occup + description: Daily average occupancy of room. Indicate the number of person(s) + daily occupying the sampling room + title: average daily occupancy + from_schema: https://w3id.org/mixs + keywords: + - average + slot_uri: MIXS:0000775 + range: float + avg_temp: + name: avg_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The average of temperatures taken at the beginning of every hour + over a 24 hour period on the sampling day + title: average temperature + examples: + - value: 12.5 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - average + - temperature + slot_uri: MIXS:0000142 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bac_prod: + name: bac_prod + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day + description: Bacterial production in the water column measured by isotope uptake + title: bacterial production + examples: + - value: 5 milligram per cubic meter per day + from_schema: https://w3id.org/mixs + keywords: + - production + slot_uri: MIXS:0000683 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bac_resp: + name: bac_resp + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day, micromole oxygen per liter per hour + description: Measurement of bacterial respiration in the water column + title: bacterial respiration + examples: + - value: 300 micromole oxygen per liter per hour + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000684 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bacteria_carb_prod: + name: bacteria_carb_prod + description: Measurement of bacterial carbon production + title: bacterial carbon production + examples: + - value: 2.53 microgram per liter per hour + from_schema: https://w3id.org/mixs + keywords: + - carbon + - production + slot_uri: MIXS:0000173 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bacterial_density: + name: bacterial_density + annotations: + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight + description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043) + title: bacteria density + examples: + - value: 10 colony forming units per gram dry weight + from_schema: https://w3id.org/mixs + keywords: + - density + slot_uri: MIXS:0001194 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + barometric_press: + name: barometric_press + annotations: + Preferred_unit: + tag: Preferred_unit + value: millibar + description: Force per unit area exerted against a surface by the weight of air + above that surface + title: barometric pressure + examples: + - value: 5 millibar + from_schema: https://w3id.org/mixs + keywords: + - pressure + slot_uri: MIXS:0000096 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + basin: + name: basin + description: Name of the basin (e.g. Campos) + title: basin name + examples: + - value: Campos + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000290 + range: string + required: true + bathroom_count: + name: bathroom_count + description: The number of bathrooms in the building + title: bathroom count + examples: + - value: '1' + from_schema: https://w3id.org/mixs + keywords: + - count + slot_uri: MIXS:0000776 + range: integer + bedroom_count: + name: bedroom_count + description: The number of bedrooms in the building + title: bedroom count + examples: + - value: '2' + from_schema: https://w3id.org/mixs + keywords: + - count + slot_uri: MIXS:0000777 + range: integer + benzene: + name: benzene + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of benzene in the sample + title: benzene + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000153 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bin_param: + name: bin_param + description: The parameters that have been applied during the extraction of genomes + from metagenomic datasets + title: binning parameters + examples: + - value: coverage + description: was 'coverage and kmer' + - value: kmer + description: was coverage and kmer + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - parameter + slot_uri: MIXS:0000077 + range: BinParamEnum + bin_software: + name: bin_software + annotations: + Expected_value: + tag: Expected_value + value: names and versions of software(s) used + description: Tool(s) used for the extraction of genomes from metagenomic datasets, + where possible include a product ID (PID) of the tool(s) used + title: binning software + examples: + - value: MetaCluster-TA (RRID:SCR_004599), MaxBin (biotools:maxbin) + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + string_serialization: '{software};{version}{PID}' + slot_uri: MIXS:0000078 + biochem_oxygen_dem: + name: biochem_oxygen_dem + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Amount of dissolved oxygen needed by aerobic biological organisms + in a body of water to break down organic material present in a given water sample + at certain temperature over a specific time period + title: biochemical oxygen demand + from_schema: https://w3id.org/mixs + keywords: + - oxygen + slot_uri: MIXS:0000653 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + biocide: + name: biocide + annotations: + Expected_value: + tag: Expected_value + value: name;name;timestamp + description: List of biocides (commercial name of product and supplier) and date + of administration + title: biocide administration + examples: + - value: ALPHA 1427;Baker Hughes;2008-01-23 + from_schema: https://w3id.org/mixs + keywords: + - administration + string_serialization: '{text};{text};{timestamp}' + slot_uri: MIXS:0001011 + recommended: true + biocide_admin_method: + name: biocide_admin_method + annotations: + Expected_value: + tag: Expected_value + value: measurement value;frequency;duration;duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Method of biocide administration (dose, frequency, duration, time + elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 + days) + title: biocide administration method + from_schema: https://w3id.org/mixs + keywords: + - administration + - method + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}' + slot_uri: MIXS:0000456 + recommended: true + biocide_used: + name: biocide_used + annotations: + Expected_value: + tag: Expected_value + value: commercial name of biocide, active ingredient in biocide or class of + biocide + description: Substance intended for preventing, neutralizing, destroying, repelling, + or mitigating the effects of any pest or microorganism; that inhibits the growth, + reproduction, and activity of organisms, including fungal cells; decreases the + number of fungi or pests present; deters microbial growth and degradation of + other ingredients in the formulation. Indicate the biocide used on the location + where the sample was taken. Multiple terms can be separated by pipes + title: biocide + examples: + - value: Quaternary ammonium compound|SterBac + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001258 + range: string + multivalued: true + biol_stat: + name: biol_stat + description: The level of genome modification + title: biological status + examples: + - value: natural + from_schema: https://w3id.org/mixs + keywords: + - status + slot_uri: MIXS:0000858 + range: BiolStatEnum + biomass: + name: biomass + annotations: + Expected_value: + tag: Expected_value + value: biomass type;measurement value + Preferred_unit: + tag: Preferred_unit + value: ton, kilogram, gram + description: Amount of biomass; should include the name for the part of biomass + measured, e.g. Microbial, total. Can include multiple measurements + title: biomass + examples: + - value: total;20 gram + from_schema: https://w3id.org/mixs + keywords: + - biomass + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000174 + multivalued: true + biotic_regm: + name: biotic_regm + description: Information about treatment(s) involving use of biotic factors, such + as bacteria, viruses or fungi + title: biotic regimen + examples: + - value: sample inoculated with Rhizobium spp. Culture + from_schema: https://w3id.org/mixs + keywords: + - regimen + slot_uri: MIXS:0001038 + range: string + multivalued: true + biotic_relationship: + name: biotic_relationship + description: Description of relationship(s) between the subject organism and other + organism(s) it is associated with. E.g., parasite on species X; mutualist with + species Y. The target organism is the subject of the relationship, and the other + organism(s) is the object + title: observed biotic relationship + examples: + - value: free living + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - observed + - relationship + slot_uri: MIXS:0000028 + range: BioticRelationshipEnum + birth_control: + name: birth_control + annotations: + Expected_value: + tag: Expected_value + value: medication name + description: Specification of birth control medication used + title: birth control + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000286 + range: string + bishomohopanol: + name: bishomohopanol + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, microgram per gram + description: Concentration of bishomohopanol + title: bishomohopanol + examples: + - value: 14 microgram per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000175 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + blood_blood_disord: + name: blood_blood_disord + description: History of blood disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + hematopoietic system disease (https://disease-ontology.org/?id=DOID:74) + title: blood/blood disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000271 + range: string + multivalued: true + blood_press_diast: + name: blood_press_diast + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter mercury + description: Resting diastolic blood pressure, measured as mm mercury + title: host blood pressure diastolic + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - pressure + slot_uri: MIXS:0000258 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + blood_press_syst: + name: blood_press_syst + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter mercury + description: Resting systolic blood pressure, measured as mm mercury + title: host blood pressure systolic + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - pressure + slot_uri: MIXS:0000259 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bromide: + name: bromide + annotations: + Preferred_unit: + tag: Preferred_unit + value: parts per million + description: Concentration of bromide + title: bromide + examples: + - value: 0.05 parts per million + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000176 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + build_docs: + name: build_docs + description: The building design, construction and operation documents + title: design, construction, and operation documents + examples: + - value: maintenance plans + from_schema: https://w3id.org/mixs + keywords: + - documents + slot_uri: MIXS:0000787 + range: BuildDocsEnum + build_occup_type: + name: build_occup_type + description: The primary function for which a building or discrete part of a building + is intended to be used + title: building occupancy type + examples: + - value: market + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000761 + range: BuildOccupTypeEnum + required: true + multivalued: true + building_setting: + name: building_setting + description: A location (geography) where a building is set + title: building setting + examples: + - value: rural + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000768 + range: BuildingSettingEnum + required: true + built_struc_age: + name: built_struc_age + annotations: + Preferred_unit: + tag: Preferred_unit + value: year + description: The age of the built structure since construction + title: built structure age + examples: + - value: 15 years + from_schema: https://w3id.org/mixs + keywords: + - age + slot_uri: MIXS:0000145 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + built_struc_set: + name: built_struc_set + description: The characterization of the location of the built structure as high + or low human density + title: built structure setting + examples: + - value: rural + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000778 + range: BuiltStrucSetEnum + built_struc_type: + name: built_struc_type + description: A physical structure that is a body or assemblage of bodies in space + to form a system capable of supporting loads + title: built structure type + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000721 + range: string + calcium: + name: calcium + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, micromole per liter, parts per million + description: Concentration of calcium in the sample + title: calcium + examples: + - value: 0.2 micromole per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000432 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + carb_dioxide: + name: carb_dioxide + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per million + description: Carbon dioxide (gas) amount or concentration at the time of sampling + title: carbon dioxide + examples: + - value: 410 parts per million + from_schema: https://w3id.org/mixs + keywords: + - carbon + slot_uri: MIXS:0000097 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + carb_monoxide: + name: carb_monoxide + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per million + description: Carbon monoxide (gas) amount or concentration at the time of sampling + title: carbon monoxide + examples: + - value: 0.1 parts per million + from_schema: https://w3id.org/mixs + keywords: + - carbon + slot_uri: MIXS:0000098 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + carb_nitro_ratio: + name: carb_nitro_ratio + annotations: + Expected_value: + tag: Expected_value + value: measurement value + description: Ratio of amount or concentrations of carbon to nitrogen + title: carbon/nitrogen ratio + examples: + - value: '0.417361111' + from_schema: https://w3id.org/mixs + keywords: + - carbon + - nitrogen + - ratio + string_serialization: '{float}:{float}' + slot_uri: MIXS:0000310 + range: float + ceil_area: + name: ceil_area + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The area of the ceiling space within the room + title: ceiling area + examples: + - value: 25 square meter + from_schema: https://w3id.org/mixs + keywords: + - area + - ceiling + slot_uri: MIXS:0000148 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ceil_cond: + name: ceil_cond + description: The physical condition of the ceiling at the time of sampling; photos + or video preferred; use drawings to indicate location of damaged areas + title: ceiling condition + examples: + - value: damaged + from_schema: https://w3id.org/mixs + keywords: + - ceiling + - condition + slot_uri: MIXS:0000779 + range: DamagedEnum + ceil_finish_mat: + name: ceil_finish_mat + description: The type of material used to finish a ceiling + title: ceiling finish material + examples: + - value: stucco + from_schema: https://w3id.org/mixs + keywords: + - ceiling + - material + slot_uri: MIXS:0000780 + range: CeilFinishMatEnum + ceil_struc: + name: ceil_struc + description: The construction format of the ceiling + title: ceiling structure + examples: + - value: concrete + from_schema: https://w3id.org/mixs + keywords: + - ceiling + slot_uri: MIXS:0000782 + range: CeilStrucEnum + ceil_texture: + name: ceil_texture + description: The feel, appearance, or consistency of a ceiling surface + title: ceiling texture + examples: + - value: popcorn + from_schema: https://w3id.org/mixs + keywords: + - ceiling + - texture + slot_uri: MIXS:0000783 + range: CeilingWallTextureEnum + ceil_thermal_mass: + name: ceil_thermal_mass + annotations: + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the ceiling to provide inertia against temperature + fluctuations. Generally this means concrete that is exposed. A metal deck that + supports a concrete slab will act thermally as long as it is exposed to room + air flow + title: ceiling thermal mass + from_schema: https://w3id.org/mixs + keywords: + - ceiling + - mass + slot_uri: MIXS:0000143 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ceil_type: + name: ceil_type + description: The type of ceiling according to the ceiling's appearance or construction + title: ceiling type + examples: + - value: coffered + from_schema: https://w3id.org/mixs + keywords: + - ceiling + - type + slot_uri: MIXS:0000784 + range: CeilTypeEnum + ceil_water_mold: + name: ceil_water_mold + description: Signs of the presence of mold or mildew on the ceiling + title: ceiling signs of water/mold + examples: + - value: presence of mold visible + from_schema: https://w3id.org/mixs + keywords: + - ceiling + slot_uri: MIXS:0000781 + range: MoldVisibilityEnum + chem_administration: + name: chem_administration + annotations: + Expected_value: + tag: Expected_value + value: CHEBI;timestamp + description: List of chemical compounds administered to the host or site where + sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can + include multiple compounds. For chemical entities of biological interest ontology + (chebi) (v 163), http://purl.bioontology.org/ontology/chebi + title: chemical administration + examples: + - value: agar [CHEBI:2509];2018-05-11T20:00Z + from_schema: https://w3id.org/mixs + keywords: + - administration + string_serialization: '{termLabel} [{termID}];{timestamp}' + slot_uri: MIXS:0000751 + multivalued: true + chem_mutagen: + name: chem_mutagen + annotations: + Expected_value: + tag: Expected_value + value: mutagen name;mutagen amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Treatment involving use of mutagens; should include the name of mutagen, + amount administered, treatment regimen including how many times the treatment + was repeated, how long each treatment lasted, and the start and end time of + the entire treatment; can include multiple mutagen regimens + title: chemical mutagen + examples: + - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000555 + multivalued: true + chem_oxygen_dem: + name: chem_oxygen_dem + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: A measure of the capacity of water to consume oxygen during the decomposition + of organic matter and the oxidation of inorganic chemicals such as ammonia and + nitrite + title: chemical oxygen demand + from_schema: https://w3id.org/mixs + keywords: + - oxygen + slot_uri: MIXS:0000656 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + chem_treat_method: + name: chem_treat_method + annotations: + Expected_value: + tag: Expected_value + value: measurement value;frequency;duration;duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Method of chemical administration(dose, frequency, duration, time + elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 + hr; 0 days) + title: chemical treatment method + from_schema: https://w3id.org/mixs + keywords: + - method + - treatment + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}' + slot_uri: MIXS:0000457 + chem_treatment: + name: chem_treatment + annotations: + Expected_value: + tag: Expected_value + value: name;name;timestamp + description: List of chemical compounds administered upstream the sampling location + where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, + demulsifiers, and other production chemicals etc.). The commercial name of the + product and name of the supplier should be provided. The date of administration + should also be included + title: chemical treatment + examples: + - value: ACCENT 1125;DOW;2010-11-17 + from_schema: https://w3id.org/mixs + keywords: + - treatment + string_serialization: '{text};{text};{timestamp}' + slot_uri: MIXS:0001012 + chimera_check: + name: chimera_check + description: Tool(s) used for chimera checking, including version number and parameters, + to discover and remove chimeric sequences. A chimeric sequence is comprised + of two or more phylogenetically distinct parent sequences + title: chimera check software + examples: + - value: uchime;v4.1;default parameters + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + slot_uri: MIXS:0000052 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + chloride: + name: chloride + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of chloride in the sample + title: chloride + examples: + - value: 5000 milligram per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000429 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + chlorophyll: + name: chlorophyll + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter, microgram per liter + description: Concentration of chlorophyll + title: chlorophyll + examples: + - value: 5 milligram per cubic meter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000177 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + climate_environment: + name: climate_environment + description: Treatment involving an exposure to a particular climate; treatment + regimen including how many times the treatment was repeated, how long each treatment + lasted, and the start and end time of the entire treatment; can include multiple + climates + title: climate environment + examples: + - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - environment + slot_uri: MIXS:0001040 + range: string + multivalued: true + coll_site_geo_feat: + name: coll_site_geo_feat + annotations: + Expected_value: + tag: Expected_value + value: ENVO:00000002 or ENVO:00000070 + description: 'Text or terms that describe the geographic feature where the food + sample was obtained by the researcher. This field accepts selected terms listed + under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002), + for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011} + or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002]; + or human construction (http://purl.obolibrary.org/obo/ENVO_00000070)' + title: collection site geographic feature + examples: + - value: farm [ENVO:00000078] + from_schema: https://w3id.org/mixs + keywords: + - feature + - geographic + - site + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001183 + required: true + collection_date: + name: collection_date + description: 'The time of sampling, either as an instance (single point in time) + or interval. In case no exact time is available, the date/time can be right + truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; + 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant' + title: collection date + examples: + - value: '2013-03-25T12:42:31+01:00' + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - date + slot_uri: MIXS:0000011 + range: datetime + required: true + compl_appr: + name: compl_appr + annotations: + Expected_value: + tag: Expected_value + value: text + description: The approach used to determine the completeness of a given genomic + assembly, which would typically make use of a set of conserved marker genes + or a closely related reference genome. For UViG completeness, include reference + genome or group used, and contig feature suggesting a complete genome + title: completeness approach + examples: + - value: other + description: was other UViG length compared to the average length of + reference genomes from the P22virus genus (NCBI RefSeq v83) + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000071 + range: ComplApprEnum + compl_score: + name: compl_score + annotations: + Expected_value: + tag: Expected_value + value: quality;percent completeness + description: 'Completeness score is typically based on either the fraction of + markers found as compared to a database or the percent of a genome found as + compared to a closely related reference genome. High Quality Draft: >90%, Medium + Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated + completeness scores' + title: completeness score + examples: + - value: med;60% + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - score + string_serialization: '[high|med|low];{percentage}' + slot_uri: MIXS:0000069 + compl_software: + name: compl_software + annotations: + Expected_value: + tag: Expected_value + value: names and versions of software(s) used + description: Tools used for completion estimate, i.e. checkm, anvi'o, busco + title: completeness software + examples: + - value: checkm + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + string_serialization: '{software};{version}' + slot_uri: MIXS:0000070 + conduc: + name: conduc + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliSiemens per centimeter + description: Electrical conductivity of water + title: conductivity + examples: + - value: 10 milliSiemens per centimeter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000692 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + cons_food_stor_dur: + name: cons_food_stor_dur + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: The storage duration of the food commodity by the consumer, prior + to onset of illness or sample collection. Indicate the timepoint written in + ISO 8601 format + title: food stored by consumer (storage duration) + examples: + - value: P5D + from_schema: https://w3id.org/mixs + keywords: + - consumer + - duration) + - food + - storage + slot_uri: MIXS:0001195 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + cons_food_stor_temp: + name: cons_food_stor_temp + annotations: + Expected_value: + tag: Expected_value + value: text or measurement value + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which food commodity was stored by the consumer, prior + to onset of illness or sample collection + title: food stored by consumer (storage temperature) + examples: + - value: 4 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - consumer + - food + - storage + - temperature + string_serialization: '{float} {unit}|{text}' + slot_uri: MIXS:0001196 + cons_purch_date: + name: cons_purch_date + description: The date a food product was purchased by consumer + title: purchase date + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + keywords: + - date + slot_uri: MIXS:0001197 + range: datetime + cons_qty_purchased: + name: cons_qty_purchased + description: The quantity of food purchased by consumer + title: quantity purchased + examples: + - value: 5 cans + from_schema: https://w3id.org/mixs + keywords: + - quantity + slot_uri: MIXS:0001198 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + contam_score: + name: contam_score + description: 'The contamination score is based on the fraction of single-copy + genes that are observed more than once in a query genome. The following scores + are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low + Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be + deposited into any of the public databases' + title: contamination score + examples: + - value: '0.01' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - score + slot_uri: MIXS:0000072 + range: float + contam_screen_input: + name: contam_screen_input + description: The type of sequence data used as input + title: contamination screening input + examples: + - value: contigs + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000005 + range: ContamScreenInputEnum + contam_screen_param: + name: contam_screen_param + annotations: + Expected_value: + tag: Expected_value + value: enumeration;value or name + description: Specific parameters used in the decontamination sofware, such as + reference database, coverage, and kmers. Combinations of these parameters may + also be used, i.e. kmer and coverage, or reference database and kmer + title: contamination screening parameters + examples: + - value: kmer + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - parameter + string_serialization: '[ref db|kmer|coverage|combination];{text|integer}' + slot_uri: MIXS:0000073 + cool_syst_id: + name: cool_syst_id + description: The cooling system identifier + title: cooling system identifier + examples: + - value: '12345' + from_schema: https://w3id.org/mixs + keywords: + - identifier + slot_uri: MIXS:0000785 + range: integer + crop_rotation: + name: crop_rotation + annotations: + Expected_value: + tag: Expected_value + value: crop rotation status;schedule + description: Whether or not crop is rotated, and if yes, rotation schedule + title: history/crop rotation + examples: + - value: yes;R2/2017-01-01/2018-12-31/P6M + from_schema: https://w3id.org/mixs + keywords: + - history + slot_uri: MIXS:0000318 + crop_yield: + name: crop_yield + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram per metre square + description: Amount of crop produced per unit or area of land + title: crop yield + examples: + - value: 570 kilogram per metre square + from_schema: https://w3id.org/mixs + keywords: + - crop + slot_uri: MIXS:0001116 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + cult_isol_date: + name: cult_isol_date + description: The datetime marking the end of a process in which a sample yields + a positive result for the target microbial analyte(s) in the form of an isolated + colony or colonies + title: culture isolation date + examples: + - value: '2018-05-11T10:00:00+01:00' + from_schema: https://w3id.org/mixs + keywords: + - culture + - date + - isolation + slot_uri: MIXS:0001181 + range: datetime + cult_result: + name: cult_result + description: Any result of a bacterial culture experiment reported as a binary + assessment such as positive/negative, active/inactive + title: culture result + examples: + - value: positive + from_schema: https://w3id.org/mixs + keywords: + - culture + slot_uri: MIXS:0001117 + range: CultResultEnum + cult_result_org: + name: cult_result_org + description: Taxonomic information about the cultured organism(s) + title: culture result organism + examples: + - value: Listeria monocytogenes [NCIT:C86502] + from_schema: https://w3id.org/mixs + keywords: + - culture + - organism + slot_uri: MIXS:0001118 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + cult_root_med: + name: cult_root_med + annotations: + Expected_value: + tag: Expected_value + value: name, PMID,DOI or url + description: Name or reference for the hydroponic or in vitro culture rooting + medium; can be the name of a commonly used medium or reference to a specific + medium, e.g. Murashige and Skoog medium. If the medium has not been formally + published, use the rooting medium descriptors + title: culture rooting medium + examples: + - value: http://himedialabs.com/TD/PT158.pdf + from_schema: https://w3id.org/mixs + keywords: + - culture + string_serialization: '{text}|{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0001041 + cult_target: + name: cult_target + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C14250 or NCBI taxid or culture independent + description: The target microbial analyte in terms of investigation scope. This + field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy + title: culture target microbial analyte + examples: + - value: Listeria monocytogenes [NCIT:C86502] + from_schema: https://w3id.org/mixs + keywords: + - culture + - microbial + - target + string_serialization: '{termLabel} [{termID}]|{integer}' + slot_uri: MIXS:0001119 + multivalued: true + cur_land_use: + name: cur_land_use + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Present state of sample site + title: current land use + examples: + - value: conifers + from_schema: https://w3id.org/mixs + keywords: + - land + - use + string_serialization: '[cities|farmstead|industrial areas|roads/railroads|rock|sand|gravel|mudflats|salt + flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste areas|small + grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands + (grass,sedges,rushes)|tundra (mosses,lichens)|rangeland|pastureland (grasslands + used for livestock grazing)|hayland|meadows (grasses,alfalfa,fescue,bromegrass,timothy)|shrub + land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)|successional + shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)|shrub + crops (blueberries,nursery ornamentals,filberts)|vine crops (grapes)|conifers + (e.g. pine,spruce,fir,cypress)|hardwoods (e.g. oak,hickory,elm,aspen)|intermixed + hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen forest + receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent water + body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery + trees)]' + slot_uri: MIXS:0001080 + cur_vegetation: + name: cur_vegetation + annotations: + Expected_value: + tag: Expected_value + value: current vegetation type + description: Vegetation classification from one or more standard classification + systems, or agricultural crop + title: current vegetation + from_schema: https://w3id.org/mixs + keywords: + - vegetation + slot_uri: MIXS:0000312 + range: string + cur_vegetation_meth: + name: cur_vegetation_meth + description: Reference or method used in vegetation classification + title: current vegetation method + from_schema: https://w3id.org/mixs + keywords: + - method + - vegetation + slot_uri: MIXS:0000314 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + date_extr_weath: + name: date_extr_weath + description: Date of unusual weather events that may have affected microbial populations. + Multiple terms can be separated by pipes, listed in reverse chronological order + title: extreme weather date + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + keywords: + - date + - extreme + - weather + slot_uri: MIXS:0001142 + range: datetime + multivalued: true + date_last_rain: + name: date_last_rain + description: The date of the last time it rained + title: date last rain + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + keywords: + - date + - rain + slot_uri: MIXS:0000786 + range: datetime + decontam_software: + name: decontam_software + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Tool(s) used in contamination screening + title: decontamination software + examples: + - value: anvi'o + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + string_serialization: '[checkm/refinem|anvi''o|prodege|bbtools:decontaminate.sh|acdc|combination]' + slot_uri: MIXS:0000074 + density: + name: density + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram per cubic meter, gram per cubic centimeter + description: Density of the sample, which is its mass per unit volume (aka volumetric + mass density) + title: density + examples: + - value: 1000 kilogram per cubic meter + from_schema: https://w3id.org/mixs + keywords: + - density + slot_uri: MIXS:0000435 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + depos_env: + name: depos_env + description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). + If "other" is specified, please propose entry in "additional info" field + title: depositional environment + from_schema: https://w3id.org/mixs + keywords: + - environment + slot_uri: MIXS:0000992 + range: DeposEnvEnum + recommended: true + depth: + name: depth + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: The vertical distance below local surface. For sediment or soil samples + depth is measured from sediment or soil surface, respectively. Depth can be + reported as an interval for subsurface samples + title: depth + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - depth + slot_uri: MIXS:0000018 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + dermatology_disord: + name: dermatology_disord + description: History of dermatology disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + skin disease (https://disease-ontology.org/?id=DOID:37) + title: dermatology disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000284 + range: string + multivalued: true + detec_type: + name: detec_type + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Type of UViG detection + title: detection type + examples: + - value: independent sequence (UViG) + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - type + string_serialization: '[independent sequence (UViG)|provirus (UpViG)]' + slot_uri: MIXS:0000084 + dew_point: + name: dew_point + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The temperature to which a given parcel of humid air must be cooled, + at constant barometric pressure, for water vapor to condense into water + title: dew point + examples: + - value: 22 degree Celsius + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000129 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diet_last_six_month: + name: diet_last_six_month + annotations: + Expected_value: + tag: Expected_value + value: diet change;current diet + description: Specification of major diet changes in the last six months, if yes + the change should be specified + title: major diet change in last six months + examples: + - value: yes;vegetarian diet + from_schema: https://w3id.org/mixs + keywords: + - diet + - months + string_serialization: '{boolean};{text}' + slot_uri: MIXS:0000266 + dietary_claim_use: + name: dietary_claim_use + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03510023 + description: These descriptors are used either for foods intended for special + dietary use as defined in 21 CFR 105 or for foods that have special characteristics + indicated in the name or labeling. This field accepts terms listed under dietary + claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms + can be separated by one or more pipes, but please consider limiting this list + to the most prominent dietary claim or use + title: dietary claim or use + examples: + - value: No preservatives [FOODON:03510113] + from_schema: https://w3id.org/mixs + keywords: + - diet + - use + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001199 + multivalued: true + diether_lipids: + name: diether_lipids + annotations: + Expected_value: + tag: Expected_value + value: diether lipid name;measurement value + Preferred_unit: + tag: Preferred_unit + value: nanogram per liter + description: Concentration of diether lipids; can include multiple types of diether + lipids + title: diether lipids + examples: + - value: 0.2 nanogram per liter + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000178 + multivalued: true + diss_carb_dioxide: + name: diss_carb_dioxide + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter + description: Concentration of dissolved carbon dioxide in the sample or liquid + portion of the sample + title: dissolved carbon dioxide + examples: + - value: 5 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - carbon + - dissolved + slot_uri: MIXS:0000436 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_hydrogen: + name: diss_hydrogen + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of dissolved hydrogen + title: dissolved hydrogen + examples: + - value: 0.3 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - dissolved + slot_uri: MIXS:0000179 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_inorg_carb: + name: diss_inorg_carb + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, milligram per liter, parts per million + description: Dissolved inorganic carbon concentration in the sample, typically + measured after filtering the sample using a 0.45 micrometer filter + title: dissolved inorganic carbon + examples: + - value: 2059 micromole per kilogram + from_schema: https://w3id.org/mixs + keywords: + - carbon + - dissolved + - inorganic + slot_uri: MIXS:0000434 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_inorg_nitro: + name: diss_inorg_nitro + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Concentration of dissolved inorganic nitrogen + title: dissolved inorganic nitrogen + examples: + - value: 761 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - dissolved + - inorganic + - nitrogen + slot_uri: MIXS:0000698 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_inorg_phosp: + name: diss_inorg_phosp + description: Concentration of dissolved inorganic phosphorus in the sample + title: dissolved inorganic phosphorus + examples: + - value: 56.5 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - dissolved + - inorganic + - phosphorus + slot_uri: MIXS:0000106 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_iron: + name: diss_iron + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Concentration of dissolved iron in the sample + title: dissolved iron + from_schema: https://w3id.org/mixs + keywords: + - dissolved + slot_uri: MIXS:0000139 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_org_carb: + name: diss_org_carb + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter + description: Concentration of dissolved organic carbon in the sample, liquid portion + of the sample, or aqueous phase of the fluid + title: dissolved organic carbon + examples: + - value: 197 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - carbon + - dissolved + - organic + slot_uri: MIXS:0000433 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_org_nitro: + name: diss_org_nitro + description: Dissolved organic nitrogen concentration measured as; total dissolved + nitrogen - NH4 - NO3 - NO2 + title: dissolved organic nitrogen + examples: + - value: 0.05 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - dissolved + - nitrogen + - organic + slot_uri: MIXS:0000162 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_oxygen: + name: diss_oxygen + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per kilogram, milligram per liter + description: Concentration of dissolved oxygen + title: dissolved oxygen + examples: + - value: 175 micromole per kilogram + from_schema: https://w3id.org/mixs + keywords: + - dissolved + - oxygen + slot_uri: MIXS:0000119 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_oxygen_fluid: + name: diss_oxygen_fluid + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per kilogram, milligram per liter + description: Concentration of dissolved oxygen in the oil field produced fluids + as it contributes to oxgen-corrosion and microbial activity (e.g. Mic) + title: dissolved oxygen in fluids + from_schema: https://w3id.org/mixs + keywords: + - dissolved + - oxygen + slot_uri: MIXS:0000438 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + dominant_hand: + name: dominant_hand + description: Dominant hand of the subject + title: dominant hand + examples: + - value: right + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000944 + range: DominantHandEnum + door_comp_type: + name: door_comp_type + description: The composite type of the door + title: door type, composite + examples: + - value: revolving + from_schema: https://w3id.org/mixs + keywords: + - door + - type + slot_uri: MIXS:0000795 + range: DoorCompTypeEnum + door_cond: + name: door_cond + description: The phsical condition of the door + title: door condition + examples: + - value: new + from_schema: https://w3id.org/mixs + keywords: + - condition + - door + slot_uri: MIXS:0000788 + range: DamagedRupturedEnum + door_direct: + name: door_direct + description: The direction the door opens + title: door direction of opening + examples: + - value: inward + from_schema: https://w3id.org/mixs + keywords: + - direction + - door + slot_uri: MIXS:0000789 + range: DoorDirectEnum + door_loc: + name: door_loc + description: The relative location of the door in the room + title: door location + examples: + - value: north + from_schema: https://w3id.org/mixs + keywords: + - door + - location + slot_uri: MIXS:0000790 + range: CompassDirections8Enum + door_mat: + name: door_mat + description: The material the door is composed of + title: door material + examples: + - value: wood + from_schema: https://w3id.org/mixs + keywords: + - door + - material + slot_uri: MIXS:0000791 + range: DoorMatEnum + door_move: + name: door_move + description: The type of movement of the door + title: door movement + examples: + - value: swinging + from_schema: https://w3id.org/mixs + keywords: + - door + slot_uri: MIXS:0000792 + range: DoorMoveEnum + door_size: + name: door_size + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The size of the door + title: door area or size + examples: + - value: 2.5 square meter + from_schema: https://w3id.org/mixs + keywords: + - area + - door + - size + slot_uri: MIXS:0000158 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + door_type: + name: door_type + description: The type of door material + title: door type + examples: + - value: wooden + from_schema: https://w3id.org/mixs + keywords: + - door + - type + slot_uri: MIXS:0000794 + range: DoorTypeEnum + door_type_metal: + name: door_type_metal + description: The type of metal door + title: door type, metal + examples: + - value: hollow + from_schema: https://w3id.org/mixs + keywords: + - door + - type + slot_uri: MIXS:0000796 + range: DoorTypeMetalEnum + door_type_wood: + name: door_type_wood + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The type of wood door + title: door type, wood + examples: + - value: battened + from_schema: https://w3id.org/mixs + keywords: + - door + - type + string_serialization: '[bettened and ledged|battened|ledged and braced|battened|ledged + and framed|battened|ledged, braced and frame|framed and paneled|glashed or sash|flush|louvered|wire + gauged]' + slot_uri: MIXS:0000797 + door_water_mold: + name: door_water_mold + description: Signs of the presence of mold or mildew on a door + title: door signs of water/mold + examples: + - value: presence of mold visible + from_schema: https://w3id.org/mixs + keywords: + - door + slot_uri: MIXS:0000793 + range: MoldVisibilityEnum + douche: + name: douche + description: Date of most recent douche + title: douche + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000967 + range: datetime + down_par: + name: down_par + annotations: + Preferred_unit: + tag: Preferred_unit + value: microEinstein per square meter per second, microEinstein per square + centimeter per second + description: Visible waveband radiance and irradiance measurements in the water + column + title: downward PAR + examples: + - value: 28.71 microEinstein per square meter per second + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000703 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + drainage_class: + name: drainage_class + description: Drainage classification from a standard system such as the USDA system + title: drainage classification + examples: + - value: well + from_schema: https://w3id.org/mixs + keywords: + - classification + slot_uri: MIXS:0001085 + range: DrainageClassEnum + drawings: + name: drawings + description: The buildings architectural drawings; if design is chosen, indicate + phase-conceptual, schematic, design development, and construction documents + title: drawings + examples: + - value: sketch + from_schema: https://w3id.org/mixs + keywords: + - drawings + slot_uri: MIXS:0000798 + range: DrawingsEnum + drug_usage: + name: drug_usage + annotations: + Expected_value: + tag: Expected_value + value: drug name;frequency + description: Any drug used by subject and the frequency of usage; can include + multiple drugs used + title: drug usage + examples: + - value: Lipitor;2/day + from_schema: https://w3id.org/mixs + keywords: + - drug + - use + string_serialization: '{text};{integer}/[year|month|week|day|hour]' + slot_uri: MIXS:0000894 + multivalued: true + efficiency_percent: + name: efficiency_percent + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Percentage of volatile solids removed from the anaerobic digestor + title: efficiency percent + from_schema: https://w3id.org/mixs + keywords: + - percent + slot_uri: MIXS:0000657 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + elev: + name: elev + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Elevation of the sampling site is its height above a fixed reference + point, most commonly the mean sea level. Elevation is mainly used when referring + to points on the earth's surface, while altitude is used for points above the + surface, such as an aircraft in flight or a spacecraft in orbit + title: elevation + examples: + - value: 100 meter + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - elevation + slot_uri: MIXS:0000093 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + elevator: + name: elevator + description: The number of elevators within the built structure + title: elevator count + examples: + - value: '2' + from_schema: https://w3id.org/mixs + keywords: + - count + slot_uri: MIXS:0000799 + range: integer + emulsions: + name: emulsions + annotations: + Expected_value: + tag: Expected_value + value: emulsion name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram per liter + description: Amount or concentration of substances such as paints, adhesives, + mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion + types + title: emulsions + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000660 + multivalued: true + encoded_traits: + name: encoded_traits + annotations: + Expected_value: + tag: Expected_value + value: 'for plasmid: antibiotic resistance; for phage: converting genes' + description: Should include key traits like antibiotic resistance or xenobiotic + degradation phenotypes for plasmids, converting genes for phage + title: encoded traits + examples: + - value: beta-lactamase class A + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000034 + range: string + enrichment_protocol: + name: enrichment_protocol + description: The microbiological workflow or protocol followed to test for the + presence or enumeration of the target microbial analyte(s). Please provide a + PubMed or DOI reference for published protocols + title: enrichment protocol + examples: + - value: 'BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria' + from_schema: https://w3id.org/mixs + keywords: + - enrichment + - protocol + slot_uri: MIXS:0001177 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + env_broad_scale: + name: env_broad_scale + description: 'Report the major environmental system the sample or specimen came + from. The system(s) identified should have a coarse spatial grain, to provide + the general environmental context of where the sampling was done (e.g. in the + desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. + EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' + title: broad-scale environmental context + examples: + - value: rangeland biome [ENVO:01000247] + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - context + - environmental + slot_uri: MIXS:0000012 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + env_local_scale: + name: env_local_scale + annotations: + Expected_value: + tag: Expected_value + value: Environmental entities having causal influences upon the entity at + time of sampling + description: 'Report the entity or entities which are in the sample or specimen + s local vicinity and which you believe have significant causal influences on + your sample or specimen. We recommend using EnvO terms which are of smaller + spatial grain than your entry for env_broad_scale. Terms, such as anatomical + sites, from other OBO Library ontologies which interoperate with EnvO (e.g. + UBERON) are accepted in this field. EnvO documentation about how to use the + field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' + title: local environmental context + examples: + - value: hillside [ENVO:01000333] + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - context + - environmental + slot_uri: MIXS:0000013 + required: true + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + env_medium: + name: env_medium + description: 'Report the environmental material(s) immediately surrounding the + sample or specimen at the time of sampling. We recommend using subclasses of + ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO + documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS + . Terms from other OBO ontologies are permissible as long as they reference + mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities + (e.g. a tree, a leaf, a table top)' + title: environmental medium + examples: + - value: bluegrass field soil [ENVO:00005789] + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - environmental + slot_uri: MIXS:0000014 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + env_monitoring_zone: + name: env_monitoring_zone + annotations: + Expected_value: + tag: Expected_value + value: ENVO + description: An environmental monitoring zone is a formal designation as part + of an environmental monitoring program, in which areas of a food production + facility are categorized, commonly as zones 1-4, based on likelihood or risk + of foodborne pathogen contamination. This field accepts terms listed under food + production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO). + Please add a term to indicate the environmental monitoring zone the sample was + taken from + title: food production environmental monitoring zone + examples: + - value: Zone 1 + from_schema: https://w3id.org/mixs + keywords: + - environmental + - food + - production + slot_uri: MIXS:0001254 + range: string + escalator: + name: escalator + description: The number of escalators within the built structure + title: escalator count + examples: + - value: '4' + from_schema: https://w3id.org/mixs + keywords: + - count + slot_uri: MIXS:0000800 + range: integer + estimated_size: + name: estimated_size + annotations: + Expected_value: + tag: Expected_value + value: number of base pairs + description: The estimated size of the genome prior to sequencing. Of particular + importance in the sequencing of (eukaryotic) genome which could remain in draft + form for a long or unspecified period + title: estimated size + examples: + - value: 300000 bp + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - size + string_serialization: '{integer} bp' + slot_uri: MIXS:0000024 + ethnicity: + name: ethnicity + annotations: + Expected_value: + tag: Expected_value + value: text recommend from Wikipedia list + description: A category of people who identify with each other, usually on the + basis of presumed similarities such as a common language, ancestry, history, + society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups + title: ethnicity + examples: + - value: native american + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000895 + range: string + multivalued: true + ethylbenzene: + name: ethylbenzene + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of ethylbenzene in the sample + title: ethylbenzene + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000155 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + exp_duct: + name: exp_duct + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The amount of exposed ductwork in the room + title: exposed ductwork + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000144 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + exp_pipe: + name: exp_pipe + description: The number of exposed pipes in the room + title: exposed pipes + from_schema: https://w3id.org/mixs + keywords: + - pipes + slot_uri: MIXS:0000220 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + experimental_factor: + name: experimental_factor + annotations: + Expected_value: + tag: Expected_value + value: text or EFO and/or OBI + description: Variable aspects of an experiment design that can be used to describe + an experiment, or set of experiments, in an increasingly detailed manner. This + field accepts ontology terms from Experimental Factor Ontology (EFO) and/or + Ontology for Biomedical Investigations (OBI) + title: experimental factor + examples: + - value: time series design [EFO:0001779] + in_subset: + - investigation + from_schema: https://w3id.org/mixs + keywords: + - experimental + - factor + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0000008 + range: string + multivalued: true + pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$ + ext_door: + name: ext_door + description: The number of exterior doors in the built structure + title: exterior door count + from_schema: https://w3id.org/mixs + keywords: + - count + - door + - exterior + slot_uri: MIXS:0000170 + range: integer + ext_wall_orient: + name: ext_wall_orient + description: The orientation of the exterior wall + title: orientations of exterior wall + examples: + - value: northwest + from_schema: https://w3id.org/mixs + keywords: + - exterior + - wall + slot_uri: MIXS:0000817 + range: CompassDirections8Enum + ext_window_orient: + name: ext_window_orient + description: The compass direction the exterior window of the room is facing + title: orientations of exterior window + examples: + - value: southwest + from_schema: https://w3id.org/mixs + keywords: + - exterior + - window + slot_uri: MIXS:0000818 + range: CompassDirections8Enum + extr_weather_event: + name: extr_weather_event + description: Unusual weather events that may have affected microbial populations. + Multiple terms can be separated by pipes, listed in reverse chronological order + title: extreme weather event + examples: + - value: hail + from_schema: https://w3id.org/mixs + keywords: + - event + - extreme + - weather + slot_uri: MIXS:0001141 + range: ExtrWeatherEventEnum + multivalued: true + extrachrom_elements: + name: extrachrom_elements + description: Do plasmids exist of significant phenotypic consequence (e.g. ones + that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids + (borrelia has 15+ plasmids) + title: extrachromosomal elements + examples: + - value: '5' + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000023 + range: integer + extreme_event: + name: extreme_event + description: Unusual physical events that may have affected microbial populations + title: history/extreme events + from_schema: https://w3id.org/mixs + keywords: + - event + - history + slot_uri: MIXS:0000320 + range: datetime + facility_type: + name: facility_type + description: Establishment details about the type of facility where the sample + was taken. This is independent of the specific product(s) within the facility + title: facility type + examples: + - value: manufacturing-processing + from_schema: https://w3id.org/mixs + keywords: + - facility + - type + slot_uri: MIXS:0001252 + range: FacilityTypeEnum + multivalued: true + fao_class: + name: fao_class + description: Soil classification from the FAO World soil distribution from International + Soil Reference and Information Centre (ISRIC). The list of available soil classifications + can be found at https://www.isric.org/explore/world-soil-distribution + title: soil_taxonomic/FAO classification + examples: + - value: Luvisols + from_schema: https://w3id.org/mixs + keywords: + - classification + slot_uri: MIXS:0001083 + range: FaoClassEnum + farm_equip: + name: farm_equip + description: List of equipment used for planting, fertilization, harvesting, irrigation, + land levelling, residue management, weeding or transplanting during the growing + season. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). + Multiple terms can be separated by pipes + title: farm equipment used + examples: + - value: combine harvester [AGRO:00000473] + from_schema: https://w3id.org/mixs + keywords: + - equipment + - farm + - use + slot_uri: MIXS:0001126 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + farm_equip_san: + name: farm_equip_san + annotations: + Expected_value: + tag: Expected_value + value: text or commercial name of sanitizer or class of sanitizer or active + ingredient in sanitizer + Preferred_unit: + tag: Preferred_unit + value: parts per million + description: Method used to sanitize growing and harvesting equipment. This can + including type and concentration of sanitizing solution. Multiple terms can + be separated by one or more pipes + title: farm equipment sanitization + examples: + - value: hot water pressure wash, hypochlorite solution, 50 parts per million + from_schema: https://w3id.org/mixs + keywords: + - equipment + - farm + string_serialization: '{text} {float} {unit}' + slot_uri: MIXS:0001124 + multivalued: true + farm_equip_san_freq: + name: farm_equip_san_freq + description: The number of times farm equipment is cleaned. Frequency of cleaning + might be on a Daily basis, Weekly, Monthly, Quarterly or Annually + title: farm equipment sanitization frequency + examples: + - value: Biweekly + from_schema: https://w3id.org/mixs + keywords: + - equipment + - farm + - frequency + slot_uri: MIXS:0001125 + range: string + farm_equip_shared: + name: farm_equip_shared + description: List of planting, growing or harvesting equipment shared with other + farms. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). + Multiple terms can be separated by pipes + title: equipment shared with other farms + examples: + - value: combine harvester [AGRO:00000473] + from_schema: https://w3id.org/mixs + keywords: + - equipment + - farm + slot_uri: MIXS:0001123 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + farm_water_source: + name: farm_water_source + description: Source of water used on the farm for irrigation of crops or watering + of livestock + title: farm watering water source + examples: + - value: well + description: was water well (ENVO:01000002) + from_schema: https://w3id.org/mixs + keywords: + - farm + - source + - water + slot_uri: MIXS:0001110 + range: FarmWaterSourceEnum + recommended: true + feat_pred: + name: feat_pred + description: Method used to predict UViGs features such as ORFs, integration site, + etc + title: feature prediction + examples: + - value: Prodigal;2.6.3;default parameters + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - feature + - predict + slot_uri: MIXS:0000061 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + ferm_chem_add: + name: ferm_chem_add + annotations: + Expected_value: + tag: Expected_value + value: chemical ingredient + description: Any chemicals that are added to the fermentation process to achieve + the desired final product + title: fermentation chemical additives + examples: + - value: salt + from_schema: https://w3id.org/mixs + keywords: + - fermentation + string_serialization: '{float} {unit}' + slot_uri: MIXS:0001185 + recommended: true + multivalued: true + ferm_chem_add_perc: + name: ferm_chem_add_perc + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: The amount of chemical added to the fermentation process + title: fermentation chemical additives percentage + examples: + - value: '0.01' + from_schema: https://w3id.org/mixs + keywords: + - fermentation + - percent + slot_uri: MIXS:0001186 + range: float + recommended: true + multivalued: true + ferm_headspace_oxy: + name: ferm_headspace_oxy + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: The amount of headspace oxygen in a fermentation vessel + title: fermentation headspace oxygen + examples: + - value: '0.05' + from_schema: https://w3id.org/mixs + keywords: + - fermentation + - oxygen + slot_uri: MIXS:0001187 + range: float + recommended: true + ferm_medium: + name: ferm_medium + description: The growth medium used for the fermented food fermentation process, + which supplies the required nutrients. Usually this includes a carbon and nitrogen + source, water, micronutrients and chemical additives + title: fermentation medium + examples: + - value: molasses + from_schema: https://w3id.org/mixs + keywords: + - fermentation + slot_uri: MIXS:0001188 + range: string + recommended: true + ferm_pH: + name: ferm_pH + description: The pH of the fermented food fermentation process + title: fermentation pH + examples: + - value: '4.5' + from_schema: https://w3id.org/mixs + keywords: + - fermentation + - ph + slot_uri: MIXS:0001189 + range: float + recommended: true + ferm_rel_humidity: + name: ferm_rel_humidity + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: The relative humidity of the fermented food fermentation process + title: fermentation relative humidity + comments: + - percent or float? + examples: + - value: 95% + from_schema: https://w3id.org/mixs + keywords: + - fermentation + - humidity + - relative + slot_uri: MIXS:0001190 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ferm_temp: + name: ferm_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The temperature of the fermented food fermentation process + title: fermentation temperature + examples: + - value: 22 degrees Celsius + from_schema: https://w3id.org/mixs + keywords: + - fermentation + - temperature + slot_uri: MIXS:0001191 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ferm_time: + name: ferm_time + annotations: + Preferred_unit: + tag: Preferred_unit + value: days + description: The time duration of the fermented food fermentation process + title: fermentation time + examples: + - value: P10D + from_schema: https://w3id.org/mixs + keywords: + - fermentation + - time + slot_uri: MIXS:0001192 + range: string + recommended: true + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + ferm_vessel: + name: ferm_vessel + description: The type of vessel used for containment of the fermentation + title: fermentation vessel + examples: + - value: steel drum + from_schema: https://w3id.org/mixs + keywords: + - fermentation + slot_uri: MIXS:0001193 + range: string + recommended: true + fertilizer_admin: + name: fertilizer_admin + description: Type of fertilizer or amendment added to the soil or water for the + purpose of improving substrate health and quality for plant growth. This field + accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062). + Multiple terms may apply and can be separated by pipes, listing in reverse chronological + order + title: fertilizer administration + examples: + - value: fish emulsion [AGRO:00000082] + from_schema: https://w3id.org/mixs + keywords: + - administration + slot_uri: MIXS:0001127 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + fertilizer_date: + name: fertilizer_date + description: Date of administration of soil amendment or fertilizer. Multiple + terms may apply and can be separated by pipes, listing in reverse chronological + order + title: fertilizer administration date + examples: + - value: '2018-05-11T10:00:00+01:00' + from_schema: https://w3id.org/mixs + keywords: + - administration + - date + slot_uri: MIXS:0001128 + range: datetime + fertilizer_regm: + name: fertilizer_regm + annotations: + Expected_value: + tag: Expected_value + value: fertilizer name;fertilizer amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving the use of fertilizers; should + include the name of fertilizer, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, and + the start and end time of the entire treatment; can include multiple fertilizer + regimens + title: fertilizer regimen + examples: + - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000556 + multivalued: true + field: + name: field + description: Name of the hydrocarbon field (e.g. Albacora) + title: field name + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000291 + range: string + recommended: true + filter_type: + name: filter_type + description: A device which removes solid particulates or airborne molecular contaminants + title: filter type + examples: + - value: HEPA + from_schema: https://w3id.org/mixs + keywords: + - filter + - type + slot_uri: MIXS:0000765 + range: FilterTypeEnum + required: true + multivalued: true + fire: + name: fire + description: Historical and/or physical evidence of fire + title: history/fire + from_schema: https://w3id.org/mixs + keywords: + - history + slot_uri: MIXS:0001086 + range: datetime + fireplace_type: + name: fireplace_type + description: A firebox with chimney + title: fireplace type + examples: + - value: wood burning + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000802 + range: FireplaceTypeEnum + flooding: + name: flooding + description: Historical and/or physical evidence of flooding + title: history/flooding + from_schema: https://w3id.org/mixs + keywords: + - history + slot_uri: MIXS:0000319 + range: datetime + floor_age: + name: floor_age + annotations: + Preferred_unit: + tag: Preferred_unit + value: years, weeks, days + description: The time period since installment of the carpet or flooring + title: floor age + from_schema: https://w3id.org/mixs + keywords: + - age + - floor + slot_uri: MIXS:0000164 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + floor_area: + name: floor_area + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The area of the floor space within the room + title: floor area + from_schema: https://w3id.org/mixs + keywords: + - area + - floor + slot_uri: MIXS:0000165 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + floor_cond: + name: floor_cond + description: The physical condition of the floor at the time of sampling; photos + or video preferred; use drawings to indicate location of damaged areas + title: floor condition + examples: + - value: new + from_schema: https://w3id.org/mixs + keywords: + - condition + - floor + slot_uri: MIXS:0000803 + range: DamagedEnum + floor_count: + name: floor_count + description: The number of floors in the building, including basements and mechanical + penthouse + title: floor count + from_schema: https://w3id.org/mixs + keywords: + - count + - floor + slot_uri: MIXS:0000225 + range: integer + floor_finish_mat: + name: floor_finish_mat + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The floor covering type; the finished surface that is walked on + title: floor finish material + examples: + - value: carpet + from_schema: https://w3id.org/mixs + keywords: + - floor + - material + string_serialization: '[tile|wood strip or parquet|carpet|rug|laminate wood|lineoleum|vinyl + composition tile|sheet vinyl|stone|bamboo|cork|terrazo|concrete|none;specify + unfinished|sealed|clear finish|paint]' + slot_uri: MIXS:0000804 + floor_struc: + name: floor_struc + description: Refers to the structural elements and subfloor upon which the finish + flooring is installed + title: floor structure + examples: + - value: concrete + from_schema: https://w3id.org/mixs + keywords: + - floor + slot_uri: MIXS:0000806 + range: FloorStrucEnum + floor_thermal_mass: + name: floor_thermal_mass + annotations: + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the floor to provide inertia against temperature fluctuations + title: floor thermal mass + from_schema: https://w3id.org/mixs + keywords: + - floor + - mass + slot_uri: MIXS:0000166 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + floor_water_mold: + name: floor_water_mold + description: Signs of the presence of mold or mildew in a room + title: floor signs of water/mold + examples: + - value: ceiling discoloration + from_schema: https://w3id.org/mixs + keywords: + - floor + slot_uri: MIXS:0000805 + range: FloorWaterMoldEnum + fluor: + name: fluor + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram chlorophyll a per cubic meter, volts + description: Raw or converted fluorescence of water + title: fluorescence + examples: + - value: 2.5 volts + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000704 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + foetal_health_stat: + name: foetal_health_stat + description: Specification of foetal health status, should also include abortion + title: amniotic fluid/foetal health status + from_schema: https://w3id.org/mixs + keywords: + - status + slot_uri: MIXS:0000275 + range: string + food_additive: + name: food_additive + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03412972 + description: A substance or substances added to food to maintain or improve safety + and freshness, to improve or maintain nutritional value, or improve taste, texture + and appearance. This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972). + Multiple terms can be separated by one or more pipes, but please consider limiting + this list to the top 5 ingredients listed in order as on the food label. See + also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors + title: food additive + examples: + - value: xanthan gum [FOODON:03413321] + from_schema: https://w3id.org/mixs + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001200 + multivalued: true + food_allergen_label: + name: food_allergen_label + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03510213 + description: A label indication that the product contains a recognized allergen. + This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213) + title: food allergen labeling + examples: + - value: food allergen labelling about crustaceans and products thereof [FOODON:03510215] + from_schema: https://w3id.org/mixs + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001201 + multivalued: true + food_clean_proc: + name: food_clean_proc + description: The process of cleaning food to separate other environmental materials + from the food source. Multiple terms can be separated by pipes + title: food cleaning process + examples: + - value: rinsed with water + description: was rinsed with water|scrubbed with brush + - value: scrubbed with brush + description: was rinsed with water|scrubbed with brush + from_schema: https://w3id.org/mixs + keywords: + - food + - process + slot_uri: MIXS:0001182 + range: FoodCleanProcEnum + food_contact_surf: + name: food_contact_surf + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03500010 + description: The specific container or coating materials in direct contact with + the food. Multiple values can be assigned. This field accepts terms listed + under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010) + title: food contact surface + examples: + - value: cellulose acetate [FOODON:03500034] + from_schema: https://w3id.org/mixs + keywords: + - food + - surface + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001131 + multivalued: true + food_contain_wrap: + name: food_contain_wrap + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03490100 + description: Type of container or wrapping defined by the main container material, + the container form, and the material of the liner lids or ends. Also type of + container or wrapping by form; prefer description by material first, then by + form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100) + title: food container or wrapping + examples: + - value: Plastic shrink-pack [FOODON:03490137] + from_schema: https://w3id.org/mixs + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001132 + food_cooking_proc: + name: food_cooking_proc + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03450002 + description: The transformation of raw food by the application of heat. This field + accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002) + title: food cooking process + examples: + - value: food blanching [FOODON:03470175] + from_schema: https://w3id.org/mixs + keywords: + - food + - process + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001202 + multivalued: true + food_dis_point: + name: food_dis_point + description: 'A reference to a place on the Earth, by its name or by its geographical + location that refers to a distribution point along the food chain. This field + accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). + Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations + in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing + Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012' + title: food distribution point geographic location + examples: + - value: 'USA: Delmarva, Peninsula' + from_schema: https://w3id.org/mixs + keywords: + - food + - geographic + - location + slot_uri: MIXS:0001203 + range: string + multivalued: true + pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$' + structured_pattern: + syntax: '^{text}: {text}, {text}$' + interpolated: true + partial_match: true + food_dis_point_city: + name: food_dis_point_city + annotations: + Expected_value: + tag: Expected_value + value: GAZ:00000448 + description: 'A reference to a place on the Earth, by its name or by its geographical + location that refers to a distribution point along the food chain. This field + accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). + Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations + in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing + Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012' + title: food distribution point geographic location (city) + examples: + - value: Atlanta[GAZ:00004445] + from_schema: https://w3id.org/mixs + keywords: + - food + - geographic + - location + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001204 + multivalued: true + food_harvest_proc: + name: food_harvest_proc + description: A harvesting process is a process which takes in some food material + from an individual or community of plant or animal organisms in a given context + and time, and outputs a precursor or consumable food product. This may include + a part of an organism or the whole, and may involve killing the organism + title: Food harvesting process + examples: + - value: hand-picked + from_schema: https://w3id.org/mixs + keywords: + - food + - process + slot_uri: MIXS:0001133 + range: string + multivalued: true + food_ingredient: + name: food_ingredient + annotations: + Expected_value: + tag: Expected_value + value: FOODON + description: In this field, please list individual ingredients for multi-component + food [FOODON:00002501] and simple foods that is not captured in food_type. Please + use terms that are present in FoodOn. Multiple terms can be separated by one + or more pipes |, but please consider limiting this list to the top 5 ingredients + listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors + title: food ingredient + examples: + - value: bean (whole) [FOODON:00002753] + from_schema: https://w3id.org/mixs + keywords: + - food + - ingredient + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001205 + multivalued: true + food_name_status: + name: food_name_status + description: A datum indicating that use of a food product name is regulated in + some legal jurisdiction. This field accepts terms listed under food product + name legal status (http://purl.obolibrary.org/obo/FOODON_03530087) + title: food product name legal status + examples: + - value: protected geographic indication [FOODON:03530256] + from_schema: https://w3id.org/mixs + keywords: + - food + - product + - status + slot_uri: MIXS:0001206 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_origin: + name: food_origin + description: A reference to a place on the Earth, by its name or by its geographical + location that describes the origin of the food commodity, either in terms of + its cultivation or production. This field accepts terms listed under geographic + location (http://purl.obolibrary.org/obo/GAZ_00000448) + title: food product origin geographic location + examples: + - value: 'USA: Delmarva, Peninsula' + from_schema: https://w3id.org/mixs + keywords: + - food + - geographic + - location + - product + slot_uri: MIXS:0001207 + range: string + pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$' + structured_pattern: + syntax: '^{text}: {text}, {text}$' + interpolated: true + partial_match: true + food_pack_capacity: + name: food_pack_capacity + annotations: + Preferred_unit: + tag: Preferred_unit + value: grams + description: The maximum number of product units within a package + title: food package capacity + examples: + - value: 454 grams + from_schema: https://w3id.org/mixs + keywords: + - food + - package + slot_uri: MIXS:0001208 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + food_pack_integrity: + name: food_pack_integrity + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03530218 + description: A term label and term id to describe the state of the packing material + and text to explain the exact condition. This field accepts terms listed under + food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218) + title: food packing medium integrity + examples: + - value: food packing medium compromised [FOODON:00002517] + from_schema: https://w3id.org/mixs + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001209 + multivalued: true + food_pack_medium: + name: food_pack_medium + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03480020 + description: The medium in which the food is packed for preservation and handling + or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. + The packing medium may provide a controlled environment for the food. It may + also serve to improve palatability and consumer appeal. This includes edible + packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide), + vacuum packed, or packed with aerosol propellant. This field accepts terms under + food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple + terms may apply and can be separated by pipes + title: food packing medium + from_schema: https://w3id.org/mixs + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001134 + multivalued: true + food_preserv_proc: + name: food_preserv_proc + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03470107 + description: The methods contributing to the prevention or retardation of microbial, + enzymatic or oxidative spoilage and thus to the extension of shelf life. This + field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107) + title: food preservation process + examples: + - value: food slow freezing [FOODON:03470128] + from_schema: https://w3id.org/mixs + keywords: + - food + - process + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001135 + multivalued: true + food_prior_contact: + name: food_prior_contact + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03530077 + description: The material the food contacted (e.g., was processed in) prior to + packaging. This field accepts terms listed under material of contact prior to + food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper + descriptor is not listed please use text to describe the material of contact + prior to food packaging + title: material of contact prior to food packaging + examples: + - value: processed in stainless steel container [FOODON:03530081] + from_schema: https://w3id.org/mixs + keywords: + - food + - material + - prior + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001210 + multivalued: true + food_prod: + name: food_prod + description: Descriptors of the food production system or of the agricultural + environment and growing conditions related to the farm production system, such + as wild caught, organic, free-range, industrial, dairy, beef, domestic or cultivated + food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206). + Multiple terms may apply and can be separated by pipes + title: food production system characteristics + examples: + - value: organic plant cultivation [FOODON:03530253] + from_schema: https://w3id.org/mixs + keywords: + - food + - production + slot_uri: MIXS:0001211 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_prod_char: + name: food_prod_char + description: Descriptors of the food production system such as wild caught, free-range, + organic, free-range, industrial, dairy, beef + title: food production characteristics + examples: + - value: wild caught + from_schema: https://w3id.org/mixs + keywords: + - food + - production + slot_uri: MIXS:0001136 + range: string + multivalued: true + food_prod_synonym: + name: food_prod_synonym + description: Other names by which the food product is known by (e.g., regional + or non-English names) + title: food product synonym + examples: + - value: pinot gris + from_schema: https://w3id.org/mixs + keywords: + - food + - product + slot_uri: MIXS:0001212 + range: string + multivalued: true + food_product_qual: + name: food_product_qual + description: Descriptors for describing food visually or via other senses, which + is useful for tasks like food inspection where little prior knowledge of how + the food came to be is available. Some terms like "food (frozen)" are both a + quality descriptor and the output of a process. This field accepts terms listed + under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454) + title: food product by quality + examples: + - value: raw [FOODON:03311126] + from_schema: https://w3id.org/mixs + keywords: + - food + - product + - quality + slot_uri: MIXS:0001213 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_product_type: + name: food_product_type + annotations: + Expected_value: + tag: Expected_value + value: FOODON:00001002 or FOODON:03309997 + description: A food product type is a class of food products that is differentiated + by its food composition (e.g., single- or multi-ingredient), processing and/or + consumption characteristics. This does not include brand name products but it + may include generic food dish categories. This field accepts terms under food + product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related + to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). + If the proper descriptor is not listed please use text to describe the food + type. Multiple terms can be separated by one or more pipes + title: food product type + from_schema: https://w3id.org/mixs + keywords: + - food + - product + - type + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001184 + food_quality_date: + name: food_quality_date + annotations: + Expected_value: + tag: Expected_value + value: enumeration, date + description: The date recommended for the use of the product while at peak quality, + this date is not a reflection of safety unless used on infant formula this date + is not a reflection of safety and is typically labeled on a food product as + "best if used by," best by," "use by," or "freeze by." + title: food quality date + examples: + - value: best by 2020-05-24 + from_schema: https://w3id.org/mixs + keywords: + - date + - food + - quality + string_serialization: '[best by|best if used by|freeze by|use by]; date' + slot_uri: MIXS:0001178 + food_source: + name: food_source + annotations: + Expected_value: + tag: Expected_value + value: FOODON term + description: Type of plant or animal from which the food product or its major + ingredient is derived or a chemical food source [FDA CFSAN 1995] + title: food source + from_schema: https://w3id.org/mixs + keywords: + - food + - source + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0001139 + food_source_age: + name: food_source_age + annotations: + Preferred_unit: + tag: Preferred_unit + value: days + description: The age of the food source host organim. Depending on the type of + host organism, age may be more appropriate to report in days, weeks, or years + title: food source age + comments: + - ISO 8601 period or measurement value? + examples: + - value: 6 months + from_schema: https://w3id.org/mixs + keywords: + - age + - food + - source + slot_uri: MIXS:0001251 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + food_trace_list: + name: food_trace_list + description: The FDA is proposing to establish additional traceability recordkeeping + requirements (beyond what is already required in existing regulations) for persons + who manufacture, process, pack, or hold foods the Agency has designated for + inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies + the foods for which the additional traceability records described in the proposed + rule would be required. The term Food Traceability List (FTL) refers not only + to the foods specifically listed (https://www.fda.gov/media/142303/download), + but also to any foods that contain listed foods as ingredients + title: food traceability list category + examples: + - value: tropical tree fruits + from_schema: https://w3id.org/mixs + keywords: + - food + slot_uri: MIXS:0001214 + range: FoodTraceListEnum + food_trav_mode: + name: food_trav_mode + description: A descriptor for the method of movement of food commodity along the + food distribution system. This field accepts terms listed under travel mode + (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is + not listed please use text to describe the mode of travel. Multiple terms can + be separated by one or more pipes + title: food shipping transportation method + examples: + - value: train travel [GENEPIO:0001060] + from_schema: https://w3id.org/mixs + keywords: + - food + - method + - transport + slot_uri: MIXS:0001137 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_trav_vehic: + name: food_trav_vehic + annotations: + Expected_value: + tag: Expected_value + value: ENVO:01000604 + description: A descriptor for the mobile machine which is used to transport food + commodities along the food distribution system. This field accepts terms listed + under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper + descrptor is not listed please use text to describe the mode of travel. Multiple + terms can be separated by one or more pipes + title: food shipping transportation vehicle + examples: + - value: aircraft [ENVO:01001488]|car [ENVO:01000605] + from_schema: https://w3id.org/mixs + keywords: + - food + - transport + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001138 + multivalued: true + food_treat_proc: + name: food_treat_proc + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03460111 + description: Used to specifically characterize a food product based on the treatment + or processes applied to the product or any indexed ingredient. The processes + include adding, substituting or removing components or modifying the food or + component, e.g., through fermentation. Multiple values can be assigned. This + fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111) + title: food treatment process + examples: + - value: gluten removal process [FOODON:03460750] + from_schema: https://w3id.org/mixs + keywords: + - food + - process + - treatment + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001140 + multivalued: true + freq_clean: + name: freq_clean + description: The number of times the sample location is cleaned. Frequency of + cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually + title: frequency of cleaning + examples: + - value: Daily + from_schema: https://w3id.org/mixs + keywords: + - frequency + slot_uri: MIXS:0000226 + range: FreqCleanEnum + freq_cook: + name: freq_cook + description: The number of times a meal is cooked per week + title: frequency of cooking + from_schema: https://w3id.org/mixs + keywords: + - frequency + slot_uri: MIXS:0000227 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + fungicide_regm: + name: fungicide_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of fungicides; should include + the name of fungicide, amount administered, treatment regimen including how + many times the treatment was repeated, how long each treatment lasted, and the + start and end time of the entire treatment; can include multiple fungicide regimens + title: fungicide regimen + examples: + - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + slot_uri: MIXS:0000557 + range: string + multivalued: true + furniture: + name: furniture + description: The types of furniture present in the sampled room + title: furniture + examples: + - value: chair + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000807 + range: FurnitureEnum + gaseous_environment: + name: gaseous_environment + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Use of conditions with differing gaseous environments; should include + the name of gaseous compound, amount administered, treatment duration, interval + and total experimental duration; can include multiple gaseous environment regimens + title: gaseous environment + examples: + - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - environment + slot_uri: MIXS:0000558 + range: string + multivalued: true + gaseous_substances: + name: gaseous_substances + annotations: + Expected_value: + tag: Expected_value + value: gaseous substance name;measurement value + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Amount or concentration of substances such as hydrogen sulfide, carbon + dioxide, methane, etc.; can include multiple substances + title: gaseous substances + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000661 + multivalued: true + gastrointest_disord: + name: gastrointest_disord + description: History of gastrointestinal tract disorders; can include multiple + disorders. History of blood disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + gastrointestinal system disease (https://disease-ontology.org/?id=DOID:77) + title: gastrointestinal tract disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000280 + range: string + multivalued: true + gender_restroom: + name: gender_restroom + description: The gender type of the restroom + title: gender of restroom + examples: + - value: male + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000808 + range: GenderRestroomEnum + genetic_mod: + name: genetic_mod + annotations: + Expected_value: + tag: Expected_value + value: PMID, DOI, URL or text + description: Genetic modifications of the genome of an organism, which may occur + naturally by spontaneous mutation, or be introduced by some experimental means, + e.g. specification of a transgene or the gene knocked-out or details of transient + transfection + title: genetic modification + examples: + - value: aox1A transgenic + from_schema: https://w3id.org/mixs + string_serialization: '{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0000859 + geo_loc_name: + name: geo_loc_name + description: The geographical origin of the sample as defined by the country or + sea name followed by specific region name. Country or sea names should be chosen + from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology + (http://purl.bioontology.org/ontology/GAZ) + title: geographic location (country and/or sea,region) + examples: + - value: 'USA: Maryland, Bethesda' + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - geographic + - location + slot_uri: MIXS:0000010 + range: string + required: true + pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$' + structured_pattern: + syntax: '^{text}: {text}, {text}$' + interpolated: true + partial_match: true + gestation_state: + name: gestation_state + description: Specification of the gestation state + title: amniotic fluid/gestation state + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000272 + range: string + glucosidase_act: + name: glucosidase_act + annotations: + Preferred_unit: + tag: Preferred_unit + value: mol per liter per hour + description: Measurement of glucosidase activity + title: glucosidase activity + examples: + - value: 5 mol per liter per hour + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000137 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + gravidity: + name: gravidity + description: Whether or not subject is gravid, and if yes date due or date post-conception, + specifying which is used + title: gravidity + examples: + - value: yes;due date:2018-05-11 + from_schema: https://w3id.org/mixs + string_serialization: '{boolean};{timestamp}' + slot_uri: MIXS:0000875 + gravity: + name: gravity + annotations: + Expected_value: + tag: Expected_value + value: gravity factor value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: meter per square second, g + description: Information about treatment involving use of gravity factor to study + various types of responses in presence, absence or modified levels of gravity; + treatment regimen including how many times the treatment was repeated, how long + each treatment lasted, and the start and end time of the entire treatment; can + include multiple treatments + title: gravity + examples: + - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000559 + multivalued: true + growth_facil: + name: growth_facil + annotations: + Expected_value: + tag: Expected_value + value: free text or CO + description: 'Type of facility where the sampled plant was grown; controlled vocabulary: + growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively + use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research' + title: growth facility + examples: + - value: Growth chamber [CO_715:0000189] + from_schema: https://w3id.org/mixs + keywords: + - facility + - growth + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001043 + growth_habit: + name: growth_habit + description: Characteristic shape, appearance or growth form of a plant species + title: growth habit + examples: + - value: spreading + from_schema: https://w3id.org/mixs + keywords: + - growth + slot_uri: MIXS:0001044 + range: GrowthHabitEnum + growth_hormone_regm: + name: growth_hormone_regm + annotations: + Expected_value: + tag: Expected_value + value: growth hormone name;growth hormone amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of growth hormones; should + include the name of growth hormone, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, and + the start and end time of the entire treatment; can include multiple growth + hormone regimens + title: growth hormone regimen + examples: + - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - growth + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000560 + multivalued: true + growth_medium: + name: growth_medium + description: A liquid or gel containing nutrients, salts, and other factors formulated + to support the growth of microorganisms, cells, or plants (National Cancer Institute + Thesaurus). The name of the medium used to grow the microorganism + title: growth medium + examples: + - value: LB broth + from_schema: https://w3id.org/mixs + keywords: + - growth + slot_uri: MIXS:0001108 + range: string + gynecologic_disord: + name: gynecologic_disord + description: History of gynecological disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + female reproductive system disease (https://disease-ontology.org/?id=DOID:229) + title: gynecological disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000288 + range: string + multivalued: true + hall_count: + name: hall_count + description: The total count of hallways and cooridors in the built structure + title: hallway/corridor count + from_schema: https://w3id.org/mixs + keywords: + - corridor + - count + - hallway + slot_uri: MIXS:0000228 + range: integer + handidness: + name: handidness + description: The handidness of the individual sampled + title: handidness + examples: + - value: right handedness + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000809 + range: HandidnessEnum + hc_produced: + name: hc_produced + description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, + etc). If "other" is specified, please propose entry in "additional info" field + title: hydrocarbon type produced + examples: + - value: Gas + from_schema: https://w3id.org/mixs + keywords: + - hydrocarbon + - type + slot_uri: MIXS:0000989 + range: HcProducedEnum + required: true + hcr: + name: hcr + description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR + defined as a natural environmental feature containing large amounts of hydrocarbons + at high concentrations potentially suitable for commercial exploitation. This + term should not be confused with the Hydrocarbon Occurrence term which also + includes hydrocarbon-rich environments with currently limited commercial interest + such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose + entry in "additional info" field + title: hydrocarbon resource type + examples: + - value: Oil Sand + from_schema: https://w3id.org/mixs + keywords: + - hydrocarbon + - resource + - type + slot_uri: MIXS:0000988 + range: HcrEnum + required: true + hcr_fw_salinity: + name: hcr_fw_salinity + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Original formation water salinity (prior to secondary recovery e.g. + Waterflooding) expressed as TDS + title: formation water salinity + from_schema: https://w3id.org/mixs + keywords: + - salinity + - water + slot_uri: MIXS:0000406 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + hcr_geol_age: + name: hcr_geol_age + description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). + If "other" is specified, please propose entry in "additional info" field' + title: hydrocarbon resource geological age + examples: + - value: Silurian + from_schema: https://w3id.org/mixs + keywords: + - age + - hydrocarbon + - resource + slot_uri: MIXS:0000993 + range: GeolAgeEnum + recommended: true + hcr_pressure: + name: hcr_pressure + annotations: + Preferred_unit: + tag: Preferred_unit + value: atmosphere, kilopascal + description: Original pressure of the hydrocarbon resource + title: hydrocarbon resource original pressure + from_schema: https://w3id.org/mixs + keywords: + - hydrocarbon + - pressure + - resource + slot_uri: MIXS:0000395 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{float} *- *{float} {unit}$ + interpolated: true + partial_match: true + hcr_temp: + name: hcr_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Original temperature of the hydrocarbon resource + title: hydrocarbon resource original temperature + examples: + - value: 150-295 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - hydrocarbon + - resource + - temperature + slot_uri: MIXS:0000393 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{float} *- *{float} {unit}$ + interpolated: true + partial_match: true + heat_cool_type: + name: heat_cool_type + description: Methods of conditioning or heating a room or building + title: heating and cooling system type + examples: + - value: heat pump + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000766 + range: HeatCoolTypeEnum + required: true + multivalued: true + heat_deliv_loc: + name: heat_deliv_loc + description: The location of heat delivery within the room + title: heating delivery locations + examples: + - value: north + from_schema: https://w3id.org/mixs + keywords: + - delivery + - location + - locations + slot_uri: MIXS:0000810 + range: CompassDirections8Enum + heat_sys_deliv_meth: + name: heat_sys_deliv_meth + description: The method by which the heat is delivered through the system + title: heating system delivery method + examples: + - value: radiant + from_schema: https://w3id.org/mixs + keywords: + - delivery + - method + slot_uri: MIXS:0000812 + range: HeatSysDelivMethEnum + heat_system_id: + name: heat_system_id + description: The heating system identifier + title: heating system identifier + from_schema: https://w3id.org/mixs + keywords: + - identifier + slot_uri: MIXS:0000833 + range: integer + heavy_metals: + name: heavy_metals + annotations: + Expected_value: + tag: Expected_value + value: heavy metal name;measurement value unit + Preferred_unit: + tag: Preferred_unit + value: microgram per gram + description: Heavy metals present in the sequenced sample and their concentrations. + For multiple heavy metals and concentrations, add multiple copies of this field + title: extreme_unusual_properties/heavy metals + examples: + - value: mercury;0.09 micrograms per gram + from_schema: https://w3id.org/mixs + keywords: + - extreme + - properties + - unusual + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000652 + multivalued: true + heavy_metals_meth: + name: heavy_metals_meth + description: Reference or method used in determining heavy metals + title: extreme_unusual_properties/heavy metals method + from_schema: https://w3id.org/mixs + keywords: + - extreme + - method + - properties + - unusual + slot_uri: MIXS:0000343 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + height_carper_fiber: + name: height_carper_fiber + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter + description: The average carpet fiber height in the indoor environment + title: height carpet fiber mat + from_schema: https://w3id.org/mixs + keywords: + - height + slot_uri: MIXS:0000167 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + herbicide_regm: + name: herbicide_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of herbicides; information + about treatment involving use of growth hormones; should include the name of + herbicide, amount administered, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple regimens + title: herbicide regimen + examples: + - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + slot_uri: MIXS:0000561 + range: string + multivalued: true + horizon_meth: + name: horizon_meth + description: Reference or method used in determining the horizon + title: horizon method + from_schema: https://w3id.org/mixs + keywords: + - horizon + - method + slot_uri: MIXS:0000321 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + host_age: + name: host_age + annotations: + Preferred_unit: + tag: Preferred_unit + value: year, day, hour + description: Age of host at the time of sampling; relevant scale depends on species + and study, e.g. Could be seconds for amoebae or centuries for trees + title: host age + from_schema: https://w3id.org/mixs + keywords: + - age + - host + - host. + slot_uri: MIXS:0000255 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_body_habitat: + name: host_body_habitat + description: Original body habitat where the sample was obtained from + title: host body habitat + from_schema: https://w3id.org/mixs + keywords: + - body + - habitat + - host + - host. + slot_uri: MIXS:0000866 + range: string + host_body_mass_index: + name: host_body_mass_index + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram per square meter + description: Body mass index, calculated as weight/(height)squared + title: host body-mass index + examples: + - value: 22 kilogram per square meter + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000317 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_body_product: + name: host_body_product + annotations: + Expected_value: + tag: Expected_value + value: FMA or UBERON + description: Substance produced by the body, e.g. Stool, mucus, where the sample + was obtained from. Use terms from the foundational model of anatomy ontology + (fma) or Uber-anatomy ontology (UBERON) + title: host body product + examples: + - value: mucus [FMA:66938] + from_schema: https://w3id.org/mixs + keywords: + - body + - host + - host. + - product + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000888 + host_body_site: + name: host_body_site + annotations: + Expected_value: + tag: Expected_value + value: FMA or UBERON + description: Name of body site where the sample was obtained from, such as a specific + organ or tissue (tongue, lung etc...). Use terms from the foundational model + of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON) + title: host body site + from_schema: https://w3id.org/mixs + keywords: + - body + - host + - site + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000867 + host_body_temp: + name: host_body_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Core body temperature of the host when sample was collected + title: host body temperature + from_schema: https://w3id.org/mixs + keywords: + - body + - host + - host. + - temperature + slot_uri: MIXS:0000274 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_cellular_loc: + name: host_cellular_loc + description: 'The localization of the symbiotic host organism within the host + from which it was sampled: e.g. intracellular if the symbiotic host organism + is localized within the cells or extracellular if the symbiotic host organism + is localized outside of cells' + title: host cellular location + examples: + - value: extracellular + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - location + slot_uri: MIXS:0001313 + range: HostCellularLocEnum + recommended: true + host_color: + name: host_color + description: The color of host + title: host color + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000260 + range: string + host_common_name: + name: host_common_name + annotations: + Preferred_unit: + tag: Preferred_unit + value: '' + description: Common name of the host + title: host common name + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000248 + range: string + host_dependence: + name: host_dependence + description: Type of host dependence for the symbiotic host organism to its host + title: host dependence + examples: + - value: obligate + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0001315 + range: HostDependenceEnum + required: true + host_diet: + name: host_diet + description: Type of diet depending on the host, for animals omnivore, herbivore + etc., for humans high-fat, meditteranean etc.; can include multiple diet types + title: host diet + from_schema: https://w3id.org/mixs + keywords: + - diet + - host + - host. + slot_uri: MIXS:0000869 + range: string + multivalued: true + host_disease_stat: + name: host_disease_stat + annotations: + Expected_value: + tag: Expected_value + value: disease name or Disease Ontology term + description: List of diseases with which the host has been diagnosed; can include + multiple diagnoses. The value of the field depends on host; for humans the terms + should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, + non-human host diseases are free text + title: host disease status + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - disease + - host + - host. + - status + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0000031 + host_dry_mass: + name: host_dry_mass + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Measurement of dry mass + title: host dry mass + examples: + - value: 500 gram + from_schema: https://w3id.org/mixs + keywords: + - dry + - host + - host. + - mass + slot_uri: MIXS:0000257 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_fam_rel: + name: host_fam_rel + annotations: + Expected_value: + tag: Expected_value + value: relationship type;arbitrary identifier + description: Relationships to other hosts in the same study; can include multiple + relationships + title: host family relationship + from_schema: https://w3id.org/mixs + keywords: + - family + - host + - host. + - relationship + string_serialization: '{text};{text}' + slot_uri: MIXS:0000872 + multivalued: true + host_genotype: + name: host_genotype + description: Observed genotype + title: host genotype + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000365 + range: string + host_growth_cond: + name: host_growth_cond + description: Literature reference giving growth conditions of the host + title: host growth conditions + examples: + - value: https://academic.oup.com/icesjms/article/68/2/349/617247 + from_schema: https://w3id.org/mixs + keywords: + - condition + - growth + - host + - host. + slot_uri: MIXS:0000871 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + host_height: + name: host_height + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter, millimeter, meter + description: The height of subject + title: host height + from_schema: https://w3id.org/mixs + keywords: + - height + - host + - host. + slot_uri: MIXS:0000264 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_hiv_stat: + name: host_hiv_stat + annotations: + Expected_value: + tag: Expected_value + value: HIV status;HAART initiation status + description: HIV status of subject, if yes HAART initiation status should also + be indicated as [YES or NO] + title: host HIV status + examples: + - value: yes;yes + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - status + string_serialization: '{boolean};{boolean}' + slot_uri: MIXS:0000265 + host_infra_spec_name: + name: host_infra_spec_name + description: Taxonomic information about the host below subspecies level + title: host infra-specific name + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000253 + range: string + host_infra_spec_rank: + name: host_infra_spec_rank + description: Taxonomic rank information about the host below subspecies level, + such as variety, form, rank etc + title: host infra-specific rank + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - rank + slot_uri: MIXS:0000254 + range: string + host_last_meal: + name: host_last_meal + annotations: + Expected_value: + tag: Expected_value + value: content;duration + description: Content of last meal and time since feeding; can include multiple + values + title: host last meal + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + string_serialization: '{text};{duration}' + slot_uri: MIXS:0000870 + multivalued: true + host_length: + name: host_length + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter, millimeter, meter + description: The length of subject + title: host length + examples: + - value: 1 meter + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - length + slot_uri: MIXS:0000256 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_life_stage: + name: host_life_stage + annotations: + Expected_value: + tag: Expected_value + value: stage + description: Description of life stage of host + title: host life stage + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - life + slot_uri: MIXS:0000251 + range: string + host_number: + name: host_number + annotations: + Expected_value: + tag: Expected_value + value: count + description: Number of symbiotic host individuals pooled at the time of collection + title: host number individual + examples: + - value: '3' + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - number + string_serialization: '{float} m' + slot_uri: MIXS:0001305 + host_occupation: + name: host_occupation + description: Most frequent job performed by subject + title: host occupation + comments: + - Couldn't convert host_occupation with value veterinary to integer + - almost all host_occupation values in the NCBI biosample_set are strings, not + integers + examples: + - value: veterinary + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000896 + range: string + host_of_host_coinf: + name: host_of_host_coinf + annotations: + Expected_value: + tag: Expected_value + value: species name of coinfecting organism(s) + description: The taxonomic name of any coinfecting organism observed in a symbiotic + relationship with the host of the sampled host organism. e.g. where a sample + collected from a host trematode species (A) which was collected from a host_of_host + fish (B) that was also infected with a nematode (C), the value here would be + (C) the nematode {species name} or {common name}. Multiple co-infecting species + may be added in a comma-separated list. For listing symbiotic organisms associated + with the host (A) use the term Observed host symbiont + title: observed coinfecting organisms in host of host + examples: + - value: Maritrema novaezealandense + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - observed + - organism + slot_uri: MIXS:0001310 + range: string + host_of_host_disease: + name: host_of_host_disease + annotations: + Expected_value: + tag: Expected_value + value: disease name or Disease Ontology term + description: List of diseases with which the host of the symbiotic host organism + has been diagnosed; can include multiple diagnoses. The value of the field depends + on host; for humans the terms should be chosen from the DO (Human Disease Ontology) + at https://www.disease-ontology.org, non-human host diseases are free text + title: host of the symbiotic host disease status + examples: + - value: rabies [DOID:11260] + from_schema: https://w3id.org/mixs + keywords: + - disease + - host + - host. + - status + - symbiosis + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0001319 + multivalued: true + host_of_host_env_loc: + name: host_of_host_env_loc + annotations: + Expected_value: + tag: Expected_value + value: UBERON term(s), multiple values can be separated by pipes + description: For a symbiotic host organism the local anatomical environment within + its host may have causal influences. Report the anatomical entity(s) which are + in the direct environment of the symbiotic host organism being sampled and which + you believe have significant causal influences on your sample or specimen. For + example, if the symbiotic host organism being sampled is an intestinal worm, + its local environmental context will be the term for intestine from UBERON (http://uberon.github.io/) + title: host of the symbiotic host local environmental context + examples: + - value: small intestine[uberon:0002108] + from_schema: https://w3id.org/mixs + keywords: + - context + - environmental + - host + - host. + - symbiosis + string_serialization: small intestine [UBERON:0002108] + slot_uri: MIXS:0001325 + multivalued: true + host_of_host_env_med: + name: host_of_host_env_med + annotations: + Expected_value: + tag: Expected_value + value: An ontology term for a material such as a tissue type or excreted substance + description: 'Report the environmental material(s) immediately surrounding the + symbiotic host organism at the time of sampling. This usually will be a tissue + or substance type from the host, but may be another material if the symbiont + is external to the host. We recommend using classes from the UBERON ontology, + but subclasses of ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483) + may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS + . Terms from other OBO ontologies are permissible as long as they reference + mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities + (e.g. intestines, heart).MIxS . Terms from other OBO ontologies are permissible + as long as they reference mass/volume nouns (e.g. air, water, blood) and not + discrete, countable entities (e.g. intestines, heart)' + title: host of the symbiotic host environemental medium + examples: + - value: feces[uberon:0001988] + from_schema: https://w3id.org/mixs + keywords: + - environmental + - host + - host. + - symbiosis + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0001326 + host_of_host_fam_rel: + name: host_of_host_fam_rel + annotations: + Expected_value: + tag: Expected_value + value: relationship type;arbitrary identifier + description: Familial relationship of the host of the symbiotic host organisms + to other hosts of symbiotic host organism in the same study; can include multiple + relationships + title: host of the symbiotic host family relationship + from_schema: https://w3id.org/mixs + keywords: + - family + - host + - host. + - relationship + - symbiosis + string_serialization: '{text};{text}' + slot_uri: MIXS:0001328 + multivalued: true + host_of_host_geno: + name: host_of_host_geno + description: Observed genotype of the host of the symbiotic host organism + title: host of the symbiotic host genotype + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001331 + range: string + host_of_host_gravid: + name: host_of_host_gravid + annotations: + Expected_value: + tag: Expected_value + value: gravidity status;timestamp + description: Whether or not the host of the symbiotic host organism is gravid, + and if yes date due or date post-conception, specifying which is used + title: host of the symbiotic host gravidity + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - symbiosis + string_serialization: '{boolean};{timestamp}' + slot_uri: MIXS:0001333 + host_of_host_infname: + name: host_of_host_infname + description: Taxonomic name information of the host of the symbiotic host organism + below subspecies level + title: host of the symbiotic host infra-specific name + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001329 + range: string + host_of_host_infrank: + name: host_of_host_infrank + description: Taxonomic rank information about the host of the symbiotic host organism + below subspecies level, such as variety, form, rank etc + title: host of the symbiotic host infra-specific rank + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - rank + - symbiosis + slot_uri: MIXS:0001330 + range: string + host_of_host_name: + name: host_of_host_name + description: Common name of the host of the symbiotic host organism + title: host of the symbiotic host common name + examples: + - value: snail + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001324 + range: string + host_of_host_pheno: + name: host_of_host_pheno + annotations: + Expected_value: + tag: Expected_value + value: phenotype of the host of the symbiotic organism; PATO + description: Phenotype of the host of the symbiotic host organism. For phenotypic + quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato + title: host of the symbiotic host phenotype + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - symbiosis + string_serialization: '{term}' + slot_uri: MIXS:0001332 + host_of_host_sub_id: + name: host_of_host_sub_id + description: 'A unique identifier by which each host of the symbiotic host organism + subject can be referred to, de-identified, e.g. #H14' + title: host of the symbiotic host subject id + examples: + - value: H3 + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - identifier + - symbiosis + slot_uri: MIXS:0001327 + range: string + host_of_host_taxid: + name: host_of_host_taxid + annotations: + Expected_value: + tag: Expected_value + value: NCBI taxon identifier of the host of the symbiotic taxon organism + description: NCBI taxon id of the host of the symbiotic host organism + title: host of the symbiotic host taxon id + examples: + - value: '145637' + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - identifier + - symbiosis + - taxon + string_serialization: '{integer}' + slot_uri: MIXS:0001306 + host_of_host_totmass: + name: host_of_host_totmass + description: Total mass of the host of the symbiotic host organism at collection, + the unit depends on the host + title: host of the symbiotic host total mass + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - mass + - symbiosis + - total + slot_uri: MIXS:0001334 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_phenotype: + name: host_phenotype + annotations: + Expected_value: + tag: Expected_value + value: PATO or HP + description: Phenotype of human or other host. Use terms from the phenotypic quality + ontology (pato) or the Human Phenotype Ontology (HP) + title: host phenotype + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000874 + host_pred_appr: + name: host_pred_appr + description: Tool or approach used for host prediction + title: host prediction approach + examples: + - value: CRISPR spacer match + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - predict + slot_uri: MIXS:0000088 + range: HostPredApprEnum + host_pred_est_acc: + name: host_pred_est_acc + description: For each tool or approach used for host prediction, estimated false + discovery rates should be included, either computed de novo or from the literature + title: host prediction estimated accuracy + examples: + - value: 'CRISPR spacer match: 0 or 1 mismatches, estimated 8% FDR at the host + genus rank (Edwards et al. 2016 doi:10.1093/femsre/fuv048)' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - predict + slot_uri: MIXS:0000089 + range: string + host_pulse: + name: host_pulse + annotations: + Preferred_unit: + tag: Preferred_unit + value: beats per minute + description: Resting pulse, measured as beats per minute + title: host pulse + examples: + - value: 65 beats per minute + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000333 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_sex: + name: host_sex + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Gender or physical sex of the host + title: host sex + comments: + - example of non-binary from Excel sheets does not match any of the enumerated + values + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + string_serialization: '[female|hermaphrodite|non-binary|male|transgender|transgender + (female to male)|transgender (male to female) + + |undeclared]' + slot_uri: MIXS:0000811 + host_shape: + name: host_shape + description: Morphological shape of host + title: host shape + examples: + - value: round + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000261 + range: string + host_spec_range: + name: host_spec_range + annotations: + Expected_value: + tag: Expected_value + value: NCBI taxid + description: The range and diversity of host species that an organism is capable + of infecting, defined by NCBI taxonomy identifier + title: host specificity or range + examples: + - value: '9606' + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - range + string_serialization: '{integer}' + slot_uri: MIXS:0000030 + multivalued: true + host_specificity: + name: host_specificity + description: 'Level of specificity of symbiont-host interaction: e.g. generalist + (symbiont able to establish associations with distantly related hosts) or species-specific' + title: host specificity + examples: + - value: species-specific + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0001308 + range: HostSpecificityEnum + recommended: true + host_subject_id: + name: host_subject_id + description: A unique identifier by which each subject can be referred to, de-identified + title: host subject id + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - identifier + slot_uri: MIXS:0000861 + range: string + host_subspecf_genlin: + name: host_subspecf_genlin + annotations: + Expected_value: + tag: Expected_value + value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, + e.g. serovar, biotype, ecotype, variety, cultivar + description: Information about the genetic distinctness of the host organism below + the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, + or any relevant genetic typing schemes like Group I plasmid. Subspecies should + not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage + name and the lineage rank separated by a colon, e.g., biovar:abc123 + title: host subspecific genetic lineage + examples: + - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - lineage + string_serialization: '{rank name}:{text}' + slot_uri: MIXS:0001318 + multivalued: true + host_substrate: + name: host_substrate + description: The growth substrate of the host + title: host substrate + examples: + - value: rock + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000252 + range: string + host_symbiont: + name: host_symbiont + annotations: + Expected_value: + tag: Expected_value + value: species name or common name + description: The taxonomic name of the organism(s) found living in mutualistic, + commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont + can have its own symbionts. For example, parasites may have hyperparasites (=parasites + of the parasite) + title: observed host symbionts + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - observed + - symbiosis + slot_uri: MIXS:0001298 + range: string + multivalued: true + host_taxid: + name: host_taxid + annotations: + Expected_value: + tag: Expected_value + value: NCBI taxon identifier + description: NCBI taxon id of the host, e.g. 9606 + title: host taxid + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - taxon + slot_uri: MIXS:0000250 + host_tot_mass: + name: host_tot_mass + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Total mass of the host at collection, the unit depends on host + title: host total mass + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - mass + - total + slot_uri: MIXS:0000263 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_wet_mass: + name: host_wet_mass + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Measurement of wet mass + title: host wet mass + examples: + - value: 1500 gram + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - mass + - wet + slot_uri: MIXS:0000567 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + hrt: + name: hrt + description: Whether subject had hormone replacement theraphy, and if yes start + date + title: HRT + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000969 + range: datetime + humidity: + name: humidity + description: Amount of water vapour in the air, at the time of sampling + title: humidity + from_schema: https://w3id.org/mixs + keywords: + - humidity + slot_uri: MIXS:0000100 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + humidity_regm: + name: humidity_regm + annotations: + Expected_value: + tag: Expected_value + value: humidity value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram per cubic meter + description: Information about treatment involving an exposure to varying degree + of humidity; information about treatment involving use of growth hormones; should + include amount of humidity administered, treatment regimen including how many + times the treatment was repeated, how long each treatment lasted, and the start + and end time of the entire treatment; can include multiple regimens + title: humidity regimen + examples: + - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - humidity + - regimen + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000568 + multivalued: true + hygienic_area: + name: hygienic_area + annotations: + Expected_value: + tag: Expected_value + value: Expected value + description: The subdivision of areas within a food production facility according + to hygienic requirements. This field accepts terms listed under hygienic food + production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that + most accurately indicates the hygienic area your sample was taken from according + to the definitions provided + title: hygienic food production area + examples: + - value: Low Hygiene Area + from_schema: https://w3id.org/mixs + keywords: + - area + - food + - production + slot_uri: MIXS:0001253 + range: string + hysterectomy: + name: hysterectomy + description: Specification of whether hysterectomy was performed + title: hysterectomy + examples: + - value: 'no' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000287 + range: boolean + ihmc_medication_code: + name: ihmc_medication_code + description: Can include multiple medication codes + title: IHMC medication code + examples: + - value: '810' + from_schema: https://w3id.org/mixs + keywords: + - code + slot_uri: MIXS:0000884 + range: integer + multivalued: true + indoor_space: + name: indoor_space + description: A distinguishable space within a structure, the purpose for which + discrete areas of a building is used + title: indoor space + examples: + - value: foyer + from_schema: https://w3id.org/mixs + keywords: + - indoor + slot_uri: MIXS:0000763 + range: IndoorSpaceEnum + required: true + indoor_surf: + name: indoor_surf + description: Type of indoor surface + title: indoor surface + examples: + - value: wall + from_schema: https://w3id.org/mixs + keywords: + - indoor + - surface + slot_uri: MIXS:0000764 + range: IndoorSurfEnum + indust_eff_percent: + name: indust_eff_percent + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Percentage of industrial effluents received by wastewater treatment + plant + title: industrial effluent percent + from_schema: https://w3id.org/mixs + keywords: + - percent + slot_uri: MIXS:0000662 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + inorg_particles: + name: inorg_particles + annotations: + Expected_value: + tag: Expected_value + value: inorganic particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: mole per liter, milligram per liter + description: Concentration of particles such as sand, grit, metal particles, ceramics, + etc.; can include multiple particles + title: inorganic particles + from_schema: https://w3id.org/mixs + keywords: + - inorganic + - particle + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000664 + multivalued: true + inside_lux: + name: inside_lux + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilowatt per square metre + description: The recorded value at sampling time (power density) + title: inside lux light + from_schema: https://w3id.org/mixs + keywords: + - inside + - light + slot_uri: MIXS:0000168 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + int_wall_cond: + name: int_wall_cond + description: The physical condition of the wall at the time of sampling; photos + or video preferred; use drawings to indicate location of damaged areas + title: interior wall condition + examples: + - value: damaged + from_schema: https://w3id.org/mixs + keywords: + - condition + - interior + - wall + slot_uri: MIXS:0000813 + range: DamagedEnum + intended_consumer: + name: intended_consumer + annotations: + Expected_value: + tag: Expected_value + value: FOODON_03510136 or NCBI taxid + description: Food consumer type, human or animal, for which the food product is + produced and marketed. This field accepts terms listed under food consumer group + (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid + title: intended consumer + examples: + - value: 9606 o rsenior as food consumer [FOODON:03510254] + from_schema: https://w3id.org/mixs + keywords: + - consumer + string_serialization: '{integer}|{termLabel} [{termID}]' + slot_uri: MIXS:0001144 + multivalued: true + isol_growth_condt: + name: isol_growth_condt + description: Publication reference in the form of pubmed ID (pmid), digital object + identifier (doi) or url for isolation and growth condition specifications of + the organism/material + title: isolation and growth condition + examples: + - value: doi:10.1016/j.syapm.2018.01.009 + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - condition + - growth + - isolation + slot_uri: MIXS:0000003 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + iw_bt_date_well: + name: iw_bt_date_well + description: Injection water breakthrough date per well following a secondary + and/or tertiary recovery + title: injection water breakthrough date of specific well + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + keywords: + - date + - water + slot_uri: MIXS:0001010 + range: datetime + iwf: + name: iwf + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: Proportion of the produced fluids derived from injected water at + the time of sampling. (e.g. 87%) + title: injection water fraction + comments: + - pattern was "[0-9]*\\.?[0-9]+ ?%" + - percent or float? + examples: + - value: '0.79' + from_schema: https://w3id.org/mixs + keywords: + - fraction + - water + slot_uri: MIXS:0000455 + range: float + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + kidney_disord: + name: kidney_disord + description: History of kidney disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + kidney disease (https://disease-ontology.org/?id=DOID:557) + title: urine/kidney disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000277 + range: string + multivalued: true + last_clean: + name: last_clean + description: The last time the floor was cleaned (swept, mopped, vacuumed) + title: last time swept/mopped/vacuumed + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + keywords: + - time + slot_uri: MIXS:0000814 + range: datetime + lat_lon: + name: lat_lon + description: The geographical origin of the sample as defined by latitude and + longitude. The values should be reported in decimal degrees, limited to 8 decimal + points, and in WGS84 system + title: geographic location (latitude and longitude) + examples: + - value: 50.586825 6.408977 + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - geographic + - location + slot_uri: MIXS:0000009 + required: true + pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$ + structured_pattern: + syntax: ^{lat} {lon}$ + interpolated: true + partial_match: true + lib_layout: + name: lib_layout + description: Specify whether to expect single, paired, or other configuration + of reads + title: library layout + examples: + - value: paired + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - library + slot_uri: MIXS:0000041 + range: LibLayoutEnum + lib_reads_seqd: + name: lib_reads_seqd + description: Total number of clones sequenced from the library + title: library reads sequenced + examples: + - value: '20' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - library + slot_uri: MIXS:0000040 + range: integer + lib_screen: + name: lib_screen + annotations: + Expected_value: + tag: Expected_value + value: screening strategy name + description: Specific enrichment or screening methods applied before and/or after + creating libraries + title: library screening strategy + examples: + - value: enriched, screened, normalized + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - library + slot_uri: MIXS:0000043 + range: string + lib_size: + name: lib_size + description: Total number of clones in the library prepared for the project + title: library size + examples: + - value: '50' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - library + - size + slot_uri: MIXS:0000039 + range: integer + lib_vector: + name: lib_vector + annotations: + Expected_value: + tag: Expected_value + value: vector + description: Cloning vector type(s) used in construction of libraries + title: library vector + examples: + - value: Bacteriophage P1 + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - library + slot_uri: MIXS:0000042 + range: string + library_prep_kit: + name: library_prep_kit + annotations: + Expected_value: + tag: Expected_value + value: name of library preparation kit + description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.), + tailored for specific sequencing workflows, which allow the simplified preparation + of sequencing-ready libraries for small genomes, amplicons, and plasmids + title: library preparation kit + from_schema: https://w3id.org/mixs + keywords: + - kit + - library + - preparation + slot_uri: MIXS:0001145 + range: string + light_intensity: + name: light_intensity + annotations: + Preferred_unit: + tag: Preferred_unit + value: lux + description: Measurement of light intensity + title: light intensity + examples: + - value: 0.3 lux + from_schema: https://w3id.org/mixs + keywords: + - intensity + - light + slot_uri: MIXS:0000706 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + light_regm: + name: light_regm + annotations: + Expected_value: + tag: Expected_value + value: exposure type;light intensity;light quality + Preferred_unit: + tag: Preferred_unit + value: lux; micrometer, nanometer, angstrom + description: Information about treatment(s) involving exposure to light, including + both light intensity and quality + title: light regimen + examples: + - value: incandescant light;10 lux;450 nanometer + from_schema: https://w3id.org/mixs + keywords: + - light + - regimen + string_serialization: '{text};{float} {unit};{float} {unit}' + slot_uri: MIXS:0000569 + light_type: + name: light_type + description: Application of light to achieve some practical or aesthetic effect. + Lighting includes the use of both artificial light sources such as lamps and + light fixtures, as well as natural illumination by capturing daylight. Can also + include absence of light + title: light type + examples: + - value: desk lamp + from_schema: https://w3id.org/mixs + keywords: + - light + - type + slot_uri: MIXS:0000769 + range: LightTypeEnum + required: true + multivalued: true + link_addit_analys: + name: link_addit_analys + description: Link to additional analysis results performed on the sample + title: links to additional analysis + from_schema: https://w3id.org/mixs + keywords: + - link + slot_uri: MIXS:0000340 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + link_class_info: + name: link_class_info + annotations: + Expected_value: + tag: Expected_value + value: PMID,DOI or url + description: Link to digitized soil maps or other soil classification information + title: link to classification information + from_schema: https://w3id.org/mixs + keywords: + - classification + - information + - link + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000329 + link_climate_info: + name: link_climate_info + description: Link to climate resource + title: link to climate information + from_schema: https://w3id.org/mixs + keywords: + - information + - link + slot_uri: MIXS:0000328 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + lithology: + name: lithology + description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). + If "other" is specified, please propose entry in "additional info" field' + title: lithology + examples: + - value: Volcanic + from_schema: https://w3id.org/mixs + keywords: + - lithology + slot_uri: MIXS:0000990 + range: LithologyEnum + recommended: true + liver_disord: + name: liver_disord + description: History of liver disorders; can include multiple disorders. The terms + should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + liver disease (https://disease-ontology.org/?id=DOID:409) + title: liver disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000282 + range: string + multivalued: true + local_class: + name: local_class + annotations: + Expected_value: + tag: Expected_value + value: local classification name + description: Soil classification based on local soil classification system + title: soil_taxonomic/local classification + from_schema: https://w3id.org/mixs + keywords: + - classification + slot_uri: MIXS:0000330 + range: string + local_class_meth: + name: local_class_meth + description: Reference or method used in determining the local soil classification + title: soil_taxonomic/local classification method + from_schema: https://w3id.org/mixs + keywords: + - classification + - method + slot_uri: MIXS:0000331 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + lot_number: + name: lot_number + annotations: + Expected_value: + tag: Expected_value + value: lot number, item + description: 'A distinctive alpha-numeric identification code assigned by the + manufacturer or distributor to a specific quantity of manufactured material + or product within a batch. Synonym: Batch Number. The submitter should provide + lot number of the item followed by the item name for which the lot number was + provided' + title: lot number + examples: + - value: 1239ABC01A, split Cornish hens + from_schema: https://w3id.org/mixs + keywords: + - number + string_serialization: '{integer}, {text}' + slot_uri: MIXS:0001147 + multivalued: true + mag_cov_software: + name: mag_cov_software + description: Tool(s) used to determine the genome coverage if coverage is used + as a binning parameter in the extraction of genomes from metagenomic datasets + title: MAG coverage software + examples: + - value: bbmap + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + slot_uri: MIXS:0000080 + range: MagCovSoftwareEnum + magnesium: + name: magnesium + annotations: + Preferred_unit: + tag: Preferred_unit + value: mole per liter, milligram per liter, parts per million, micromole per + kilogram + description: Concentration of magnesium in the sample + title: magnesium + examples: + - value: 52.8 micromole per kilogram + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000431 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + maternal_health_stat: + name: maternal_health_stat + description: Specification of the maternal health status + title: amniotic fluid/maternal health status + from_schema: https://w3id.org/mixs + keywords: + - status + slot_uri: MIXS:0000273 + range: string + max_occup: + name: max_occup + description: The maximum amount of people allowed in the indoor environment + title: maximum occupancy + from_schema: https://w3id.org/mixs + keywords: + - maximum + slot_uri: MIXS:0000229 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + mean_frict_vel: + name: mean_frict_vel + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter per second + description: Measurement of mean friction velocity + title: mean friction velocity + examples: + - value: 0.5 meter per second + from_schema: https://w3id.org/mixs + keywords: + - mean + - velocity + slot_uri: MIXS:0000498 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + mean_peak_frict_vel: + name: mean_peak_frict_vel + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter per second + description: Measurement of mean peak friction velocity + title: mean peak friction velocity + examples: + - value: 1 meter per second + from_schema: https://w3id.org/mixs + keywords: + - mean + - peak + - velocity + slot_uri: MIXS:0000502 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + mech_struc: + name: mech_struc + description: 'mechanical structure: a moving structure' + title: mechanical structure + examples: + - value: elevator + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000815 + range: MechStrucEnum + mechanical_damage: + name: mechanical_damage + annotations: + Expected_value: + tag: Expected_value + value: damage type;body site + description: Information about any mechanical damage exerted on the plant; can + include multiple damages and sites + title: mechanical damage + examples: + - value: pruning;bark + from_schema: https://w3id.org/mixs + string_serialization: '{text};{text}' + slot_uri: MIXS:0001052 + multivalued: true + medic_hist_perform: + name: medic_hist_perform + description: Whether full medical history was collected + title: medical history performed + examples: + - value: '1' + from_schema: https://w3id.org/mixs + keywords: + - history + slot_uri: MIXS:0000897 + range: boolean + menarche: + name: menarche + description: Date of most recent menstruation + title: menarche + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000965 + range: datetime + menopause: + name: menopause + description: Date of onset of menopause + title: menopause + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000968 + range: datetime + methane: + name: methane + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per billion, parts per million + description: Methane (gas) amount or concentration at the time of sampling + title: methane + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000101 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + micro_biomass_meth: + name: micro_biomass_meth + description: Reference or method used in determining microbial biomass + title: microbial biomass method + comments: + - slot name/scn was microbial_biomass_meth + examples: + - value: http://dx.doi.org/10.1016/j.soilbio.2005.01.021 + from_schema: https://w3id.org/mixs + keywords: + - biomass + - method + - microbial + slot_uri: MIXS:0000339 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + microb_cult_med: + name: microb_cult_med + description: A culture medium used to select for, grow, and maintain prokaryotic + microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar) + forms. This field accepts terms listed under microbiological culture medium + (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is + not listed please use text to describe the culture medium + title: microbiological culture medium + examples: + - value: brain heart infusion agar [MICRO:0000566] + from_schema: https://w3id.org/mixs + keywords: + - culture + - microbiological + slot_uri: MIXS:0001216 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + microb_start: + name: microb_start + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03544453 + description: Any type of microorganisms used in food production. This field accepts + terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453) + title: microbial starter + examples: + - value: starter cultures [FOODON:03544454] + from_schema: https://w3id.org/mixs + keywords: + - microbial + string_serialization: '{term label} [{termID}]|{text}' + slot_uri: MIXS:0001217 + microb_start_count: + name: microb_start_count + annotations: + Expected_value: + tag: Expected_value + value: organism name; measurement value; enumeration + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight + description: 'Total cell count of starter culture per gram, volume or area of + sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn, + etc.) should also be provided. (example : total prokaryotes; 3.5e7 cells per + ml; qPCR)' + title: microbial starter organism count + examples: + - value: total prokaryotes;3.5e9 colony forming units per milliliter;spread plate + from_schema: https://w3id.org/mixs + keywords: + - count + - microbial + - organism + string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|spread plate|other]' + slot_uri: MIXS:0001218 + microb_start_inoc: + name: microb_start_inoc + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram or gram + description: The amount of starter culture used to inoculate a new batch + title: microbial starter inoculation + examples: + - value: 100 milligrams + from_schema: https://w3id.org/mixs + keywords: + - microbial + slot_uri: MIXS:0001219 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + microb_start_prep: + name: microb_start_prep + description: Information about the protocol or method used to prepare the starter + inoculum + title: microbial starter preparation + examples: + - value: liquid starter culture, propagated 3 cycles in milk prior to inoculation + from_schema: https://w3id.org/mixs + keywords: + - microbial + - preparation + slot_uri: MIXS:0001220 + range: string + microb_start_source: + name: microb_start_source + description: The source from which the microbial starter culture was sourced. If + commercially supplied, list supplier + title: microbial starter source + examples: + - value: backslopped, GetCulture + from_schema: https://w3id.org/mixs + keywords: + - microbial + - source + slot_uri: MIXS:0001221 + range: string + microb_start_taxID: + name: microb_start_taxID + description: Please include Genus species and strain ID, if known of microorganisms + used in food production. For complex communities, pipes can be used to separate + two or more microbes + title: microbial starter NCBI taxonomy ID + examples: + - value: Lactobacillus rhamnosus [NCIT:C123495] + from_schema: https://w3id.org/mixs + keywords: + - identifier + - microbial + - ncbi + - taxon + slot_uri: MIXS:0001222 + range: string + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + microbial_biomass: + name: microbial_biomass + annotations: + Preferred_unit: + tag: Preferred_unit + value: ton, kilogram, gram per kilogram soil + description: The part of the organic matter in the soil that constitutes living + microorganisms smaller than 5-10 micrometer. If you keep this, you would need + to have correction factors used for conversion to the final units + title: microbial biomass + from_schema: https://w3id.org/mixs + keywords: + - biomass + - microbial + slot_uri: MIXS:0000650 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + mid: + name: mid + description: Molecular barcodes, called Multiplex Identifiers (MIDs), that are + used to specifically tag unique samples in a sequencing run. Sequence should + be reported in uppercase letters + title: multiplex identifiers + examples: + - value: GTGAATAT + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - identifier + slot_uri: MIXS:0000047 + range: string + pattern: ^[ACGTRKSYMWBHDVN]+$ + structured_pattern: + syntax: ^{ambiguous_nucleotides}$ + interpolated: true + partial_match: true + mineral_nutr_regm: + name: mineral_nutr_regm + annotations: + Expected_value: + tag: Expected_value + value: mineral nutrient name;mineral nutrient amount;treatment interval and + duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving the use of mineral supplements; + should include the name of mineral nutrient, amount administered, treatment + regimen including how many times the treatment was repeated, how long each treatment + lasted, and the start and end time of the entire treatment; can include multiple + mineral nutrient regimens + title: mineral nutrient regimen + examples: + - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - mineral + - nutrient + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000570 + multivalued: true + misc_param: + name: misc_param + annotations: + Expected_value: + tag: Expected_value + value: parameter name;measurement value + description: Any other measurement performed or parameter collected, that is not + listed here + title: miscellaneous parameter + examples: + - value: Bicarbonate ion concentration;2075 micromole per kilogram + from_schema: https://w3id.org/mixs + keywords: + - parameter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000752 + multivalued: true + mode_transmission: + name: mode_transmission + description: The process through which the symbiotic host organism entered the + host from which it was sampled + title: mode of transmission + examples: + - value: horizontal:castrator + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001312 + range: ModeTransmissionEnum + recommended: true + n_alkanes: + name: n_alkanes + annotations: + Expected_value: + tag: Expected_value + value: n-alkane name;measurement value + description: Concentration of n-alkanes; can include multiple n-alkanes + title: n-alkanes + examples: + - value: n-hexadecane;100 milligram per liter + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000503 + multivalued: true + neg_cont_type: + name: neg_cont_type + annotations: + Expected_value: + tag: Expected_value + value: enumeration or text + description: The substance or equipment used as a negative control in an investigation + title: negative control type + in_subset: + - investigation + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0001321 + range: NegContTypeEnum + recommended: true + nitrate: + name: nitrate + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of nitrate in the sample + title: nitrate + examples: + - value: 65 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - nitrate + slot_uri: MIXS:0000425 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + nitrite: + name: nitrite + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of nitrite in the sample + title: nitrite + examples: + - value: 0.5 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - nitrite + slot_uri: MIXS:0000426 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + nitro: + name: nitro + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of nitrogen (total) + title: nitrogen + examples: + - value: 4.2 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - nitrogen + slot_uri: MIXS:0000504 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + non_min_nutr_regm: + name: non_min_nutr_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving the exposure of plant to non-mineral + nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral + nutrient, amount administered, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple non-mineral nutrient regimens + title: non-mineral nutrient regimen + examples: + - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ + from_schema: https://w3id.org/mixs + keywords: + - non-mineral + - nutrient + - regimen + slot_uri: MIXS:0000571 + range: string + multivalued: true + nose_mouth_teeth_throat_disord: + name: nose_mouth_teeth_throat_disord + description: History of nose/mouth/teeth/throat disorders; can include multiple + disorders. The terms should be chosen from the DO (Human Disease Ontology) at + http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825), + mouth disease (https://disease-ontology.org/?id=DOID:403), tooth disease (https://disease-ontology.org/?id=DOID:1091), + or upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974) + title: nose/mouth/teeth/throat disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000283 + range: string + multivalued: true + nose_throat_disord: + name: nose_throat_disord + description: History of nose-throat disorders; can include multiple disorders, The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + lung disease (https://disease-ontology.org/?id=DOID:850), upper respiratory + tract disease (https://disease-ontology.org/?id=DOID:974) + title: nose throat disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000270 + range: string + multivalued: true + nucl_acid_amp: + name: nucl_acid_amp + description: A link to a literature reference, electronic resource or a standard + operating procedure (SOP), that describes the enzymatic amplification (PCR, + TMA, NASBA) of specific nucleic acids + title: nucleic acid amplification + examples: + - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000038 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + nucl_acid_ext: + name: nucl_acid_ext + description: A link to a literature reference, electronic resource or a standard + operating procedure (SOP), that describes the material separation to recover + the nucleic acid fraction from a sample + title: nucleic acid extraction + examples: + - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000037 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + nucl_acid_ext_kit: + name: nucl_acid_ext_kit + annotations: + Expected_value: + tag: Expected_value + value: The name of an extraction kit + description: The name of the extraction kit used to recover the nucleic acid fraction + of an input material is performed + title: nucleic acid extraction kit + examples: + - value: Qiagen PowerSoil Kit + from_schema: https://w3id.org/mixs + keywords: + - kit + slot_uri: MIXS:0001223 + range: string + multivalued: true + num_replicons: + name: num_replicons + annotations: + Expected_value: + tag: Expected_value + value: 'for eukaryotes and bacteria: chromosomes (haploid count); for viruses: + segments' + description: Reports the number of replicons in a nuclear genome of eukaryotes, + in the genome of a bacterium or archaea or the number of segments in a segmented + virus. Always applied to the haploid chromosome count of a eukaryote + title: number of replicons + examples: + - value: '2' + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - number + string_serialization: '{integer}' + slot_uri: MIXS:0000022 + range: integer + num_samp_collect: + name: num_samp_collect + description: The number of samples collected during the current sampling event + title: number of samples collected + examples: + - value: 116 samples + from_schema: https://w3id.org/mixs + keywords: + - number + - sample + slot_uri: MIXS:0001224 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + number_contig: + name: number_contig + description: Total number of contigs in the cleaned/submitted assembly that makes + up a given genome, SAG, MAG, or UViG + title: number of contigs + examples: + - value: '40' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - number + slot_uri: MIXS:0000060 + range: integer + number_pets: + name: number_pets + description: The number of pets residing in the sampled space + title: number of pets + from_schema: https://w3id.org/mixs + keywords: + - number + slot_uri: MIXS:0000231 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + number_plants: + name: number_plants + description: The number of plant(s) in the sampling space + title: number of houseplants + from_schema: https://w3id.org/mixs + keywords: + - number + slot_uri: MIXS:0000230 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + number_resident: + name: number_resident + description: The number of individuals currently occupying in the sampling location + title: number of residents + from_schema: https://w3id.org/mixs + keywords: + - number + slot_uri: MIXS:0000232 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + occup_density_samp: + name: occup_density_samp + description: Average number of occupants at time of sampling per square footage + title: occupant density at sampling + examples: + - value: '0.1' + from_schema: https://w3id.org/mixs + keywords: + - density + slot_uri: MIXS:0000217 + range: float + required: true + occup_document: + name: occup_document + description: The type of documentation of occupancy + title: occupancy documentation + examples: + - value: estimate + from_schema: https://w3id.org/mixs + keywords: + - documentation + slot_uri: MIXS:0000816 + range: OccupDocumentEnum + occup_samp: + name: occup_samp + description: Number of occupants present at time of sample within the given space + title: occupancy at sampling + examples: + - value: '10' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000772 + range: float + required: true + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + org_carb: + name: org_carb + description: Concentration of organic carbon + title: organic carbon + examples: + - value: 1.5 microgram per liter + from_schema: https://w3id.org/mixs + keywords: + - carbon + - organic + slot_uri: MIXS:0000508 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + org_count_qpcr_info: + name: org_count_qpcr_info + annotations: + Expected_value: + tag: Expected_value + value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial + denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes; total cycles + Preferred_unit: + tag: Preferred_unit + value: number of cells per gram (or ml or cm^2) + description: 'If qpcr was used for the cell count, the target gene name, the primer + sequence and the cycling conditions should also be provided. (Example: 16S rrna; + FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; + annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; + 30 cycles)' + title: organism count qPCR information + from_schema: https://w3id.org/mixs + keywords: + - count + - information + - organism + string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes; total cycles' + slot_uri: MIXS:0000099 + org_matter: + name: org_matter + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter + description: Concentration of organic matter + title: organic matter + examples: + - value: 1.75 milligram per cubic meter + from_schema: https://w3id.org/mixs + keywords: + - organic + slot_uri: MIXS:0000204 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + org_nitro: + name: org_nitro + description: Concentration of organic nitrogen + title: organic nitrogen + examples: + - value: 4 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - nitrogen + - organic + slot_uri: MIXS:0000205 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + org_particles: + name: org_particles + annotations: + Expected_value: + tag: Expected_value + value: particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram per liter + description: Concentration of particles such as faeces, hairs, food, vomit, paper + fibers, plant material, humus, etc + title: organic particles + from_schema: https://w3id.org/mixs + keywords: + - organic + - particle + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000665 + multivalued: true + organism_count: + name: organism_count + annotations: + Expected_value: + tag: Expected_value + value: organism name;measurement value;enumeration + description: 'Total cell count of any organism (or group of organisms) per gram, + volume or area of sample, should include name of organism followed by count. + The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should + also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)' + title: organism count + from_schema: https://w3id.org/mixs + keywords: + - count + - organism + string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]' + slot_uri: MIXS:0000103 + multivalued: true + otu_class_appr: + name: otu_class_appr + annotations: + Expected_value: + tag: Expected_value + value: cutoffs and method used + description: Cutoffs and approach used when clustering species-level OTUs. Note + that results from standard 95% ANI / 85% AF clustering should be provided alongside + OTUS defined from another set of thresholds, even if the latter are the ones + primarily used during the analysis + title: OTU classification approach + examples: + - value: 95% ANI;85% AF; greedy incremental clustering + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - classification + - otu + string_serialization: '{ANI cutoff};{AF cutoff};{clustering method}' + slot_uri: MIXS:0000085 + otu_db: + name: otu_db + annotations: + Expected_value: + tag: Expected_value + value: database and version + description: Reference database (i.e. sequences not generated as part of the current + study) used to cluster new genomes in "species-level" OTUs, if any + title: OTU database + examples: + - value: NCBI Viral RefSeq;83 + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - database + - otu + string_serialization: '{database};{version}' + slot_uri: MIXS:0000087 + otu_seq_comp_appr: + name: otu_seq_comp_appr + annotations: + Expected_value: + tag: Expected_value + value: software name, version and relevant parameters + description: Tool and thresholds used to compare sequences when computing "species-level" + OTUs + title: OTU sequence comparison approach + examples: + - value: 'blastn;2.6.0+;e-value cutoff: 0.001' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - otu + string_serialization: '{software};{version};{parameters}' + slot_uri: MIXS:0000086 + owc_tvdss: + name: owc_tvdss + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS) + title: oil water contact depth + from_schema: https://w3id.org/mixs + keywords: + - depth + - oil + - water + slot_uri: MIXS:0000405 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + oxy_stat_samp: + name: oxy_stat_samp + description: Oxygenation status of sample + title: oxygenation status of sample + examples: + - value: aerobic + from_schema: https://w3id.org/mixs + keywords: + - oxygen + - sample + - status + slot_uri: MIXS:0000753 + range: OxyStatSampEnum + oxygen: + name: oxygen + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Oxygen (gas) amount or concentration at the time of sampling + title: oxygen + examples: + - value: 600 parts per million + from_schema: https://w3id.org/mixs + keywords: + - oxygen + slot_uri: MIXS:0000104 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + part_org_carb: + name: part_org_carb + description: Concentration of particulate organic carbon + title: particulate organic carbon + examples: + - value: 1.92 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - carbon + - organic + - particle + - particulate + slot_uri: MIXS:0000515 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + part_org_nitro: + name: part_org_nitro + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Concentration of particulate organic nitrogen + title: particulate organic nitrogen + examples: + - value: 0.3 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - nitrogen + - organic + - particle + - particulate + slot_uri: MIXS:0000719 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + part_plant_animal: + name: part_plant_animal + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03420116 + description: The anatomical part of the organism being involved in food production + or consumption; e.g., a carrot is the root of the plant (root vegetable). This + field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116) + title: part of plant or animal + examples: + - value: chuck [FOODON:03530021] + from_schema: https://w3id.org/mixs + keywords: + - animal + - plant + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001149 + multivalued: true + particle_class: + name: particle_class + annotations: + Expected_value: + tag: Expected_value + value: particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Particles are classified, based on their size, into six general categories:clay, + silt, sand, gravel, cobbles, and boulders; should include amount of particle + preceded by the name of the particle type; can include multiple values + title: particle classification + from_schema: https://w3id.org/mixs + keywords: + - classification + - particle + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000206 + multivalued: true + pathogenicity: + name: pathogenicity + annotations: + Expected_value: + tag: Expected_value + value: names of organisms that the entity is pathogenic to + description: To what is the entity pathogenic + title: known pathogenicity + examples: + - value: human, animal, plant, fungi, bacteria + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000027 + range: string + pcr_cond: + name: pcr_cond + annotations: + Expected_value: + tag: Expected_value + value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes;total cycles + description: Description of reaction conditions and components of polymerase chain + reaction performed during library preparation. + title: pcr conditions + examples: + - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 + - value: initial denaturation:94degC_1.5min + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - condition + - pcr + string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes;total cycles + slot_uri: MIXS:0000049 + pcr_primers: + name: pcr_primers + annotations: + Expected_value: + tag: Expected_value + value: 'FWD: forward primer sequence;REV:reverse primer sequence' + description: PCR primers that were used to amplify the sequence of the targeted + gene, locus or subfragment. This field should contain all the primers used for + a single PCR reaction if multiple forward or reverse primers are present in + a single PCR reaction. The primer sequence should be reported in uppercase letters + title: pcr primers + examples: + - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - pcr + string_serialization: FWD:{dna};REV:{dna} + slot_uri: MIXS:0000046 + permeability: + name: permeability + annotations: + Expected_value: + tag: Expected_value + value: measurement value range + Preferred_unit: + tag: Preferred_unit + value: mD + description: 'Measure of the ability of a hydrocarbon resource to allow fluids + to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))' + title: permeability + from_schema: https://w3id.org/mixs + string_serialization: '{integer} - {integer} {unit}' + slot_uri: MIXS:0000404 + perturbation: + name: perturbation + annotations: + Expected_value: + tag: Expected_value + value: perturbation type name;perturbation interval and duration + description: Type of perturbation, e.g. chemical administration, physical disturbance, + etc., coupled with perturbation regimen including how many times the perturbation + was repeated, how long each perturbation lasted, and the start and end time + of the entire perturbation period; can include multiple perturbation types + title: perturbation + examples: + - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - perturbation + string_serialization: '{text};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000754 + multivalued: true + pesticide_regm: + name: pesticide_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of insecticides; should + include the name of pesticide, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, and + the start and end time of the entire treatment; can include multiple pesticide + regimens + title: pesticide regimen + examples: + - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + slot_uri: MIXS:0000573 + range: string + multivalued: true + pet_farm_animal: + name: pet_farm_animal + annotations: + Expected_value: + tag: Expected_value + value: presence status;type of animal or pet + description: Specification of presence of pets or farm animals in the environment + of subject, if yes the animals should be specified; can include multiple animals + present + title: presence of pets or farm animals + examples: + - value: yes; 5 cats + from_schema: https://w3id.org/mixs + keywords: + - animal + - farm + - presence + string_serialization: '{boolean};{text}' + slot_uri: MIXS:0000267 + multivalued: true + petroleum_hydrocarb: + name: petroleum_hydrocarb + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of petroleum hydrocarbon + title: petroleum hydrocarbon + examples: + - value: 0.05 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - hydrocarbon + - petroleum + slot_uri: MIXS:0000516 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ph: + name: ph + description: Ph measurement of the sample, or liquid portion of sample, or aqueous + phase of the fluid + title: pH + examples: + - value: '7.2' + from_schema: https://w3id.org/mixs + keywords: + - ph + slot_uri: MIXS:0001001 + range: float + ph_meth: + name: ph_meth + description: Reference or method used in determining pH + title: pH method + examples: + - value: https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf + from_schema: https://w3id.org/mixs + keywords: + - method + - ph + slot_uri: MIXS:0001106 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + ph_regm: + name: ph_regm + description: Information about treatment involving exposure of plants to varying + levels of ph of the growth media, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include multiple regimen + title: pH regimen + examples: + - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - ph + - regimen + slot_uri: MIXS:0001056 + range: string + multivalued: true + phaeopigments: + name: phaeopigments + annotations: + Expected_value: + tag: Expected_value + value: phaeopigment name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter + description: Concentration of phaeopigments; can include multiple phaeopigments + title: phaeopigments + examples: + - value: 2.5 milligram per cubic meter + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000180 + multivalued: true + phosphate: + name: phosphate + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of phosphate + title: phosphate + examples: + - value: 0.7 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - phosphate + slot_uri: MIXS:0000505 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + phosplipid_fatt_acid: + name: phosplipid_fatt_acid + annotations: + Expected_value: + tag: Expected_value + value: phospholipid fatty acid name;measurement value + description: Concentration of phospholipid fatty acids; can include multiple values + title: phospholipid fatty acid + examples: + - value: 2.98 milligram per liter + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000181 + multivalued: true + photon_flux: + name: photon_flux + annotations: + Preferred_unit: + tag: Preferred_unit + value: number of photons per second per unit area + description: Measurement of photon flux + title: photon flux + examples: + - value: 3.926 micromole photons per second per square meter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000725 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + photosynt_activ: + name: photosynt_activ + annotations: + Preferred_unit: + tag: Preferred_unit + value: mol m-2 s-1 + description: Measurement of photosythetic activity (i.e. leaf gas exchange / chlorophyll + fluorescence emissions / reflectance / transpiration) Please also include the + term method term detailing the method of activity measurement + title: photosynthetic activity + examples: + - value: 0.1 mol CO2 m-2 s-1 + description: added a magnitude to the example from the XLSX file, " mol CO2 + m-2 s-1" + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001296 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + photosynt_activ_meth: + name: photosynt_activ_meth + description: Reference or method used in measurement of photosythetic activity + title: photosynthetic activity method + from_schema: https://w3id.org/mixs + keywords: + - method + slot_uri: MIXS:0001336 + range: string + recommended: true + multivalued: true + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + plant_growth_med: + name: plant_growth_med + annotations: + Expected_value: + tag: Expected_value + value: EO or enumeration + description: Specification of the media for growing the plants or tissue cultured + samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in + vitro liquid culture medium. Recommended value is a specific value from EO:plant + growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) + or other controlled vocabulary + title: plant growth medium + from_schema: https://w3id.org/mixs + keywords: + - growth + - plant + string_serialization: '{termLabel} [{termID}] or [husk|other artificial liquid + medium|other artificial solid medium|peat moss|perlite|pumice|sand|soil|vermiculite|water]' + slot_uri: MIXS:0001057 + plant_part_maturity: + name: plant_part_maturity + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03530050 + description: A description of the stage of development of a plant or plant part + based on maturity or ripeness. This field accepts terms listed under degree + of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050) + title: degree of plant part maturity + examples: + - value: ripe or mature [FOODON:03530052] + from_schema: https://w3id.org/mixs + keywords: + - degree + - plant + string_serialization: '{term label}{term ID}' + slot_uri: MIXS:0001120 + plant_product: + name: plant_product + annotations: + Expected_value: + tag: Expected_value + value: product name + description: Substance produced by the plant, where the sample was obtained from + title: plant product + examples: + - value: xylem sap [PO:0025539] + from_schema: https://w3id.org/mixs + keywords: + - plant + - product + slot_uri: MIXS:0001058 + range: string + plant_reprod_crop: + name: plant_reprod_crop + description: Plant reproductive part used in the field during planting to start + the crop + title: plant reproductive part + examples: + - value: seedling + from_schema: https://w3id.org/mixs + keywords: + - plant + slot_uri: MIXS:0001150 + range: PlantReprodCropEnum + multivalued: true + plant_sex: + name: plant_sex + description: Sex of the reproductive parts on the whole plant, e.g. pistillate, + staminate, monoecieous, hermaphrodite + title: plant sex + examples: + - value: Hermaphroditic + from_schema: https://w3id.org/mixs + keywords: + - plant + slot_uri: MIXS:0001059 + range: PlantSexEnum + plant_struc: + name: plant_struc + description: Name of plant structure the sample was obtained from; for Plant Ontology + (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, + e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the + sex of it can be recorded here + title: plant structure + examples: + - value: epidermis [PO:0005679] + from_schema: https://w3id.org/mixs + keywords: + - plant + slot_uri: MIXS:0001060 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + plant_water_method: + name: plant_water_method + description: Description of the equipment or method used to distribute water to + crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). + Multiple terms can be separated by pipes + title: plant water delivery method + examples: + - value: drip irrigation process [AGRO:00000056] + from_schema: https://w3id.org/mixs + keywords: + - delivery + - method + - plant + - water + slot_uri: MIXS:0001111 + range: string + recommended: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + ploidy: + name: ploidy + description: The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, + triploid, tetraploid). It has implications for the downstream study of duplicated + gene and regions of the genomes (and perhaps for difficulties in assembly). + For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic + Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer + to http://purl.bioontology.org/ontology/PATO + title: ploidy + examples: + - value: allopolyploidy [PATO:0001379] + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000021 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + pollutants: + name: pollutants + annotations: + Expected_value: + tag: Expected_value + value: pollutant name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter, microgram per cubic meter + description: Pollutant types and, amount or concentrations measured at the time + of sampling; can report multiple pollutants by entering numeric values preceded + by name of pollutant + title: pollutants + examples: + - value: lead;0.15 microgram per cubic meter + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000107 + multivalued: true + pool_dna_extracts: + name: pool_dna_extracts + annotations: + Expected_value: + tag: Expected_value + value: pooling status;number of pooled extracts + Preferred_unit: + tag: Preferred_unit + value: gram, milliliter, microliter + description: Indicate whether multiple DNA extractions were mixed. If the answer + yes, the number of extracts that were pooled should be given + title: pooling of DNA extracts (if done) + examples: + - value: yes, 5 + from_schema: https://w3id.org/mixs + keywords: + - dna + - pooling + slot_uri: MIXS:0000325 + porosity: + name: porosity + annotations: + Expected_value: + tag: Expected_value + value: measurement value or range + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Porosity of deposited sediment is volume of voids divided by the + total volume of sample + title: porosity + from_schema: https://w3id.org/mixs + keywords: + - porosity + string_serialization: '{float} - {float} {unit}' + slot_uri: MIXS:0000211 + pos_cont_type: + name: pos_cont_type + description: The substance, mixture, product, or apparatus used to verify that + a process which is part of an investigation delivers a true positive + title: positive control type + in_subset: + - investigation + from_schema: https://w3id.org/mixs + keywords: + - type + string_serialization: '{term} or {text}' + slot_uri: MIXS:0001322 + recommended: true + potassium: + name: potassium + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of potassium in the sample + title: potassium + examples: + - value: 463 milligram per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000430 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + pour_point: + name: pour_point + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: 'Temperature at which a liquid becomes semi solid and loses its flow + characteristics. In crude oil a high pour point is generally associated with + a high paraffin content, typically found in crude deriving from a larger proportion + of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)' + title: pour point + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000127 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + pre_treatment: + name: pre_treatment + annotations: + Expected_value: + tag: Expected_value + value: pre-treatment type + description: The process of pre-treatment removes materials that can be easily + collected from the raw wastewater + title: pre-treatment + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000348 + range: string + pred_genome_struc: + name: pred_genome_struc + description: Expected structure of the viral genome + title: predicted genome structure + examples: + - value: non-segmented + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - predict + slot_uri: MIXS:0000083 + range: PredGenomeStrucEnum + pred_genome_type: + name: pred_genome_type + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Type of genome predicted for the UViG + title: predicted genome type + examples: + - value: dsDNA + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - predict + - type + string_serialization: '[DNA|dsDNA|ssDNA|RNA|dsRNA|ssRNA|ssRNA (+)|ssRNA (-)|mixed|uncharacterized]' + slot_uri: MIXS:0000082 + pregnancy: + name: pregnancy + description: Date due of pregnancy + title: pregnancy + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000966 + range: datetime + pres_animal_insect: + name: pres_animal_insect + annotations: + Expected_value: + tag: Expected_value + value: enumeration;count + description: The type and number of animals or insects present in the sampling + space + title: presence of pets, animals, or insects + examples: + - value: cat;5 + from_schema: https://w3id.org/mixs + keywords: + - animal + - presence + string_serialization: '[cat|dog|rodent|snake|other];{integer}' + slot_uri: MIXS:0000819 + pressure: + name: pressure + annotations: + Preferred_unit: + tag: Preferred_unit + value: atmosphere + description: Pressure to which the sample is subject to, in atmospheres + title: pressure + examples: + - value: 50 atmosphere + from_schema: https://w3id.org/mixs + keywords: + - pressure + slot_uri: MIXS:0000412 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + prev_land_use_meth: + name: prev_land_use_meth + description: Reference or method used in determining previous land use and dates + title: history/previous land use method + from_schema: https://w3id.org/mixs + keywords: + - history + - land + - method + - use + slot_uri: MIXS:0000316 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + previous_land_use: + name: previous_land_use + annotations: + Expected_value: + tag: Expected_value + value: land use name;date + description: Previous land use and dates + title: history/previous land use + examples: + - value: fallow; 2018-05-11:T14:30Z + from_schema: https://w3id.org/mixs + keywords: + - history + - land + - use + string_serialization: '{text};{timestamp}' + slot_uri: MIXS:0000315 + primary_prod: + name: primary_prod + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day, gram per square meter per day + description: Measurement of primary production, generally measured as isotope + uptake + title: primary production + examples: + - value: 100 milligram per cubic meter per day + from_schema: https://w3id.org/mixs + keywords: + - primary + - production + slot_uri: MIXS:0000728 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + primary_treatment: + name: primary_treatment + annotations: + Expected_value: + tag: Expected_value + value: primary treatment type + description: The process to produce both a generally homogeneous liquid capable + of being treated biologically and a sludge that can be separately treated or + processed + title: primary treatment + from_schema: https://w3id.org/mixs + keywords: + - primary + - treatment + slot_uri: MIXS:0000349 + range: string + prod_label_claims: + name: prod_label_claims + description: Labeling claims containing descriptors such as wild caught, free-range, + organic, free-range, industrial, hormone-free, antibiotic free, cage free. Can + include more than one term, separated by ";" + title: production labeling claims + examples: + - value: free range + from_schema: https://w3id.org/mixs + keywords: + - production + slot_uri: MIXS:prod_label_claims + range: string + multivalued: true + prod_rate: + name: prod_rate + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per day + description: Oil and/or gas production rates per well (e.g. 524 m3 / day) + title: production rate + from_schema: https://w3id.org/mixs + keywords: + - production + - rate + slot_uri: MIXS:0000452 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + prod_start_date: + name: prod_start_date + description: Date of field's first production + title: production start date + examples: + - value: '2013-03-25T12:42:31+01:00' + from_schema: https://w3id.org/mixs + keywords: + - date + - production + - start + slot_uri: MIXS:0001008 + range: datetime + recommended: true + profile_position: + name: profile_position + description: Cross-sectional position in the hillslope where sample was collected.sample + area position in relation to surrounding areas + title: profile position + examples: + - value: summit + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001084 + range: ProfilePositionEnum + project_name: + name: project_name + description: Name of the project within which the sequencing was organized + title: project name + examples: + - value: Forest soil metagenome + in_subset: + - investigation + from_schema: https://w3id.org/mixs + keywords: + - project + slot_uri: MIXS:0000092 + range: string + required: true + propagation: + name: propagation + annotations: + Expected_value: + tag: Expected_value + value: 'for virus: lytic, lysogenic, temperate, obligately lytic; for plasmid: + incompatibility group; for eukaryote: asexual, sexual; other more specific + values (e.g., incompatibility group) are allowed' + description: 'The type of reproduction from the parent stock. Values for this + field is specific to different taxa. For phage or virus: lytic/lysogenic/temperate/obligately + lytic. For plasmids: incompatibility group. For eukaryotes: sexual/asexual' + title: propagation + examples: + - value: lytic + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000033 + range: string + pulmonary_disord: + name: pulmonary_disord + description: History of pulmonary disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + lung disease (https://disease-ontology.org/?id=DOID:850) + title: lung/pulmonary disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000269 + range: string + multivalued: true + quad_pos: + name: quad_pos + description: The quadrant position of the sampling room within the building + title: quadrant position + examples: + - value: West side + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000820 + range: QuadPosEnum + radiation_regm: + name: radiation_regm + annotations: + Expected_value: + tag: Expected_value + value: radiation type name;radiation amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: rad, gray + description: Information about treatment involving exposure of plant or a plant + part to a particular radiation regimen; should include the radiation type, amount + or intensity administered, treatment regimen including how many times the treatment + was repeated, how long each treatment lasted, and the start and end time of + the entire treatment; can include multiple radiation regimens + title: radiation regimen + examples: + - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000575 + multivalued: true + rainfall_regm: + name: rainfall_regm + annotations: + Expected_value: + tag: Expected_value + value: measurement value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: millimeter + description: Information about treatment involving an exposure to a given amount + of rainfall, treatment regimen including how many times the treatment was repeated, + how long each treatment lasted, and the start and end time of the entire treatment; + can include multiple regimens + title: rainfall regimen + examples: + - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - rain + - regimen + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000576 + multivalued: true + reactor_type: + name: reactor_type + annotations: + Expected_value: + tag: Expected_value + value: reactor type name + description: Anaerobic digesters can be designed and engineered to operate using + a number of different process configurations, as batch or continuous, mesophilic, + high solid or low solid, and single stage or multistage + title: reactor type + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000350 + range: string + reassembly_bin: + name: reassembly_bin + description: Has an assembly been performed on a genome bin extracted from a metagenomic + assembly? + title: reassembly post binning + examples: + - value: 'no' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - post + slot_uri: MIXS:0000079 + range: boolean + redox_potential: + name: redox_potential + annotations: + Preferred_unit: + tag: Preferred_unit + value: millivolt + description: Redox potential, measured relative to a hydrogen cell, indicating + oxidation or reduction potential + title: redox potential + examples: + - value: 300 millivolt + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000182 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ref_biomaterial: + name: ref_biomaterial + description: Primary publication if isolated before genome publication; otherwise, + primary genome report + title: reference for biomaterial + examples: + - value: doi:10.1016/j.syapm.2018.01.009 + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000025 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + ref_db: + name: ref_db + annotations: + Expected_value: + tag: Expected_value + value: names, versions, and references of databases + description: List of database(s) used for ORF annotation, along with version number + and reference to website or publication + title: reference database(s) + examples: + - value: pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 + doi:10.1093/nar/gkw975 + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - database + string_serialization: '{database};{version};{reference}' + slot_uri: MIXS:0000062 + rel_air_humidity: + name: rel_air_humidity + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Partial vapor and air pressure, density of the vapor and air, or + by the actual mass of the vapor and air + title: relative air humidity + comments: + - percent or float? + examples: + - value: '0.8' + from_schema: https://w3id.org/mixs + keywords: + - air + - humidity + - relative + slot_uri: MIXS:0000121 + range: float + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + rel_humidity_out: + name: rel_humidity_out + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram of air, kilogram of air + description: The recorded outside relative humidity value at the time of sampling + title: outside relative humidity + examples: + - value: 12 per kilogram of air + from_schema: https://w3id.org/mixs + keywords: + - humidity + - relative + slot_uri: MIXS:0000188 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + rel_location: + name: rel_location + description: Location of sampled soil to other parts of the farm e.g. under crop + plant, near irrigation ditch, from the dirt road + title: relative location of sample + examples: + - value: furrow + from_schema: https://w3id.org/mixs + keywords: + - location + - relative + - sample + slot_uri: MIXS:0001161 + range: string + rel_samp_loc: + name: rel_samp_loc + description: The sampling location within the train car + title: relative sampling location + examples: + - value: center of car + from_schema: https://w3id.org/mixs + keywords: + - location + - relative + slot_uri: MIXS:0000821 + range: RelSampLocEnum + rel_to_oxygen: + name: rel_to_oxygen + description: Is this organism an aerobe, anaerobe? Please note that aerobic and + anaerobic are valid descriptors for microbial environments + title: relationship to oxygen + examples: + - value: aerobe + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - oxygen + - relationship + slot_uri: MIXS:0000015 + range: RelToOxygenEnum + repository_name: + name: repository_name + annotations: + Expected_value: + tag: Expected_value + value: Institution + description: The name of the institution where the sample or DNA extract is held + or "sample not available" if the sample was used in its entirety for analysis + or otherwise not retained + title: repository name + examples: + - value: FDA CFSAN Microbiology Laboratories + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001152 + range: string + multivalued: true + reservoir: + name: reservoir + description: Name of the reservoir (e.g. Carapebus) + title: reservoir name + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000303 + range: string + recommended: true + resins_pc: + name: resins_pc + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: + https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: resins wt% + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000134 + range: string + recommended: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + room_air_exch_rate: + name: room_air_exch_rate + annotations: + Preferred_unit: + tag: Preferred_unit + value: liter per hour + description: The rate at which outside air replaces indoor air in a given space + title: room air exchange rate + from_schema: https://w3id.org/mixs + keywords: + - air + - rate + - room + slot_uri: MIXS:0000169 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + room_architec_elem: + name: room_architec_elem + description: The unique details and component parts that, together, form the architecture + of a distinguisahable space within a built structure + title: room architectural elements + from_schema: https://w3id.org/mixs + keywords: + - room + slot_uri: MIXS:0000233 + range: string + room_condt: + name: room_condt + description: The condition of the room at the time of sampling + title: room condition + examples: + - value: new + from_schema: https://w3id.org/mixs + keywords: + - condition + - room + slot_uri: MIXS:0000822 + range: RoomCondtEnum + room_connected: + name: room_connected + description: List of rooms connected to the sampling room by a doorway + title: rooms connected by a doorway + examples: + - value: office + from_schema: https://w3id.org/mixs + keywords: + - doorway + - room + slot_uri: MIXS:0000826 + range: RoomConnectedEnum + room_count: + name: room_count + description: The total count of rooms in the built structure including all room + types + title: room count + from_schema: https://w3id.org/mixs + keywords: + - count + - room + slot_uri: MIXS:0000234 + range: integer + room_dim: + name: room_dim + annotations: + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: meter + description: The length, width and height of sampling room + title: room dimensions + examples: + - value: 4 meter x 4 meter x 4 meter + from_schema: https://w3id.org/mixs + keywords: + - dimensions + - room + string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}' + slot_uri: MIXS:0000192 + room_door_dist: + name: room_door_dist + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Distance between doors (meters) in the hallway between the sampling + room and adjacent rooms + title: room door distance + from_schema: https://w3id.org/mixs + keywords: + - distance + - door + - room + slot_uri: MIXS:0000193 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_door_share: + name: room_door_share + description: List of room(s) (room number, room name) sharing a door with the + sampling room + title: rooms that share a door with sampling room + from_schema: https://w3id.org/mixs + keywords: + - door + - room + slot_uri: MIXS:0000242 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + room_hallway: + name: room_hallway + description: List of room(s) (room number, room name) located in the same hallway + as sampling room + title: rooms that are on the same hallway + from_schema: https://w3id.org/mixs + keywords: + - hallway + - room + slot_uri: MIXS:0000238 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + room_loc: + name: room_loc + description: The position of the room within the building + title: room location in building + examples: + - value: interior room + from_schema: https://w3id.org/mixs + keywords: + - location + - room + slot_uri: MIXS:0000823 + range: RoomLocEnum + room_moist_dam_hist: + name: room_moist_dam_hist + description: The history of moisture damage or mold in the past 12 months. Number + of events of moisture damage or mold observed + title: room moisture damage or mold history + from_schema: https://w3id.org/mixs + keywords: + - history + - moisture + - room + slot_uri: MIXS:0000235 + range: integer + room_net_area: + name: room_net_area + annotations: + Preferred_unit: + tag: Preferred_unit + value: square feet, square meter + description: The net floor area of sampling room. Net area excludes wall thicknesses + title: room net area + from_schema: https://w3id.org/mixs + keywords: + - area + - room + slot_uri: MIXS:0000194 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_occup: + name: room_occup + description: Count of room occupancy at time of sampling + title: room occupancy + from_schema: https://w3id.org/mixs + keywords: + - room + slot_uri: MIXS:0000236 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_samp_pos: + name: room_samp_pos + description: The horizontal sampling position in the room relative to architectural + elements + title: room sampling position + examples: + - value: south corner + from_schema: https://w3id.org/mixs + keywords: + - room + slot_uri: MIXS:0000824 + range: RoomSampPosEnum + room_type: + name: room_type + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The main purpose or activity of the sampling room. A room is any + distinguishable space within a structure + title: room type + examples: + - value: bathroom + from_schema: https://w3id.org/mixs + keywords: + - room + - type + string_serialization: '[attic|bathroom|closet|conference room|elevator|examining + room|hallway|kitchen|mail room|private office|open office|stairwell|,restroom|lobby|vestibule|mechanical + or electrical room|data center|laboratory_wet|laboratory_dry|gymnasium|natatorium|auditorium|lockers|cafe|warehouse]' + slot_uri: MIXS:0000825 + room_vol: + name: room_vol + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic feet, cubic meter + description: Volume of sampling room + title: room volume + from_schema: https://w3id.org/mixs + keywords: + - room + - volume + slot_uri: MIXS:0000195 + range: string + pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_wall_share: + name: room_wall_share + description: List of room(s) (room number, room name) sharing a wall with the + sampling room + title: rooms that share a wall with sampling room + from_schema: https://w3id.org/mixs + keywords: + - room + - wall + slot_uri: MIXS:0000243 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + room_window_count: + name: room_window_count + description: Number of windows in the room + title: room window count + from_schema: https://w3id.org/mixs + keywords: + - count + - room + - window + slot_uri: MIXS:0000237 + range: integer + root_cond: + name: root_cond + description: Relevant rooting conditions such as field plot size, sowing density, + container dimensions, number of plants per container + title: rooting conditions + examples: + - value: http://himedialabs.com/TD/PT158.pdf + from_schema: https://w3id.org/mixs + keywords: + - condition + slot_uri: MIXS:0001061 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + root_med_carbon: + name: root_med_carbon + annotations: + Expected_value: + tag: Expected_value + value: carbon source name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Source of organic carbon in the culture rooting medium; e.g. sucrose + title: rooting medium carbon + examples: + - value: sucrose + from_schema: https://w3id.org/mixs + keywords: + - carbon + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000577 + root_med_macronutr: + name: root_med_macronutr + annotations: + Expected_value: + tag: Expected_value + value: macronutrient name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Measurement of the culture rooting medium macronutrients (N,P, K, + Ca, Mg, S); e.g. KH2PO4 (170 mg/L) + title: rooting medium macronutrients + examples: + - value: KH2PO4;170 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - macronutrients + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000578 + root_med_micronutr: + name: root_med_micronutr + annotations: + Expected_value: + tag: Expected_value + value: micronutrient name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Measurement of the culture rooting medium micronutrients (Fe, Mn, + Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L) + title: rooting medium micronutrients + examples: + - value: H3BO3;6.2 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - micronutrients + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000579 + root_med_ph: + name: root_med_ph + description: pH measurement of the culture rooting medium; e.g. 5.5 + title: rooting medium pH + examples: + - value: '7.5' + from_schema: https://w3id.org/mixs + keywords: + - ph + slot_uri: MIXS:0001062 + range: float + root_med_regl: + name: root_med_regl + annotations: + Expected_value: + tag: Expected_value + value: regulator name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Growth regulators in the culture rooting medium such as cytokinins, + auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA + title: rooting medium regulators + examples: + - value: abscisic acid;0.75 milligram per liter + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000581 + root_med_solid: + name: root_med_solid + description: Specification of the solidifying agent in the culture rooting medium; + e.g. agar + title: rooting medium solidifier + examples: + - value: agar + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001063 + range: string + root_med_suppl: + name: root_med_suppl + annotations: + Expected_value: + tag: Expected_value + value: supplement name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Organic supplements of the culture rooting medium, such as vitamins, + amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid + (0.5 mg/L) + title: rooting medium organic supplements + examples: + - value: nicotinic acid;0.5 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - organic + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000580 + route_transmission: + name: route_transmission + description: Description of path taken by the symbiotic host organism being sampled + in order to establish a symbiotic relationship with the host (with which it + was observed at the time of sampling) via a mode of transmission (specified + in mode_transmission) + title: route of transmission + from_schema: https://w3id.org/mixs + keywords: + - route + slot_uri: MIXS:0001316 + range: RouteTransmissionEnum + salinity: + name: salinity + annotations: + Preferred_unit: + tag: Preferred_unit + value: practical salinity unit, percentage + description: The total concentration of all dissolved salts in a liquid or solid + sample. While salinity can be measured by a complete chemical analysis, this + method is difficult and time consuming. More often, it is instead derived from + the conductivity measurement. This is known as practical salinity. These derivations + compare the specific conductance of the sample to a salinity standard such as + seawater + title: salinity + examples: + - value: 25 practical salinity unit + from_schema: https://w3id.org/mixs + keywords: + - salinity + slot_uri: MIXS:0000183 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + salt_regm: + name: salt_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter + description: Information about treatment involving use of salts as supplement + to liquid and soil growth media; should include the name of salt, amount administered, + treatment regimen including how many times the treatment was repeated, how long + each treatment lasted, and the start and end time of the entire treatment; can + include multiple salt regimens + title: salt regimen + examples: + - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + - salt + slot_uri: MIXS:0000582 + range: string + multivalued: true + samp_capt_status: + name: samp_capt_status + description: Reason for the sample + title: sample capture status + examples: + - value: farm sample + from_schema: https://w3id.org/mixs + keywords: + - sample + - status + slot_uri: MIXS:0000860 + range: SampCaptStatusEnum + samp_collect_device: + name: samp_collect_device + annotations: + Expected_value: + tag: Expected_value + value: device name + description: The device used to collect an environmental sample. This field accepts + terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). + This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094) + title: sample collection device + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - device + - sample + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0000002 + samp_collect_method: + name: samp_collect_method + description: The method employed for collecting the sample + title: sample collection method + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - method + - sample + slot_uri: MIXS:0001225 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + samp_collect_point: + name: samp_collect_point + description: Sampling point on the asset were sample was collected (e.g. Wellhead, + storage tank, separator, etc). If "other" is specified, please propose entry + in "additional info" field + title: sample collection point + examples: + - value: well + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0001015 + range: SampCollectPointEnum + required: true + samp_dis_stage: + name: samp_dis_stage + description: Stage of the disease at the time of sample collection, e.g. inoculation, + penetration, infection, growth and reproduction, dissemination of pathogen + title: sample disease stage + examples: + - value: infection + from_schema: https://w3id.org/mixs + keywords: + - disease + - sample + slot_uri: MIXS:0000249 + range: SampDisStageEnum + samp_floor: + name: samp_floor + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The floor of the building, where the sampling room is located + title: sampling floor + examples: + - value: 4th floor + from_schema: https://w3id.org/mixs + keywords: + - floor + string_serialization: '[1st floor|2nd floor|{integer} floor|basement|lobby]' + slot_uri: MIXS:0000828 + samp_loc_condition: + name: samp_loc_condition + description: The condition of the sample location at the time of sampling + title: sample location condition + examples: + - value: new + from_schema: https://w3id.org/mixs + keywords: + - condition + - location + - sample + slot_uri: MIXS:0001257 + range: SampLocConditionEnum + samp_loc_corr_rate: + name: samp_loc_corr_rate + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter per year + description: Metal corrosion rate is the speed of metal deterioration due to environmental + conditions. As environmental conditions change corrosion rates change accordingly. + Therefore, long term corrosion rates are generally more informative than short + term rates and for that reason they are preferred during reporting. In the case + of suspected MIC, corrosion rate measurements at the time of sampling might + provide insights into the involvement of certain microbial community members + in MIC as well as potential microbial interplays + title: corrosion rate at sample location + from_schema: https://w3id.org/mixs + keywords: + - location + - rate + - sample + slot_uri: MIXS:0000136 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{float} *- *{float} {unit}$ + interpolated: true + partial_match: true + samp_mat_process: + name: samp_mat_process + description: A brief description of any processing applied to the sample during + or after retrieving the sample from environment, or a link to the relevant protocol(s) + performed + title: sample material processing + examples: + - value: filtering of seawater, storing samples in ethanol + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - material + - process + - sample + slot_uri: MIXS:0000016 + range: string + samp_md: + name: samp_md + annotations: + Expected_value: + tag: Expected_value + value: measurement value;enumeration + Preferred_unit: + tag: Preferred_unit + value: meter + description: In non deviated well, measured depth is equal to the true vertical + depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated + wells, the MD is the length of trajectory of the borehole measured from the + same reference or datum. Common datums used are ground level (GL), drilling + rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). + If "other" is specified, please propose entry in "additional info" field + title: sample measured depth + examples: + - value: 1534 meter;MSL + from_schema: https://w3id.org/mixs + keywords: + - depth + - measurement + - sample + string_serialization: '{float} {unit};[GL|DF|RT|KB|MSL|other]' + slot_uri: MIXS:0000413 + samp_name: + name: samp_name + annotations: + Preferred_unit: + tag: Preferred_unit + value: '' + description: A local identifier or name that for the material sample used for + extracting nucleic acids, and subsequent sequencing. It can refer either to + the original material collected or to any derived sub-samples. It can have any + format, but we suggest that you make it concise, unique and consistent within + your lab, and as informative as possible. INSDC requires every sample name from + a single Submitter to be unique. Use of a globally unique identifier for the + field source_mat_id is recommended in addition to sample_name + title: sample name + examples: + - value: ISDsoil1 + in_subset: + - investigation + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0001107 + range: string + required: true + samp_pooling: + name: samp_pooling + description: Physical combination of several instances of like material, e.g. + RNA extracted from samples or dishes of cell cultures into one big aliquot of + cells. Please provide a short description of the samples that were pooled + title: sample pooling + examples: + - value: 5uL of extracted genomic DNA from 5 leaves were pooled + from_schema: https://w3id.org/mixs + keywords: + - pooling + - sample + slot_uri: MIXS:0001153 + range: string + multivalued: true + samp_preserv: + name: samp_preserv + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliliter + description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, + etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml) + title: preservative added to sample + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0000463 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + samp_purpose: + name: samp_purpose + annotations: + Expected_value: + tag: Expected_value + value: enumeration or {text} + description: The reason that the sample was collected + title: purpose of sampling + examples: + - value: field trial + from_schema: https://w3id.org/mixs + keywords: + - purpose + string_serialization: '[active surveillance in response to an outbreak|active + surveillance not initiated by an outbreak|clinical trial|cluster investigation|environmental + assessment|farm sample|field trial|for cause|industry internal investigation|market + sample|passive surveillance|population based studies|research|research and development] + or {text}' + slot_uri: MIXS:0001151 + samp_rep_biol: + name: samp_rep_biol + description: Measurements of biologically distinct samples that show biological + variation + title: biological sample replicate + examples: + - value: 6 replicates + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0001226 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_rep_tech: + name: samp_rep_tech + description: Repeated measurements of the same sample that show independent measures + of the noise associated with the equipment and the protocols + title: technical sample replicate + examples: + - value: 10 replicates + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0001227 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_room_id: + name: samp_room_id + description: Sampling room number. This ID should be consistent with the designations + on the building floor plans + title: sampling room ID or name + from_schema: https://w3id.org/mixs + keywords: + - identifier + - room + slot_uri: MIXS:0000244 + range: integer + samp_size: + name: samp_size + description: The total amount or size (volume (ml), mass (g) or area (m2) ) of + sample collected + title: amount or size of sample collected + examples: + - value: 5 liter + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - sample + - size + slot_uri: MIXS:0000001 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_sort_meth: + name: samp_sort_meth + description: Method by which samples are sorted; open face filter collecting total + suspended particles, prefilter to remove particles larger than X micrometers + in diameter, where common values of X would be 10 and 2.5 full size sorting + in a cascade impactor + title: sample size sorting method + from_schema: https://w3id.org/mixs + keywords: + - method + - sample + - size + slot_uri: MIXS:0000216 + range: string + multivalued: true + samp_source_mat_cat: + name: samp_source_mat_cat + annotations: + Expected_value: + tag: Expected_value + value: GENEPIO:0001237 + description: This is the scientific role or category that the subject organism + or material has with respect to an investigation. This field accepts terms + listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237 + or http://purl.obolibrary.org/obo/OBI_0100051) + title: sample source material category + examples: + - value: environmental (swab or sampling) [GENEPIO:0001732] + from_schema: https://w3id.org/mixs + keywords: + - material + - sample + - source + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0001154 + samp_stor_device: + name: samp_stor_device + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C4318 + description: The container used to store the sample. This field accepts terms + listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the + proper descriptor is not listed please use text to describe the storage device + title: sample storage device + examples: + - value: Whirl Pak sampling bag [GENEPIO:0002122] + from_schema: https://w3id.org/mixs + keywords: + - device + - sample + - storage + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001228 + samp_stor_media: + name: samp_stor_media + description: The liquid that is added to the sample collection device prior to + sampling. If the sample is pre-hydrated, indicate the liquid media the sample + is pre-hydrated with for storage purposes. This field accepts terms listed under + microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). + If the proper descriptor is not listed please use text to describe the sample + storage media + title: sample storage media + examples: + - value: peptone water medium [MICRO:0000548] + from_schema: https://w3id.org/mixs + keywords: + - sample + - storage + slot_uri: MIXS:0001229 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + samp_store_dur: + name: samp_store_dur + description: Duration for which the sample was stored. Indicate the duration for + which the sample was stored written in ISO 8601 format + title: sample storage duration + examples: + - value: P1Y6M + from_schema: https://w3id.org/mixs + keywords: + - duration + - period + - sample + - storage + slot_uri: MIXS:0000116 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + samp_store_loc: + name: samp_store_loc + annotations: + Expected_value: + tag: Expected_value + value: location name + description: Location at which sample was stored, usually name of a specific freezer/room + title: sample storage location + examples: + - value: Freezer no:5 + from_schema: https://w3id.org/mixs + keywords: + - location + - sample + - storage + slot_uri: MIXS:0000755 + range: string + samp_store_sol: + name: samp_store_sol + annotations: + Expected_value: + tag: Expected_value + value: solution name + description: Solution within which sample was stored, if any + title: sample storage solution + examples: + - value: 5% ethanol + from_schema: https://w3id.org/mixs + keywords: + - sample + - storage + slot_uri: MIXS:0001317 + range: string + samp_store_temp: + name: samp_store_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which sample was stored, e.g. -80 degree Celsius + title: sample storage temperature + examples: + - value: -80 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - sample + - storage + - temperature + slot_uri: MIXS:0000110 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_subtype: + name: samp_subtype + description: Name of sample sub-type. For example if "sample type" is "Produced + Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified, + please propose entry in "additional info" field + title: sample subtype + examples: + - value: biofilm + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0000999 + range: SampSubtypeEnum + recommended: true + samp_surf_moisture: + name: samp_surf_moisture + description: Degree of water held on a sampled surface. If present, user can + state the degree of water held on surface (intermittent moisture, submerged). + If no surface moisture is present indicate not present + title: sample surface moisture + examples: + - value: submerged + from_schema: https://w3id.org/mixs + keywords: + - moisture + - sample + - surface + slot_uri: MIXS:0001256 + range: SampSurfMoistureEnum + multivalued: true + samp_taxon_id: + name: samp_taxon_id + description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa + sample. Use 'synthetic metagenome for mock community/positive controls, or + 'blank sample' for negative controls + title: taxonomy ID of DNA sample + examples: + - value: Gut Metagenome [NCBITaxon:749906] + in_subset: + - investigation + from_schema: https://w3id.org/mixs + keywords: + - dna + - identifier + - sample + - taxon + slot_uri: MIXS:0001320 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$ + structured_pattern: + syntax: ^{text} \[{NCBItaxon_id}\]$ + interpolated: true + partial_match: true + samp_time_out: + name: samp_time_out + annotations: + Expected_value: + tag: Expected_value + value: time + Preferred_unit: + tag: Preferred_unit + value: hour + description: The recent and long term history of outside sampling + title: sampling time outside + from_schema: https://w3id.org/mixs + keywords: + - time + string_serialization: '{float}' + slot_uri: MIXS:0000196 + samp_transport_cond: + name: samp_transport_cond + annotations: + Expected_value: + tag: Expected_value + value: measurement value;measurement value + Preferred_unit: + tag: Preferred_unit + value: days;degree Celsius + description: Sample transport duration (in days or hrs) and temperature the sample + was exposed to (e.g. 5.5 days; 20 C) + title: sample transport conditions + examples: + - value: 5 days;-20 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - condition + - sample + - transport + string_serialization: '{float} {unit};{float} {unit}' + slot_uri: MIXS:0000410 + samp_transport_cont: + name: samp_transport_cont + description: Conatiner in which the sample was stored during transport. Indicate + the location name + title: sample transport container + examples: + - value: cooler + from_schema: https://w3id.org/mixs + keywords: + - sample + - transport + slot_uri: MIXS:0001230 + range: SampTransportContEnum + samp_transport_dur: + name: samp_transport_dur + annotations: + Preferred_unit: + tag: Preferred_unit + value: days + description: The duration of time from when the sample was collected until processed. + Indicate the duration for which the sample was stored written in ISO 8601 format + title: sample transport duration + examples: + - value: P10D + from_schema: https://w3id.org/mixs + keywords: + - duration + - period + - sample + - transport + slot_uri: MIXS:0001231 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + samp_transport_temp: + name: samp_transport_temp + annotations: + Expected_value: + tag: Expected_value + value: text or measurement value + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which sample was transported, e.g. -20 or 4 degree + Celsius + title: sample transport temperature + examples: + - value: 4 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - sample + - temperature + - transport + string_serialization: '{float} {unit} {text}' + slot_uri: MIXS:0001232 + samp_tvdss: + name: samp_tvdss + annotations: + Expected_value: + tag: Expected_value + value: measurement value or measurement value range + Preferred_unit: + tag: Preferred_unit + value: meter + description: Depth of the sample i.e. The vertical distance between the sea level + and the sampled position in the subsurface. Depth can be reported as an interval + for subsurface samples e.g. 1325.75-1362.25 m + title: sample true vertical depth subsea + from_schema: https://w3id.org/mixs + keywords: + - depth + - sample + string_serialization: '{float}-{float} {unit}' + slot_uri: MIXS:0000409 + recommended: true + samp_type: + name: samp_type + description: The type of material from which the sample was obtained. For the + Hydrocarbon package, samples include types like core, rock trimmings, drill + cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, + produced water, injected water, swabs, etc. For the Food Package, samples are + usually categorized as food, body products or tissues, or environmental material. + This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246) + title: sample type + examples: + - value: built environment sample [GENEPIO:0001248] + from_schema: https://w3id.org/mixs + keywords: + - sample + - type + slot_uri: MIXS:0000998 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + samp_vol_we_dna_ext: + name: samp_vol_we_dna_ext + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliliter, gram, milligram, square centimeter + description: 'Volume (ml) or mass (g) of total collected sample processed for + DNA extraction. Note: total sample collected should be entered under the term + Sample Size (MIXS:0000001)' + title: sample volume or weight for DNA extraction + examples: + - value: 1500 milliliter + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - dna + - sample + - volume + - weight + slot_uri: MIXS:0000111 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_weather: + name: samp_weather + description: The weather on the sampling day + title: sampling day weather + examples: + - value: foggy + from_schema: https://w3id.org/mixs + keywords: + - day + - weather + slot_uri: MIXS:0000827 + range: SampWeatherEnum + samp_well_name: + name: samp_well_name + description: Name of the well (e.g. BXA1123) where sample was taken + title: sample well name + from_schema: https://w3id.org/mixs + keywords: + - sample + slot_uri: MIXS:0000296 + range: string + recommended: true + saturates_pc: + name: saturates_pc + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: + https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: saturates wt% + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000131 + range: string + recommended: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + sc_lysis_approach: + name: sc_lysis_approach + description: Method used to free DNA from interior of the cell(s) or particle(s) + title: single cell or viral particle lysis approach + examples: + - value: enzymatic + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - particle + - single + slot_uri: MIXS:0000076 + range: ScLysisApproachEnum + sc_lysis_method: + name: sc_lysis_method + annotations: + Expected_value: + tag: Expected_value + value: kit, protocol name + description: Name of the kit or standard protocol used for cell(s) or particle(s) + lysis + title: single cell or viral particle lysis kit protocol + examples: + - value: ambion single cell lysis kit + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - kit + - particle + - protocol + - single + slot_uri: MIXS:0000054 + range: string + season: + name: season + annotations: + Expected_value: + tag: Expected_value + value: autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], winter + [NCIT:C94730] + description: The season when sampling occurred. Any of the four periods into which + the year is divided by the equinoxes and solstices. This field accepts terms + listed under season (http://purl.obolibrary.org/obo/NCIT_C94729) + title: season + comments: + - autumn [NCIT:C94733] does not match ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$ + - would require ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\]$ + examples: + - value: autumn [NCIT:C94733] + from_schema: https://w3id.org/mixs + keywords: + - season + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000829 + range: string + pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:[a-zA-Z0-9]+\]$ + season_environment: + name: season_environment + description: Treatment involving an exposure to a particular season (e.g. Winter, + summer, rabi, rainy etc.), treatment regimen including how many times the treatment + was repeated, how long each treatment lasted, and the start and end time of + the entire treatment + title: seasonal environment + examples: + - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - environment + - season + slot_uri: MIXS:0001068 + range: string + multivalued: true + season_humidity: + name: season_humidity + description: Average humidity of the region throughout the growing season + title: mean seasonal humidity + comments: + - percent or float? + examples: + - value: '0.25' + from_schema: https://w3id.org/mixs + keywords: + - humidity + - mean + - season + slot_uri: MIXS:0001148 + range: float + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + season_precpt: + name: season_precpt + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter + description: The average of all seasonal precipitation values known, or an estimated + equivalent value derived by such methods as regional indexes or Isohyetal maps + title: mean seasonal precipitation + examples: + - value: 75 millimeters + from_schema: https://w3id.org/mixs + keywords: + - mean + - season + slot_uri: MIXS:0000645 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + season_temp: + name: season_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Mean seasonal temperature + title: mean seasonal temperature + examples: + - value: 18 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - mean + - season + - temperature + slot_uri: MIXS:0000643 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + season_use: + name: season_use + description: The seasons the space is occupied + title: seasonal use + examples: + - value: Winter + from_schema: https://w3id.org/mixs + keywords: + - season + - use + slot_uri: MIXS:0000830 + range: SeasonUseEnum + secondary_treatment: + name: secondary_treatment + annotations: + Expected_value: + tag: Expected_value + value: secondary treatment type + description: The process for substantially degrading the biological content of + the sewage + title: secondary treatment + from_schema: https://w3id.org/mixs + keywords: + - secondary + - treatment + slot_uri: MIXS:0000351 + range: string + sediment_type: + name: sediment_type + description: Information about the sediment type based on major constituents + title: sediment type + examples: + - value: biogenous + from_schema: https://w3id.org/mixs + keywords: + - sediment + - type + slot_uri: MIXS:0001078 + range: SedimentTypeEnum + seq_meth: + name: seq_meth + description: Sequencing machine used. Where possible the term should be taken + from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103) + title: sequencing method + examples: + - value: 454 Genome Sequencer FLX [OBI:0000702] + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - method + slot_uri: MIXS:0000050 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + seq_quality_check: + name: seq_quality_check + annotations: + Expected_value: + tag: Expected_value + value: none or manually edited + description: Indicate if the sequence has been called by automatic systems (none) + or undergone a manual editing procedure (e.g. by inspecting the raw data or + chromatograms). Applied only for sequences that are not submitted to SRA,ENA + or DRA + title: sequence quality check + examples: + - value: none + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - quality + slot_uri: MIXS:0000051 + range: SeqQualityCheckEnum + sequencing_kit: + name: sequencing_kit + annotations: + Expected_value: + tag: Expected_value + value: name of sequencing kit used + description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved + chemistry, cluster density and read length as well as improve quality (Q) scores. + Reagent components are encoded to interact with the sequencing system to validate + compatibility with user-defined applications. Indicate name of the sequencing + kit + title: sequencing kit + examples: + - value: NextSeq 500/550 High Output Kit v2.5 (75 Cycles) + from_schema: https://w3id.org/mixs + keywords: + - kit + slot_uri: MIXS:0001155 + range: string + sequencing_location: + name: sequencing_location + description: The location the sequencing run was performed. Indicate the name + of the lab or core facility where samples were sequenced + title: sequencing location + examples: + - value: University of Maryland Genomics Resource Center + from_schema: https://w3id.org/mixs + keywords: + - location + slot_uri: MIXS:0001156 + range: string + serovar_or_serotype: + name: serovar_or_serotype + description: A characterization of a cell or microorganism based on the antigenic + properties of the molecules on its surface. Indicate the name of a serovar or + serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy + title: serovar or serotype + examples: + - value: Escherichia coli strain O157:H7 [NCIT:C86883] + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0001157 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + sewage_type: + name: sewage_type + annotations: + Expected_value: + tag: Expected_value + value: sewage type name + description: Type of wastewater treatment plant as municipial or industrial + title: sewage type + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000215 + range: string + sexual_act: + name: sexual_act + annotations: + Expected_value: + tag: Expected_value + value: partner sex;frequency + description: Current sexual partner and frequency of sex + title: sexual activity + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000285 + range: string + shad_dev_water_mold: + name: shad_dev_water_mold + description: Signs of the presence of mold or mildew on the shading device + title: shading device signs of water/mold + examples: + - value: no presence of mold visible + from_schema: https://w3id.org/mixs + keywords: + - device + slot_uri: MIXS:0000834 + range: MoldVisibilityEnum + shading_device_cond: + name: shading_device_cond + description: The physical condition of the shading device at the time of sampling + title: shading device condition + examples: + - value: new + from_schema: https://w3id.org/mixs + keywords: + - condition + - device + slot_uri: MIXS:0000831 + range: DamagedRupturedEnum + shading_device_loc: + name: shading_device_loc + description: The location of the shading device in relation to the built structure + title: shading device location + examples: + - value: exterior + from_schema: https://w3id.org/mixs + keywords: + - device + - location + slot_uri: MIXS:0000832 + range: ShadingDeviceLocEnum + shading_device_mat: + name: shading_device_mat + annotations: + Expected_value: + tag: Expected_value + value: material name + description: The material the shading device is composed of + title: shading device material + from_schema: https://w3id.org/mixs + keywords: + - device + - material + slot_uri: MIXS:0000245 + range: string + shading_device_type: + name: shading_device_type + description: The type of shading device + title: shading device type + examples: + - value: slatted aluminum + description: was slatted aluminum awning + from_schema: https://w3id.org/mixs + keywords: + - device + - type + slot_uri: MIXS:0000835 + range: ShadingDeviceTypeEnum + sieving: + name: sieving + annotations: + Expected_value: + tag: Expected_value + value: design name and/or size;amount + description: Collection design of pooled samples and/or sieve size and amount + of sample sieved + title: sieving + from_schema: https://w3id.org/mixs + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000322 + silicate: + name: silicate + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of silicate + title: silicate + examples: + - value: 0.05 micromole per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000184 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sim_search_meth: + name: sim_search_meth + description: Tool used to compare ORFs with database, along with version and cutoffs + used + title: similarity search method + examples: + - value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - method + slot_uri: MIXS:0000063 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + size_frac: + name: size_frac + annotations: + Expected_value: + tag: Expected_value + value: filter size value range + description: Filtering pore size used in sample preparation + title: size fraction selected + examples: + - value: 0-0.22 micrometer + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - fraction + - size + string_serialization: '{float}-{float} {unit}' + slot_uri: MIXS:0000017 + size_frac_low: + name: size_frac_low + annotations: + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample. + Materials smaller than the size threshold are excluded from the sample + title: size-fraction lower threshold + examples: + - value: 0.2 micrometer + from_schema: https://w3id.org/mixs + keywords: + - lower + slot_uri: MIXS:0000735 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + size_frac_up: + name: size_frac_up + annotations: + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Mesh or pore size of the device used to retain the sample. Materials + larger than the size threshold are excluded from the sample. + title: size-fraction upper threshold + examples: + - value: 20 micrometer + from_schema: https://w3id.org/mixs + keywords: + - upper + slot_uri: MIXS:0000736 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + slope_aspect: + name: slope_aspect + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree + description: The direction a slope faces. While looking down a slope use a compass + to record the direction you are facing (direction or degrees); e.g., nw or 315 + degrees. This measure provides an indication of sun and wind exposure that will + influence soil temperature and evapotranspiration + title: slope aspect + from_schema: https://w3id.org/mixs + keywords: + - slope + slot_uri: MIXS:0000647 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + slope_gradient: + name: slope_gradient + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Commonly called 'slope'. The angle between ground surface and a horizontal + line (in percent). This is the direction that overland water would flow. This + measure is usually taken with a hand level meter or clinometer + title: slope gradient + from_schema: https://w3id.org/mixs + keywords: + - slope + slot_uri: MIXS:0000646 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sludge_retent_time: + name: sludge_retent_time + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours + description: The time activated sludge remains in reactor + title: sludge retention time + from_schema: https://w3id.org/mixs + keywords: + - time + slot_uri: MIXS:0000669 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + smoker: + name: smoker + description: Specification of smoking status + title: smoker + examples: + - value: 'yes' + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000262 + range: boolean + sodium: + name: sodium + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Sodium concentration in the sample + title: sodium + examples: + - value: 10.5 milligram per liter + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000428 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_conductivity: + name: soil_conductivity + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliSiemens per centimeter + title: soil conductivity + examples: + - value: 10 milliSiemens per centimeter + from_schema: https://w3id.org/mixs + keywords: + - soil + slot_uri: MIXS:0001158 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_cover: + name: soil_cover + annotations: + Expected_value: + tag: Expected_value + value: subclass of 'environmental material', http://purl.obolibrary.org/obo/ENVO_00010483 + description: Material covering the sampled soil. This field accepts terms under + ENVO:00010483, environmental material + title: soil cover + examples: + - value: bare soil [ENVO01001616] + from_schema: https://w3id.org/mixs + keywords: + - soil + string_serialization: bare soil [ENVO:01001616] + slot_uri: MIXS:0001159 + soil_horizon: + name: soil_horizon + description: Specific layer in the land area which measures parallel to the soil + surface and possesses physical characteristics which differ from the layers + above and beneath + title: soil horizon + examples: + - value: A horizon + from_schema: https://w3id.org/mixs + keywords: + - horizon + - soil + slot_uri: MIXS:0001082 + range: SoilHorizonEnum + soil_pH: + name: soil_pH + title: soil pH + examples: + - value: '7.2' + from_schema: https://w3id.org/mixs + keywords: + - ph + - soil + slot_uri: MIXS:0001160 + range: float + soil_porosity: + name: soil_porosity + annotations: + Expected_value: + tag: Expected_value + value: percent porosity + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Porosity of soil or deposited sediment is volume of voids divided + by the total volume of sample + title: soil sediment porosity + examples: + - value: '0.2' + from_schema: https://w3id.org/mixs + keywords: + - porosity + - sediment + - soil + string_serialization: '{percentage}' + slot_uri: MIXS:0001162 + soil_temp: + name: soil_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of soil at the time of sampling + title: soil temperature + examples: + - value: 25 degrees Celsius + from_schema: https://w3id.org/mixs + keywords: + - soil + - temperature + slot_uri: MIXS:0001163 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_texture: + name: soil_texture + description: The relative proportion of different grain sizes of mineral particles + in a soil, as described using a standard system; express as % sand (50 um to + 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty + clay loam) optional + title: soil texture + from_schema: https://w3id.org/mixs + keywords: + - soil + - texture + slot_uri: MIXS:0000335 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_texture_class: + name: soil_texture_class + description: One of the 12 soil texture classes use to describe soil texture based + on the relative proportion of different grain sizes of mineral particles [sand + (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil + title: soil texture classification + examples: + - value: silty clay loam + from_schema: https://w3id.org/mixs + keywords: + - classification + - soil + - texture + slot_uri: MIXS:0001164 + range: SoilTextureClassEnum + soil_texture_meth: + name: soil_texture_meth + description: Reference or method used in determining soil texture + title: soil texture method + examples: + - value: https://uwlab.soils.wisc.edu/wp-content/uploads/sites/17/2015/09/particle_size.pdf + from_schema: https://w3id.org/mixs + keywords: + - method + - soil + - texture + slot_uri: MIXS:0000336 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + soil_type: + name: soil_type + annotations: + Expected_value: + tag: Expected_value + value: ENVO:00001998 + description: Description of the soil type or classification. This field accepts + terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms + can be separated by pipes + title: soil type + examples: + - value: plinthosol [ENVO:00002250] + from_schema: https://w3id.org/mixs + keywords: + - soil + - type + slot_uri: MIXS:0000332 + soil_type_meth: + name: soil_type_meth + description: Reference or method used in determining soil series name or other + lower-level classification + title: soil type method + examples: + - value: https://www.lrh.usace.army.mil/Portals/38/docs/PR/BluestoneSFEIS/Appendix%20K-Soil%20Descriptions.pdf + from_schema: https://w3id.org/mixs + keywords: + - method + - soil + - type + slot_uri: MIXS:0000334 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + solar_irradiance: + name: solar_irradiance + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilowatts per square meter per day, ergs per square centimeter per + second + description: The amount of solar energy that arrives at a specific area of a surface + during a specific time interval + title: solar irradiance + examples: + - value: 1.36 kilowatts per square meter per day + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000112 + range: string + multivalued: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soluble_inorg_mat: + name: soluble_inorg_mat + annotations: + Expected_value: + tag: Expected_value + value: soluble inorganic material name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter, parts per million + description: Concentration of substances such as ammonia, road-salt, sea-salt, + cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc + title: soluble inorganic material + from_schema: https://w3id.org/mixs + keywords: + - inorganic + - material + - soluble + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000672 + multivalued: true + soluble_org_mat: + name: soluble_org_mat + annotations: + Expected_value: + tag: Expected_value + value: soluble organic material name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter, parts per million + description: Concentration of substances such as urea, fruit sugars, soluble proteins, + drugs, pharmaceuticals, etc + title: soluble organic material + from_schema: https://w3id.org/mixs + keywords: + - material + - organic + - soluble + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000673 + multivalued: true + soluble_react_phosp: + name: soluble_react_phosp + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of soluble reactive phosphorus + title: soluble reactive phosphorus + examples: + - value: 0.1 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - phosphorus + - soluble + slot_uri: MIXS:0000738 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sop: + name: sop + annotations: + Expected_value: + tag: Expected_value + value: reference to SOP + description: Standard operating procedures used in assembly and/or annotation + of genomes, metagenomes or environmental sequences + title: relevant standard operating procedures + examples: + - value: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/ + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - procedures + string_serialization: '{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0000090 + multivalued: true + sort_tech: + name: sort_tech + description: Method used to sort/isolate cells or particles of interest + title: sorting technology + examples: + - value: optical manipulation + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000075 + range: SortTechEnum + source_mat_id: + name: source_mat_id + annotations: + Expected_value: + tag: Expected_value + value: 'for cultures of microorganisms: identifiers for two culture collections; + for other material a unique arbitrary identifer' + description: A unique identifier assigned to a material sample (as defined by + http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular + digital record of a material sample) used for extracting nucleic acids, and + subsequent sequencing. The identifier can refer either to the original material + collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, + /bio_material, or /culture_collection may or may not share the same value as + the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id + may both contain 'UAM:Herps:14' , referring to both the specimen voucher and + sampled tissue with the same identifier. However, the /culture_collection qualifier + may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id + would refer to an identifier from some derived culture from which the nucleic + acids were extracted (e.g. xatc123 or ark:/2154/R2) + title: source material identifiers + examples: + - value: MPI012345 + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - identifier + - material + - source + slot_uri: MIXS:0000026 + range: string + multivalued: true + source_uvig: + name: source_uvig + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Type of dataset from which the UViG was obtained + title: source of UViGs + examples: + - value: viral fraction metagenome (virome) + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - source + string_serialization: '[metagenome (not viral targeted)|viral fraction metagenome + (virome)|sequence-targeted metagenome|metatranscriptome (not viral targeted)|viral + fraction RNA metagenome (RNA virome)|sequence-targeted RNA metagenome|microbial + single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate microbial + genome|other]' + slot_uri: MIXS:0000035 + space_typ_state: + name: space_typ_state + description: Customary or normal state of the space + title: space typical state + examples: + - value: typically occupied + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000770 + range: SpaceTypStateEnum + required: true + spec_intended_cons: + name: spec_intended_cons + description: Food consumer type, human or animal, for which the food product is + produced and marketed. This field accepts terms listed under food consumer group + (http://purl.obolibrary.org/obo/FOODON_03510136) + title: specific intended consumer + examples: + - value: senior as food consumer [FOODON:03510254] + from_schema: https://w3id.org/mixs + keywords: + - consumer + slot_uri: MIXS:0001234 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + special_diet: + name: special_diet + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Specification of special diet; can include multiple special diets + title: special diet + examples: + - value: other:vegan + from_schema: https://w3id.org/mixs + keywords: + - diet + string_serialization: '[low carb|reduced calorie|vegetarian|other(to be specified)]' + slot_uri: MIXS:0000905 + multivalued: true + specific: + name: specific + description: 'The building specifications. If design is chosen, indicate phase: + conceptual, schematic, design development, construction documents' + title: specifications + examples: + - value: construction + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000836 + range: SpecificEnum + specific_host: + name: specific_host + annotations: + Expected_value: + tag: Expected_value + value: host scientific name, taxonomy ID + description: Report the host's taxonomic name and/or NCBI taxonomy ID + title: host scientific name + examples: + - value: Homo sapiens and/or 9606 + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + string_serialization: '{text}|{NCBI taxid}' + slot_uri: MIXS:0000029 + specific_humidity: + name: specific_humidity + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram of air, kilogram of air + description: The mass of water vapour in a unit mass of moist air, usually expressed + as grams of vapour per kilogram of air, or, in air conditioning, as grains per + pound + title: specific humidity + examples: + - value: 15 per kilogram of air + from_schema: https://w3id.org/mixs + keywords: + - humidity + slot_uri: MIXS:0000214 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + spikein_AMR: + name: spikein_AMR + annotations: + Expected_value: + tag: Expected_value + value: measurement value ARO:3004299 + description: Qualitative description of a microbial response to antimicrobial + agents. Bacteria may be susceptible or resistant to a broad range of antibiotic + drugs or drug classes, with several intermediate states or phases. This field + accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299) + title: antimicrobial phenotype of spike-in bacteria + examples: + - value: wild type [ARO:3004432] + from_schema: https://w3id.org/mixs + keywords: + - antimicrobial + - spike + string_serialization: '{float} {unit};{termLabel} [{termID}]' + slot_uri: MIXS:0001235 + multivalued: true + spikein_antibiotic: + name: spikein_antibiotic + annotations: + Expected_value: + tag: Expected_value + value: drug name; concentration + description: Antimicrobials used in research study to assess effects of exposure + on microbiome of a specific site. Please list antimicrobial, common name and/or + class and concentration used for spike-in + title: spike-in with antibiotics + examples: + - value: Tetracycline at 5 mg/ml + from_schema: https://w3id.org/mixs + keywords: + - spike + string_serialization: '{text} {integer}' + slot_uri: MIXS:0001171 + multivalued: true + spikein_count: + name: spikein_count + annotations: + Expected_value: + tag: Expected_value + value: organism name;measurement value;enumeration + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight + description: 'Total cell count of any organism (or group of organisms) per gram, + volume or area of sample, should include name of organism followed by count. + The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should + also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR)' + title: spike-in organism count + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + from_schema: https://w3id.org/mixs + keywords: + - count + - organism + - spike + string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]' + slot_uri: MIXS:0001335 + spikein_growth_med: + name: spikein_growth_med + description: A liquid or gel containing nutrients, salts, and other factors formulated + to support the growth of microorganisms, cells, or plants (National Cancer Institute + Thesaurus). A growth medium is a culture medium which has the disposition to + encourage growth of particular bacteria to the exclusion of others in the same + growth environment. In this case, list the culture medium used to propagate + the spike-in bacteria during preparation of spike-in inoculum. This field accepts + terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). + If the proper descriptor is not listed please use text to describe the spike + in growth media + title: spike-in growth medium + examples: + - value: LB broth [MCO:0000036] + from_schema: https://w3id.org/mixs + keywords: + - growth + - spike + slot_uri: MIXS:0001169 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + spikein_metal: + name: spikein_metal + annotations: + Expected_value: + tag: Expected_value + value: heavy metal name or chemical symbol; concentration + description: Heavy metals used in research study to assess effects of exposure + on microbiome of a specific site. Please list heavy metals and concentration + used for spike-in + title: spike-in with heavy metals + examples: + - value: Cd at 20 ppm + from_schema: https://w3id.org/mixs + keywords: + - heavy + - spike + string_serialization: '{text} {integer}' + slot_uri: MIXS:0001172 + multivalued: true + spikein_org: + name: spikein_org + description: Taxonomic information about the spike-in organism(s). This field + accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This + field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + Multiple terms can be separated by pipes + title: spike in organism + examples: + - value: Listeria monocytogenes [NCIT:C86502]|28901 + from_schema: https://w3id.org/mixs + keywords: + - organism + - spike + slot_uri: MIXS:0001167 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + spikein_serovar: + name: spikein_serovar + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C14250 or antigenic formula or serovar name + description: Taxonomic information about the spike-in organism(s) at the serovar + or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + Multiple terms can be separated by pipes + title: spike-in bacterial serovar or serotype + examples: + - value: Escherichia coli strain O157:H7 [NCIT:C86883]|83334 + from_schema: https://w3id.org/mixs + keywords: + - spike + string_serialization: '{termLabel} [{termID}]|{integer}' + slot_uri: MIXS:0001168 + multivalued: true + spikein_strain: + name: spikein_strain + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C14250 or NCBI taxid or text + description: Taxonomic information about the spike-in organism(s) at the strain + level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + Multiple terms can be separated by pipes + title: spike-in microbial strain + examples: + - value: '169963' + from_schema: https://w3id.org/mixs + keywords: + - microbial + - spike + string_serialization: '{termLabel} [{termID}]|{integer}' + slot_uri: MIXS:0001170 + multivalued: true + sr_dep_env: + name: sr_dep_env + description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). + If "other" is specified, please propose entry in "additional info" field + title: source rock depositional environment + examples: + - value: Marine + from_schema: https://w3id.org/mixs + keywords: + - environment + - source + slot_uri: MIXS:0000996 + range: SrDepEnvEnum + sr_geol_age: + name: sr_geol_age + description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). + If "other" is specified, please propose entry in "additional info" field' + title: source rock geological age + examples: + - value: Silurian + from_schema: https://w3id.org/mixs + keywords: + - age + - source + slot_uri: MIXS:0000997 + range: GeolAgeEnum + sr_kerog_type: + name: sr_kerog_type + description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic + and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ + fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris + (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). + If "other" is specified, please propose entry in "additional info" field' + title: source rock kerogen type + examples: + - value: Type IV + from_schema: https://w3id.org/mixs + keywords: + - source + - type + slot_uri: MIXS:0000994 + range: SrKerogTypeEnum + sr_lithology: + name: sr_lithology + description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). + If "other" is specified, please propose entry in "additional info" field + title: source rock lithology + examples: + - value: Coal + from_schema: https://w3id.org/mixs + keywords: + - lithology + - source + slot_uri: MIXS:0000995 + range: SrLithologyEnum + standing_water_regm: + name: standing_water_regm + description: Treatment involving an exposure to standing water during a plant's + life span, types can be flood water or standing water, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, and + the start and end time of the entire treatment; can include multiple regimens + title: standing water regimen + examples: + - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + - water + slot_uri: MIXS:0001069 + range: string + multivalued: true + ster_meth_samp_room: + name: ster_meth_samp_room + annotations: + Expected_value: + tag: Expected_value + value: ENVO:01001026 + description: The method used to sterilize the sampling room. This field accepts + terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026). + If the proper descriptor is not listed, please use text to describe the sampling + room sterilization method. Multiple terms can be separated by pipes + title: sampling room sterilization method + examples: + - value: ultraviolet radiation [ENVO:21001216]|infrared radiation [ENVO:21001214] + from_schema: https://w3id.org/mixs + keywords: + - method + - room + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001259 + multivalued: true + store_cond: + name: store_cond + annotations: + Expected_value: + tag: Expected_value + value: storage condition type;duration + description: Explain how and for how long the soil sample was stored before DNA + extraction (fresh/frozen/other) + title: storage conditions + examples: + - value: -20 degree Celsius freezer;P2Y10D + from_schema: https://w3id.org/mixs + keywords: + - condition + - storage + string_serialization: '{text};{period}' + slot_uri: MIXS:0000327 + study_complt_stat: + name: study_complt_stat + annotations: + Expected_value: + tag: Expected_value + value: YES or NO due to (1)adverse event (2) non-compliance (3) lost to follow + up (4)other-specify + description: Specification of study completion status, if no the reason should + be specified + title: study completion status + examples: + - value: no;non-compliance + from_schema: https://w3id.org/mixs + keywords: + - status + string_serialization: '{boolean};[adverse event|non-compliance|lost to follow + up|other-specify]' + slot_uri: MIXS:0000898 + study_design: + name: study_design + annotations: + Expected_value: + tag: Expected_value + value: OBI:0500000 + description: A plan specification comprised of protocols (which may specify how + and what kinds of data will be gathered) that are executed as part of an investigation + and is realized during a study design execution. This field accepts terms under + study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor + is not listed please use text to describe the study design. Multiple terms can + be separated by pipes + title: study design + examples: + - value: in vitro design [OBI:0001285] + from_schema: https://w3id.org/mixs + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001236 + multivalued: true + study_inc_dur: + name: study_inc_dur + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: Sample incubation duration if unpublished or unvalidated method is + used. Indicate the timepoint written in ISO 8601 format + title: study incubation duration + examples: + - value: PT24H + from_schema: https://w3id.org/mixs + keywords: + - duration + - incubation + - period + slot_uri: MIXS:0001237 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + study_inc_temp: + name: study_inc_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Sample incubation temperature if unpublished or unvalidated method + is used + title: study incubation temperature + examples: + - value: 37 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - incubation + - temperature + slot_uri: MIXS:0001238 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + study_timecourse: + name: study_timecourse + annotations: + Preferred_unit: + tag: Preferred_unit + value: dpi + description: For time-course research studies involving samples of the food commodity, + indicate the total duration of the time-course study + title: time-course duration + examples: + - value: 2 days post inoculation + from_schema: https://w3id.org/mixs + keywords: + - duration + - period + - time + slot_uri: MIXS:0001239 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + study_tmnt: + name: study_tmnt + annotations: + Expected_value: + tag: Expected_value + value: MCO:0000866 + description: A process in which the act is intended to modify or alter some other + material entity. From the study design, each treatment is comprised of one + level of one or multiple factors. This field accepts terms listed under treatment + (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not + listed please use text to describe the study treatment. Multiple terms can be + separated by one or more pipes + title: study treatment + examples: + - value: Factor A|spike-in|levels high, medium, low + from_schema: https://w3id.org/mixs + keywords: + - treatment + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001240 + multivalued: true + subspecf_gen_lin: + name: subspecf_gen_lin + annotations: + Expected_value: + tag: Expected_value + value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, + e.g. serovar, biotype, ecotype, variety, cultivar + description: Information about the genetic distinctness of the sequenced organism + below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any + relevant genetic typing schemes like Group I plasmid. Subspecies should not + be recorded in this term, but in the NCBI taxonomy. Supply both the lineage + name and the lineage rank separated by a colon, e.g., biovar:abc123 + title: subspecific genetic lineage + examples: + - value: serovar:Newport + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - lineage + string_serialization: '{rank name}:{text}' + slot_uri: MIXS:0000020 + substructure_type: + name: substructure_type + description: The substructure or under building is that largely hidden section + of the building which is built off the foundations to the ground floor level + title: substructure type + examples: + - value: basement + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000767 + range: SubstructureTypeEnum + multivalued: true + sulfate: + name: sulfate + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of sulfate in the sample + title: sulfate + examples: + - value: 5 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - sulfate + slot_uri: MIXS:0000423 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sulfate_fw: + name: sulfate_fw + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Original sulfate concentration in the hydrocarbon resource + title: sulfate in formation water + from_schema: https://w3id.org/mixs + keywords: + - sulfate + - water + slot_uri: MIXS:0000407 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sulfide: + name: sulfide + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of sulfide in the sample + title: sulfide + examples: + - value: 2 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - sulfide + slot_uri: MIXS:0000424 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + surf_air_cont: + name: surf_air_cont + description: Contaminant identified on surface + title: surface-air contaminant + examples: + - value: radon + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000759 + range: SurfAirContEnum + recommended: true + multivalued: true + surf_humidity: + name: surf_humidity + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: 'Surfaces: water activity as a function of air and material moisture' + title: surface humidity + comments: + - percent or float? + examples: + - value: '0.1' + from_schema: https://w3id.org/mixs + keywords: + - humidity + - surface + slot_uri: MIXS:0000123 + range: float + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + surf_material: + name: surf_material + description: Surface materials at the point of sampling + title: surface material + examples: + - value: wood + from_schema: https://w3id.org/mixs + keywords: + - material + - surface + slot_uri: MIXS:0000758 + range: SurfMaterialEnum + surf_moisture: + name: surf_moisture + annotations: + Preferred_unit: + tag: Preferred_unit + value: parts per million, gram per cubic meter, gram per square meter + description: Water held on a surface + title: surface moisture + examples: + - value: 0.01 gram per square meter + from_schema: https://w3id.org/mixs + keywords: + - moisture + - surface + slot_uri: MIXS:0000128 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + surf_moisture_ph: + name: surf_moisture_ph + description: ph measurement of surface + title: surface moisture pH + examples: + - value: '7' + from_schema: https://w3id.org/mixs + keywords: + - moisture + - ph + - surface + slot_uri: MIXS:0000760 + range: float + recommended: true + surf_temp: + name: surf_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of the surface at the time of sampling + title: surface temperature + examples: + - value: 15 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - surface + - temperature + slot_uri: MIXS:0000125 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + suspend_part_matter: + name: suspend_part_matter + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Concentration of suspended particulate matter + title: suspended particulate matter + examples: + - value: 0.5 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - particle + - particulate + - suspended + slot_uri: MIXS:0000741 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + suspend_solids: + name: suspend_solids + annotations: + Expected_value: + tag: Expected_value + value: suspended solid name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, milligram per liter, mole per liter, gram per liter, + part per million + description: Concentration of substances including a wide variety of material, + such as silt, decaying plant and animal matter; can include multiple substances + title: suspended solids + from_schema: https://w3id.org/mixs + keywords: + - solids + - suspended + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000150 + multivalued: true + sym_life_cycle_type: + name: sym_life_cycle_type + annotations: + Expected_value: + tag: Expected_value + value: type of life cycle of the symbiotic organism (host of the samples) + description: Type of life cycle of the symbiotic host species (the thing being + sampled). Simple life cycles occur within a single host, complex ones within + multiple different hosts over the course of their normal life cycle + title: symbiotic host organism life cycle type + examples: + - value: complex life cycle + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - life + - organism + - symbiosis + - type + slot_uri: MIXS:0001300 + range: SymLifeCycleTypeEnum + required: true + symbiont_host_role: + name: symbiont_host_role + description: Role of the host in the life cycle of the symbiotic organism + title: host of the symbiont role + examples: + - value: intermediate + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001303 + range: SymbiontHostRoleEnum + recommended: true + tan: + name: tan + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: 'Total Acid Number (TAN) is a measurement of acidity that is determined + by the amount of potassium hydroxide in milligrams that is needed to neutralize + the acids in one gram of oil. It is an important quality measurement of crude + oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)' + title: total acid number + from_schema: https://w3id.org/mixs + keywords: + - number + - total + slot_uri: MIXS:0000120 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + target_gene: + name: target_gene + description: Targeted gene or locus name for marker gene studies + title: target gene + examples: + - value: 16S rRNA, 18S rRNA, nif, amoA, rpo + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - target + slot_uri: MIXS:0000044 + range: string + target_subfragment: + name: target_subfragment + description: Name of subfragment of a gene or locus. Important to e.g. identify + special regions on marker genes like V6 on 16S rRNA + title: target subfragment + examples: + - value: V6, V9, ITS + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - target + slot_uri: MIXS:0000045 + range: string + tax_class: + name: tax_class + description: Method used for taxonomic classification, along with reference database + used, classification rank, and thresholds used to classify new genomes + title: taxonomic classification + examples: + - value: vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, + default parameters) + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - classification + - taxon + slot_uri: MIXS:0000064 + range: string + tax_ident: + name: tax_ident + description: The phylogenetic marker(s) used to assign an organism name to the + SAG or MAG + title: taxonomic identity marker + examples: + - value: other + description: was other rpoB gene + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - identifier + - marker + - taxon + slot_uri: MIXS:0000053 + range: TaxIdentEnum + temp: + name: temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of the sample at the time of sampling + title: temperature + examples: + - value: 25 degree Celsius + in_subset: + - environment + from_schema: https://w3id.org/mixs + keywords: + - temperature + slot_uri: MIXS:0000113 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + temp_out: + name: temp_out + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The recorded temperature value at sampling time outside + title: temperature outside house + examples: + - value: 5 degree Celsius + from_schema: https://w3id.org/mixs + keywords: + - house + - temperature + slot_uri: MIXS:0000197 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tertiary_treatment: + name: tertiary_treatment + annotations: + Expected_value: + tag: Expected_value + value: tertiary treatment type + description: The process providing a final treatment stage to raise the effluent + quality before it is discharged to the receiving environment + title: tertiary treatment + from_schema: https://w3id.org/mixs + keywords: + - treatment + slot_uri: MIXS:0000352 + range: string + tidal_stage: + name: tidal_stage + description: Stage of tide + title: tidal stage + examples: + - value: high tide + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000750 + range: TidalStageEnum + tillage: + name: tillage + description: Note method(s) used for tilling + title: history/tillage + examples: + - value: chisel + from_schema: https://w3id.org/mixs + keywords: + - history + slot_uri: MIXS:0001081 + range: TillageEnum + multivalued: true + time_last_toothbrush: + name: time_last_toothbrush + description: Specification of the time since last toothbrushing + title: time since last toothbrushing + comments: + - P2H45M does not match ^P(?!$)(\\d+Y)?(\\d+M)?(\\d+W)?(\\d+D)?(T(?=\\d+[HMS])(\\d+H)?(\\d+M)?(\\d+S)?)?$ + - problematic ISO 8601 period validation + examples: + - value: PT2H45M + from_schema: https://w3id.org/mixs + keywords: + - time + slot_uri: MIXS:0000924 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + time_since_last_wash: + name: time_since_last_wash + description: Specification of the time since last wash + title: time since last wash + examples: + - value: P1D + from_schema: https://w3id.org/mixs + keywords: + - time + slot_uri: MIXS:0000943 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + timepoint: + name: timepoint + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: Time point at which a sample or observation is made or taken from + a biomaterial as measured from some reference point. Indicate the timepoint + written in ISO 8601 format + title: timepoint + examples: + - value: PT24H + from_schema: https://w3id.org/mixs + keywords: + - time + slot_uri: MIXS:0001173 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + tiss_cult_growth_med: + name: tiss_cult_growth_med + description: Description of plant tissue culture growth media used + title: tissue culture growth media + examples: + - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf + from_schema: https://w3id.org/mixs + keywords: + - culture + - growth + slot_uri: MIXS:0001070 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + toluene: + name: toluene + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of toluene in the sample + title: toluene + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000154 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_carb: + name: tot_carb + description: Total carbon content + title: total carbon + from_schema: https://w3id.org/mixs + keywords: + - carbon + - total + slot_uri: MIXS:0000525 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_depth_water_col: + name: tot_depth_water_col + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Measurement of total depth of water column + title: total depth of water column + examples: + - value: 500 meter + from_schema: https://w3id.org/mixs + keywords: + - depth + - total + - water + slot_uri: MIXS:0000634 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_diss_nitro: + name: tot_diss_nitro + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter + description: 'Total dissolved nitrogen concentration, reported as nitrogen, measured + by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen' + title: total dissolved nitrogen + examples: + - value: 40 microgram per liter + from_schema: https://w3id.org/mixs + keywords: + - dissolved + - nitrogen + - total + slot_uri: MIXS:0000744 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_inorg_nitro: + name: tot_inorg_nitro + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter + description: Total inorganic nitrogen content + title: total inorganic nitrogen + examples: + - value: 40 microgram per liter + from_schema: https://w3id.org/mixs + keywords: + - inorganic + - nitrogen + - total + slot_uri: MIXS:0000745 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_iron: + name: tot_iron + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, milligram per kilogram + description: Concentration of total iron in the sample + title: total iron + from_schema: https://w3id.org/mixs + keywords: + - total + slot_uri: MIXS:0000105 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_nitro: + name: tot_nitro + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter, milligram per liter + description: 'Total nitrogen concentration of water samples, calculated by: total + nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured + without filtering, reported as nitrogen' + title: total nitrogen concentration + examples: + - value: 50 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - concentration + - nitrogen + - total + slot_uri: MIXS:0000102 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_nitro_cont_meth: + name: tot_nitro_cont_meth + description: Reference or method used in determining the total nitrogen + title: total nitrogen content method + examples: + - value: https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/0471142913.fab0102s00 + from_schema: https://w3id.org/mixs + keywords: + - content + - method + - nitrogen + - total + slot_uri: MIXS:0000338 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + tot_nitro_content: + name: tot_nitro_content + description: Total nitrogen content of the sample + title: total nitrogen content + examples: + - value: 35 milligrams Nitrogen per kilogram of soil + from_schema: https://w3id.org/mixs + keywords: + - content + - nitrogen + - total + slot_uri: MIXS:0000530 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_org_c_meth: + name: tot_org_c_meth + description: Reference or method used in determining total organic carbon + title: total organic carbon method + examples: + - value: https://www.epa.gov/sites/production/files/2015-12/documents/9060a.pdf + from_schema: https://w3id.org/mixs + keywords: + - carbon + - method + - organic + - total + slot_uri: MIXS:0000337 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + tot_org_carb: + name: tot_org_carb + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram Carbon per kilogram sample material + description: Total organic carbon content + title: total organic carbon + examples: + - value: '0.02' + from_schema: https://w3id.org/mixs + keywords: + - carbon + - organic + - total + slot_uri: MIXS:0000533 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_part_carb: + name: tot_part_carb + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Total particulate carbon content + title: total particulate carbon + examples: + - value: 35 micromole per liter + from_schema: https://w3id.org/mixs + keywords: + - carbon + - particle + - particulate + - total + slot_uri: MIXS:0000747 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_phosp: + name: tot_phosp + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: 'Total phosphorus concentration in the sample, calculated by: total + phosphorus = total dissolved phosphorus + particulate phosphorus' + title: total phosphorus + examples: + - value: 0.03 milligram per liter + from_schema: https://w3id.org/mixs + keywords: + - phosphorus + - total + slot_uri: MIXS:0000117 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_phosphate: + name: tot_phosphate + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Total amount or concentration of phosphate + title: total phosphate + from_schema: https://w3id.org/mixs + keywords: + - phosphate + - total + slot_uri: MIXS:0000689 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_sulfur: + name: tot_sulfur + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of total sulfur in the sample + title: total sulfur + from_schema: https://w3id.org/mixs + keywords: + - sulfur + - total + slot_uri: MIXS:0000419 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + train_line: + name: train_line + description: The subway line name + title: train line + examples: + - value: red + from_schema: https://w3id.org/mixs + keywords: + - train + slot_uri: MIXS:0000837 + range: TrainLineEnum + train_stat_loc: + name: train_stat_loc + description: The train station collection location + title: train station collection location + examples: + - value: forest hills + from_schema: https://w3id.org/mixs + keywords: + - location + - train + slot_uri: MIXS:0000838 + range: TrainStatLocEnum + train_stop_loc: + name: train_stop_loc + description: The train stop collection location + title: train stop collection location + examples: + - value: end + from_schema: https://w3id.org/mixs + keywords: + - location + - stop + - train + slot_uri: MIXS:0000839 + range: TrainStopLocEnum + travel_out_six_month: + name: travel_out_six_month + annotations: + Expected_value: + tag: Expected_value + value: country name + description: Specification of the countries travelled in the last six months; + can include multiple travels + title: travel outside the country in last six months + from_schema: https://w3id.org/mixs + keywords: + - months + slot_uri: MIXS:0000268 + range: string + multivalued: true + trna_ext_software: + name: trna_ext_software + description: Tools used for tRNA identification + title: tRNA extraction software + examples: + - value: infernal;v2;default parameters + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - software + slot_uri: MIXS:0000068 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + trnas: + name: trnas + annotations: + Expected_value: + tag: Expected_value + value: value from 0-21 + description: The total number of tRNAs identified from the SAG or MAG + title: number of standard tRNAs extracted + examples: + - value: '18' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - number + string_serialization: '{integer}' + slot_uri: MIXS:0000067 + trophic_level: + name: trophic_level + description: Trophic levels are the feeding position in a food chain. Microbes + can be a range of producers (e.g. chemolithotroph) + title: trophic level + examples: + - value: heterotroph + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - level + slot_uri: MIXS:0000032 + range: TrophicLevelEnum + turbidity: + name: turbidity + description: Measure of the amount of cloudiness or haziness in water caused by + individual particles + title: turbidity + examples: + - value: 0.3 nephelometric turbidity units + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000191 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tvdss_of_hcr_press: + name: tvdss_of_hcr_press + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where + the original pressure was measured (e.g. 1578 m) + title: depth (TVDSS) of hydrocarbon resource pressure + from_schema: https://w3id.org/mixs + keywords: + - depth + - hydrocarbon + - pressure + - resource + slot_uri: MIXS:0000397 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tvdss_of_hcr_temp: + name: tvdss_of_hcr_temp + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where + the original temperature was measured (e.g. 1345 m) + title: depth (TVDSS) of hydrocarbon resource temperature + from_schema: https://w3id.org/mixs + keywords: + - depth + - hydrocarbon + - resource + - temperature + slot_uri: MIXS:0000394 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + twin_sibling: + name: twin_sibling + description: Specification of twin sibling presence + title: twin sibling presence + examples: + - value: 'yes' + from_schema: https://w3id.org/mixs + keywords: + - presence + slot_uri: MIXS:0000326 + range: boolean + typ_occup_density: + name: typ_occup_density + description: Customary or normal density of occupants + title: typical occupant density + examples: + - value: '25' + from_schema: https://w3id.org/mixs + keywords: + - density + slot_uri: MIXS:0000771 + range: float + required: true + type_of_symbiosis: + name: type_of_symbiosis + description: Type of biological interaction established between the symbiotic + host organism being sampled and its respective host + title: type of symbiosis + examples: + - value: parasitic + from_schema: https://w3id.org/mixs + keywords: + - symbiosis + - type + slot_uri: MIXS:0001307 + range: TypeOfSymbiosisEnum + recommended: true + urine_collect_meth: + name: urine_collect_meth + description: Specification of urine collection method + title: urine/collection method + examples: + - value: catheter + from_schema: https://w3id.org/mixs + keywords: + - method + slot_uri: MIXS:0000899 + range: UrineCollectMethEnum + urobiom_sex: + name: urobiom_sex + annotations: + Expected_value: + tag: Expected_value + value: sex of the symbiotic organism (host of the samples); enumeration + description: Physical sex of the host + title: host sex + from_schema: https://w3id.org/mixs + keywords: + - host + - host. + slot_uri: MIXS:0000862 + range: UrobiomSexEnum + urogenit_disord: + name: urogenit_disord + description: History of urogenital disorders, can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary + system disease (https://disease-ontology.org/?id=DOID:18) + title: urogenital disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000289 + range: string + multivalued: true + urogenit_tract_disor: + name: urogenit_tract_disor + description: History of urogenital tract disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + urinary system disease (https://disease-ontology.org/?id=DOID:18) + title: urine/urogenital tract disorder + from_schema: https://w3id.org/mixs + keywords: + - disorder + slot_uri: MIXS:0000278 + range: string + multivalued: true + ventilation_rate: + name: ventilation_rate + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per minute, liters per second + description: Ventilation rate of the system in the sampled premises + title: ventilation rate + examples: + - value: 750 cubic meter per minute + from_schema: https://w3id.org/mixs + keywords: + - rate + slot_uri: MIXS:0000114 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ventilation_type: + name: ventilation_type + annotations: + Expected_value: + tag: Expected_value + value: ventilation type name + description: Ventilation system used in the sampled premises + title: ventilation type + examples: + - value: Operable windows + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000756 + range: string + multivalued: true + vfa: + name: vfa + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of Volatile Fatty Acids in the sample + title: volatile fatty acids + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000152 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + vfa_fw: + name: vfa_fw + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Original volatile fatty acid concentration in the hydrocarbon resource + title: vfa in formation water + from_schema: https://w3id.org/mixs + keywords: + - water + slot_uri: MIXS:0000408 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + vir_ident_software: + name: vir_ident_software + annotations: + Expected_value: + tag: Expected_value + value: software name, version and relevant parameters + description: Tool(s) used for the identification of UViG as a viral genome, software + or protocol name including version number, parameters, and cutoffs used + title: viral identification software + examples: + - value: VirSorter; 1.0.4; Virome database, category 2 + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - identifier + - software + string_serialization: '{software};{version};{parameters}' + slot_uri: MIXS:0000081 + virus_enrich_appr: + name: virus_enrich_appr + description: List of approaches used to enrich the sample for viruses, if any + title: virus enrichment approach + examples: + - value: filtration + description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + - value: FeCl Precipitation + description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + - value: ultracentrifugation + description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + - value: DNAse + description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse + in_subset: + - nucleic acid sequence source + from_schema: https://w3id.org/mixs + keywords: + - enrichment + slot_uri: MIXS:0000036 + range: VirusEnrichApprEnum + vis_media: + name: vis_media + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The building visual media + title: visual media + examples: + - value: 3D scans + from_schema: https://w3id.org/mixs + string_serialization: '[photos|videos|commonly of the building|site context (adjacent + buildings, vegetation, terrain, streets)|interiors|equipment|3D scans]' + slot_uri: MIXS:0000840 + viscosity: + name: viscosity + annotations: + Expected_value: + tag: Expected_value + value: measurement value;measurement value + Preferred_unit: + tag: Preferred_unit + value: cP at degree Celsius + description: A measure of oil's resistance to gradual deformation by shear stress or tensile + stress (e.g. 3.5 cp; 100 C) + title: viscosity + from_schema: https://w3id.org/mixs + string_serialization: '{float} {unit};{float} {unit}' + slot_uri: MIXS:0000126 + volatile_org_comp: + name: volatile_org_comp + annotations: + Expected_value: + tag: Expected_value + value: volatile organic compound name;measurement value + Preferred_unit: + tag: Preferred_unit + value: microgram per cubic meter, parts per million, nanogram per liter + description: Concentration of carbon-based chemicals that easily evaporate at + room temperature; can report multiple volatile organic compounds by entering + numeric values preceded by name of compound + title: volatile organic compounds + examples: + - value: formaldehyde;500 nanogram per liter + from_schema: https://w3id.org/mixs + keywords: + - organic + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000115 + multivalued: true + wall_area: + name: wall_area + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The total area of the sampled room's walls + title: wall area + from_schema: https://w3id.org/mixs + keywords: + - area + - wall + slot_uri: MIXS:0000198 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + wall_const_type: + name: wall_const_type + description: The building class of the wall defined by the composition of the + building elements and fire-resistance rating + title: wall construction type + examples: + - value: fire resistive + from_schema: https://w3id.org/mixs + keywords: + - type + - wall + slot_uri: MIXS:0000841 + range: WallConstTypeEnum + wall_finish_mat: + name: wall_finish_mat + description: The material utilized to finish the outer most layer of the wall + title: wall finish material + examples: + - value: wood + from_schema: https://w3id.org/mixs + keywords: + - material + - wall + slot_uri: MIXS:0000842 + range: WallFinishMatEnum + wall_height: + name: wall_height + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter + description: The average height of the walls in the sampled room + title: wall height + from_schema: https://w3id.org/mixs + keywords: + - height + - wall + slot_uri: MIXS:0000221 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + wall_loc: + name: wall_loc + description: The relative location of the wall within the room + title: wall location + examples: + - value: north + from_schema: https://w3id.org/mixs + keywords: + - location + - wall + slot_uri: MIXS:0000843 + range: CompassDirections8Enum + wall_surf_treatment: + name: wall_surf_treatment + description: The surface treatment of interior wall + title: wall surface treatment + examples: + - value: paneling + from_schema: https://w3id.org/mixs + keywords: + - surface + - treatment + - wall + slot_uri: MIXS:0000845 + range: WallSurfTreatmentEnum + wall_texture: + name: wall_texture + description: The feel, appearance, or consistency of a wall surface + title: wall texture + examples: + - value: popcorn + from_schema: https://w3id.org/mixs + keywords: + - texture + - wall + slot_uri: MIXS:0000846 + range: CeilingWallTextureEnum + wall_thermal_mass: + name: wall_thermal_mass + annotations: + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the wall to provide inertia against temperature fluctuations. + Generally this means concrete or concrete block that is either exposed or covered + only with paint + title: wall thermal mass + from_schema: https://w3id.org/mixs + keywords: + - mass + - wall + slot_uri: MIXS:0000222 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + wall_water_mold: + name: wall_water_mold + description: Signs of the presence of mold or mildew on a wall + title: wall signs of water/mold + examples: + - value: no presence of mold visible + from_schema: https://w3id.org/mixs + keywords: + - wall + slot_uri: MIXS:0000844 + range: MoldVisibilityEnum + wastewater_type: + name: wastewater_type + annotations: + Expected_value: + tag: Expected_value + value: wastewater type name + description: The origin of wastewater such as human waste, rainfall, storm drains, + etc + title: wastewater type + from_schema: https://w3id.org/mixs + keywords: + - type + slot_uri: MIXS:0000353 + range: string + water_cont_soil_meth: + name: water_cont_soil_meth + description: Reference or method used in determining the water content of soil + title: water content method + from_schema: https://w3id.org/mixs + keywords: + - content + - method + - water + slot_uri: MIXS:0000323 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + water_content: + name: water_content + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram per gram or cubic centimeter per cubic centimeter + description: Water content measurement + title: water content + from_schema: https://w3id.org/mixs + keywords: + - content + - water + slot_uri: MIXS:0000185 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_current: + name: water_current + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per second, knots + description: Measurement of magnitude and direction of flow within a fluid + title: water current + examples: + - value: 10 cubic meter per second + from_schema: https://w3id.org/mixs + keywords: + - water + slot_uri: MIXS:0000203 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_cut: + name: water_cut + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: Current amount of water (%) in a produced fluid stream; or the average + of the combined streams + title: water cut + comments: + - percent or float? + examples: + - value: 45% + from_schema: https://w3id.org/mixs + keywords: + - water + slot_uri: MIXS:0000454 + range: string + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_feat_size: + name: water_feat_size + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The size of the water feature + title: water feature size + from_schema: https://w3id.org/mixs + keywords: + - feature + - size + - water + slot_uri: MIXS:0000223 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_feat_type: + name: water_feat_type + description: The type of water feature present within the building being sampled + title: water feature type + examples: + - value: stream + from_schema: https://w3id.org/mixs + keywords: + - feature + - type + - water + slot_uri: MIXS:0000847 + range: WaterFeatTypeEnum + water_frequency: + name: water_frequency + annotations: + Expected_value: + tag: Expected_value + value: rate + Preferred_unit: + tag: Preferred_unit + value: per day, per week, per month + description: Number of water delivery events within a given period of time + title: water delivery frequency + examples: + - value: 2 per day + from_schema: https://w3id.org/mixs + keywords: + - delivery + - frequency + - water + string_serialization: '{float}{unit}' + slot_uri: MIXS:0001174 + water_pH: + name: water_pH + title: water pH + examples: + - value: '7.2' + from_schema: https://w3id.org/mixs + keywords: + - ph + - water + slot_uri: MIXS:0001175 + range: float + water_prod_rate: + name: water_prod_rate + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per day + description: Water production rates per well (e.g. 987 m3 / day) + title: water production rate + from_schema: https://w3id.org/mixs + keywords: + - production + - rate + - water + slot_uri: MIXS:0000453 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_source_adjac: + name: water_source_adjac + annotations: + Expected_value: + tag: Expected_value + value: ENVO_01001110 or ENVO_00000070 + description: Description of the environmental features that are adjacent to the + farm water source. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) + and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple + terms can be separated by pipes + title: environmental feature adjacent water source + examples: + - value: feedlot [ENVO:01000627] + from_schema: https://w3id.org/mixs + keywords: + - adjacent + - environmental + - feature + - source + - water + slot_uri: MIXS:0001122 + range: string + multivalued: true + water_source_shared: + name: water_source_shared + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Other users sharing access to the same water source. Multiple terms + can be separated by one or more pipes + title: water source shared + examples: + - value: no sharing + from_schema: https://w3id.org/mixs + keywords: + - source + - water + string_serialization: '[multiple users, agricutural|multiple users, other|no sharing]' + slot_uri: MIXS:0001176 + multivalued: true + water_temp_regm: + name: water_temp_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Information about treatment involving an exposure to water with varying + degree of temperature, treatment regimen including how many times the treatment + was repeated, how long each treatment lasted, and the start and end time of + the entire treatment; can include multiple regimens + title: water temperature regimen + examples: + - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + - temperature + - water + slot_uri: MIXS:0000590 + range: string + multivalued: true + watering_regm: + name: watering_regm + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliliter, liter + description: Information about treatment involving an exposure to watering frequencies, + treatment regimen including how many times the treatment was repeated, how long + each treatment lasted, and the start and end time of the entire treatment; can + include multiple regimens + title: watering regimen + examples: + - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + from_schema: https://w3id.org/mixs + keywords: + - regimen + - water + slot_uri: MIXS:0000591 + range: string + multivalued: true + weekday: + name: weekday + description: The day of the week when sampling occurred + title: weekday + examples: + - value: Sunday + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000848 + range: WeekdayEnum + weight_loss_3_month: + name: weight_loss_3_month + annotations: + Expected_value: + tag: Expected_value + value: weight loss specification;measurement value + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Specification of weight loss in the last three months, if yes should + be further specified to include amount of weight loss + title: weight loss in last three months + examples: + - value: yes;5 kilogram + from_schema: https://w3id.org/mixs + keywords: + - months + - weight + string_serialization: '{boolean};{float} {unit}' + slot_uri: MIXS:0000295 + wga_amp_appr: + name: wga_amp_appr + description: Method used to amplify genomic DNA in preparation for sequencing + title: WGA amplification approach + examples: + - value: mda based + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000055 + range: WgaAmpApprEnum + wga_amp_kit: + name: wga_amp_kit + annotations: + Expected_value: + tag: Expected_value + value: kit name + description: Kit used to amplify genomic DNA in preparation for sequencing + title: WGA amplification kit + examples: + - value: qiagen repli-g + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - kit + slot_uri: MIXS:0000006 + range: string + win: + name: win + description: 'A unique identifier of a well or wellbore. This is part of the Global + Framework for Well Identification initiative which is compiled by the Professional + Petroleum Data Management Association (PPDM) in an effort to improve well identification + systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)' + title: well identification number + from_schema: https://w3id.org/mixs + keywords: + - identifier + - number + slot_uri: MIXS:0000297 + range: string + recommended: true + wind_direction: + name: wind_direction + annotations: + Preferred_unit: + tag: Preferred_unit + value: degrees or cardinal direction + description: Wind direction is the direction from which a wind originates + title: wind direction + from_schema: https://w3id.org/mixs + keywords: + - direction + - wind + slot_uri: MIXS:0000757 + range: string + wind_speed: + name: wind_speed + description: speed of wind measured at the time of sampling + title: wind speed + from_schema: https://w3id.org/mixs + keywords: + - speed + - wind + slot_uri: MIXS:0000118 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + window_cond: + name: window_cond + description: The physical condition of the window at the time of sampling + title: window condition + examples: + - value: rupture + from_schema: https://w3id.org/mixs + keywords: + - condition + - window + slot_uri: MIXS:0000849 + range: DamagedRupturedEnum + window_cover: + name: window_cover + description: The type of window covering + title: window covering + examples: + - value: curtains + from_schema: https://w3id.org/mixs + keywords: + - window + slot_uri: MIXS:0000850 + range: WindowCoverEnum + window_horiz_pos: + name: window_horiz_pos + description: The horizontal position of the window on the wall + title: window horizontal position + examples: + - value: middle + from_schema: https://w3id.org/mixs + keywords: + - window + slot_uri: MIXS:0000851 + range: WindowHorizPosEnum + window_loc: + name: window_loc + description: The relative location of the window within the room + title: window location + examples: + - value: west + from_schema: https://w3id.org/mixs + keywords: + - location + - window + slot_uri: MIXS:0000852 + range: CompassDirections8Enum + window_mat: + name: window_mat + description: The type of material used to finish a window + title: window material + examples: + - value: wood + from_schema: https://w3id.org/mixs + keywords: + - material + - window + slot_uri: MIXS:0000853 + range: WindowMatEnum + window_open_freq: + name: window_open_freq + description: The number of times windows are opened per week + title: window open frequency + from_schema: https://w3id.org/mixs + keywords: + - frequency + - window + slot_uri: MIXS:0000246 + range: integer + window_size: + name: window_size + annotations: + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: inch, meter + description: The window's length and width + title: window area/size + from_schema: https://w3id.org/mixs + keywords: + - window + string_serialization: '{float} {unit} x {float} {unit}' + slot_uri: MIXS:0000224 + window_status: + name: window_status + description: Defines whether the windows were open or closed during environmental + testing + title: window status + examples: + - value: open + from_schema: https://w3id.org/mixs + keywords: + - status + - window + slot_uri: MIXS:0000855 + range: WindowStatusEnum + window_type: + name: window_type + description: The type of windows + title: window type + examples: + - value: fixed window + from_schema: https://w3id.org/mixs + keywords: + - type + - window + slot_uri: MIXS:0000856 + range: WindowTypeEnum + window_vert_pos: + name: window_vert_pos + description: The vertical position of the window on the wall + title: window vertical position + examples: + - value: middle + from_schema: https://w3id.org/mixs + keywords: + - window + slot_uri: MIXS:0000857 + range: WindowVertPosEnum + window_water_mold: + name: window_water_mold + description: Signs of the presence of mold or mildew on the window + title: window signs of water/mold + examples: + - value: no presence of mold visible + from_schema: https://w3id.org/mixs + keywords: + - window + slot_uri: MIXS:0000854 + range: MoldVisibilityEnum + x16s_recover: + name: x16s_recover + description: Can a 16S gene be recovered from the submitted SAG or MAG? + title: 16S recovered + examples: + - value: 'yes' + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - recover + slot_uri: MIXS:0000065 + range: boolean + x16s_recover_software: + name: x16s_recover_software + description: Tools used for 16S rRNA gene extraction + title: 16S recovery software + examples: + - value: rambl;v2;default parameters + in_subset: + - sequencing + from_schema: https://w3id.org/mixs + keywords: + - recover + - software + slot_uri: MIXS:0000066 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + xylene: + name: xylene + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of xylene in the sample + title: xylene + from_schema: https://w3id.org/mixs + slot_uri: MIXS:0000156 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true +classes: + MigsBa: + name: MigsBa + description: 'Minimal Information about a Genome Sequence: cultured bacteria/archaea' + title: MIGS bacteria + from_schema: https://w3id.org/mixs + aliases: + - migs_ba + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - extrachrom_elements + - estimated_size + - samp_vol_we_dna_ext + - pathogenicity + - lib_reads_seqd + - rel_to_oxygen + - encoded_traits + - samp_collect_device + - number_contig + - biotic_relationship + - num_replicons + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - adapters + - assembly_software + - tax_ident + - annot + - trophic_level + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_qual: + name: assembly_qual + required: true + assembly_software: + name: assembly_software + required: true + biotic_relationship: + name: biotic_relationship + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + extrachrom_elements: + name: extrachrom_elements + recommended: true + host_disease_stat: + name: host_disease_stat + examples: + - value: rabies [DOID:11260] + recommended: true + isol_growth_condt: + name: isol_growth_condt + required: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + num_replicons: + name: num_replicons + required: true + number_contig: + name: number_contig + required: true + pathogenicity: + name: pathogenicity + recommended: true + ref_biomaterial: + name: ref_biomaterial + required: true + rel_to_oxygen: + name: rel_to_oxygen + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + specific_host: + name: specific_host + recommended: true + subspecf_gen_lin: + name: subspecf_gen_lin + recommended: true + tax_ident: + name: tax_ident + recommended: true + temp: + name: temp + recommended: true + trophic_level: + name: trophic_level + recommended: true + class_uri: MIXS:0010003 + MigsEu: + name: MigsEu + description: 'Minimal Information about a Genome Sequence: eukaryote' + title: MIGS eukaryote + from_schema: https://w3id.org/mixs + aliases: + - migs_eu + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - estimated_size + - extrachrom_elements + - source_mat_id + - samp_vol_we_dna_ext + - ploidy + - pathogenicity + - lib_reads_seqd + - propagation + - samp_collect_device + - number_contig + - biotic_relationship + - num_replicons + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - adapters + - assembly_software + - tax_ident + - annot + - trophic_level + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_qual: + name: assembly_qual + required: true + assembly_software: + name: assembly_software + required: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + host_disease_stat: + name: host_disease_stat + examples: + - value: rabies [DOID:11260] + isol_growth_condt: + name: isol_growth_condt + required: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + number_contig: + name: number_contig + required: true + pathogenicity: + name: pathogenicity + recommended: true + propagation: + name: propagation + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + subspecf_gen_lin: + name: subspecf_gen_lin + recommended: true + tax_ident: + name: tax_ident + recommended: true + temp: + name: temp + recommended: true + trophic_level: + name: trophic_level + recommended: true + class_uri: MIXS:0010002 + MigsOrg: + name: MigsOrg + description: 'Minimal Information about a Genome Sequence: organelle' + title: MIGS org + from_schema: https://w3id.org/mixs + aliases: + - migs_org + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - extrachrom_elements + - estimated_size + - samp_vol_we_dna_ext + - lib_reads_seqd + - samp_collect_device + - number_contig + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - tax_ident + - annot + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_software: + name: assembly_software + required: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + extrachrom_elements: + name: extrachrom_elements + recommended: true + isol_growth_condt: + name: isol_growth_condt + required: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + subspecf_gen_lin: + name: subspecf_gen_lin + recommended: true + tax_ident: + name: tax_ident + recommended: true + temp: + name: temp + recommended: true + class_uri: MIXS:0010006 + MigsPl: + name: MigsPl + description: 'Minimal Information about a Genome Sequence: plasmid' + title: MIGS pl + from_schema: https://w3id.org/mixs + aliases: + - migs_pl + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - estimated_size + - samp_vol_we_dna_ext + - lib_reads_seqd + - encoded_traits + - propagation + - samp_collect_device + - number_contig + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - adapters + - assembly_software + - tax_ident + - annot + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_software: + name: assembly_software + required: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + encoded_traits: + name: encoded_traits + recommended: true + isol_growth_condt: + name: isol_growth_condt + required: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + propagation: + name: propagation + required: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + specific_host: + name: specific_host + recommended: true + subspecf_gen_lin: + name: subspecf_gen_lin + recommended: true + tax_ident: + name: tax_ident + recommended: true + temp: + name: temp + recommended: true + class_uri: MIXS:0010004 + MigsVi: + name: MigsVi + description: 'Minimal Information about a Genome Sequence: virus' + title: MIGS virus + from_schema: https://w3id.org/mixs + aliases: + - migs_vi + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - estimated_size + - samp_vol_we_dna_ext + - pathogenicity + - lib_reads_seqd + - encoded_traits + - propagation + - samp_collect_device + - number_contig + - biotic_relationship + - num_replicons + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - virus_enrich_appr + - adapters + - assembly_software + - tax_ident + - annot + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_software: + name: assembly_software + required: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + encoded_traits: + name: encoded_traits + recommended: true + host_disease_stat: + name: host_disease_stat + examples: + - value: rabies [DOID:11260] + recommended: true + host_spec_range: + name: host_spec_range + recommended: true + isol_growth_condt: + name: isol_growth_condt + required: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + num_replicons: + name: num_replicons + recommended: true + pathogenicity: + name: pathogenicity + recommended: true + propagation: + name: propagation + required: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + specific_host: + name: specific_host + recommended: true + subspecf_gen_lin: + name: subspecf_gen_lin + recommended: true + tax_ident: + name: tax_ident + recommended: true + temp: + name: temp + recommended: true + virus_enrich_appr: + name: virus_enrich_appr + recommended: true + class_uri: MIXS:0010005 + Mimag: + name: Mimag + description: Minimum Information About a Metagenome-Assembled Genome + title: MIMAG + from_schema: https://w3id.org/mixs + aliases: + - mimag + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - contam_screen_input + - mid + - assembly_name + - temp + - compl_score + - trnas + - mag_cov_software + - nucl_acid_ext + - samp_size + - alt + - bin_param + - bin_software + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - reassembly_bin + - decontam_software + - samp_collect_device + - number_contig + - trna_ext_software + - lib_layout + - contam_screen_param + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - tax_ident + - contam_score + - annot + - x16s_recover_software + - x16s_recover + - pos_cont_type + - feat_pred + - compl_software + - env_local_scale + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - compl_appr + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_qual: + name: assembly_qual + required: true + assembly_software: + name: assembly_software + required: true + bin_param: + name: bin_param + required: true + bin_software: + name: bin_software + required: true + compl_score: + name: compl_score + required: true + compl_software: + name: compl_software + required: true + contam_score: + name: contam_score + required: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + experimental_factor: + name: experimental_factor + recommended: true + lib_layout: + name: lib_layout + recommended: true + lib_reads_seqd: + name: lib_reads_seqd + recommended: true + lib_screen: + name: lib_screen + recommended: true + lib_size: + name: lib_size + recommended: true + lib_vector: + name: lib_vector + recommended: true + mid: + name: mid + recommended: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + recommended: true + samp_mat_process: + name: samp_mat_process + recommended: true + samp_size: + name: samp_size + recommended: true + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + tax_ident: + name: tax_ident + required: true + temp: + name: temp + recommended: true + class_uri: MIXS:0010011 + MimarksC: + name: MimarksC + description: 'Minimal Information about a Marker Sequence: specimen' + title: MIMARKS specimen + comments: + - for marker gene sequences from cultured or voucher-identifiable specimens + from_schema: https://w3id.org/mixs + aliases: + - mimarks_c + - MIMARKS-SU + - MIMARKS-specimen + is_a: Checklist + mixin: true + slots: + - samp_name + - pcr_primers + - nucl_acid_amp + - target_subfragment + - temp + - pcr_cond + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - extrachrom_elements + - samp_vol_we_dna_ext + - rel_to_oxygen + - samp_collect_device + - biotic_relationship + - seq_quality_check + - project_name + - neg_cont_type + - chimera_check + - trophic_level + - pos_cont_type + - subspecf_gen_lin + - env_local_scale + - samp_mat_process + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - experimental_factor + - target_gene + - associated_resource + - sop + slot_usage: + alt: + name: alt + recommended: true + biotic_relationship: + name: biotic_relationship + recommended: true + chimera_check: + name: chimera_check + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + isol_growth_condt: + name: isol_growth_condt + required: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + pcr_cond: + name: pcr_cond + recommended: true + pcr_primers: + name: pcr_primers + recommended: true + rel_to_oxygen: + name: rel_to_oxygen + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + samp_mat_process: + name: samp_mat_process + recommended: true + seq_quality_check: + name: seq_quality_check + recommended: true + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + subspecf_gen_lin: + name: subspecf_gen_lin + recommended: true + target_gene: + name: target_gene + required: true + target_subfragment: + name: target_subfragment + recommended: true + temp: + name: temp + recommended: true + trophic_level: + name: trophic_level + recommended: true + class_uri: MIXS:0010009 + MimarksS: + name: MimarksS + description: 'Minimal Information about a Marker Sequence: survey' + title: MIMARKS survey + comments: + - for marker gene sequences obtained directly from the environment + from_schema: https://w3id.org/mixs + aliases: + - mimarks_s + - MIMARKS-SP + - MIMARKS-survey + is_a: Checklist + mixin: true + slots: + - samp_name + - pcr_primers + - size_frac + - lib_screen + - nucl_acid_amp + - lib_size + - target_subfragment + - mid + - temp + - nucl_acid_ext + - samp_size + - alt + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - samp_collect_device + - seq_quality_check + - lib_layout + - env_broad_scale + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - chimera_check + - pos_cont_type + - env_local_scale + - samp_mat_process + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - pcr_cond + - experimental_factor + - target_gene + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + assembly_software: + name: assembly_software + recommended: true + chimera_check: + name: chimera_check + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + experimental_factor: + name: experimental_factor + recommended: true + lib_layout: + name: lib_layout + recommended: true + lib_reads_seqd: + name: lib_reads_seqd + recommended: true + lib_screen: + name: lib_screen + recommended: true + lib_size: + name: lib_size + recommended: true + lib_vector: + name: lib_vector + recommended: true + mid: + name: mid + recommended: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + pcr_cond: + name: pcr_cond + recommended: true + pcr_primers: + name: pcr_primers + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + recommended: true + samp_mat_process: + name: samp_mat_process + recommended: true + samp_size: + name: samp_size + recommended: true + seq_quality_check: + name: seq_quality_check + recommended: true + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + target_gene: + name: target_gene + required: true + target_subfragment: + name: target_subfragment + recommended: true + temp: + name: temp + recommended: true + class_uri: MIXS:0010008 + Mims: + name: Mims + description: Metagenome or Environmental + title: MIMS + from_schema: https://w3id.org/mixs + aliases: + - mims + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - mid + - assembly_name + - temp + - nucl_acid_ext + - samp_size + - alt + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - samp_collect_device + - number_contig + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - annot + - pos_cont_type + - feat_pred + - env_local_scale + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_qual: + name: assembly_qual + recommended: true + assembly_software: + name: assembly_software + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + experimental_factor: + name: experimental_factor + recommended: true + lib_layout: + name: lib_layout + recommended: true + lib_reads_seqd: + name: lib_reads_seqd + recommended: true + lib_screen: + name: lib_screen + recommended: true + lib_size: + name: lib_size + recommended: true + lib_vector: + name: lib_vector + recommended: true + mid: + name: mid + recommended: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + number_contig: + name: number_contig + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + recommended: true + samp_mat_process: + name: samp_mat_process + recommended: true + samp_size: + name: samp_size + recommended: true + sop: + name: sop + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + temp: + name: temp + recommended: true + class_uri: MIXS:0010007 + Misag: + name: Misag + description: Minimum Information About a Single Amplified Genome + title: Minimum Information About a Single Amplified Genome + from_schema: https://w3id.org/mixs + aliases: + - misag + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - contam_screen_input + - mid + - assembly_name + - temp + - compl_score + - trnas + - nucl_acid_ext + - samp_size + - alt + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - wga_amp_kit + - decontam_software + - samp_collect_device + - number_contig + - trna_ext_software + - sc_lysis_method + - lib_layout + - contam_screen_param + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - tax_ident + - contam_score + - annot + - x16s_recover_software + - x16s_recover + - pos_cont_type + - feat_pred + - compl_software + - env_local_scale + - sort_tech + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - wga_amp_appr + - compl_appr + - env_medium + - samp_taxon_id + - geo_loc_name + - sc_lysis_approach + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_qual: + name: assembly_qual + required: true + assembly_software: + name: assembly_software + required: true + compl_score: + name: compl_score + required: true + compl_software: + name: compl_software + required: true + contam_score: + name: contam_score + required: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + experimental_factor: + name: experimental_factor + recommended: true + lib_layout: + name: lib_layout + recommended: true + lib_reads_seqd: + name: lib_reads_seqd + recommended: true + lib_screen: + name: lib_screen + recommended: true + lib_size: + name: lib_size + recommended: true + lib_vector: + name: lib_vector + recommended: true + mid: + name: mid + recommended: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + recommended: true + samp_mat_process: + name: samp_mat_process + recommended: true + samp_size: + name: samp_size + recommended: true + sc_lysis_approach: + name: sc_lysis_approach + required: true + sop: + name: sop + recommended: true + sort_tech: + name: sort_tech + required: true + source_mat_id: + name: source_mat_id + recommended: true + tax_ident: + name: tax_ident + required: true + temp: + name: temp + recommended: true + wga_amp_appr: + name: wga_amp_appr + required: true + class_uri: MIXS:0010010 + Miuvig: + name: Miuvig + description: Minimum Information About an Uncultivated Virus Genome + title: Minimum Information About an Uncultivated Virus Genome + from_schema: https://w3id.org/mixs + aliases: + - miuvig + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - source_uvig + - ref_db + - nucl_acid_amp + - lib_size + - mid + - assembly_name + - temp + - compl_score + - trnas + - nucl_acid_ext + - samp_size + - alt + - estimated_size + - source_mat_id + - samp_vol_we_dna_ext + - pathogenicity + - lib_reads_seqd + - samp_collect_device + - number_contig + - biotic_relationship + - trna_ext_software + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - virus_enrich_appr + - adapters + - assembly_software + - tax_ident + - annot + - pos_cont_type + - feat_pred + - compl_software + - env_local_scale + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - compl_appr + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - sort_tech + - sc_lysis_approach + - sc_lysis_method + - wga_amp_appr + - wga_amp_kit + - bin_param + - bin_software + - reassembly_bin + - mag_cov_software + - vir_ident_software + - pred_genome_type + - pred_genome_struc + - detec_type + - otu_class_appr + - otu_seq_comp_appr + - otu_db + - host_pred_appr + - host_pred_est_acc + - associated_resource + - sop + slot_usage: + adapters: + name: adapters + recommended: true + alt: + name: alt + recommended: true + assembly_name: + name: assembly_name + recommended: true + assembly_qual: + name: assembly_qual + required: true + assembly_software: + name: assembly_software + required: true + bin_param: + name: bin_param + recommended: true + bin_software: + name: bin_software + recommended: true + compl_appr: + name: compl_appr + recommended: true + compl_score: + name: compl_score + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + detec_type: + name: detec_type + required: true + elev: + name: elev + recommended: true + experimental_factor: + name: experimental_factor + recommended: true + feat_pred: + name: feat_pred + recommended: true + host_disease_stat: + name: host_disease_stat + examples: + - value: rabies [DOID:11260] + recommended: true + host_pred_appr: + name: host_pred_appr + recommended: true + host_pred_est_acc: + name: host_pred_est_acc + recommended: true + lib_layout: + name: lib_layout + recommended: true + lib_reads_seqd: + name: lib_reads_seqd + recommended: true + lib_screen: + name: lib_screen + recommended: true + lib_size: + name: lib_size + recommended: true + lib_vector: + name: lib_vector + recommended: true + mid: + name: mid + recommended: true + nucl_acid_amp: + name: nucl_acid_amp + recommended: true + nucl_acid_ext: + name: nucl_acid_ext + recommended: true + number_contig: + name: number_contig + required: true + otu_class_appr: + name: otu_class_appr + recommended: true + otu_db: + name: otu_db + recommended: true + otu_seq_comp_appr: + name: otu_seq_comp_appr + recommended: true + pred_genome_struc: + name: pred_genome_struc + required: true + pred_genome_type: + name: pred_genome_type + required: true + reassembly_bin: + name: reassembly_bin + recommended: true + ref_db: + name: ref_db + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + name: samp_collect_method + examples: + - value: swabbing + recommended: true + samp_mat_process: + name: samp_mat_process + recommended: true + samp_size: + name: samp_size + recommended: true + sc_lysis_approach: + name: sc_lysis_approach + recommended: true + sc_lysis_method: + name: sc_lysis_method + recommended: true + sim_search_meth: + name: sim_search_meth + recommended: true + size_frac: + name: size_frac + recommended: true + sop: + name: sop + recommended: true + sort_tech: + name: sort_tech + recommended: true + source_mat_id: + name: source_mat_id + recommended: true + source_uvig: + name: source_uvig + required: true + tax_class: + name: tax_class + recommended: true + temp: + name: temp + recommended: true + vir_ident_software: + name: vir_ident_software + required: true + virus_enrich_appr: + name: virus_enrich_appr + required: true + wga_amp_appr: + name: wga_amp_appr + recommended: true + wga_amp_kit: + name: wga_amp_kit + recommended: true + class_uri: MIXS:0010012 + Agriculture: + name: Agriculture + annotations: + use_cases: + tag: use_cases + value: Agricultural Microbiomes Research Coordination Network, model cropping + and plant systems focused on agricultural plant and soil microbe; microbiome + studies in agricultural sites; long-term ecological research in croplands; + eDNA in manure samples; describing agricultural microbiome studies + description: A collection of terms appropriate when sequencing samples obtained + in an agricultural environment. Suitable to capture metadata appropriate to + enhance crop productivity and agroecosystem health with the aim to facilitate + research of agricultural microbiomes and their relationships to plant productivity and + sustainable crop production from diverse crop management contexts. + title: agriculture + from_schema: https://w3id.org/mixs + aliases: + - MIxS-Ag (agriculture) + is_a: Extension + slots: + - plant_growth_med + - photosynt_activ + - photosynt_activ_meth + - samp_collect_method + - enrichment_protocol + - library_prep_kit + - sequencing_location + - soil_temp + - soil_pH + - soil_conductivity + - rel_location + - soil_cover + - porosity + - soil_texture + - soil_texture_meth + - host_symbiont + - host_disease_stat + - pres_animal_insect + - plant_water_method + - anim_water_method + - farm_water_source + - water_source_shared + - water_pH + - elev + - season + - solar_irradiance + - crop_yield + - season_humidity + - humidity + - adjacent_environment + - chem_administration + - food_prod + - lot_number + - fertilizer_admin + - samp_store_temp + - food_trav_mode + - food_trav_vehic + - farm_equip_san + - farm_equip + - farm_equip_shared + - food_harvest_proc + - plant_struc + - host_dry_mass + - ances_data + - genetic_mod + - food_product_type + - food_source + - spikein_strain + - organism_count + - size_frac_low + - size_frac_up + - cult_isol_date + - samp_pooling + - root_med_macronutr + - root_med_carbon + - root_med_ph + - depth + - specific_host + - pathogenicity + - biotic_relationship + - water_temp_regm + - watering_regm + - standing_water_regm + - gaseous_environment + - fungicide_regm + - climate_environment + - herbicide_regm + - non_min_nutr_regm + - pesticide_regm + - ph_regm + - salt_regm + - season_environment + - temp + - perturbation + - isol_growth_condt + - samp_store_dur + - samp_store_loc + - samp_collect_device + - samp_mat_process + - host_age + - host_common_name + - host_genotype + - host_height + - host_subspecf_genlin + - host_length + - host_life_stage + - host_phenotype + - host_taxid + - host_tot_mass + - host_spec_range + - trophic_level + - plant_product + - samp_size + - oxy_stat_samp + - seq_meth + - samp_vol_we_dna_ext + - pcr_primers + - nucl_acid_ext + - nucl_acid_amp + - lib_size + - lib_reads_seqd + - lib_layout + - lib_vector + - lib_screen + - target_gene + - target_subfragment + - mid + - adapters + - pcr_cond + - seq_quality_check + - chimera_check + - assembly_name + - assembly_qual + - assembly_software + - annot + - associated_resource + - sop + - source_mat_id + - fao_class + - local_class + - local_class_meth + - soil_type + - soil_type_meth + - soil_horizon + - horizon_meth + - link_class_info + - previous_land_use + - prev_land_use_meth + - crop_rotation + - agrochem_addition + - tillage + - fire + - flooding + - extreme_event + - link_climate_info + - annual_temp + - season_temp + - annual_precpt + - season_precpt + - cur_land_use + - slope_gradient + - slope_aspect + - profile_position + - drainage_class + - store_cond + - ph_meth + - cur_vegetation + - cur_vegetation_meth + - tot_org_carb + - tot_org_c_meth + - tot_nitro_content + - tot_nitro_cont_meth + - microbial_biomass + - micro_biomass_meth + - heavy_metals_meth + - tot_carb + - tot_phosphate + - sieving + - pool_dna_extracts + - misc_param + slot_usage: + adapters: + name: adapters + required: true + annot: + name: annot + recommended: true + assembly_name: + name: assembly_name + required: true + biotic_relationship: + name: biotic_relationship + recommended: true + chem_administration: + name: chem_administration + required: true + chimera_check: + name: chimera_check + required: true + climate_environment: + name: climate_environment + string_serialization: '{text};{period};{interval};{period}' + recommended: true + crop_rotation: + name: crop_rotation + string_serialization: '{boolean};Rn/{timestamp}/{period}' + recommended: true + cur_vegetation: + name: cur_vegetation + recommended: true + cur_vegetation_meth: + name: cur_vegetation_meth + recommended: true + depth: + name: depth + examples: + - value: 5 cm + recommended: true + drainage_class: + name: drainage_class + recommended: true + enrichment_protocol: + name: enrichment_protocol + recommended: true + extreme_event: + name: extreme_event + recommended: true + fao_class: + name: fao_class + recommended: true + fire: + name: fire + recommended: true + flooding: + name: flooding + recommended: true + food_product_type: + name: food_product_type + examples: + - value: delicatessen salad; FOODON:03316276 + food_source: + name: food_source + examples: + - value: red swamp crayfish; FOODON:03412231 + required: true + fungicide_regm: + name: fungicide_regm + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + gaseous_environment: + name: gaseous_environment + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + heavy_metals_meth: + name: heavy_metals_meth + string_serialization: '{PMID|DOI|URL}' + recommended: true + herbicide_regm: + name: herbicide_regm + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + horizon_meth: + name: horizon_meth + recommended: true + host_age: + name: host_age + required: true + host_common_name: + name: host_common_name + required: true + host_disease_stat: + name: host_disease_stat + examples: + - value: downy mildew + recommended: true + host_genotype: + name: host_genotype + required: true + host_height: + name: host_height + required: true + host_length: + name: host_length + required: true + host_life_stage: + name: host_life_stage + required: true + host_phenotype: + name: host_phenotype + required: true + host_spec_range: + name: host_spec_range + required: true + host_symbiont: + name: host_symbiont + examples: + - value: Paragordius varius + host_taxid: + name: host_taxid + examples: + - value: '9606' + string_serialization: '{integer}' + required: true + host_tot_mass: + name: host_tot_mass + required: true + humidity: + name: humidity + examples: + - value: 30% relative humidity + recommended: true + lib_layout: + name: lib_layout + recommended: true + lib_reads_seqd: + name: lib_reads_seqd + required: true + lib_screen: + name: lib_screen + required: true + lib_vector: + name: lib_vector + required: true + library_prep_kit: + name: library_prep_kit + examples: + - value: llumina DNA Prep, (M) Tagmentation + local_class: + name: local_class + recommended: true + local_class_meth: + name: local_class_meth + recommended: true + micro_biomass_meth: + name: micro_biomass_meth + required: true + microbial_biomass: + name: microbial_biomass + required: true + mid: + name: mid + required: true + non_min_nutr_regm: + name: non_min_nutr_regm + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + nucl_acid_amp: + name: nucl_acid_amp + required: true + nucl_acid_ext: + name: nucl_acid_ext + required: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + recommended: true + oxy_stat_samp: + name: oxy_stat_samp + recommended: true + pathogenicity: + name: pathogenicity + required: true + pcr_cond: + name: pcr_cond + required: true + pcr_primers: + name: pcr_primers + required: true + perturbation: + name: perturbation + recommended: true + pesticide_regm: + name: pesticide_regm + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + ph_meth: + name: ph_meth + recommended: true + ph_regm: + name: ph_regm + string_serialization: '{float};{period};{interval};{period}' + recommended: true + plant_growth_med: + name: plant_growth_med + examples: + - value: hydroponic plant culture media [EO:0007067] + plant_product: + name: plant_product + recommended: true + plant_struc: + name: plant_struc + recommended: true + pool_dna_extracts: + name: pool_dna_extracts + string_serialization: '{boolean};{float} {unit}' + required: true + prev_land_use_meth: + name: prev_land_use_meth + recommended: true + previous_land_use: + name: previous_land_use + recommended: true + profile_position: + name: profile_position + recommended: true + rel_location: + name: rel_location + recommended: true + salt_regm: + name: salt_regm + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + samp_collect_device: + name: samp_collect_device + examples: + - value: biopsy, niskin bottle, push core + required: true + samp_collect_method: + name: samp_collect_method + examples: + - value: environmental swab sampling + samp_mat_process: + name: samp_mat_process + required: true + samp_pooling: + name: samp_pooling + recommended: true + samp_size: + name: samp_size + required: true + samp_store_dur: + name: samp_store_dur + required: true + samp_store_loc: + name: samp_store_loc + required: true + samp_vol_we_dna_ext: + name: samp_vol_we_dna_ext + required: true + season_environment: + name: season_environment + string_serialization: '{text};{period};{interval};{period}' + recommended: true + sieving: + name: sieving + required: true + slope_aspect: + name: slope_aspect + recommended: true + slope_gradient: + name: slope_gradient + recommended: true + soil_conductivity: + name: soil_conductivity + description: Conductivity of some soil. + soil_cover: + name: soil_cover + recommended: true + soil_horizon: + name: soil_horizon + recommended: true + soil_pH: + name: soil_pH + description: pH of some soil. + soil_type: + name: soil_type + required: true + soil_type_meth: + name: soil_type_meth + required: true + specific_host: + name: specific_host + required: true + standing_water_regm: + name: standing_water_regm + string_serialization: '{text};{period};{interval};{period}' + recommended: true + store_cond: + name: store_cond + required: true + target_gene: + name: target_gene + required: true + target_subfragment: + name: target_subfragment + required: true + temp: + name: temp + required: true + tillage: + name: tillage + recommended: true + tot_carb: + name: tot_carb + recommended: true + tot_nitro_cont_meth: + name: tot_nitro_cont_meth + recommended: true + tot_nitro_content: + name: tot_nitro_content + recommended: true + tot_org_c_meth: + name: tot_org_c_meth + recommended: true + tot_org_carb: + name: tot_org_carb + recommended: true + tot_phosphate: + name: tot_phosphate + recommended: true + trophic_level: + name: trophic_level + recommended: true + water_pH: + name: water_pH + description: The pH measurement of the sample, or liquid portion of sample, + or aqueous phase of the fluid. + water_temp_regm: + name: water_temp_regm + string_serialization: '{float} {unit};{period};{interval};{period}' + recommended: true + watering_regm: + name: watering_regm + string_serialization: '{float} {unit};{period};{interval};{period}' + recommended: true + class_uri: MIXS:0016018 + Air: + name: Air + annotations: + use_cases: + tag: use_cases + value: bioaerosol samples, pathogen load in urban air, aerosols + description: A collection of terms appropriate when collecting and sequencing + samples obtained from a gaseous environment. + title: air + from_schema: https://w3id.org/mixs + aliases: + - MIxS-air + is_a: Extension + slots: + - samp_name + - project_name + - alt + - elev + - barometric_press + - carb_dioxide + - carb_monoxide + - chem_administration + - humidity + - methane + - organism_count + - oxygen + - oxy_stat_samp + - perturbation + - pollutants + - air_PM_concen + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - solar_irradiance + - temp + - ventilation_rate + - ventilation_type + - volatile_org_comp + - wind_direction + - wind_speed + - misc_param + slot_usage: + alt: + name: alt + required: true + elev: + name: elev + recommended: true + humidity: + name: humidity + examples: + - value: 25 gram per cubic meter + methane: + name: methane + examples: + - value: 1800 parts per billion + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + wind_direction: + name: wind_direction + examples: + - value: Northwest + wind_speed: + name: wind_speed + examples: + - value: 21 kilometer per hour + class_uri: MIXS:0016000 + BuiltEnvironment: + name: BuiltEnvironment + annotations: + use_cases: + tag: use_cases + value: microbiology studies of the built environment, NASA space station sampling, + MetaSUB transit system sampling, home, hospitals, office buildings + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained in the built-up environment, which includes terms for surface + material, humidity, temperature, moisture and occupancy type along with specific + metadata terms describing the indoor air, building and sample properties. + title: built environment + from_schema: https://w3id.org/mixs + aliases: + - MIxS-BE (built environment) + is_a: Extension + slots: + - samp_name + - project_name + - surf_material + - surf_air_cont + - rel_air_humidity + - abs_air_humidity + - surf_humidity + - air_temp + - surf_temp + - surf_moisture_ph + - build_occup_type + - surf_moisture + - dew_point + - carb_dioxide + - ventilation_type + - organism_count + - indoor_space + - indoor_surf + - filter_type + - heat_cool_type + - substructure_type + - building_setting + - light_type + - samp_sort_meth + - space_typ_state + - typ_occup_density + - occup_samp + - occup_density_samp + - address + - adj_room + - aero_struc + - amount_light + - arch_struc + - avg_occup + - avg_dew_point + - avg_temp + - bathroom_count + - bedroom_count + - built_struc_age + - built_struc_set + - built_struc_type + - ceil_area + - ceil_cond + - ceil_finish_mat + - ceil_water_mold + - ceil_struc + - ceil_texture + - ceil_thermal_mass + - ceil_type + - cool_syst_id + - date_last_rain + - build_docs + - door_size + - door_cond + - door_direct + - door_loc + - door_mat + - door_move + - door_water_mold + - door_type + - door_comp_type + - door_type_metal + - door_type_wood + - drawings + - elevator + - escalator + - exp_duct + - exp_pipe + - ext_door + - fireplace_type + - floor_age + - floor_area + - floor_cond + - floor_count + - floor_finish_mat + - floor_water_mold + - floor_struc + - floor_thermal_mass + - freq_clean + - freq_cook + - furniture + - gender_restroom + - hall_count + - handidness + - heat_deliv_loc + - heat_sys_deliv_meth + - heat_system_id + - height_carper_fiber + - inside_lux + - int_wall_cond + - last_clean + - max_occup + - mech_struc + - number_plants + - number_pets + - number_resident + - occup_document + - ext_wall_orient + - ext_window_orient + - rel_humidity_out + - pres_animal_insect + - quad_pos + - rel_samp_loc + - room_air_exch_rate + - room_architec_elem + - room_condt + - room_count + - room_dim + - room_door_dist + - room_loc + - room_moist_dam_hist + - room_net_area + - room_occup + - room_samp_pos + - room_type + - room_vol + - room_window_count + - room_connected + - room_hallway + - room_door_share + - room_wall_share + - samp_weather + - samp_floor + - samp_room_id + - samp_time_out + - season + - season_use + - shading_device_cond + - shading_device_loc + - shading_device_mat + - shad_dev_water_mold + - shading_device_type + - specific_humidity + - specific + - temp_out + - train_line + - train_stat_loc + - train_stop_loc + - vis_media + - wall_area + - wall_const_type + - wall_finish_mat + - wall_height + - wall_loc + - wall_water_mold + - wall_surf_treatment + - wall_texture + - wall_thermal_mass + - water_feat_size + - water_feat_type + - weekday + - window_size + - window_cond + - window_cover + - window_horiz_pos + - window_loc + - window_mat + - window_open_freq + - window_water_mold + - window_status + - window_type + - window_vert_pos + slot_usage: + air_temp: + name: air_temp + examples: + - value: 20 degree Celsius + required: true + avg_occup: + name: avg_occup + examples: + - value: '2' + carb_dioxide: + name: carb_dioxide + required: true + freq_clean: + name: freq_clean + string_serialization: '[ Daily| Weekly| Monthly| Quarterly | Annually| other]' + indoor_surf: + name: indoor_surf + required: true + recommended: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + required: true + surf_material: + name: surf_material + required: true + recommended: true + ventilation_type: + name: ventilation_type + required: true + class_uri: MIXS:0016001 + FoodAnimalAndAnimalFeed: + name: FoodAnimalAndAnimalFeed + annotations: + use_cases: + tag: use_cases + value: Microbiome of farm animals, their feed, and pet food. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from farm animals and their feed. + title: food-animal and animal feed + comments: + - This extension is intended to work alongside the other food extensions (farm + environment, food production facility, and human foods) for capturing contextual + data across the food supply-chain environment. + from_schema: https://w3id.org/mixs + aliases: + - MIxS-Food (animal and animal feed) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - experimental_factor + - nucl_acid_ext + - organism_count + - spikein_count + - samp_store_temp + - samp_store_dur + - samp_vol_we_dna_ext + - pool_dna_extracts + - temp + - samp_store_loc + - samp_transport_cont + - perturbation + - coll_site_geo_feat + - food_origin + - food_prod + - food_product_type + - food_source + - IFSAC_category + - intended_consumer + - samp_purpose + - animal_am + - animal_am_dur + - animal_am_freq + - animal_am_route + - animal_am_use + - animal_body_cond + - animal_diet + - animal_feed_equip + - animal_group_size + - animal_housing + - animal_sex + - bacterial_density + - cons_food_stor_dur + - cons_food_stor_temp + - cons_purch_date + - cons_qty_purchased + - cult_isol_date + - cult_result + - cult_result_org + - cult_target + - enrichment_protocol + - food_additive + - food_contact_surf + - food_contain_wrap + - food_cooking_proc + - food_dis_point + - food_dis_point_city + - food_ingredient + - food_pack_capacity + - food_pack_integrity + - food_pack_medium + - food_preserv_proc + - food_prior_contact + - food_prod_synonym + - food_product_qual + - food_quality_date + - food_source_age + - food_trace_list + - food_trav_mode + - food_trav_vehic + - food_treat_proc + - HACCP_term + - library_prep_kit + - lot_number + - microb_cult_med + - part_plant_animal + - repository_name + - samp_collect_method + - samp_pooling + - samp_rep_biol + - samp_rep_tech + - samp_source_mat_cat + - samp_stor_device + - samp_stor_media + - samp_transport_dur + - samp_transport_temp + - sequencing_kit + - sequencing_location + - serovar_or_serotype + - spikein_AMR + - spikein_antibiotic + - spikein_growth_med + - spikein_metal + - spikein_org + - spikein_serovar + - spikein_strain + - study_design + - study_inc_dur + - study_inc_temp + - study_timecourse + - study_tmnt + - timepoint + - misc_param + slot_usage: + food_origin: + name: food_origin + required: true + food_pack_medium: + name: food_pack_medium + examples: + - value: packed in fruit juice [FOODON:03480039] + food_prod: + name: food_prod + required: true + food_product_type: + name: food_product_type + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + name: food_source + examples: + - value: giant tiger prawn [FOODON:03412612] + intended_consumer: + name: intended_consumer + required: true + library_prep_kit: + name: library_prep_kit + examples: + - value: Illumina DNA Prep + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + pool_dna_extracts: + name: pool_dna_extracts + string_serialization: '{boolean},{integer}' + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: environmental swab sampling + samp_purpose: + name: samp_purpose + required: true + class_uri: MIXS:0016019 + FoodFarmEnvironment: + name: FoodFarmEnvironment + annotations: + use_cases: + tag: use_cases + value: Microbiome of farm and field crops as well as environmental samples + including irrigation, soil amendments, and farm equipment. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from the farm environment, including soil, manure, + and food harvesting equipment. + title: food-farm environment + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, food production facility, and human foods) for capturing contextual + data across the food supply-chain environment. + from_schema: https://w3id.org/mixs + aliases: + - MIxS-Food (farm environment) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - nucl_acid_ext + - humidity + - organism_count + - spikein_count + - samp_store_temp + - solar_irradiance + - ventilation_rate + - samp_store_dur + - wind_speed + - salinity + - samp_vol_we_dna_ext + - previous_land_use + - crop_rotation + - soil_type_meth + - tot_org_c_meth + - tot_nitro_cont_meth + - host_age + - host_dry_mass + - host_height + - host_length + - host_tot_mass + - root_med_carbon + - root_med_macronutr + - root_med_micronutr + - depth + - season_temp + - season_precpt + - tot_org_carb + - tot_nitro_content + - conduc + - turbidity + - size_frac_low + - size_frac_up + - temp + - ventilation_type + - wind_direction + - genetic_mod + - host_phenotype + - ph + - ances_data + - biotic_regm + - chem_administration + - growth_habit + - host_disease_stat + - host_genotype + - host_taxid + - mechanical_damage + - perturbation + - root_cond + - root_med_ph + - tillage + - ph_meth + - growth_medium + - season + - food_product_type + - samp_type + - farm_water_source + - plant_water_method + - air_PM_concen + - animal_feed_equip + - animal_intrusion + - anim_water_method + - crop_yield + - cult_result + - cult_result_org + - cult_target + - plant_part_maturity + - adjacent_environment + - water_source_adjac + - farm_equip_shared + - farm_equip_san + - farm_equip_san_freq + - farm_equip + - fertilizer_admin + - fertilizer_date + - animal_group_size + - animal_diet + - food_contact_surf + - food_contain_wrap + - food_harvest_proc + - food_pack_medium + - food_preserv_proc + - food_prod_char + - prod_label_claims + - food_trav_mode + - food_trav_vehic + - food_source + - food_treat_proc + - extr_weather_event + - date_extr_weath + - host_subspecf_genlin + - intended_consumer + - library_prep_kit + - air_flow_impede + - lot_number + - season_humidity + - part_plant_animal + - plant_growth_med + - plant_reprod_crop + - samp_purpose + - repository_name + - samp_pooling + - samp_source_mat_cat + - sequencing_kit + - sequencing_location + - serovar_or_serotype + - soil_conductivity + - soil_cover + - soil_pH + - rel_location + - soil_porosity + - soil_temp + - soil_texture_class + - soil_texture_meth + - soil_type + - spikein_org + - spikein_serovar + - spikein_growth_med + - spikein_strain + - spikein_antibiotic + - spikein_metal + - timepoint + - water_frequency + - water_pH + - water_source_shared + - enrichment_protocol + - food_quality_date + - IFSAC_category + - animal_housing + - cult_isol_date + - food_clean_proc + - misc_param + slot_usage: + biotic_regm: + name: biotic_regm + required: true + chem_administration: + name: chem_administration + required: true + crop_rotation: + name: crop_rotation + string_serialization: '{boolean};{Rn/start_time/end_time/duration}' + depth: + name: depth + examples: + - value: 10 meter + required: true + food_pack_medium: + name: food_pack_medium + examples: + - value: vacuum-packed [FOODON:03480027] + food_product_type: + name: food_product_type + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + name: food_source + examples: + - value: giant tiger prawn [FOODON:03412612] + host_age: + name: host_age + examples: + - value: 10 days + host_disease_stat: + name: host_disease_stat + examples: + - value: downy mildew + recommended: true + host_genotype: + name: host_genotype + examples: + - value: Ts + host_height: + name: host_height + examples: + - value: 1 meter + host_phenotype: + name: host_phenotype + examples: + - value: seed pod; green [PATO:0000320] + host_taxid: + name: host_taxid + examples: + - value: '4530' + string_serialization: '{NCBI taxid}' + host_tot_mass: + name: host_tot_mass + examples: + - value: 2500 gram + humidity: + name: humidity + examples: + - value: 30% relative humidity + library_prep_kit: + name: library_prep_kit + examples: + - value: Illumina DNA Prep + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + plant_growth_med: + name: plant_growth_med + examples: + - value: soil + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + soil_conductivity: + name: soil_conductivity + description: Conductivity of soil at time of sampling. + soil_pH: + name: soil_pH + description: The pH of soil at time of sampling. + soil_type: + name: soil_type + string_serialization: '{termLabel} [{termID}]' + water_pH: + name: water_pH + description: pH measurement of the sample, or liquid portion of sample, or + aqueous phase of the fluid. + wind_direction: + name: wind_direction + examples: + - value: 0 degrees; Northwest + wind_speed: + name: wind_speed + examples: + - value: 1.6 kilometers per hour + class_uri: MIXS:0016020 + FoodFoodProductionFacility: + name: FoodFoodProductionFacility + annotations: + use_cases: + tag: use_cases + value: Microbiome of food production facilities/factories + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from food production facilities. + title: food-food production facility + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, farm environment, and human foods) for capturing contextual + data across the food supply-chain environment. + from_schema: https://w3id.org/mixs + aliases: + - MIxS-Food(food production facility) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - experimental_factor + - nucl_acid_ext + - organism_count + - samp_store_temp + - samp_store_dur + - air_temp + - room_dim + - freq_clean + - samp_room_id + - samp_vol_we_dna_ext + - pool_dna_extracts + - samp_store_loc + - surf_material + - indoor_surf + - avg_occup + - samp_floor + - genetic_mod + - coll_site_geo_feat + - samp_source_mat_cat + - samp_type + - samp_stor_media + - samp_stor_device + - food_product_type + - IFSAC_category + - food_product_qual + - food_contact_surf + - facility_type + - food_trav_mode + - food_trav_vehic + - samp_transport_dur + - samp_transport_temp + - samp_collect_method + - num_samp_collect + - lot_number + - hygienic_area + - env_monitoring_zone + - area_samp_size + - samp_surf_moisture + - samp_loc_condition + - biocide_used + - ster_meth_samp_room + - enrichment_protocol + - cult_target + - microb_cult_med + - timepoint + - bacterial_density + - cult_isol_date + - cult_result + - cult_result_org + - subspecf_gen_lin + - samp_pooling + - samp_purpose + - samp_rep_tech + - samp_rep_biol + - samp_transport_cont + - study_design + - nucl_acid_ext_kit + - library_prep_kit + - sequencing_kit + - sequencing_location + - study_inc_temp + - study_inc_dur + - study_timecourse + - study_tmnt + - food_source + - food_dis_point + - food_dis_point_city + - food_origin + - food_prod_synonym + - food_additive + - food_trace_list + - part_plant_animal + - food_ingredient + - spec_intended_cons + - HACCP_term + - dietary_claim_use + - food_allergen_label + - food_prod_char + - prod_label_claims + - food_name_status + - food_preserv_proc + - food_cooking_proc + - food_treat_proc + - food_contain_wrap + - food_pack_capacity + - food_pack_medium + - food_prior_contact + - food_prod + - food_quality_date + - repository_name + - intended_consumer + - food_pack_integrity + - misc_param + slot_usage: + air_temp: + name: air_temp + examples: + - value: 4 degree Celsius + avg_occup: + name: avg_occup + examples: + - value: '6' + food_contact_surf: + name: food_contact_surf + required: true + food_pack_medium: + name: food_pack_medium + examples: + - value: vacuum-packed [FOODON:03480027] + food_product_qual: + name: food_product_qual + required: true + food_product_type: + name: food_product_type + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + name: food_source + examples: + - value: giant tiger prawn [FOODON:03412612] + library_prep_kit: + name: library_prep_kit + examples: + - value: Illumina DNA Prep + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + pool_dna_extracts: + name: pool_dna_extracts + string_serialization: '{boolean},{integer}' + samp_collect_device: + name: samp_collect_device + examples: + - value: biopsy, niskin bottle, push core + samp_collect_method: + name: samp_collect_method + examples: + - value: environmental swab sampling + samp_source_mat_cat: + name: samp_source_mat_cat + required: true + samp_stor_device: + name: samp_stor_device + required: true + samp_stor_media: + name: samp_stor_media + required: true + class_uri: MIXS:0016021 + FoodHumanFoods: + name: FoodHumanFoods + annotations: + use_cases: + tag: use_cases + value: Microbiome of foods intended for human consumption. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from human food products. + title: food-human foods + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, farm environment, and food production facilities) for capturing + contextual data across the food supply-chain environment. + from_schema: https://w3id.org/mixs + aliases: + - MIxS-Food (human foods) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - experimental_factor + - nucl_acid_ext + - organism_count + - spikein_count + - samp_store_temp + - samp_store_dur + - samp_vol_we_dna_ext + - pool_dna_extracts + - temp + - samp_store_loc + - genetic_mod + - perturbation + - coll_site_geo_feat + - food_product_type + - IFSAC_category + - ferm_chem_add + - ferm_chem_add_perc + - ferm_headspace_oxy + - ferm_medium + - ferm_pH + - ferm_rel_humidity + - ferm_temp + - ferm_time + - ferm_vessel + - bacterial_density + - cons_food_stor_dur + - cons_food_stor_temp + - cons_purch_date + - cons_qty_purchased + - cult_isol_date + - cult_result + - cult_result_org + - cult_target + - dietary_claim_use + - enrichment_protocol + - food_additive + - food_allergen_label + - food_contact_surf + - food_contain_wrap + - food_cooking_proc + - food_dis_point + - food_ingredient + - food_name_status + - food_origin + - food_pack_capacity + - food_pack_integrity + - food_pack_medium + - food_preserv_proc + - food_prior_contact + - food_prod + - food_prod_synonym + - food_product_qual + - food_quality_date + - food_source + - food_trace_list + - food_trav_mode + - food_trav_vehic + - food_treat_proc + - HACCP_term + - intended_consumer + - library_prep_kit + - lot_number + - microb_cult_med + - microb_start + - microb_start_count + - microb_start_inoc + - microb_start_prep + - microb_start_source + - microb_start_taxID + - nucl_acid_ext_kit + - num_samp_collect + - part_plant_animal + - repository_name + - samp_collect_method + - samp_pooling + - samp_rep_biol + - samp_rep_tech + - samp_source_mat_cat + - samp_stor_device + - samp_stor_media + - samp_transport_cont + - samp_transport_dur + - samp_transport_temp + - samp_purpose + - sequencing_kit + - sequencing_location + - serovar_or_serotype + - spikein_AMR + - spikein_antibiotic + - spikein_growth_med + - spikein_metal + - spikein_org + - spikein_serovar + - spikein_strain + - study_design + - study_inc_dur + - study_inc_temp + - study_timecourse + - study_tmnt + - timepoint + - misc_param + slot_usage: + food_pack_medium: + name: food_pack_medium + examples: + - value: vacuum-packed[FOODON:03480027] + food_product_type: + name: food_product_type + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + name: food_source + examples: + - value: giant tiger prawn [FOODON:03412612] + library_prep_kit: + name: library_prep_kit + examples: + - value: Illumina DNA Prep + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + pool_dna_extracts: + name: pool_dna_extracts + string_serialization: '{boolean},{integer}' + samp_collect_device: + name: samp_collect_device + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + name: samp_collect_method + examples: + - value: environmental swab sampling + class_uri: MIXS:0016022 + HostAssociated: + name: HostAssociated + annotations: + use_cases: + tag: use_cases + value: elephant fecal matter or cat oral cavity + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a non-human host, to examine the host-associated microbiome + or genome. + title: host-associated + comments: + - This is a very broad package, intended to capture many kinds of sequences derived + from the bodies of or derived from an organism. Where possible, please use a + more specific package. For example, consider using food-animal and animal feed + extension for sampling of farm animals reared for consumption. For human stool + microbiomes, consider MIxS-human-gut. Incidental associations of environmental + material with an organism may also be better served by other packages. For example, + nucleic acids derived from soil that was sampled from the hoof of a cow may + be better described by terms from the soil extension; however, soil embedded + in a wound on a cow’s leg would be best described by terms in this extension + from_schema: https://w3id.org/mixs + aliases: + - MIxS-host-associated + is_a: Extension + slots: + - samp_name + - project_name + - alt + - depth + - elev + - ances_data + - biol_stat + - genetic_mod + - host_common_name + - samp_capt_status + - samp_dis_stage + - host_taxid + - host_subject_id + - host_age + - host_life_stage + - host_sex + - host_disease_stat + - chem_administration + - host_body_habitat + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_length + - host_diet + - host_last_meal + - host_growth_cond + - host_substrate + - host_fam_rel + - host_subspecf_genlin + - host_genotype + - host_phenotype + - host_body_temp + - host_dry_mass + - blood_press_diast + - blood_press_syst + - host_color + - host_shape + - gravidity + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - samp_store_loc + - host_symbiont + - misc_param + slot_usage: + alt: + name: alt + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + host_age: + name: host_age + examples: + - value: 10 days + host_body_habitat: + name: host_body_habitat + examples: + - value: nasopharynx + host_body_site: + name: host_body_site + examples: + - value: gill [UBERON:0002535] + host_body_temp: + name: host_body_temp + examples: + - value: 15 degree Celsius + host_common_name: + name: host_common_name + examples: + - value: human + host_diet: + name: host_diet + examples: + - value: herbivore + host_disease_stat: + name: host_disease_stat + examples: + - value: rabies [DOID:11260] + host_fam_rel: + name: host_fam_rel + examples: + - value: offspring;Mussel25 + host_genotype: + name: host_genotype + examples: + - value: C57BL/6 + host_height: + name: host_height + examples: + - value: 0.1 meter + host_last_meal: + name: host_last_meal + examples: + - value: corn feed;P2H + host_life_stage: + name: host_life_stage + examples: + - value: adult + host_phenotype: + name: host_phenotype + examples: + - value: elongated [PATO:0001154] + host_subject_id: + name: host_subject_id + examples: + - value: MPI123 + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_taxid: + name: host_taxid + examples: + - value: '7955' + string_serialization: '{NCBI taxid}' + host_tot_mass: + name: host_tot_mass + examples: + - value: 2500 gram + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016002 + HumanAssociated: + name: HumanAssociated + annotations: + use_cases: + tag: use_cases + value: blood samples or biopsy samples. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their human-associated microbiome + or genome, that does not have a specific extension (e.g., skin, gut, vaginal). + title: human-associated + comments: + - For stool samples use MIxS-human-gut extension. + from_schema: https://w3id.org/mixs + aliases: + - MIxS-human-associated + is_a: Extension + slots: + - samp_name + - project_name + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - smoker + - host_hiv_stat + - drug_usage + - host_body_mass_index + - diet_last_six_month + - weight_loss_3_month + - ethnicity + - host_occupation + - pet_farm_animal + - travel_out_six_month + - twin_sibling + - medic_hist_perform + - study_complt_stat + - pulmonary_disord + - nose_throat_disord + - blood_blood_disord + - host_pulse + - gestation_state + - maternal_health_stat + - foetal_health_stat + - amniotic_fluid_color + - kidney_disord + - urogenit_tract_disor + - urine_collect_meth + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - host_symbiont + - samp_store_loc + - misc_param + slot_usage: + host_age: + name: host_age + examples: + - value: 30 years + host_body_site: + name: host_body_site + examples: + - value: Lung parenchyma [fma27360] + host_body_temp: + name: host_body_temp + examples: + - value: 36.5 degree Celsius + host_diet: + name: host_diet + examples: + - value: high-fat + host_disease_stat: + name: host_disease_stat + examples: + - value: measles [DOID:8622] + host_fam_rel: + name: host_fam_rel + examples: + - value: mother;ID298 + host_genotype: + name: host_genotype + examples: + - value: ST1 + host_height: + name: host_height + examples: + - value: 1.75 meter + host_last_meal: + name: host_last_meal + examples: + - value: french fries;P5H30M + host_phenotype: + name: host_phenotype + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + name: host_subject_id + examples: + - value: MPI123 + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_tot_mass: + name: host_tot_mass + examples: + - value: 65 kilogram + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016003 + HumanGut: + name: HumanGut + annotations: + use_cases: + tag: use_cases + value: human stool or fecal samples, or samples collected directly from the + gut. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their gut-associated microbiome. + title: human-gut + from_schema: https://w3id.org/mixs + aliases: + - MIxS-human-gut + is_a: Extension + slots: + - samp_name + - project_name + - gastrointest_disord + - liver_disord + - special_diet + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_store_temp + - samp_vol_we_dna_ext + - samp_store_dur + - host_symbiont + - samp_store_loc + - misc_param + slot_usage: + host_age: + name: host_age + examples: + - value: 30 years + host_body_site: + name: host_body_site + examples: + - value: Wall of gut [fma45653] + host_body_temp: + name: host_body_temp + examples: + - value: 36.5 degree Celsius + host_diet: + name: host_diet + examples: + - value: high-fat + host_disease_stat: + name: host_disease_stat + examples: + - value: measles [DOID:8622] + host_fam_rel: + name: host_fam_rel + examples: + - value: mother;ID298 + host_genotype: + name: host_genotype + examples: + - value: ST1 + host_height: + name: host_height + examples: + - value: 1.75 meter + host_last_meal: + name: host_last_meal + examples: + - value: french fries;P5H30M + host_phenotype: + name: host_phenotype + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + name: host_subject_id + examples: + - value: MPI123 + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_tot_mass: + name: host_tot_mass + examples: + - value: 65 kilogram + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016004 + HumanOral: + name: HumanOral + annotations: + use_cases: + tag: use_cases + value: mouth swab sampling, dental microbiome samples, microbiome of oral + swabs, nasal, mouth, throat, teeth, tongue microbiome studies + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their oral-associated microbiome. + title: human-oral + from_schema: https://w3id.org/mixs + aliases: + - MIxS-human-oral + is_a: Extension + slots: + - samp_name + - project_name + - nose_mouth_teeth_throat_disord + - time_last_toothbrush + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - host_symbiont + - samp_store_loc + - misc_param + slot_usage: + host_age: + name: host_age + examples: + - value: 30 years + host_body_site: + name: host_body_site + examples: + - value: Epithelium of tongue [fma284658] + host_body_temp: + name: host_body_temp + examples: + - value: 36.5 degree Celsius + host_diet: + name: host_diet + examples: + - value: high-fat + host_disease_stat: + name: host_disease_stat + examples: + - value: measles [DOID:8622] + host_fam_rel: + name: host_fam_rel + examples: + - value: mother;ID298 + host_genotype: + name: host_genotype + examples: + - value: ST1 + host_height: + name: host_height + examples: + - value: 1.75 meter + host_last_meal: + name: host_last_meal + examples: + - value: french fries;P5H30M + host_phenotype: + name: host_phenotype + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + name: host_subject_id + examples: + - value: MPI123 + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_tot_mass: + name: host_tot_mass + examples: + - value: 65 kilogram + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016005 + HumanSkin: + name: HumanSkin + annotations: + use_cases: + tag: use_cases + value: swab samples taken on a person’s skin surface. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their skin-associated microbiome. + title: human-skin + from_schema: https://w3id.org/mixs + aliases: + - MIxS-human-skin + is_a: Extension + slots: + - samp_name + - project_name + - dermatology_disord + - time_since_last_wash + - dominant_hand + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - samp_store_loc + - host_symbiont + - misc_param + slot_usage: + host_age: + name: host_age + examples: + - value: 30 years + host_body_site: + name: host_body_site + examples: + - value: Skin of palm of left hand [fma38303] + host_body_temp: + name: host_body_temp + examples: + - value: 36.5 degree Celsius + host_diet: + name: host_diet + examples: + - value: high-fat + host_disease_stat: + name: host_disease_stat + examples: + - value: measles [DOID:8622] + host_fam_rel: + name: host_fam_rel + examples: + - value: mother;ID298 + host_genotype: + name: host_genotype + examples: + - value: ST1 + host_height: + name: host_height + examples: + - value: 1.75 meter + host_last_meal: + name: host_last_meal + examples: + - value: french fries;P5H30M + host_phenotype: + name: host_phenotype + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + name: host_subject_id + examples: + - value: MPI123 + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_tot_mass: + name: host_tot_mass + examples: + - value: 65 kilogram + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016006 + HumanVaginal: + name: HumanVaginal + annotations: + use_cases: + tag: use_cases + value: vaginal swabbing + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their vaginal-associated microbiome. + title: human-vaginal + from_schema: https://w3id.org/mixs + aliases: + - MIxS-human-vaginal + is_a: Extension + slots: + - samp_name + - project_name + - menarche + - sexual_act + - pregnancy + - douche + - birth_control + - menopause + - hrt + - hysterectomy + - gynecologic_disord + - urogenit_disord + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_loc + - samp_store_dur + - host_symbiont + - misc_param + slot_usage: + host_age: + name: host_age + examples: + - value: 30 years + host_body_site: + name: host_body_site + examples: + - value: Ectocervix [fma86484] + host_body_temp: + name: host_body_temp + examples: + - value: 36.5 degree Celsius + host_diet: + name: host_diet + examples: + - value: high-fat + host_disease_stat: + name: host_disease_stat + examples: + - value: measles [DOID:8622] + host_fam_rel: + name: host_fam_rel + examples: + - value: mother;ID298 + host_genotype: + name: host_genotype + examples: + - value: ST1 + host_height: + name: host_height + examples: + - value: 1.75 meter + host_last_meal: + name: host_last_meal + examples: + - value: french fries;P5H30M + host_phenotype: + name: host_phenotype + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + name: host_subject_id + examples: + - value: MPI123 + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_tot_mass: + name: host_tot_mass + examples: + - value: 65 kilogram + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016007 + HydrocarbonResourcesCores: + name: HydrocarbonResourcesCores + annotations: + use_cases: + tag: use_cases + value: The microbial characterization of hydrocarbon occurrences, defined + as the natural and artificial environmental features that are rich in hydrocarbons, + from hydrocarbon rich formations, such as reservoir cores. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from environments pertaining to hydrocarbon resources, specifically + core samples. + title: hydrocarbon resources-cores + from_schema: https://w3id.org/mixs + aliases: + - MIxS-HCR (hydrocarbon resources-cores) + is_a: Extension + slots: + - samp_name + - project_name + - hcr + - hc_produced + - basin + - field + - reservoir + - hcr_temp + - tvdss_of_hcr_temp + - hcr_pressure + - tvdss_of_hcr_press + - permeability + - porosity + - lithology + - depos_env + - hcr_geol_age + - owc_tvdss + - hcr_fw_salinity + - sulfate_fw + - vfa_fw + - sr_kerog_type + - sr_lithology + - sr_dep_env + - sr_geol_age + - samp_well_name + - win + - samp_type + - samp_subtype + - temp + - pressure + - samp_tvdss + - samp_md + - elev + - oxy_stat_samp + - samp_transport_cond + - samp_store_temp + - samp_store_dur + - samp_store_loc + - samp_vol_we_dna_ext + - organism_count + - org_count_qpcr_info + - ph + - salinity + - alkalinity + - alkalinity_method + - sulfate + - sulfide + - tot_sulfur + - nitrate + - nitrite + - ammonium + - tot_nitro + - diss_iron + - sodium + - chloride + - potassium + - magnesium + - calcium + - tot_iron + - diss_org_carb + - diss_inorg_carb + - diss_inorg_phosp + - tot_phosp + - suspend_solids + - density + - diss_carb_dioxide + - diss_oxygen_fluid + - vfa + - benzene + - toluene + - ethylbenzene + - xylene + - api + - tan + - viscosity + - pour_point + - saturates_pc + - aromatics_pc + - resins_pc + - asphaltenes_pc + - misc_param + - additional_info + slot_usage: + ammonium: + name: ammonium + recommended: true + depos_env: + name: depos_env + examples: + - value: Continental - Alluvial + diss_inorg_phosp: + name: diss_inorg_phosp + recommended: true + hcr_temp: + name: hcr_temp + required: true + nitrate: + name: nitrate + recommended: true + nitrite: + name: nitrite + recommended: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + recommended: true + ph: + name: ph + recommended: true + samp_vol_we_dna_ext: + name: samp_vol_we_dna_ext + recommended: true + sulfate: + name: sulfate + recommended: true + sulfate_fw: + name: sulfate_fw + required: true + sulfide: + name: sulfide + recommended: true + temp: + name: temp + required: true + vfa_fw: + name: vfa_fw + required: true + class_uri: MIXS:0016015 + HydrocarbonResourcesFluidsSwabs: + name: HydrocarbonResourcesFluidsSwabs + annotations: + use_cases: + tag: use_cases + value: The microbial characterization of hydrocarbon occurrences, defined + as the natural and artificial environmental features that are rich in hydrocarbons, + from hydrocarbon resource fluids. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from environments pertaining to hydrocarbon resources, specifically + run-off liquids samples and swabs. + title: hydrocarbon resources-fluids/swabs + from_schema: https://w3id.org/mixs + aliases: + - MIxS-HCR (hydrocarbon resources-fluids/swabs) + is_a: Extension + slots: + - samp_name + - project_name + - hcr + - hc_produced + - basin + - field + - reservoir + - hcr_temp + - tvdss_of_hcr_temp + - hcr_pressure + - tvdss_of_hcr_press + - lithology + - depos_env + - hcr_geol_age + - hcr_fw_salinity + - sulfate_fw + - vfa_fw + - prod_start_date + - prod_rate + - water_prod_rate + - water_cut + - iwf + - add_recov_method + - iw_bt_date_well + - biocide + - biocide_admin_method + - chem_treatment + - chem_treat_method + - samp_loc_corr_rate + - samp_well_name + - win + - samp_type + - samp_subtype + - samp_collect_point + - temp + - pressure + - oxy_stat_samp + - samp_preserv + - samp_transport_cond + - samp_store_temp + - samp_store_dur + - samp_store_loc + - samp_vol_we_dna_ext + - organism_count + - org_count_qpcr_info + - ph + - salinity + - alkalinity + - alkalinity_method + - sulfate + - sulfide + - tot_sulfur + - nitrate + - nitrite + - ammonium + - tot_nitro + - diss_iron + - sodium + - chloride + - potassium + - magnesium + - calcium + - tot_iron + - diss_org_carb + - diss_inorg_carb + - diss_inorg_phosp + - tot_phosp + - suspend_solids + - density + - diss_carb_dioxide + - diss_oxygen_fluid + - vfa + - benzene + - toluene + - ethylbenzene + - xylene + - api + - tan + - viscosity + - pour_point + - saturates_pc + - aromatics_pc + - resins_pc + - asphaltenes_pc + - misc_param + - additional_info + slot_usage: + ammonium: + name: ammonium + recommended: true + depos_env: + name: depos_env + examples: + - value: Marine - Reef + diss_inorg_phosp: + name: diss_inorg_phosp + recommended: true + hcr_temp: + name: hcr_temp + recommended: true + nitrate: + name: nitrate + required: true + nitrite: + name: nitrite + recommended: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + recommended: true + ph: + name: ph + recommended: true + samp_vol_we_dna_ext: + name: samp_vol_we_dna_ext + recommended: true + sulfate: + name: sulfate + required: true + sulfate_fw: + name: sulfate_fw + recommended: true + sulfide: + name: sulfide + required: true + temp: + name: temp + required: true + vfa_fw: + name: vfa_fw + recommended: true + class_uri: MIXS:0016016 + MicrobialMatBiofilm: + name: MicrobialMatBiofilm + annotations: + use_cases: + tag: use_cases + value: samples from microbial mats at cold seeps + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from biofilm environments including microbial mats. + title: microbial mat/biofilm + from_schema: https://w3id.org/mixs + aliases: + - MIxS-microbial mat/biofilm + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - alkalinity + - alkyl_diethers + - aminopept_act + - ammonium + - bacteria_carb_prod + - biomass + - bishomohopanol + - bromide + - calcium + - carb_nitro_ratio + - chem_administration + - chloride + - chlorophyll + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_org_carb + - diss_org_nitro + - diss_oxygen + - glucosidase_act + - magnesium + - mean_frict_vel + - mean_peak_frict_vel + - methane + - misc_param + - n_alkanes + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - part_org_carb + - perturbation + - petroleum_hydrocarb + - phaeopigments + - phosphate + - phosplipid_fatt_acid + - potassium + - pressure + - redox_potential + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - silicate + - sodium + - sulfate + - sulfide + - temp + - tot_carb + - tot_nitro_content + - tot_org_carb + - turbidity + - water_content + slot_usage: + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + methane: + name: methane + examples: + - value: 0.15 micromole per liter + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + water_content: + name: water_content + string_serialization: '{float} {unit}' + class_uri: MIXS:0016008 + MiscellaneousNaturalOrArtificialEnvironment: + name: MiscellaneousNaturalOrArtificialEnvironment + description: A collection of generic terms appropriate when collecting and sequencing + samples obtained from environments, where there is no specific extension already + available. + title: miscellaneous natural or artificial environment + from_schema: https://w3id.org/mixs + aliases: + - MIxS-miscellaneous natural or artificial environment + is_a: Extension + slots: + - samp_name + - project_name + - alt + - depth + - elev + - alkalinity + - ammonium + - biomass + - bromide + - calcium + - chem_administration + - chloride + - chlorophyll + - density + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_org_nitro + - diss_oxygen + - misc_param + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - perturbation + - phosphate + - phosplipid_fatt_acid + - potassium + - pressure + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - silicate + - sodium + - sulfate + - sulfide + - temp + - water_current + slot_usage: + alt: + name: alt + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016009 + PlantAssociated: + name: PlantAssociated + annotations: + use_cases: + tag: use_cases + value: plant surface swabs, root soil or rhizosphere, cultivated plants, plant + phenotyping + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a plant to examine it’s plant-associated microbiome. + title: plant-associated + from_schema: https://w3id.org/mixs + aliases: + - MIxS-plant-associated + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - air_temp_regm + - ances_data + - antibiotic_regm + - biol_stat + - biotic_regm + - chem_administration + - chem_mutagen + - climate_environment + - cult_root_med + - fertilizer_regm + - fungicide_regm + - gaseous_environment + - genetic_mod + - gravity + - growth_facil + - growth_habit + - growth_hormone_regm + - herbicide_regm + - host_age + - host_common_name + - host_disease_stat + - host_dry_mass + - host_genotype + - host_height + - host_subspecf_genlin + - host_length + - host_life_stage + - host_phenotype + - host_taxid + - host_tot_mass + - host_wet_mass + - humidity_regm + - light_regm + - mechanical_damage + - mineral_nutr_regm + - misc_param + - non_min_nutr_regm + - organism_count + - oxy_stat_samp + - ph_regm + - perturbation + - pesticide_regm + - plant_growth_med + - plant_product + - plant_sex + - plant_struc + - radiation_regm + - rainfall_regm + - root_cond + - root_med_carbon + - root_med_macronutr + - root_med_micronutr + - root_med_suppl + - root_med_ph + - root_med_regl + - root_med_solid + - salt_regm + - samp_capt_status + - samp_dis_stage + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - season_environment + - standing_water_regm + - temp + - tiss_cult_growth_med + - water_temp_regm + - watering_regm + - host_symbiont + slot_usage: + climate_environment: + name: climate_environment + string_serialization: '{text};{Rn/start_time/end_time/duration}' + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + fungicide_regm: + name: fungicide_regm + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + gaseous_environment: + name: gaseous_environment + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + herbicide_regm: + name: herbicide_regm + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + host_age: + name: host_age + examples: + - value: 10 days + host_common_name: + name: host_common_name + examples: + - value: rice + host_disease_stat: + name: host_disease_stat + examples: + - value: downy mildew + host_genotype: + name: host_genotype + examples: + - value: Ts + host_height: + name: host_height + examples: + - value: 1 meter + host_life_stage: + name: host_life_stage + examples: + - value: adult + host_phenotype: + name: host_phenotype + examples: + - value: seed pod; green [PATO:0000320] + host_symbiont: + name: host_symbiont + examples: + - value: flukeworms + host_taxid: + name: host_taxid + examples: + - value: '4530' + string_serialization: '{NCBI taxid}' + host_tot_mass: + name: host_tot_mass + examples: + - value: 2500 gram + non_min_nutr_regm: + name: non_min_nutr_regm + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + pesticide_regm: + name: pesticide_regm + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + ph_regm: + name: ph_regm + string_serialization: '{float};{Rn/start_time/end_time/duration}' + plant_growth_med: + name: plant_growth_med + examples: + - value: hydroponic plant culture media [EO:0007067] + salt_regm: + name: salt_regm + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + season_environment: + name: season_environment + string_serialization: '{text};{Rn/start_time/end_time/duration}' + standing_water_regm: + name: standing_water_regm + string_serialization: '{text};{Rn/start_time/end_time/duration}' + water_temp_regm: + name: water_temp_regm + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + watering_regm: + name: watering_regm + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + class_uri: MIXS:0016010 + Sediment: + name: Sediment + annotations: + use_cases: + tag: use_cases + value: river bed or sea floor. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from the sedimentary area of aquatic environments. + title: sediment + comments: + - Sedimentary layers in terrestrial environments will probably be better served + by the soil extension. + from_schema: https://w3id.org/mixs + aliases: + - MIxS-sediment + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - alkalinity + - alkyl_diethers + - aminopept_act + - ammonium + - bacteria_carb_prod + - biomass + - bishomohopanol + - bromide + - calcium + - carb_nitro_ratio + - chem_administration + - chloride + - chlorophyll + - density + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_org_carb + - diss_org_nitro + - diss_oxygen + - glucosidase_act + - magnesium + - mean_frict_vel + - mean_peak_frict_vel + - methane + - misc_param + - n_alkanes + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - particle_class + - part_org_carb + - perturbation + - petroleum_hydrocarb + - phaeopigments + - phosphate + - phosplipid_fatt_acid + - porosity + - potassium + - pressure + - redox_potential + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - sediment_type + - silicate + - sodium + - sulfate + - sulfide + - temp + - tidal_stage + - tot_carb + - tot_depth_water_col + - tot_nitro_content + - tot_org_carb + - turbidity + - water_content + slot_usage: + depth: + name: depth + examples: + - value: 10 meter + required: true + elev: + name: elev + recommended: true + methane: + name: methane + examples: + - value: 0.15 micromole per liter + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + water_content: + name: water_content + string_serialization: '{float} {unit}' + class_uri: MIXS:0016011 + Soil: + name: Soil + annotations: + use_cases: + tag: use_cases + value: soil collection, island microbiome sampling, farm land or forest floor. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from the uppermost layer of Earth's crust, contributed by + the Terragenome Consortium. + title: soil + from_schema: https://w3id.org/mixs + see_also: + - https://www.fao.org/agriculture/crops/thematic-sitemap/theme/spi/soil-biodiversity/research-into-soil-biodiversity/the-terragenome-project/en/ + aliases: + - MIxS-soil + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - cur_land_use + - cur_vegetation + - cur_vegetation_meth + - previous_land_use + - prev_land_use_meth + - crop_rotation + - agrochem_addition + - tillage + - fire + - flooding + - extreme_event + - soil_horizon + - horizon_meth + - sieving + - water_content + - water_cont_soil_meth + - samp_vol_we_dna_ext + - pool_dna_extracts + - store_cond + - link_climate_info + - annual_temp + - season_temp + - annual_precpt + - season_precpt + - link_class_info + - fao_class + - local_class + - local_class_meth + - org_nitro + - temp + - soil_type + - soil_type_meth + - slope_gradient + - slope_aspect + - profile_position + - drainage_class + - soil_texture + - soil_texture_meth + - ph + - ph_meth + - org_matter + - tot_org_carb + - tot_org_c_meth + - tot_nitro_content + - tot_nitro_cont_meth + - microbial_biomass + - micro_biomass_meth + - link_addit_analys + - heavy_metals + - heavy_metals_meth + - al_sat + - al_sat_meth + - misc_param + slot_usage: + crop_rotation: + name: crop_rotation + string_serialization: '{boolean};{Rn/start_time/end_time/duration}' + depth: + name: depth + examples: + - value: 10 meter + required: true + elev: + name: elev + required: true + heavy_metals_meth: + name: heavy_metals_meth + string_serialization: '{PMID}|{DOI}|{URL}' + pool_dna_extracts: + name: pool_dna_extracts + string_serialization: '{boolean};{integer}' + soil_type: + name: soil_type + string_serialization: '{termLabel} [{termID}]' + water_content: + name: water_content + string_serialization: '{float}' + class_uri: MIXS:0016012 + SymbiontAssociated: + name: SymbiontAssociated + annotations: + use_cases: + tag: use_cases + value: the microbiome sequence of a flea sampled from a farm animal + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from an organism that lives in close association with any + other organism(s). + title: symbiont-associated + from_schema: https://w3id.org/mixs + aliases: + - MIxS-SA (symbiont-associated) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - alt + - depth + - elev + - host_subject_id + - host_common_name + - host_taxid + - source_mat_id + - host_dependence + - type_of_symbiosis + - sym_life_cycle_type + - host_life_stage + - host_age + - urobiom_sex + - mode_transmission + - route_transmission + - host_body_habitat + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_length + - host_growth_cond + - host_substrate + - host_fam_rel + - host_infra_spec_name + - host_infra_spec_rank + - host_genotype + - host_phenotype + - host_dry_mass + - host_color + - host_shape + - gravidity + - host_number + - host_symbiont + - host_specificity + - symbiont_host_role + - host_cellular_loc + - association_duration + - host_of_host_coinf + - host_of_host_name + - host_of_host_env_loc + - host_of_host_env_med + - host_of_host_taxid + - host_of_host_sub_id + - host_of_host_disease + - host_of_host_fam_rel + - host_of_host_infname + - host_of_host_infrank + - host_of_host_geno + - host_of_host_pheno + - host_of_host_gravid + - host_of_host_totmass + - chem_administration + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - samp_store_loc + - samp_store_sol + - misc_param + slot_usage: + alt: + name: alt + recommended: true + depth: + name: depth + examples: + - value: 10 meter + recommended: true + elev: + name: elev + recommended: true + host_body_habitat: + name: host_body_habitat + examples: + - value: anterior end of a tapeworm + host_body_site: + name: host_body_site + examples: + - value: scolex [UBERON:0015119] + host_common_name: + name: host_common_name + examples: + - value: trematode + host_fam_rel: + name: host_fam_rel + examples: + - value: clone;P15 + host_life_stage: + name: host_life_stage + examples: + - value: redia + required: true + host_phenotype: + name: host_phenotype + examples: + - value: soldier + host_subject_id: + name: host_subject_id + examples: + - value: P14 + host_symbiont: + name: host_symbiont + examples: + - value: Paragordius varius + host_taxid: + name: host_taxid + examples: + - value: '395013' + string_serialization: '{integer}' + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016023 + WastewaterSludge: + name: WastewaterSludge + annotations: + use_cases: + tag: use_cases + value: sewerage or industrial wastewater + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from any solid, semisolid or liquid waste. + title: wastewater/sludge + from_schema: https://w3id.org/mixs + aliases: + - MIxS-wastewater/sludge + is_a: Extension + slots: + - samp_name + - project_name + - depth + - alkalinity + - biochem_oxygen_dem + - chem_administration + - chem_oxygen_dem + - efficiency_percent + - emulsions + - gaseous_substances + - indust_eff_percent + - inorg_particles + - misc_param + - nitrate + - org_particles + - organism_count + - oxy_stat_samp + - ph + - perturbation + - phosphate + - pre_treatment + - primary_treatment + - reactor_type + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - secondary_treatment + - sewage_type + - sludge_retent_time + - sodium + - soluble_inorg_mat + - soluble_org_mat + - suspend_solids + - temp + - tertiary_treatment + - tot_nitro + - tot_phosphate + - wastewater_type + slot_usage: + depth: + name: depth + examples: + - value: 10 meter + recommended: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016013 + Water: + name: Water + annotations: + use_cases: + tag: use_cases + value: sea or river water, global ocean sampling day + description: A collection of terms appropriate when collecting samples and sequencing + water samples obtained from any aquatic environment. + title: water + from_schema: https://w3id.org/mixs + see_also: + - https://www.vliz.be/projects/assembleplus/research/ocean-sampling-day-2018.html + aliases: + - MIxS-water + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - alkalinity + - alkalinity_method + - alkyl_diethers + - aminopept_act + - ammonium + - atmospheric_data + - bacteria_carb_prod + - bac_prod + - bac_resp + - biomass + - bishomohopanol + - bromide + - calcium + - carb_nitro_ratio + - chem_administration + - chloride + - chlorophyll + - conduc + - density + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_inorg_nitro + - diss_inorg_phosp + - diss_org_carb + - diss_org_nitro + - diss_oxygen + - down_par + - fluor + - glucosidase_act + - light_intensity + - magnesium + - mean_frict_vel + - mean_peak_frict_vel + - misc_param + - n_alkanes + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - part_org_carb + - part_org_nitro + - perturbation + - petroleum_hydrocarb + - phaeopigments + - phosphate + - phosplipid_fatt_acid + - photon_flux + - potassium + - pressure + - primary_prod + - redox_potential + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - silicate + - size_frac_low + - size_frac_up + - sodium + - soluble_react_phosp + - sulfate + - sulfide + - suspend_part_matter + - temp + - tidal_stage + - tot_depth_water_col + - tot_diss_nitro + - tot_inorg_nitro + - tot_nitro + - tot_part_carb + - tot_phosp + - turbidity + - water_current + slot_usage: + depth: + name: depth + examples: + - value: 10 meter + required: true + elev: + name: elev + recommended: true + organism_count: + name: organism_count + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016014 + Checklist: + name: Checklist + description: A collection of metadata terms (slots) to minimally describe the + sampling and sequencing method of a specimen used to generate a nucleotide sequence. + from_schema: https://w3id.org/mixs + Extension: + name: Extension + description: A collection of recommended metadata terms (slots) developed by community + experts, describing the specific context under which a sample was collected. + from_schema: https://w3id.org/mixs + aliases: + - EnvironmentalPackage + MixsCompliantData: + name: MixsCompliantData + description: A collection of Data that comply with some combination of a MIxS + checklist and environmental extension + title: MIxS compliant data + from_schema: https://w3id.org/mixs + slots: + - migs_ba_data + - agriculture_data + - migs_ba_agriculture_data + - air_data + - migs_ba_air_data + - built_environment_data + - migs_ba_built_environment_data + - food_animal_and_animal_feed_data + - migs_ba_food_animal_and_animal_feed_data + - food_farm_environment_data + - migs_ba_food_farm_environment_data + - food_food_production_facility_data + - migs_ba_food_food_production_facility_data + - food_human_foods_data + - migs_ba_food_human_foods_data + - host_associated_data + - migs_ba_host_associated_data + - human_associated_data + - migs_ba_human_associated_data + - human_gut_data + - migs_ba_human_gut_data + - human_oral_data + - migs_ba_human_oral_data + - human_skin_data + - migs_ba_human_skin_data + - human_vaginal_data + - migs_ba_human_vaginal_data + - hydrocarbon_resources_cores_data + - migs_ba_hydrocarbon_resources_cores_data + - hydrocarbon_resources_fluids_swabs_data + - migs_ba_hydrocarbon_resources_fluids_swabs_data + - microbial_mat_biofilm_data + - migs_ba_microbial_mat_biofilm_data + - miscellaneous_natural_or_artificial_environment_data + - migs_ba_miscellaneous_natural_or_artificial_environment_data + - plant_associated_data + - migs_ba_plant_associated_data + - sediment_data + - migs_ba_sediment_data + - soil_data + - migs_ba_soil_data + - symbiont_associated_data + - migs_ba_symbiont_associated_data + - wastewater_sludge_data + - migs_ba_wastewater_sludge_data + - water_data + - migs_ba_water_data + - migs_eu_data + - migs_eu_agriculture_data + - migs_eu_air_data + - migs_eu_built_environment_data + - migs_eu_food_animal_and_animal_feed_data + - migs_eu_food_farm_environment_data + - migs_eu_food_food_production_facility_data + - migs_eu_food_human_foods_data + - migs_eu_host_associated_data + - migs_eu_human_associated_data + - migs_eu_human_gut_data + - migs_eu_human_oral_data + - migs_eu_human_skin_data + - migs_eu_human_vaginal_data + - migs_eu_hydrocarbon_resources_cores_data + - migs_eu_hydrocarbon_resources_fluids_swabs_data + - migs_eu_microbial_mat_biofilm_data + - migs_eu_miscellaneous_natural_or_artificial_environment_data + - migs_eu_plant_associated_data + - migs_eu_sediment_data + - migs_eu_soil_data + - migs_eu_symbiont_associated_data + - migs_eu_wastewater_sludge_data + - migs_eu_water_data + - migs_org_data + - migs_org_agriculture_data + - migs_org_air_data + - migs_org_built_environment_data + - migs_org_food_animal_and_animal_feed_data + - migs_org_food_farm_environment_data + - migs_org_food_food_production_facility_data + - migs_org_food_human_foods_data + - migs_org_host_associated_data + - migs_org_human_associated_data + - migs_org_human_gut_data + - migs_org_human_oral_data + - migs_org_human_skin_data + - migs_org_human_vaginal_data + - migs_org_hydrocarbon_resources_cores_data + - migs_org_hydrocarbon_resources_fluids_swabs_data + - migs_org_microbial_mat_biofilm_data + - migs_org_miscellaneous_natural_or_artificial_environment_data + - migs_org_plant_associated_data + - migs_org_sediment_data + - migs_org_soil_data + - migs_org_symbiont_associated_data + - migs_org_wastewater_sludge_data + - migs_org_water_data + - migs_pl_data + - migs_pl_agriculture_data + - migs_pl_air_data + - migs_pl_built_environment_data + - migs_pl_food_animal_and_animal_feed_data + - migs_pl_food_farm_environment_data + - migs_pl_food_food_production_facility_data + - migs_pl_food_human_foods_data + - migs_pl_host_associated_data + - migs_pl_human_associated_data + - migs_pl_human_gut_data + - migs_pl_human_oral_data + - migs_pl_human_skin_data + - migs_pl_human_vaginal_data + - migs_pl_hydrocarbon_resources_cores_data + - migs_pl_hydrocarbon_resources_fluids_swabs_data + - migs_pl_microbial_mat_biofilm_data + - migs_pl_miscellaneous_natural_or_artificial_environment_data + - migs_pl_plant_associated_data + - migs_pl_sediment_data + - migs_pl_soil_data + - migs_pl_symbiont_associated_data + - migs_pl_wastewater_sludge_data + - migs_pl_water_data + - migs_vi_data + - migs_vi_agriculture_data + - migs_vi_air_data + - migs_vi_built_environment_data + - migs_vi_food_animal_and_animal_feed_data + - migs_vi_food_farm_environment_data + - migs_vi_food_food_production_facility_data + - migs_vi_food_human_foods_data + - migs_vi_host_associated_data + - migs_vi_human_associated_data + - migs_vi_human_gut_data + - migs_vi_human_oral_data + - migs_vi_human_skin_data + - migs_vi_human_vaginal_data + - migs_vi_hydrocarbon_resources_cores_data + - migs_vi_hydrocarbon_resources_fluids_swabs_data + - migs_vi_microbial_mat_biofilm_data + - migs_vi_miscellaneous_natural_or_artificial_environment_data + - migs_vi_plant_associated_data + - migs_vi_sediment_data + - migs_vi_soil_data + - migs_vi_symbiont_associated_data + - migs_vi_wastewater_sludge_data + - migs_vi_water_data + - mimag_data + - mimag_agriculture_data + - mimag_air_data + - mimag_built_environment_data + - mimag_food_animal_and_animal_feed_data + - mimag_food_farm_environment_data + - mimag_food_food_production_facility_data + - mimag_food_human_foods_data + - mimag_host_associated_data + - mimag_human_associated_data + - mimag_human_gut_data + - mimag_human_oral_data + - mimag_human_skin_data + - mimag_human_vaginal_data + - mimag_hydrocarbon_resources_cores_data + - mimag_hydrocarbon_resources_fluids_swabs_data + - mimag_microbial_mat_biofilm_data + - mimag_miscellaneous_natural_or_artificial_environment_data + - mimag_plant_associated_data + - mimag_sediment_data + - mimag_soil_data + - mimag_symbiont_associated_data + - mimag_wastewater_sludge_data + - mimag_water_data + - mimarks_c_data + - mimarks_c_agriculture_data + - mimarks_c_air_data + - mimarks_c_built_environment_data + - mimarks_c_food_animal_and_animal_feed_data + - mimarks_c_food_farm_environment_data + - mimarks_c_food_food_production_facility_data + - mimarks_c_food_human_foods_data + - mimarks_c_host_associated_data + - mimarks_c_human_associated_data + - mimarks_c_human_gut_data + - mimarks_c_human_oral_data + - mimarks_c_human_skin_data + - mimarks_c_human_vaginal_data + - mimarks_c_hydrocarbon_resources_cores_data + - mimarks_c_hydrocarbon_resources_fluids_swabs_data + - mimarks_c_microbial_mat_biofilm_data + - mimarks_c_miscellaneous_natural_or_artificial_environment_data + - mimarks_c_plant_associated_data + - mimarks_c_sediment_data + - mimarks_c_soil_data + - mimarks_c_symbiont_associated_data + - mimarks_c_wastewater_sludge_data + - mimarks_c_water_data + - mimarks_s_data + - mimarks_s_agriculture_data + - mimarks_s_air_data + - mimarks_s_built_environment_data + - mimarks_s_food_animal_and_animal_feed_data + - mimarks_s_food_farm_environment_data + - mimarks_s_food_food_production_facility_data + - mimarks_s_food_human_foods_data + - mimarks_s_host_associated_data + - mimarks_s_human_associated_data + - mimarks_s_human_gut_data + - mimarks_s_human_oral_data + - mimarks_s_human_skin_data + - mimarks_s_human_vaginal_data + - mimarks_s_hydrocarbon_resources_cores_data + - mimarks_s_hydrocarbon_resources_fluids_swabs_data + - mimarks_s_microbial_mat_biofilm_data + - mimarks_s_miscellaneous_natural_or_artificial_environment_data + - mimarks_s_plant_associated_data + - mimarks_s_sediment_data + - mimarks_s_soil_data + - mimarks_s_symbiont_associated_data + - mimarks_s_wastewater_sludge_data + - mimarks_s_water_data + - mims_data + - mims_agriculture_data + - mims_air_data + - mims_built_environment_data + - mims_food_animal_and_animal_feed_data + - mims_food_farm_environment_data + - mims_food_food_production_facility_data + - mims_food_human_foods_data + - mims_host_associated_data + - mims_human_associated_data + - mims_human_gut_data + - mims_human_oral_data + - mims_human_skin_data + - mims_human_vaginal_data + - mims_hydrocarbon_resources_cores_data + - mims_hydrocarbon_resources_fluids_swabs_data + - mims_microbial_mat_biofilm_data + - mims_miscellaneous_natural_or_artificial_environment_data + - mims_plant_associated_data + - mims_sediment_data + - mims_soil_data + - mims_symbiont_associated_data + - mims_wastewater_sludge_data + - mims_water_data + - misag_data + - misag_agriculture_data + - misag_air_data + - misag_built_environment_data + - misag_food_animal_and_animal_feed_data + - misag_food_farm_environment_data + - misag_food_food_production_facility_data + - misag_food_human_foods_data + - misag_host_associated_data + - misag_human_associated_data + - misag_human_gut_data + - misag_human_oral_data + - misag_human_skin_data + - misag_human_vaginal_data + - misag_hydrocarbon_resources_cores_data + - misag_hydrocarbon_resources_fluids_swabs_data + - misag_microbial_mat_biofilm_data + - misag_miscellaneous_natural_or_artificial_environment_data + - misag_plant_associated_data + - misag_sediment_data + - misag_soil_data + - misag_symbiont_associated_data + - misag_wastewater_sludge_data + - misag_water_data + - miuvig_data + - miuvig_agriculture_data + - miuvig_air_data + - miuvig_built_environment_data + - miuvig_food_animal_and_animal_feed_data + - miuvig_food_farm_environment_data + - miuvig_food_food_production_facility_data + - miuvig_food_human_foods_data + - miuvig_host_associated_data + - miuvig_human_associated_data + - miuvig_human_gut_data + - miuvig_human_oral_data + - miuvig_human_skin_data + - miuvig_human_vaginal_data + - miuvig_hydrocarbon_resources_cores_data + - miuvig_hydrocarbon_resources_fluids_swabs_data + - miuvig_microbial_mat_biofilm_data + - miuvig_miscellaneous_natural_or_artificial_environment_data + - miuvig_plant_associated_data + - miuvig_sediment_data + - miuvig_soil_data + - miuvig_symbiont_associated_data + - miuvig_wastewater_sludge_data + - miuvig_water_data + tree_root: true + MigsBaAgriculture: + name: MigsBaAgriculture + description: MIxS Data that comply with the MigsBa checklist and the Agriculture + Extension + title: MigsBa combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MigsBa + class_uri: MIXS:0010003_0016018 + MigsBaAir: + name: MigsBaAir + description: MIxS Data that comply with the MigsBa checklist and the Air Extension + title: MigsBa combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MigsBa + class_uri: MIXS:0010003_0016000 + MigsBaBuiltEnvironment: + name: MigsBaBuiltEnvironment + description: MIxS Data that comply with the MigsBa checklist and the BuiltEnvironment + Extension + title: MigsBa combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016001 + MigsBaFoodAnimalAndAnimalFeed: + name: MigsBaFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MigsBa checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsBa combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsBa + class_uri: MIXS:0010003_0016019 + MigsBaFoodFarmEnvironment: + name: MigsBaFoodFarmEnvironment + description: MIxS Data that comply with the MigsBa checklist and the FoodFarmEnvironment + Extension + title: MigsBa combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016020 + MigsBaFoodFoodProductionFacility: + name: MigsBaFoodFoodProductionFacility + description: MIxS Data that comply with the MigsBa checklist and the FoodFoodProductionFacility + Extension + title: MigsBa combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MigsBa + class_uri: MIXS:0010003_0016021 + MigsBaFoodHumanFoods: + name: MigsBaFoodHumanFoods + description: MIxS Data that comply with the MigsBa checklist and the FoodHumanFoods + Extension + title: MigsBa combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MigsBa + class_uri: MIXS:0010003_0016022 + MigsBaHostAssociated: + name: MigsBaHostAssociated + description: MIxS Data that comply with the MigsBa checklist and the HostAssociated + Extension + title: MigsBa combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016002 + MigsBaHumanAssociated: + name: MigsBaHumanAssociated + description: MIxS Data that comply with the MigsBa checklist and the HumanAssociated + Extension + title: MigsBa combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016003 + MigsBaHumanGut: + name: MigsBaHumanGut + description: MIxS Data that comply with the MigsBa checklist and the HumanGut + Extension + title: MigsBa combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MigsBa + class_uri: MIXS:0010003_0016004 + MigsBaHumanOral: + name: MigsBaHumanOral + description: MIxS Data that comply with the MigsBa checklist and the HumanOral + Extension + title: MigsBa combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MigsBa + class_uri: MIXS:0010003_0016005 + MigsBaHumanSkin: + name: MigsBaHumanSkin + description: MIxS Data that comply with the MigsBa checklist and the HumanSkin + Extension + title: MigsBa combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MigsBa + class_uri: MIXS:0010003_0016006 + MigsBaHumanVaginal: + name: MigsBaHumanVaginal + description: MIxS Data that comply with the MigsBa checklist and the HumanVaginal + Extension + title: MigsBa combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MigsBa + class_uri: MIXS:0010003_0016007 + MigsBaHydrocarbonResourcesCores: + name: MigsBaHydrocarbonResourcesCores + description: MIxS Data that comply with the MigsBa checklist and the HydrocarbonResourcesCores + Extension + title: MigsBa combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MigsBa + class_uri: MIXS:0010003_0016015 + MigsBaHydrocarbonResourcesFluidsSwabs: + name: MigsBaHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MigsBa checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsBa combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsBa + class_uri: MIXS:0010003_0016016 + MigsBaMicrobialMatBiofilm: + name: MigsBaMicrobialMatBiofilm + description: MIxS Data that comply with the MigsBa checklist and the MicrobialMatBiofilm + Extension + title: MigsBa combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MigsBa + class_uri: MIXS:0010003_0016008 + MigsBaMiscellaneousNaturalOrArtificialEnvironment: + name: MigsBaMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MigsBa checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016009 + MigsBaPlantAssociated: + name: MigsBaPlantAssociated + description: MIxS Data that comply with the MigsBa checklist and the PlantAssociated + Extension + title: MigsBa combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016010 + MigsBaSediment: + name: MigsBaSediment + description: MIxS Data that comply with the MigsBa checklist and the Sediment + Extension + title: MigsBa combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016011 + MigsBaSoil: + name: MigsBaSoil + description: MIxS Data that comply with the MigsBa checklist and the Soil Extension + title: MigsBa combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MigsBa + class_uri: MIXS:0010003_0016012 + MigsBaSymbiontAssociated: + name: MigsBaSymbiontAssociated + description: MIxS Data that comply with the MigsBa checklist and the SymbiontAssociated + Extension + title: MigsBa combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016023 + MigsBaWastewaterSludge: + name: MigsBaWastewaterSludge + description: MIxS Data that comply with the MigsBa checklist and the WastewaterSludge + Extension + title: MigsBa combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MigsBa + class_uri: MIXS:0010003_0016013 + MigsBaWater: + name: MigsBaWater + description: MIxS Data that comply with the MigsBa checklist and the Water Extension + title: MigsBa combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MigsBa + class_uri: MIXS:0010003_0016014 + MigsEuAgriculture: + name: MigsEuAgriculture + description: MIxS Data that comply with the MigsEu checklist and the Agriculture + Extension + title: MigsEu combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MigsEu + class_uri: MIXS:0010002_0016018 + MigsEuAir: + name: MigsEuAir + description: MIxS Data that comply with the MigsEu checklist and the Air Extension + title: MigsEu combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MigsEu + class_uri: MIXS:0010002_0016000 + MigsEuBuiltEnvironment: + name: MigsEuBuiltEnvironment + description: MIxS Data that comply with the MigsEu checklist and the BuiltEnvironment + Extension + title: MigsEu combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016001 + MigsEuFoodAnimalAndAnimalFeed: + name: MigsEuFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MigsEu checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsEu combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsEu + class_uri: MIXS:0010002_0016019 + MigsEuFoodFarmEnvironment: + name: MigsEuFoodFarmEnvironment + description: MIxS Data that comply with the MigsEu checklist and the FoodFarmEnvironment + Extension + title: MigsEu combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016020 + MigsEuFoodFoodProductionFacility: + name: MigsEuFoodFoodProductionFacility + description: MIxS Data that comply with the MigsEu checklist and the FoodFoodProductionFacility + Extension + title: MigsEu combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MigsEu + class_uri: MIXS:0010002_0016021 + MigsEuFoodHumanFoods: + name: MigsEuFoodHumanFoods + description: MIxS Data that comply with the MigsEu checklist and the FoodHumanFoods + Extension + title: MigsEu combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MigsEu + class_uri: MIXS:0010002_0016022 + MigsEuHostAssociated: + name: MigsEuHostAssociated + description: MIxS Data that comply with the MigsEu checklist and the HostAssociated + Extension + title: MigsEu combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016002 + MigsEuHumanAssociated: + name: MigsEuHumanAssociated + description: MIxS Data that comply with the MigsEu checklist and the HumanAssociated + Extension + title: MigsEu combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016003 + MigsEuHumanGut: + name: MigsEuHumanGut + description: MIxS Data that comply with the MigsEu checklist and the HumanGut + Extension + title: MigsEu combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MigsEu + class_uri: MIXS:0010002_0016004 + MigsEuHumanOral: + name: MigsEuHumanOral + description: MIxS Data that comply with the MigsEu checklist and the HumanOral + Extension + title: MigsEu combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MigsEu + class_uri: MIXS:0010002_0016005 + MigsEuHumanSkin: + name: MigsEuHumanSkin + description: MIxS Data that comply with the MigsEu checklist and the HumanSkin + Extension + title: MigsEu combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MigsEu + class_uri: MIXS:0010002_0016006 + MigsEuHumanVaginal: + name: MigsEuHumanVaginal + description: MIxS Data that comply with the MigsEu checklist and the HumanVaginal + Extension + title: MigsEu combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MigsEu + class_uri: MIXS:0010002_0016007 + MigsEuHydrocarbonResourcesCores: + name: MigsEuHydrocarbonResourcesCores + description: MIxS Data that comply with the MigsEu checklist and the HydrocarbonResourcesCores + Extension + title: MigsEu combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MigsEu + class_uri: MIXS:0010002_0016015 + MigsEuHydrocarbonResourcesFluidsSwabs: + name: MigsEuHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MigsEu checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsEu combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsEu + class_uri: MIXS:0010002_0016016 + MigsEuMicrobialMatBiofilm: + name: MigsEuMicrobialMatBiofilm + description: MIxS Data that comply with the MigsEu checklist and the MicrobialMatBiofilm + Extension + title: MigsEu combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MigsEu + class_uri: MIXS:0010002_0016008 + MigsEuMiscellaneousNaturalOrArtificialEnvironment: + name: MigsEuMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MigsEu checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016009 + MigsEuPlantAssociated: + name: MigsEuPlantAssociated + description: MIxS Data that comply with the MigsEu checklist and the PlantAssociated + Extension + title: MigsEu combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016010 + MigsEuSediment: + name: MigsEuSediment + description: MIxS Data that comply with the MigsEu checklist and the Sediment + Extension + title: MigsEu combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016011 + MigsEuSoil: + name: MigsEuSoil + description: MIxS Data that comply with the MigsEu checklist and the Soil Extension + title: MigsEu combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MigsEu + class_uri: MIXS:0010002_0016012 + MigsEuSymbiontAssociated: + name: MigsEuSymbiontAssociated + description: MIxS Data that comply with the MigsEu checklist and the SymbiontAssociated + Extension + title: MigsEu combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016023 + MigsEuWastewaterSludge: + name: MigsEuWastewaterSludge + description: MIxS Data that comply with the MigsEu checklist and the WastewaterSludge + Extension + title: MigsEu combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MigsEu + class_uri: MIXS:0010002_0016013 + MigsEuWater: + name: MigsEuWater + description: MIxS Data that comply with the MigsEu checklist and the Water Extension + title: MigsEu combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MigsEu + class_uri: MIXS:0010002_0016014 + MigsOrgAgriculture: + name: MigsOrgAgriculture + description: MIxS Data that comply with the MigsOrg checklist and the Agriculture + Extension + title: MigsOrg combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016018 + MigsOrgAir: + name: MigsOrgAir + description: MIxS Data that comply with the MigsOrg checklist and the Air Extension + title: MigsOrg combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016000 + MigsOrgBuiltEnvironment: + name: MigsOrgBuiltEnvironment + description: MIxS Data that comply with the MigsOrg checklist and the BuiltEnvironment + Extension + title: MigsOrg combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016001 + MigsOrgFoodAnimalAndAnimalFeed: + name: MigsOrgFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MigsOrg checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsOrg combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016019 + MigsOrgFoodFarmEnvironment: + name: MigsOrgFoodFarmEnvironment + description: MIxS Data that comply with the MigsOrg checklist and the FoodFarmEnvironment + Extension + title: MigsOrg combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016020 + MigsOrgFoodFoodProductionFacility: + name: MigsOrgFoodFoodProductionFacility + description: MIxS Data that comply with the MigsOrg checklist and the FoodFoodProductionFacility + Extension + title: MigsOrg combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016021 + MigsOrgFoodHumanFoods: + name: MigsOrgFoodHumanFoods + description: MIxS Data that comply with the MigsOrg checklist and the FoodHumanFoods + Extension + title: MigsOrg combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016022 + MigsOrgHostAssociated: + name: MigsOrgHostAssociated + description: MIxS Data that comply with the MigsOrg checklist and the HostAssociated + Extension + title: MigsOrg combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016002 + MigsOrgHumanAssociated: + name: MigsOrgHumanAssociated + description: MIxS Data that comply with the MigsOrg checklist and the HumanAssociated + Extension + title: MigsOrg combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016003 + MigsOrgHumanGut: + name: MigsOrgHumanGut + description: MIxS Data that comply with the MigsOrg checklist and the HumanGut + Extension + title: MigsOrg combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016004 + MigsOrgHumanOral: + name: MigsOrgHumanOral + description: MIxS Data that comply with the MigsOrg checklist and the HumanOral + Extension + title: MigsOrg combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016005 + MigsOrgHumanSkin: + name: MigsOrgHumanSkin + description: MIxS Data that comply with the MigsOrg checklist and the HumanSkin + Extension + title: MigsOrg combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016006 + MigsOrgHumanVaginal: + name: MigsOrgHumanVaginal + description: MIxS Data that comply with the MigsOrg checklist and the HumanVaginal + Extension + title: MigsOrg combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016007 + MigsOrgHydrocarbonResourcesCores: + name: MigsOrgHydrocarbonResourcesCores + description: MIxS Data that comply with the MigsOrg checklist and the HydrocarbonResourcesCores + Extension + title: MigsOrg combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016015 + MigsOrgHydrocarbonResourcesFluidsSwabs: + name: MigsOrgHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MigsOrg checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsOrg combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016016 + MigsOrgMicrobialMatBiofilm: + name: MigsOrgMicrobialMatBiofilm + description: MIxS Data that comply with the MigsOrg checklist and the MicrobialMatBiofilm + Extension + title: MigsOrg combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016008 + MigsOrgMiscellaneousNaturalOrArtificialEnvironment: + name: MigsOrgMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MigsOrg checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016009 + MigsOrgPlantAssociated: + name: MigsOrgPlantAssociated + description: MIxS Data that comply with the MigsOrg checklist and the PlantAssociated + Extension + title: MigsOrg combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016010 + MigsOrgSediment: + name: MigsOrgSediment + description: MIxS Data that comply with the MigsOrg checklist and the Sediment + Extension + title: MigsOrg combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016011 + MigsOrgSoil: + name: MigsOrgSoil + description: MIxS Data that comply with the MigsOrg checklist and the Soil Extension + title: MigsOrg combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016012 + MigsOrgSymbiontAssociated: + name: MigsOrgSymbiontAssociated + description: MIxS Data that comply with the MigsOrg checklist and the SymbiontAssociated + Extension + title: MigsOrg combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016023 + MigsOrgWastewaterSludge: + name: MigsOrgWastewaterSludge + description: MIxS Data that comply with the MigsOrg checklist and the WastewaterSludge + Extension + title: MigsOrg combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016013 + MigsOrgWater: + name: MigsOrgWater + description: MIxS Data that comply with the MigsOrg checklist and the Water Extension + title: MigsOrg combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016014 + MigsPlAgriculture: + name: MigsPlAgriculture + description: MIxS Data that comply with the MigsPl checklist and the Agriculture + Extension + title: MigsPl combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MigsPl + class_uri: MIXS:0010004_0016018 + MigsPlAir: + name: MigsPlAir + description: MIxS Data that comply with the MigsPl checklist and the Air Extension + title: MigsPl combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MigsPl + class_uri: MIXS:0010004_0016000 + MigsPlBuiltEnvironment: + name: MigsPlBuiltEnvironment + description: MIxS Data that comply with the MigsPl checklist and the BuiltEnvironment + Extension + title: MigsPl combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016001 + MigsPlFoodAnimalAndAnimalFeed: + name: MigsPlFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MigsPl checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsPl combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsPl + class_uri: MIXS:0010004_0016019 + MigsPlFoodFarmEnvironment: + name: MigsPlFoodFarmEnvironment + description: MIxS Data that comply with the MigsPl checklist and the FoodFarmEnvironment + Extension + title: MigsPl combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016020 + MigsPlFoodFoodProductionFacility: + name: MigsPlFoodFoodProductionFacility + description: MIxS Data that comply with the MigsPl checklist and the FoodFoodProductionFacility + Extension + title: MigsPl combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MigsPl + class_uri: MIXS:0010004_0016021 + MigsPlFoodHumanFoods: + name: MigsPlFoodHumanFoods + description: MIxS Data that comply with the MigsPl checklist and the FoodHumanFoods + Extension + title: MigsPl combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MigsPl + class_uri: MIXS:0010004_0016022 + MigsPlHostAssociated: + name: MigsPlHostAssociated + description: MIxS Data that comply with the MigsPl checklist and the HostAssociated + Extension + title: MigsPl combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016002 + MigsPlHumanAssociated: + name: MigsPlHumanAssociated + description: MIxS Data that comply with the MigsPl checklist and the HumanAssociated + Extension + title: MigsPl combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016003 + MigsPlHumanGut: + name: MigsPlHumanGut + description: MIxS Data that comply with the MigsPl checklist and the HumanGut + Extension + title: MigsPl combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MigsPl + class_uri: MIXS:0010004_0016004 + MigsPlHumanOral: + name: MigsPlHumanOral + description: MIxS Data that comply with the MigsPl checklist and the HumanOral + Extension + title: MigsPl combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MigsPl + class_uri: MIXS:0010004_0016005 + MigsPlHumanSkin: + name: MigsPlHumanSkin + description: MIxS Data that comply with the MigsPl checklist and the HumanSkin + Extension + title: MigsPl combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MigsPl + class_uri: MIXS:0010004_0016006 + MigsPlHumanVaginal: + name: MigsPlHumanVaginal + description: MIxS Data that comply with the MigsPl checklist and the HumanVaginal + Extension + title: MigsPl combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MigsPl + class_uri: MIXS:0010004_0016007 + MigsPlHydrocarbonResourcesCores: + name: MigsPlHydrocarbonResourcesCores + description: MIxS Data that comply with the MigsPl checklist and the HydrocarbonResourcesCores + Extension + title: MigsPl combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MigsPl + class_uri: MIXS:0010004_0016015 + MigsPlHydrocarbonResourcesFluidsSwabs: + name: MigsPlHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MigsPl checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsPl combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsPl + class_uri: MIXS:0010004_0016016 + MigsPlMicrobialMatBiofilm: + name: MigsPlMicrobialMatBiofilm + description: MIxS Data that comply with the MigsPl checklist and the MicrobialMatBiofilm + Extension + title: MigsPl combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MigsPl + class_uri: MIXS:0010004_0016008 + MigsPlMiscellaneousNaturalOrArtificialEnvironment: + name: MigsPlMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MigsPl checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016009 + MigsPlPlantAssociated: + name: MigsPlPlantAssociated + description: MIxS Data that comply with the MigsPl checklist and the PlantAssociated + Extension + title: MigsPl combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016010 + MigsPlSediment: + name: MigsPlSediment + description: MIxS Data that comply with the MigsPl checklist and the Sediment + Extension + title: MigsPl combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016011 + MigsPlSoil: + name: MigsPlSoil + description: MIxS Data that comply with the MigsPl checklist and the Soil Extension + title: MigsPl combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MigsPl + class_uri: MIXS:0010004_0016012 + MigsPlSymbiontAssociated: + name: MigsPlSymbiontAssociated + description: MIxS Data that comply with the MigsPl checklist and the SymbiontAssociated + Extension + title: MigsPl combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016023 + MigsPlWastewaterSludge: + name: MigsPlWastewaterSludge + description: MIxS Data that comply with the MigsPl checklist and the WastewaterSludge + Extension + title: MigsPl combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MigsPl + class_uri: MIXS:0010004_0016013 + MigsPlWater: + name: MigsPlWater + description: MIxS Data that comply with the MigsPl checklist and the Water Extension + title: MigsPl combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MigsPl + class_uri: MIXS:0010004_0016014 + MigsViAgriculture: + name: MigsViAgriculture + description: MIxS Data that comply with the MigsVi checklist and the Agriculture + Extension + title: MigsVi combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MigsVi + class_uri: MIXS:0010005_0016018 + MigsViAir: + name: MigsViAir + description: MIxS Data that comply with the MigsVi checklist and the Air Extension + title: MigsVi combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MigsVi + class_uri: MIXS:0010005_0016000 + MigsViBuiltEnvironment: + name: MigsViBuiltEnvironment + description: MIxS Data that comply with the MigsVi checklist and the BuiltEnvironment + Extension + title: MigsVi combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016001 + MigsViFoodAnimalAndAnimalFeed: + name: MigsViFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MigsVi checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsVi combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsVi + class_uri: MIXS:0010005_0016019 + MigsViFoodFarmEnvironment: + name: MigsViFoodFarmEnvironment + description: MIxS Data that comply with the MigsVi checklist and the FoodFarmEnvironment + Extension + title: MigsVi combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016020 + MigsViFoodFoodProductionFacility: + name: MigsViFoodFoodProductionFacility + description: MIxS Data that comply with the MigsVi checklist and the FoodFoodProductionFacility + Extension + title: MigsVi combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MigsVi + class_uri: MIXS:0010005_0016021 + MigsViFoodHumanFoods: + name: MigsViFoodHumanFoods + description: MIxS Data that comply with the MigsVi checklist and the FoodHumanFoods + Extension + title: MigsVi combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MigsVi + class_uri: MIXS:0010005_0016022 + MigsViHostAssociated: + name: MigsViHostAssociated + description: MIxS Data that comply with the MigsVi checklist and the HostAssociated + Extension + title: MigsVi combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016002 + MigsViHumanAssociated: + name: MigsViHumanAssociated + description: MIxS Data that comply with the MigsVi checklist and the HumanAssociated + Extension + title: MigsVi combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016003 + MigsViHumanGut: + name: MigsViHumanGut + description: MIxS Data that comply with the MigsVi checklist and the HumanGut + Extension + title: MigsVi combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MigsVi + class_uri: MIXS:0010005_0016004 + MigsViHumanOral: + name: MigsViHumanOral + description: MIxS Data that comply with the MigsVi checklist and the HumanOral + Extension + title: MigsVi combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MigsVi + class_uri: MIXS:0010005_0016005 + MigsViHumanSkin: + name: MigsViHumanSkin + description: MIxS Data that comply with the MigsVi checklist and the HumanSkin + Extension + title: MigsVi combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MigsVi + class_uri: MIXS:0010005_0016006 + MigsViHumanVaginal: + name: MigsViHumanVaginal + description: MIxS Data that comply with the MigsVi checklist and the HumanVaginal + Extension + title: MigsVi combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MigsVi + class_uri: MIXS:0010005_0016007 + MigsViHydrocarbonResourcesCores: + name: MigsViHydrocarbonResourcesCores + description: MIxS Data that comply with the MigsVi checklist and the HydrocarbonResourcesCores + Extension + title: MigsVi combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MigsVi + class_uri: MIXS:0010005_0016015 + MigsViHydrocarbonResourcesFluidsSwabs: + name: MigsViHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MigsVi checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsVi combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsVi + class_uri: MIXS:0010005_0016016 + MigsViMicrobialMatBiofilm: + name: MigsViMicrobialMatBiofilm + description: MIxS Data that comply with the MigsVi checklist and the MicrobialMatBiofilm + Extension + title: MigsVi combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MigsVi + class_uri: MIXS:0010005_0016008 + MigsViMiscellaneousNaturalOrArtificialEnvironment: + name: MigsViMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MigsVi checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016009 + MigsViPlantAssociated: + name: MigsViPlantAssociated + description: MIxS Data that comply with the MigsVi checklist and the PlantAssociated + Extension + title: MigsVi combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016010 + MigsViSediment: + name: MigsViSediment + description: MIxS Data that comply with the MigsVi checklist and the Sediment + Extension + title: MigsVi combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016011 + MigsViSoil: + name: MigsViSoil + description: MIxS Data that comply with the MigsVi checklist and the Soil Extension + title: MigsVi combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MigsVi + class_uri: MIXS:0010005_0016012 + MigsViSymbiontAssociated: + name: MigsViSymbiontAssociated + description: MIxS Data that comply with the MigsVi checklist and the SymbiontAssociated + Extension + title: MigsVi combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016023 + MigsViWastewaterSludge: + name: MigsViWastewaterSludge + description: MIxS Data that comply with the MigsVi checklist and the WastewaterSludge + Extension + title: MigsVi combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MigsVi + class_uri: MIXS:0010005_0016013 + MigsViWater: + name: MigsViWater + description: MIxS Data that comply with the MigsVi checklist and the Water Extension + title: MigsVi combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MigsVi + class_uri: MIXS:0010005_0016014 + MimagAgriculture: + name: MimagAgriculture + description: MIxS Data that comply with the Mimag checklist and the Agriculture + Extension + title: Mimag combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - Mimag + class_uri: MIXS:0010011_0016018 + MimagAir: + name: MimagAir + description: MIxS Data that comply with the Mimag checklist and the Air Extension + title: Mimag combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - Mimag + class_uri: MIXS:0010011_0016000 + MimagBuiltEnvironment: + name: MimagBuiltEnvironment + description: MIxS Data that comply with the Mimag checklist and the BuiltEnvironment + Extension + title: Mimag combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - Mimag + class_uri: MIXS:0010011_0016001 + MimagFoodAnimalAndAnimalFeed: + name: MimagFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the Mimag checklist and the FoodAnimalAndAnimalFeed + Extension + title: Mimag combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - Mimag + class_uri: MIXS:0010011_0016019 + MimagFoodFarmEnvironment: + name: MimagFoodFarmEnvironment + description: MIxS Data that comply with the Mimag checklist and the FoodFarmEnvironment + Extension + title: Mimag combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - Mimag + class_uri: MIXS:0010011_0016020 + MimagFoodFoodProductionFacility: + name: MimagFoodFoodProductionFacility + description: MIxS Data that comply with the Mimag checklist and the FoodFoodProductionFacility + Extension + title: Mimag combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - Mimag + class_uri: MIXS:0010011_0016021 + MimagFoodHumanFoods: + name: MimagFoodHumanFoods + description: MIxS Data that comply with the Mimag checklist and the FoodHumanFoods + Extension + title: Mimag combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - Mimag + class_uri: MIXS:0010011_0016022 + MimagHostAssociated: + name: MimagHostAssociated + description: MIxS Data that comply with the Mimag checklist and the HostAssociated + Extension + title: Mimag combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016002 + MimagHumanAssociated: + name: MimagHumanAssociated + description: MIxS Data that comply with the Mimag checklist and the HumanAssociated + Extension + title: Mimag combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016003 + MimagHumanGut: + name: MimagHumanGut + description: MIxS Data that comply with the Mimag checklist and the HumanGut Extension + title: Mimag combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - Mimag + class_uri: MIXS:0010011_0016004 + MimagHumanOral: + name: MimagHumanOral + description: MIxS Data that comply with the Mimag checklist and the HumanOral + Extension + title: Mimag combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - Mimag + class_uri: MIXS:0010011_0016005 + MimagHumanSkin: + name: MimagHumanSkin + description: MIxS Data that comply with the Mimag checklist and the HumanSkin + Extension + title: Mimag combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - Mimag + class_uri: MIXS:0010011_0016006 + MimagHumanVaginal: + name: MimagHumanVaginal + description: MIxS Data that comply with the Mimag checklist and the HumanVaginal + Extension + title: Mimag combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - Mimag + class_uri: MIXS:0010011_0016007 + MimagHydrocarbonResourcesCores: + name: MimagHydrocarbonResourcesCores + description: MIxS Data that comply with the Mimag checklist and the HydrocarbonResourcesCores + Extension + title: Mimag combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - Mimag + class_uri: MIXS:0010011_0016015 + MimagHydrocarbonResourcesFluidsSwabs: + name: MimagHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the Mimag checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Mimag combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Mimag + class_uri: MIXS:0010011_0016016 + MimagMicrobialMatBiofilm: + name: MimagMicrobialMatBiofilm + description: MIxS Data that comply with the Mimag checklist and the MicrobialMatBiofilm + Extension + title: Mimag combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - Mimag + class_uri: MIXS:0010011_0016008 + MimagMiscellaneousNaturalOrArtificialEnvironment: + name: MimagMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the Mimag checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Mimag combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Mimag + class_uri: MIXS:0010011_0016009 + MimagPlantAssociated: + name: MimagPlantAssociated + description: MIxS Data that comply with the Mimag checklist and the PlantAssociated + Extension + title: Mimag combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016010 + MimagSediment: + name: MimagSediment + description: MIxS Data that comply with the Mimag checklist and the Sediment Extension + title: Mimag combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - Mimag + class_uri: MIXS:0010011_0016011 + MimagSoil: + name: MimagSoil + description: MIxS Data that comply with the Mimag checklist and the Soil Extension + title: Mimag combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - Mimag + class_uri: MIXS:0010011_0016012 + MimagSymbiontAssociated: + name: MimagSymbiontAssociated + description: MIxS Data that comply with the Mimag checklist and the SymbiontAssociated + Extension + title: Mimag combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016023 + MimagWastewaterSludge: + name: MimagWastewaterSludge + description: MIxS Data that comply with the Mimag checklist and the WastewaterSludge + Extension + title: Mimag combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - Mimag + class_uri: MIXS:0010011_0016013 + MimagWater: + name: MimagWater + description: MIxS Data that comply with the Mimag checklist and the Water Extension + title: Mimag combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - Mimag + class_uri: MIXS:0010011_0016014 + MimarksCAgriculture: + name: MimarksCAgriculture + description: MIxS Data that comply with the MimarksC checklist and the Agriculture + Extension + title: MimarksC combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MimarksC + class_uri: MIXS:0010009_0016018 + MimarksCAir: + name: MimarksCAir + description: MIxS Data that comply with the MimarksC checklist and the Air Extension + title: MimarksC combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MimarksC + class_uri: MIXS:0010009_0016000 + MimarksCBuiltEnvironment: + name: MimarksCBuiltEnvironment + description: MIxS Data that comply with the MimarksC checklist and the BuiltEnvironment + Extension + title: MimarksC combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016001 + MimarksCFoodAnimalAndAnimalFeed: + name: MimarksCFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MimarksC checklist and the FoodAnimalAndAnimalFeed + Extension + title: MimarksC combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MimarksC + class_uri: MIXS:0010009_0016019 + MimarksCFoodFarmEnvironment: + name: MimarksCFoodFarmEnvironment + description: MIxS Data that comply with the MimarksC checklist and the FoodFarmEnvironment + Extension + title: MimarksC combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016020 + MimarksCFoodFoodProductionFacility: + name: MimarksCFoodFoodProductionFacility + description: MIxS Data that comply with the MimarksC checklist and the FoodFoodProductionFacility + Extension + title: MimarksC combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MimarksC + class_uri: MIXS:0010009_0016021 + MimarksCFoodHumanFoods: + name: MimarksCFoodHumanFoods + description: MIxS Data that comply with the MimarksC checklist and the FoodHumanFoods + Extension + title: MimarksC combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MimarksC + class_uri: MIXS:0010009_0016022 + MimarksCHostAssociated: + name: MimarksCHostAssociated + description: MIxS Data that comply with the MimarksC checklist and the HostAssociated + Extension + title: MimarksC combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016002 + MimarksCHumanAssociated: + name: MimarksCHumanAssociated + description: MIxS Data that comply with the MimarksC checklist and the HumanAssociated + Extension + title: MimarksC combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016003 + MimarksCHumanGut: + name: MimarksCHumanGut + description: MIxS Data that comply with the MimarksC checklist and the HumanGut + Extension + title: MimarksC combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MimarksC + class_uri: MIXS:0010009_0016004 + MimarksCHumanOral: + name: MimarksCHumanOral + description: MIxS Data that comply with the MimarksC checklist and the HumanOral + Extension + title: MimarksC combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MimarksC + class_uri: MIXS:0010009_0016005 + MimarksCHumanSkin: + name: MimarksCHumanSkin + description: MIxS Data that comply with the MimarksC checklist and the HumanSkin + Extension + title: MimarksC combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MimarksC + class_uri: MIXS:0010009_0016006 + MimarksCHumanVaginal: + name: MimarksCHumanVaginal + description: MIxS Data that comply with the MimarksC checklist and the HumanVaginal + Extension + title: MimarksC combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MimarksC + class_uri: MIXS:0010009_0016007 + MimarksCHydrocarbonResourcesCores: + name: MimarksCHydrocarbonResourcesCores + description: MIxS Data that comply with the MimarksC checklist and the HydrocarbonResourcesCores + Extension + title: MimarksC combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MimarksC + class_uri: MIXS:0010009_0016015 + MimarksCHydrocarbonResourcesFluidsSwabs: + name: MimarksCHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MimarksC checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MimarksC combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MimarksC + class_uri: MIXS:0010009_0016016 + MimarksCMicrobialMatBiofilm: + name: MimarksCMicrobialMatBiofilm + description: MIxS Data that comply with the MimarksC checklist and the MicrobialMatBiofilm + Extension + title: MimarksC combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MimarksC + class_uri: MIXS:0010009_0016008 + MimarksCMiscellaneousNaturalOrArtificialEnvironment: + name: MimarksCMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MimarksC checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016009 + MimarksCPlantAssociated: + name: MimarksCPlantAssociated + description: MIxS Data that comply with the MimarksC checklist and the PlantAssociated + Extension + title: MimarksC combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016010 + MimarksCSediment: + name: MimarksCSediment + description: MIxS Data that comply with the MimarksC checklist and the Sediment + Extension + title: MimarksC combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016011 + MimarksCSoil: + name: MimarksCSoil + description: MIxS Data that comply with the MimarksC checklist and the Soil Extension + title: MimarksC combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MimarksC + class_uri: MIXS:0010009_0016012 + MimarksCSymbiontAssociated: + name: MimarksCSymbiontAssociated + description: MIxS Data that comply with the MimarksC checklist and the SymbiontAssociated + Extension + title: MimarksC combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016023 + MimarksCWastewaterSludge: + name: MimarksCWastewaterSludge + description: MIxS Data that comply with the MimarksC checklist and the WastewaterSludge + Extension + title: MimarksC combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MimarksC + class_uri: MIXS:0010009_0016013 + MimarksCWater: + name: MimarksCWater + description: MIxS Data that comply with the MimarksC checklist and the Water Extension + title: MimarksC combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MimarksC + class_uri: MIXS:0010009_0016014 + MimarksSAgriculture: + name: MimarksSAgriculture + description: MIxS Data that comply with the MimarksS checklist and the Agriculture + Extension + title: MimarksS combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - MimarksS + class_uri: MIXS:0010008_0016018 + MimarksSAir: + name: MimarksSAir + description: MIxS Data that comply with the MimarksS checklist and the Air Extension + title: MimarksS combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - MimarksS + class_uri: MIXS:0010008_0016000 + MimarksSBuiltEnvironment: + name: MimarksSBuiltEnvironment + description: MIxS Data that comply with the MimarksS checklist and the BuiltEnvironment + Extension + title: MimarksS combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016001 + MimarksSFoodAnimalAndAnimalFeed: + name: MimarksSFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the MimarksS checklist and the FoodAnimalAndAnimalFeed + Extension + title: MimarksS combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - MimarksS + class_uri: MIXS:0010008_0016019 + MimarksSFoodFarmEnvironment: + name: MimarksSFoodFarmEnvironment + description: MIxS Data that comply with the MimarksS checklist and the FoodFarmEnvironment + Extension + title: MimarksS combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016020 + MimarksSFoodFoodProductionFacility: + name: MimarksSFoodFoodProductionFacility + description: MIxS Data that comply with the MimarksS checklist and the FoodFoodProductionFacility + Extension + title: MimarksS combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - MimarksS + class_uri: MIXS:0010008_0016021 + MimarksSFoodHumanFoods: + name: MimarksSFoodHumanFoods + description: MIxS Data that comply with the MimarksS checklist and the FoodHumanFoods + Extension + title: MimarksS combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - MimarksS + class_uri: MIXS:0010008_0016022 + MimarksSHostAssociated: + name: MimarksSHostAssociated + description: MIxS Data that comply with the MimarksS checklist and the HostAssociated + Extension + title: MimarksS combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016002 + MimarksSHumanAssociated: + name: MimarksSHumanAssociated + description: MIxS Data that comply with the MimarksS checklist and the HumanAssociated + Extension + title: MimarksS combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016003 + MimarksSHumanGut: + name: MimarksSHumanGut + description: MIxS Data that comply with the MimarksS checklist and the HumanGut + Extension + title: MimarksS combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - MimarksS + class_uri: MIXS:0010008_0016004 + MimarksSHumanOral: + name: MimarksSHumanOral + description: MIxS Data that comply with the MimarksS checklist and the HumanOral + Extension + title: MimarksS combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - MimarksS + class_uri: MIXS:0010008_0016005 + MimarksSHumanSkin: + name: MimarksSHumanSkin + description: MIxS Data that comply with the MimarksS checklist and the HumanSkin + Extension + title: MimarksS combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - MimarksS + class_uri: MIXS:0010008_0016006 + MimarksSHumanVaginal: + name: MimarksSHumanVaginal + description: MIxS Data that comply with the MimarksS checklist and the HumanVaginal + Extension + title: MimarksS combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - MimarksS + class_uri: MIXS:0010008_0016007 + MimarksSHydrocarbonResourcesCores: + name: MimarksSHydrocarbonResourcesCores + description: MIxS Data that comply with the MimarksS checklist and the HydrocarbonResourcesCores + Extension + title: MimarksS combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - MimarksS + class_uri: MIXS:0010008_0016015 + MimarksSHydrocarbonResourcesFluidsSwabs: + name: MimarksSHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the MimarksS checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MimarksS combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MimarksS + class_uri: MIXS:0010008_0016016 + MimarksSMicrobialMatBiofilm: + name: MimarksSMicrobialMatBiofilm + description: MIxS Data that comply with the MimarksS checklist and the MicrobialMatBiofilm + Extension + title: MimarksS combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - MimarksS + class_uri: MIXS:0010008_0016008 + MimarksSMiscellaneousNaturalOrArtificialEnvironment: + name: MimarksSMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the MimarksS checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016009 + MimarksSPlantAssociated: + name: MimarksSPlantAssociated + description: MIxS Data that comply with the MimarksS checklist and the PlantAssociated + Extension + title: MimarksS combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016010 + MimarksSSediment: + name: MimarksSSediment + description: MIxS Data that comply with the MimarksS checklist and the Sediment + Extension + title: MimarksS combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016011 + MimarksSSoil: + name: MimarksSSoil + description: MIxS Data that comply with the MimarksS checklist and the Soil Extension + title: MimarksS combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - MimarksS + class_uri: MIXS:0010008_0016012 + MimarksSSymbiontAssociated: + name: MimarksSSymbiontAssociated + description: MIxS Data that comply with the MimarksS checklist and the SymbiontAssociated + Extension + title: MimarksS combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016023 + MimarksSWastewaterSludge: + name: MimarksSWastewaterSludge + description: MIxS Data that comply with the MimarksS checklist and the WastewaterSludge + Extension + title: MimarksS combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - MimarksS + class_uri: MIXS:0010008_0016013 + MimarksSWater: + name: MimarksSWater + description: MIxS Data that comply with the MimarksS checklist and the Water Extension + title: MimarksS combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - MimarksS + class_uri: MIXS:0010008_0016014 + MimsAgriculture: + name: MimsAgriculture + description: MIxS Data that comply with the Mims checklist and the Agriculture + Extension + title: Mims combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - Mims + class_uri: MIXS:0010007_0016018 + MimsAir: + name: MimsAir + description: MIxS Data that comply with the Mims checklist and the Air Extension + title: Mims combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - Mims + class_uri: MIXS:0010007_0016000 + MimsBuiltEnvironment: + name: MimsBuiltEnvironment + description: MIxS Data that comply with the Mims checklist and the BuiltEnvironment + Extension + title: Mims combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - Mims + class_uri: MIXS:0010007_0016001 + MimsFoodAnimalAndAnimalFeed: + name: MimsFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the Mims checklist and the FoodAnimalAndAnimalFeed + Extension + title: Mims combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - Mims + class_uri: MIXS:0010007_0016019 + MimsFoodFarmEnvironment: + name: MimsFoodFarmEnvironment + description: MIxS Data that comply with the Mims checklist and the FoodFarmEnvironment + Extension + title: Mims combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - Mims + class_uri: MIXS:0010007_0016020 + MimsFoodFoodProductionFacility: + name: MimsFoodFoodProductionFacility + description: MIxS Data that comply with the Mims checklist and the FoodFoodProductionFacility + Extension + title: Mims combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - Mims + class_uri: MIXS:0010007_0016021 + MimsFoodHumanFoods: + name: MimsFoodHumanFoods + description: MIxS Data that comply with the Mims checklist and the FoodHumanFoods + Extension + title: Mims combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - Mims + class_uri: MIXS:0010007_0016022 + MimsHostAssociated: + name: MimsHostAssociated + description: MIxS Data that comply with the Mims checklist and the HostAssociated + Extension + title: Mims combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016002 + MimsHumanAssociated: + name: MimsHumanAssociated + description: MIxS Data that comply with the Mims checklist and the HumanAssociated + Extension + title: Mims combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016003 + MimsHumanGut: + name: MimsHumanGut + description: MIxS Data that comply with the Mims checklist and the HumanGut Extension + title: Mims combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - Mims + class_uri: MIXS:0010007_0016004 + MimsHumanOral: + name: MimsHumanOral + description: MIxS Data that comply with the Mims checklist and the HumanOral Extension + title: Mims combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - Mims + class_uri: MIXS:0010007_0016005 + MimsHumanSkin: + name: MimsHumanSkin + description: MIxS Data that comply with the Mims checklist and the HumanSkin Extension + title: Mims combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - Mims + class_uri: MIXS:0010007_0016006 + MimsHumanVaginal: + name: MimsHumanVaginal + description: MIxS Data that comply with the Mims checklist and the HumanVaginal + Extension + title: Mims combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - Mims + class_uri: MIXS:0010007_0016007 + MimsHydrocarbonResourcesCores: + name: MimsHydrocarbonResourcesCores + description: MIxS Data that comply with the Mims checklist and the HydrocarbonResourcesCores + Extension + title: Mims combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - Mims + class_uri: MIXS:0010007_0016015 + MimsHydrocarbonResourcesFluidsSwabs: + name: MimsHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the Mims checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Mims combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Mims + class_uri: MIXS:0010007_0016016 + MimsMicrobialMatBiofilm: + name: MimsMicrobialMatBiofilm + description: MIxS Data that comply with the Mims checklist and the MicrobialMatBiofilm + Extension + title: Mims combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - Mims + class_uri: MIXS:0010007_0016008 + MimsMiscellaneousNaturalOrArtificialEnvironment: + name: MimsMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the Mims checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Mims combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Mims + class_uri: MIXS:0010007_0016009 + MimsPlantAssociated: + name: MimsPlantAssociated + description: MIxS Data that comply with the Mims checklist and the PlantAssociated + Extension + title: Mims combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016010 + MimsSediment: + name: MimsSediment + description: MIxS Data that comply with the Mims checklist and the Sediment Extension + title: Mims combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - Mims + class_uri: MIXS:0010007_0016011 + MimsSoil: + name: MimsSoil + description: MIxS Data that comply with the Mims checklist and the Soil Extension + title: Mims combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - Mims + class_uri: MIXS:0010007_0016012 + MimsSymbiontAssociated: + name: MimsSymbiontAssociated + description: MIxS Data that comply with the Mims checklist and the SymbiontAssociated + Extension + title: Mims combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016023 + MimsWastewaterSludge: + name: MimsWastewaterSludge + description: MIxS Data that comply with the Mims checklist and the WastewaterSludge + Extension + title: Mims combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - Mims + class_uri: MIXS:0010007_0016013 + MimsWater: + name: MimsWater + description: MIxS Data that comply with the Mims checklist and the Water Extension + title: Mims combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - Mims + class_uri: MIXS:0010007_0016014 + MisagAgriculture: + name: MisagAgriculture + description: MIxS Data that comply with the Misag checklist and the Agriculture + Extension + title: Misag combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - Misag + class_uri: MIXS:0010010_0016018 + MisagAir: + name: MisagAir + description: MIxS Data that comply with the Misag checklist and the Air Extension + title: Misag combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - Misag + class_uri: MIXS:0010010_0016000 + MisagBuiltEnvironment: + name: MisagBuiltEnvironment + description: MIxS Data that comply with the Misag checklist and the BuiltEnvironment + Extension + title: Misag combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - Misag + class_uri: MIXS:0010010_0016001 + MisagFoodAnimalAndAnimalFeed: + name: MisagFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the Misag checklist and the FoodAnimalAndAnimalFeed + Extension + title: Misag combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - Misag + class_uri: MIXS:0010010_0016019 + MisagFoodFarmEnvironment: + name: MisagFoodFarmEnvironment + description: MIxS Data that comply with the Misag checklist and the FoodFarmEnvironment + Extension + title: Misag combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - Misag + class_uri: MIXS:0010010_0016020 + MisagFoodFoodProductionFacility: + name: MisagFoodFoodProductionFacility + description: MIxS Data that comply with the Misag checklist and the FoodFoodProductionFacility + Extension + title: Misag combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - Misag + class_uri: MIXS:0010010_0016021 + MisagFoodHumanFoods: + name: MisagFoodHumanFoods + description: MIxS Data that comply with the Misag checklist and the FoodHumanFoods + Extension + title: Misag combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - Misag + class_uri: MIXS:0010010_0016022 + MisagHostAssociated: + name: MisagHostAssociated + description: MIxS Data that comply with the Misag checklist and the HostAssociated + Extension + title: Misag combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016002 + MisagHumanAssociated: + name: MisagHumanAssociated + description: MIxS Data that comply with the Misag checklist and the HumanAssociated + Extension + title: Misag combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016003 + MisagHumanGut: + name: MisagHumanGut + description: MIxS Data that comply with the Misag checklist and the HumanGut Extension + title: Misag combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - Misag + class_uri: MIXS:0010010_0016004 + MisagHumanOral: + name: MisagHumanOral + description: MIxS Data that comply with the Misag checklist and the HumanOral + Extension + title: Misag combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - Misag + class_uri: MIXS:0010010_0016005 + MisagHumanSkin: + name: MisagHumanSkin + description: MIxS Data that comply with the Misag checklist and the HumanSkin + Extension + title: Misag combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - Misag + class_uri: MIXS:0010010_0016006 + MisagHumanVaginal: + name: MisagHumanVaginal + description: MIxS Data that comply with the Misag checklist and the HumanVaginal + Extension + title: Misag combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - Misag + class_uri: MIXS:0010010_0016007 + MisagHydrocarbonResourcesCores: + name: MisagHydrocarbonResourcesCores + description: MIxS Data that comply with the Misag checklist and the HydrocarbonResourcesCores + Extension + title: Misag combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - Misag + class_uri: MIXS:0010010_0016015 + MisagHydrocarbonResourcesFluidsSwabs: + name: MisagHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the Misag checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Misag combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Misag + class_uri: MIXS:0010010_0016016 + MisagMicrobialMatBiofilm: + name: MisagMicrobialMatBiofilm + description: MIxS Data that comply with the Misag checklist and the MicrobialMatBiofilm + Extension + title: Misag combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - Misag + class_uri: MIXS:0010010_0016008 + MisagMiscellaneousNaturalOrArtificialEnvironment: + name: MisagMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the Misag checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Misag combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Misag + class_uri: MIXS:0010010_0016009 + MisagPlantAssociated: + name: MisagPlantAssociated + description: MIxS Data that comply with the Misag checklist and the PlantAssociated + Extension + title: Misag combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016010 + MisagSediment: + name: MisagSediment + description: MIxS Data that comply with the Misag checklist and the Sediment Extension + title: Misag combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - Misag + class_uri: MIXS:0010010_0016011 + MisagSoil: + name: MisagSoil + description: MIxS Data that comply with the Misag checklist and the Soil Extension + title: Misag combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - Misag + class_uri: MIXS:0010010_0016012 + MisagSymbiontAssociated: + name: MisagSymbiontAssociated + description: MIxS Data that comply with the Misag checklist and the SymbiontAssociated + Extension + title: Misag combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016023 + MisagWastewaterSludge: + name: MisagWastewaterSludge + description: MIxS Data that comply with the Misag checklist and the WastewaterSludge + Extension + title: Misag combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - Misag + class_uri: MIXS:0010010_0016013 + MisagWater: + name: MisagWater + description: MIxS Data that comply with the Misag checklist and the Water Extension + title: Misag combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - Misag + class_uri: MIXS:0010010_0016014 + MiuvigAgriculture: + name: MiuvigAgriculture + description: MIxS Data that comply with the Miuvig checklist and the Agriculture + Extension + title: Miuvig combined with Agriculture + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Agriculture + mixins: + - Miuvig + class_uri: MIXS:0010012_0016018 + MiuvigAir: + name: MiuvigAir + description: MIxS Data that comply with the Miuvig checklist and the Air Extension + title: Miuvig combined with Air + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Air + mixins: + - Miuvig + class_uri: MIXS:0010012_0016000 + MiuvigBuiltEnvironment: + name: MiuvigBuiltEnvironment + description: MIxS Data that comply with the Miuvig checklist and the BuiltEnvironment + Extension + title: Miuvig combined with BuiltEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: BuiltEnvironment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016001 + MiuvigFoodAnimalAndAnimalFeed: + name: MiuvigFoodAnimalAndAnimalFeed + description: MIxS Data that comply with the Miuvig checklist and the FoodAnimalAndAnimalFeed + Extension + title: Miuvig combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodAnimalAndAnimalFeed + mixins: + - Miuvig + class_uri: MIXS:0010012_0016019 + MiuvigFoodFarmEnvironment: + name: MiuvigFoodFarmEnvironment + description: MIxS Data that comply with the Miuvig checklist and the FoodFarmEnvironment + Extension + title: Miuvig combined with FoodFarmEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFarmEnvironment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016020 + MiuvigFoodFoodProductionFacility: + name: MiuvigFoodFoodProductionFacility + description: MIxS Data that comply with the Miuvig checklist and the FoodFoodProductionFacility + Extension + title: Miuvig combined with FoodFoodProductionFacility + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodFoodProductionFacility + mixins: + - Miuvig + class_uri: MIXS:0010012_0016021 + MiuvigFoodHumanFoods: + name: MiuvigFoodHumanFoods + description: MIxS Data that comply with the Miuvig checklist and the FoodHumanFoods + Extension + title: Miuvig combined with FoodHumanFoods + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: FoodHumanFoods + mixins: + - Miuvig + class_uri: MIXS:0010012_0016022 + MiuvigHostAssociated: + name: MiuvigHostAssociated + description: MIxS Data that comply with the Miuvig checklist and the HostAssociated + Extension + title: Miuvig combined with HostAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HostAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016002 + MiuvigHumanAssociated: + name: MiuvigHumanAssociated + description: MIxS Data that comply with the Miuvig checklist and the HumanAssociated + Extension + title: Miuvig combined with HumanAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016003 + MiuvigHumanGut: + name: MiuvigHumanGut + description: MIxS Data that comply with the Miuvig checklist and the HumanGut + Extension + title: Miuvig combined with HumanGut + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanGut + mixins: + - Miuvig + class_uri: MIXS:0010012_0016004 + MiuvigHumanOral: + name: MiuvigHumanOral + description: MIxS Data that comply with the Miuvig checklist and the HumanOral + Extension + title: Miuvig combined with HumanOral + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanOral + mixins: + - Miuvig + class_uri: MIXS:0010012_0016005 + MiuvigHumanSkin: + name: MiuvigHumanSkin + description: MIxS Data that comply with the Miuvig checklist and the HumanSkin + Extension + title: Miuvig combined with HumanSkin + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanSkin + mixins: + - Miuvig + class_uri: MIXS:0010012_0016006 + MiuvigHumanVaginal: + name: MiuvigHumanVaginal + description: MIxS Data that comply with the Miuvig checklist and the HumanVaginal + Extension + title: Miuvig combined with HumanVaginal + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HumanVaginal + mixins: + - Miuvig + class_uri: MIXS:0010012_0016007 + MiuvigHydrocarbonResourcesCores: + name: MiuvigHydrocarbonResourcesCores + description: MIxS Data that comply with the Miuvig checklist and the HydrocarbonResourcesCores + Extension + title: Miuvig combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesCores + mixins: + - Miuvig + class_uri: MIXS:0010012_0016015 + MiuvigHydrocarbonResourcesFluidsSwabs: + name: MiuvigHydrocarbonResourcesFluidsSwabs + description: MIxS Data that comply with the Miuvig checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Miuvig combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Miuvig + class_uri: MIXS:0010012_0016016 + MiuvigMicrobialMatBiofilm: + name: MiuvigMicrobialMatBiofilm + description: MIxS Data that comply with the Miuvig checklist and the MicrobialMatBiofilm + Extension + title: Miuvig combined with MicrobialMatBiofilm + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MicrobialMatBiofilm + mixins: + - Miuvig + class_uri: MIXS:0010012_0016008 + MiuvigMiscellaneousNaturalOrArtificialEnvironment: + name: MiuvigMiscellaneousNaturalOrArtificialEnvironment + description: MIxS Data that comply with the Miuvig checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016009 + MiuvigPlantAssociated: + name: MiuvigPlantAssociated + description: MIxS Data that comply with the Miuvig checklist and the PlantAssociated + Extension + title: Miuvig combined with PlantAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: PlantAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016010 + MiuvigSediment: + name: MiuvigSediment + description: MIxS Data that comply with the Miuvig checklist and the Sediment + Extension + title: Miuvig combined with Sediment + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Sediment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016011 + MiuvigSoil: + name: MiuvigSoil + description: MIxS Data that comply with the Miuvig checklist and the Soil Extension + title: Miuvig combined with Soil + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Soil + mixins: + - Miuvig + class_uri: MIXS:0010012_0016012 + MiuvigSymbiontAssociated: + name: MiuvigSymbiontAssociated + description: MIxS Data that comply with the Miuvig checklist and the SymbiontAssociated + Extension + title: Miuvig combined with SymbiontAssociated + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: SymbiontAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016023 + MiuvigWastewaterSludge: + name: MiuvigWastewaterSludge + description: MIxS Data that comply with the Miuvig checklist and the WastewaterSludge + Extension + title: Miuvig combined with WastewaterSludge + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: WastewaterSludge + mixins: + - Miuvig + class_uri: MIXS:0010012_0016013 + MiuvigWater: + name: MiuvigWater + description: MIxS Data that comply with the Miuvig checklist and the Water Extension + title: Miuvig combined with Water + in_subset: + - combination_classes + from_schema: https://w3id.org/mixs + is_a: Water + mixins: + - Miuvig + class_uri: MIXS:0010012_0016014 +source_file: src/mixs/schema/mixs.yaml +settings: + agrochemical_name: + setting_key: agrochemical_name + setting_value: .* + amount: + setting_key: amount + setting_value: '[-+]?[0-9]*\.?[0-9]+' + add_recov_methods: + setting_key: add_recov_methods + setting_value: Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer + Addition|Surfactant Addition|Not Applicable|other + DOI: + setting_key: DOI + setting_value: ^doi:10.\d{2,9}/.*$ + NCBItaxon_id: + setting_key: NCBItaxon_id + setting_value: NCBITaxon:\d+ + PMID: + setting_key: PMID + setting_value: ^PMID:\d+$ + URL: + setting_key: URL + setting_value: ^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$ + adapter: + setting_key: adapter + setting_value: '[ACGTRKSYMWBHDVN]+' + adapter_A_DNA_sequence: + setting_key: adapter_A_DNA_sequence + setting_value: '[ACGTRKSYMWBHDVN]+' + adapter_B_DNA_sequence: + setting_key: adapter_B_DNA_sequence + setting_value: '[ACGTRKSYMWBHDVN]+' + ambiguous_nucleotides: + setting_key: ambiguous_nucleotides + setting_value: '[ACGTRKSYMWBHDVN]+' + country: + setting_key: country + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + date_time_stamp: + setting_key: date_time_stamp + setting_value: (\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$ + duration: + setting_key: duration + setting_value: P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W) + float: + setting_key: float + setting_value: '[-+]?[0-9]*\.?[0-9]+' + integer: + setting_key: integer + setting_value: '[1-9][0-9]*' + lat: + setting_key: lat + setting_value: (-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) + lon: + setting_key: lon + setting_value: -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2}) + name: + setting_key: name + setting_value: .* + parameters: + setting_key: parameters + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + particulate_matter_name: + setting_key: particulate_matter_name + setting_value: .* + region: + setting_key: region + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + room_name: + setting_key: room_name + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + room_number: + setting_key: room_number + setting_value: '[1-9][0-9]*' + scientific_float: + setting_key: scientific_float + setting_value: '[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?' + software: + setting_key: software + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + specific_location: + setting_key: specific_location + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + storage_condition_type: + setting_key: storage_condition_type + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + termID: + setting_key: termID + setting_value: '[a-zA-Z]{2,}:[a-zA-Z0-9]\d+' + termLabel: + setting_key: termLabel + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + text: + setting_key: text + setting_value: .* + unit: + setting_key: unit + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + version: + setting_key: version + setting_value: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) diff --git a/assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions_standardized.yaml b/assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions_standardized.yaml new file mode 100644 index 0000000000..dc0aaa3359 --- /dev/null +++ b/assets/mixs-schema-formatting-variants/mixs_with_enum_descriptions_standardized.yaml @@ -0,0 +1,22700 @@ +--- +name: mixs +description: 'This file contains a YAML-formatted specification of the Minimum Information + about any (x) Sequence (MIxS) standard, generated using LinkML (https://linkml.io/linkml/). + This file is released by the Genomic Standards Consortium (GSC; https://www.gensc.org/) + for use by anyone handling data or information about biological sequences. This + file is also used as an authoritative ''source of truth'' to generate downstream + GSC artifacts, available here: https://github.com/GenomicsStandardsConsortium/mixs/tree/main/project' +comments: + - 'slot titles that are associated with more than one slot name/SCN: host sex' +source: https://github.com/GenomicsStandardsConsortium/mixs/raw/issue-610-temp-mixs-xlsx-home/mixs/excel/mixs_v6.xlsx +id: https://w3id.org/mixs +version: v6.2.0 +imports: + - linkml:types +prefixes: + linkml: https://w3id.org/linkml/ + MIXS: https://w3id.org/mixs/ + xsd: http://www.w3.org/2001/XMLSchema# + shex: http://www.w3.org/ns/shex# + schema: http://schema.org/ +default_prefix: MIXS +default_range: string +subsets: + combination_classes: {} + sequencing: {} + environment: {} + nucleic acid sequence source: {} + investigation: {} +enums: + BiolStatEnum: + description: Permissible values, used by term biol_stat + permissible_values: + breeder's line: {} + clonal selection: {} + hybrid: {} + inbred line: {} + mutant: {} + natural: {} + semi-natural: {} + wild: {} + AssemblyQualEnum: + description: Permissible values, used by term assembly_qual + permissible_values: + Finished genome: {} + High-quality draft genome: {} + Medium-quality draft genome: {} + Low-quality draft genome: {} + Genome fragment(s): {} + AeroStrucEnum: + description: Permissible values, used by term aero_struc + permissible_values: + glider: {} + plane: {} + AnimalBodyCondEnum: + description: Permissible values, used by term animal_body_cond + permissible_values: + normal: {} + over conditioned: {} + under conditioned: {} + AnimalSexEnum: + description: Permissible values, used by term animal_sex + permissible_values: + castrated female: {} + castrated male: {} + intact female: {} + intact male: {} + ArchStrucEnum: + description: Permissible values, used by term arch_struc + permissible_values: + building: {} + home: {} + shed: {} + BinParamEnum: + description: Permissible values, used by term bin_param + permissible_values: + codon usage: {} + combination: {} + coverage: {} + homology search: {} + kmer: {} + BioticRelationshipEnum: + description: Permissible values, used by term biotic_relationship + permissible_values: + commensalism: {} + free living: {} + mutualism: {} + parasitism: {} + symbiotic: {} + BuildingSettingEnum: + description: Permissible values, used by term building_setting + permissible_values: + exurban: {} + rural: {} + suburban: {} + urban: {} + BuildDocsEnum: + description: Permissible values, used by term build_docs + permissible_values: + building information model: {} + commissioning report: {} + complaint logs: {} + contract administration: {} + cost estimate: {} + janitorial schedules or logs: {} + maintenance plans: {} + schedule: {} + sections: {} + shop drawings: {} + submittals: {} + ventilation system: {} + windows: {} + BuildOccupTypeEnum: + description: Permissible values, used by term build_occup_type + permissible_values: + airport: {} + commercial: {} + health care: {} + high rise: {} + low rise: {} + market: {} + office: {} + residence: {} + residential: {} + restaurant: {} + school: {} + sports complex: {} + wood framed: {} + BuiltStrucSetEnum: + description: Permissible values, used by term built_struc_set + permissible_values: + rural: {} + urban: {} + CeilFinishMatEnum: + description: Permissible values, used by term ceil_finish_mat + permissible_values: + PVC: {} + drywall: {} + fiberglass: {} + metal: {} + mineral fibre: {} + mineral wool/calcium silicate: {} + plasterboard: {} + stucco: {} + tiles: {} + wood: {} + CeilStrucEnum: + description: Permissible values, used by term ceil_struc + permissible_values: + concrete: {} + wood frame: {} + CeilTypeEnum: + description: Permissible values, used by term ceil_type + permissible_values: + barrel-shaped: {} + cathedral: {} + coffered: {} + concave: {} + cove: {} + dropped: {} + stretched: {} + ComplApprEnum: + description: Permissible values, used by term compl_appr + permissible_values: + marker gene: {} + other: {} + reference based: {} + ContamScreenInputEnum: + description: Permissible values, used by term contam_screen_input + permissible_values: + contigs: {} + reads: {} + CultResultEnum: + description: Permissible values, used by term cult_result + permissible_values: + absent: {} + active: {} + inactive: {} + negative: {} + 'no': {} + positive: {} + present: {} + 'yes': {} + DeposEnvEnum: + description: Permissible values, used by term depos_env + permissible_values: + Continental - Aeolian: {} + Continental - Alluvial: {} + Continental - Fluvial: {} + Continental - Lacustrine: {} + Marine - Deep: {} + Marine - Reef: {} + Marine - Shallow: {} + Other - Evaporite: {} + Other - Glacial: {} + Other - Volcanic: {} + Transitional - Beach: {} + Transitional - Deltaic: {} + Transitional - Lagoonal: {} + Transitional - Lake: {} + Transitional - Tidal: {} + other: {} + DominantHandEnum: + description: Permissible values, used by term dominant_hand + permissible_values: + ambidextrous: {} + left: {} + right: {} + DoorCompTypeEnum: + description: Permissible values, used by term door_comp_type + permissible_values: + metal covered: {} + revolving: {} + sliding: {} + telescopic: {} + DoorDirectEnum: + description: Permissible values, used by term door_direct + permissible_values: + inward: {} + outward: {} + sideways: {} + DoorMatEnum: + description: Permissible values, used by term door_mat + permissible_values: + aluminum: {} + cellular PVC: {} + engineered plastic: {} + fiberboard: {} + fiberglass: {} + metal: {} + thermoplastic alloy: {} + vinyl: {} + wood: {} + wood/plastic composite: {} + DoorMoveEnum: + description: Permissible values, used by term door_move + permissible_values: + collapsible: {} + folding: {} + revolving: {} + rolling shutter: {} + sliding: {} + swinging: {} + DoorTypeEnum: + description: Permissible values, used by term door_type + permissible_values: + composite: {} + metal: {} + wooden: {} + DoorTypeMetalEnum: + description: Permissible values, used by term door_type_metal + permissible_values: + collapsible: {} + corrugated steel: {} + hollow: {} + rolling shutters: {} + steel plate: {} + DrainageClassEnum: + description: Permissible values, used by term drainage_class + permissible_values: + excessively drained: {} + moderately well: {} + poorly: {} + somewhat poorly: {} + very poorly: {} + well: {} + DrawingsEnum: + description: Permissible values, used by term drawings + permissible_values: + as built: {} + bid: {} + building navigation map: {} + construction: {} + design: {} + diagram: {} + operation: {} + sketch: {} + ExtrWeatherEventEnum: + description: Permissible values, used by term extr_weather_event + permissible_values: + drought: {} + dust storm: {} + extreme cold: {} + extreme heat: {} + flood: {} + frost: {} + hail: {} + high precipitation: {} + high winds: {} + FacilityTypeEnum: + description: Permissible values, used by term facility_type + permissible_values: + ambient storage: {} + caterer-catering point: {} + distribution: {} + frozen storage: {} + importer-broker: {} + interstate conveyance: {} + labeler-relabeler: {} + manufacturing-processing: {} + packaging: {} + refrigerated storage: {} + storage: {} + FaoClassEnum: + description: Permissible values, used by term fao_class + permissible_values: + Acrisols: {} + Alisols: {} + Andosols: {} + Anthrosols: {} + Arenosols: {} + Calcisols: {} + Cambisols: {} + Chernozems: {} + Cryosols: {} + Durisols: {} + Ferralsols: {} + Fluvisols: {} + Gleysols: {} + Greyzems: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Gypsisols: {} + Histosols: {} + Kastanozems: {} + Lithosols: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Leptosols: {} + Lixisols: {} + Luvisols: {} + Nitosols: {} + Phaeozems: {} + Planosols: {} + Plinthosols: {} + Podzols: {} + Podzoluvisols: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Rankers: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Regosols: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Rendzinas: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + Solonchaks: {} + Solonetz: {} + Stagnosols: {} + Technosols: {} + Umbrisols: {} + Vertisols: {} + Yermosols: + deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 + FarmWaterSourceEnum: + description: Permissible values, used by term farm_water_source + permissible_values: + brackish: {} + canal: {} + collected rainwater: {} + ditch: {} + estuary: {} + freshwater: {} + lake: {} + manmade: {} + melt pond: {} + municipal: {} + natural: {} + pond: {} + reservior: {} + river: {} + saline: {} + storage tank: {} + stream: {} + well: {} + FilterTypeEnum: + description: Permissible values, used by term filter_type + permissible_values: + HEPA: {} + chemical air filter: {} + electrostatic: {} + gas-phase or ultraviolet air treatments: {} + low-MERV pleated media: {} + particulate air filter: {} + FireplaceTypeEnum: + description: Permissible values, used by term fireplace_type + permissible_values: + gas burning: {} + wood burning: {} + FloorStrucEnum: + description: Permissible values, used by term floor_struc + permissible_values: + balcony: {} + concrete: {} + floating floor: {} + glass floor: {} + raised floor: {} + sprung floor: {} + wood-framed: {} + FloorWaterMoldEnum: + description: Permissible values, used by term floor_water_mold + permissible_values: + bulging walls: {} + ceiling discoloration: {} + condensation: {} + floor discoloration: {} + mold odor: {} + peeling paint or wallpaper: {} + wall discoloration: {} + water stains: {} + wet floor: {} + FoodCleanProcEnum: + description: Permissible values, used by term food_clean_proc + permissible_values: + drum and drain: {} + manual spinner: {} + rinsed with sanitizer solution: {} + rinsed with water: {} + scrubbed with brush: {} + scrubbed with hand: {} + soaking: {} + FoodTraceListEnum: + description: Permissible values, used by term food_trace_list + permissible_values: + cheeses-other than hard cheeses: {} + crustaceans: {} + cucumbers: {} + finfish-including smoked finfish: {} + fruits and vegetables-fresh cut: {} + herbs-fresh: {} + leafy greens-including fresh cut leafy greens: {} + melons: {} + mollusks-bivalves: {} + nut butter: {} + peppers: {} + ready to eat deli salads: {} + shell eggs: {} + sprouts: {} + tomatoes: {} + tropical tree fruits: {} + FreqCleanEnum: + description: Permissible values, used by term freq_clean + permissible_values: + Annually: {} + Daily: {} + Monthly: {} + Quarterly: {} + Weekly: {} + other: {} + FurnitureEnum: + description: Permissible values, used by term furniture + permissible_values: + cabinet: {} + chair: {} + desks: {} + GenderRestroomEnum: + description: Permissible values, used by term gender_restroom + permissible_values: + all gender: {} + female: {} + gender neutral: {} + male: {} + male and female: {} + unisex: {} + GrowthHabitEnum: + description: Permissible values, used by term growth_habit + permissible_values: + erect: {} + prostrate: {} + semi-erect: {} + spreading: {} + HandidnessEnum: + description: Permissible values, used by term handidness + permissible_values: + ambidexterity: {} + left handedness: {} + mixed-handedness: {} + right handedness: {} + HcrEnum: + description: Permissible values, used by term hcr + permissible_values: + Coalbed: {} + Gas Reservoir: {} + Oil Reservoir: {} + Oil Sand: {} + Shale: {} + Tight Gas Reservoir: {} + Tight Oil Reservoir: {} + other: {} + HcProducedEnum: + description: Permissible values, used by term hc_produced + permissible_values: + Bitumen: {} + Coalbed Methane: {} + Gas: {} + Gas-Condensate: {} + Oil: {} + other: {} + HeatCoolTypeEnum: + description: Permissible values, used by term heat_cool_type + permissible_values: + forced air system: {} + heat pump: {} + radiant system: {} + steam forced heat: {} + wood stove: {} + HeatSysDelivMethEnum: + description: Permissible values, used by term heat_sys_deliv_meth + permissible_values: + conductive: {} + radiant: {} + HostCellularLocEnum: + description: Permissible values, used by term host_cellular_loc + permissible_values: + extracellular: {} + intracellular: {} + not determined: {} + HostDependenceEnum: + description: Permissible values, used by term host_dependence + permissible_values: + facultative: {} + obligate: {} + HostPredApprEnum: + description: Permissible values, used by term host_pred_appr + permissible_values: + CRISPR spacer match: {} + co-occurrence: {} + combination: {} + host sequence similarity: {} + kmer similarity: {} + other: {} + provirus: {} + HostSpecificityEnum: + description: Permissible values, used by term host_specificity + permissible_values: + family-specific: {} + generalist: {} + genus-specific: {} + species-specific: {} + IndoorSpaceEnum: + description: Permissible values, used by term indoor_space + permissible_values: + bathroom: {} + bedroom: {} + elevator: {} + foyer: {} + hallway: {} + kitchen: {} + locker room: {} + office: {} + IndoorSurfEnum: + description: Permissible values, used by term indoor_surf + permissible_values: + cabinet: {} + ceiling: {} + counter top: {} + door: {} + shelving: {} + vent cover: {} + wall: {} + window: {} + LibLayoutEnum: + description: Permissible values, used by term lib_layout + permissible_values: + other: {} + paired: {} + single: {} + vector: {} + LightTypeEnum: + description: Permissible values, used by term light_type + permissible_values: + desk lamp: {} + electric light: {} + fluorescent lights: {} + natural light: {} + none: {} + LithologyEnum: + description: Permissible values, used by term lithology + permissible_values: + Basement: {} + Chalk: {} + Chert: {} + Coal: {} + Conglomerate: {} + Diatomite: {} + Dolomite: {} + Limestone: {} + Sandstone: {} + Shale: {} + Siltstone: {} + Volcanic: {} + other: {} + MagCovSoftwareEnum: + description: Permissible values, used by term mag_cov_software + permissible_values: + bbmap: {} + bowtie: {} + bwa: {} + other: {} + MechStrucEnum: + description: Permissible values, used by term mech_struc + permissible_values: + boat: {} + bus: {} + car: {} + carriage: {} + coach: {} + elevator: {} + escalator: {} + subway: {} + train: {} + ModeTransmissionEnum: + description: Permissible values, used by term mode_transmission + permissible_values: + horizontal:castrator: {} + horizontal:directly transmitted: {} + horizontal:micropredator: {} + horizontal:parasitoid: {} + horizontal:trophically transmitted: {} + horizontal:vector transmitted: {} + vertical: {} + NegContTypeEnum: + description: Permissible values, used by term neg_cont_type + permissible_values: + DNA-free PCR mix: {} + distilled water: {} + empty collection device: {} + empty collection tube: {} + phosphate buffer: {} + sterile swab: {} + sterile syringe: {} + OccupDocumentEnum: + description: Permissible values, used by term occup_document + permissible_values: + automated count: {} + estimate: {} + manual count: {} + videos: {} + OxyStatSampEnum: + description: Permissible values, used by term oxy_stat_samp + permissible_values: + aerobic: {} + anaerobic: {} + other: {} + PlantReprodCropEnum: + description: Permissible values, used by term plant_reprod_crop + permissible_values: + plant cutting: {} + pregerminated seed: {} + ratoon: {} + seed: {} + seedling: {} + whole mature plant: {} + PlantSexEnum: + description: Permissible values, used by term plant_sex + permissible_values: + Androdioecious: {} + Androecious: {} + Androgynomonoecious: {} + Androgynous: {} + Andromonoecious: {} + Bisexual: {} + Dichogamous: {} + Diclinous: {} + Dioecious: {} + Gynodioecious: {} + Gynoecious: {} + Gynomonoecious: {} + Hermaphroditic: {} + Imperfect: {} + Monoclinous: {} + Monoecious: {} + Perfect: {} + Polygamodioecious: {} + Polygamomonoecious: {} + Polygamous: {} + Protandrous: {} + Protogynous: {} + Subandroecious: {} + Subdioecious: {} + Subgynoecious: {} + Synoecious: {} + Trimonoecious: {} + Trioecious: {} + Unisexual: {} + PredGenomeStrucEnum: + description: Permissible values, used by term pred_genome_struc + permissible_values: + non-segmented: {} + segmented: {} + undetermined: {} + ProfilePositionEnum: + description: Permissible values, used by term profile_position + permissible_values: + backslope: {} + footslope: {} + shoulder: {} + summit: {} + toeslope: {} + QuadPosEnum: + description: Permissible values, used by term quad_pos + permissible_values: + East side: {} + North side: {} + South side: {} + West side: {} + RelSampLocEnum: + description: Permissible values, used by term rel_samp_loc + permissible_values: + center of car: {} + edge of car: {} + under a seat: {} + RelToOxygenEnum: + description: Permissible values, used by term rel_to_oxygen + permissible_values: + aerobe: {} + anaerobe: {} + facultative: {} + microaerophilic: {} + microanaerobe: {} + obligate aerobe: {} + obligate anaerobe: {} + RoomCondtEnum: + description: Permissible values, used by term room_condt + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible signs of mold/mildew: {} + visible wear: {} + RoomConnectedEnum: + description: Permissible values, used by term room_connected + permissible_values: + attic: {} + bathroom: {} + closet: {} + conference room: {} + elevator: {} + examining room: {} + hallway: {} + kitchen: {} + mail room: {} + office: {} + stairwell: {} + RoomLocEnum: + description: Permissible values, used by term room_loc + permissible_values: + corner room: {} + exterior wall: {} + interior room: {} + RoomSampPosEnum: + description: Permissible values, used by term room_samp_pos + permissible_values: + center: {} + east corner: {} + north corner: {} + northeast corner: {} + northwest corner: {} + south corner: {} + southeast corner: {} + southwest corner: {} + west corner: {} + RouteTransmissionEnum: + description: Permissible values, used by term route_transmission + permissible_values: + environmental:faecal-oral: {} + transplacental: {} + vector-borne:vector penetration: {} + SampCaptStatusEnum: + description: Permissible values, used by term samp_capt_status + permissible_values: + active surveillance in response to an outbreak: {} + active surveillance not initiated by an outbreak: {} + farm sample: {} + market sample: {} + other: {} + SampCollectPointEnum: + description: Permissible values, used by term samp_collect_point + permissible_values: + drilling rig: {} + other: {} + separator: {} + storage tank: {} + test well: {} + well: {} + wellhead: {} + SampDisStageEnum: + description: Permissible values, used by term samp_dis_stage + permissible_values: + dissemination: {} + growth and reproduction: {} + infection: {} + inoculation: {} + other: {} + penetration: {} + SampLocConditionEnum: + description: Permissible values, used by term samp_loc_condition + permissible_values: + damaged: {} + new: {} + rupture: {} + visible signs of mold-mildew: {} + visible weariness repair: {} + SampSubtypeEnum: + description: Permissible values, used by term samp_subtype + permissible_values: + biofilm: {} + not applicable: {} + oil phase: {} + other: {} + water phase: {} + SampSurfMoistureEnum: + description: Permissible values, used by term samp_surf_moisture + permissible_values: + intermittent moisture: {} + not present: {} + submerged: {} + SampTransportContEnum: + description: Permissible values, used by term samp_transport_cont + permissible_values: + bottle: {} + cooler: {} + glass vial: {} + plastic vial: {} + vendor supplied container: {} + SampWeatherEnum: + description: Permissible values, used by term samp_weather + permissible_values: + clear sky: {} + cloudy: {} + foggy: {} + hail: {} + rain: {} + sleet: {} + snow: {} + sunny: {} + windy: {} + ScLysisApproachEnum: + description: Permissible values, used by term sc_lysis_approach + permissible_values: + chemical: {} + combination: {} + enzymatic: {} + physical: {} + SeasonUseEnum: + description: Permissible values, used by term season_use + permissible_values: + Fall: {} + Spring: {} + Summer: {} + Winter: {} + SedimentTypeEnum: + description: Permissible values, used by term sediment_type + permissible_values: + biogenous: {} + cosmogenous: {} + hydrogenous: {} + lithogenous: {} + SeqQualityCheckEnum: + description: Permissible values, used by term seq_quality_check + permissible_values: + manually edited: {} + none: {} + ShadingDeviceLocEnum: + description: Permissible values, used by term shading_device_loc + permissible_values: + exterior: {} + interior: {} + ShadingDeviceTypeEnum: + description: Permissible values, used by term shading_device_type + permissible_values: + bahama shutters: {} + exterior roll blind: {} + gambrel awning: {} + hood awning: {} + porchroller awning: {} + sarasota shutters: {} + slatted aluminum: {} + solid aluminum awning: {} + sun screen: {} + tree: {} + trellis: {} + venetian awning: {} + CompassDirections8Enum: + description: 'Permissible values, used by 6 terms: door_loc, ext_wall_orient, + ext_window_orient, heat_deliv_loc, wall_loc, window_loc' + permissible_values: + east: {} + north: {} + northeast: {} + northwest: {} + south: {} + southeast: {} + southwest: {} + west: {} + MoldVisibilityEnum: + description: 'Permissible values, used by 5 terms: ceil_water_mold, door_water_mold, + shad_dev_water_mold, wall_water_mold, window_water_mold' + permissible_values: + no presence of mold visible: {} + presence of mold visible: {} + DamagedRupturedEnum: + description: 'Permissible values, used by 3 terms: door_cond, shading_device_cond, + window_cond' + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + DamagedEnum: + description: 'Permissible values, used by 3 terms: ceil_cond, floor_cond, int_wall_cond' + permissible_values: + damaged: {} + needs repair: {} + new: {} + rupture: {} + visible wear: {} + CeilingWallTextureEnum: + description: 'Permissible values, used by 2 terms: ceil_texture, wall_texture' + permissible_values: + Santa-Fe texture: {} + crows feet: {} + crows-foot stomp: {} + double skip: {} + hawk and trowel: {} + knockdown: {} + orange peel: {} + popcorn: {} + rosebud stomp: {} + skip trowel: {} + smooth: {} + stomp knockdown: {} + swirl: {} + GeolAgeEnum: + description: 'Permissible values, used by 2 terms: hcr_geol_age, sr_geol_age' + permissible_values: + Archean: {} + Cambrian: {} + Carboniferous: {} + Cenozoic: {} + Cretaceous: {} + Devonian: {} + Jurassic: {} + Mesozoic: {} + Neogene: {} + Ordovician: {} + Paleogene: {} + Paleozoic: {} + Permian: {} + Precambrian: {} + Proterozoic: {} + Silurian: {} + Triassic: {} + other: {} + SoilHorizonEnum: + description: Permissible values, used by term soil_horizon + permissible_values: + A horizon: {} + B horizon: {} + C horizon: {} + E horizon: {} + O horizon: {} + Permafrost: {} + R layer: {} + SoilTextureClassEnum: + description: Permissible values, used by term soil_texture_class + permissible_values: + clay: {} + clay loam: {} + loam: {} + loamy sand: {} + sand: {} + sandy clay: {} + sandy clay loam: {} + sandy loam: {} + silt: {} + silt loam: {} + silty clay: {} + silty clay loam: {} + SortTechEnum: + description: Permissible values, used by term sort_tech + permissible_values: + flow cytometric cell sorting: {} + lazer-tweezing: {} + microfluidics: {} + micromanipulation: {} + optical manipulation: {} + other: {} + SpaceTypStateEnum: + description: Permissible values, used by term space_typ_state + permissible_values: + typically occupied: {} + typically unoccupied: {} + SpecificEnum: + description: Permissible values, used by term specific + permissible_values: + as built: {} + bid: {} + construction: {} + design: {} + operation: {} + photos: {} + SrDepEnvEnum: + description: Permissible values, used by term sr_dep_env + permissible_values: + Fluvioldeltaic: {} + Fluviomarine: {} + Lacustine: {} + Marine: {} + other: {} + SrKerogTypeEnum: + description: Permissible values, used by term sr_kerog_type + permissible_values: + Type I: {} + Type II: {} + Type III: {} + Type IV: {} + other: {} + SrLithologyEnum: + description: Permissible values, used by term sr_lithology + permissible_values: + Biosilicieous: {} + Carbonate: {} + Clastic: {} + Coal: {} + other: {} + SubstructureTypeEnum: + description: Permissible values, used by term substructure_type + permissible_values: + basement: {} + crawlspace: {} + slab on grade: {} + SurfAirContEnum: + description: Permissible values, used by term surf_air_cont + permissible_values: + biocides: {} + biological contaminants: {} + dust: {} + nutrients: {} + organic matter: {} + particulate matter: {} + radon: {} + volatile organic compounds: {} + SurfMaterialEnum: + description: Permissible values, used by term surf_material + permissible_values: + adobe: {} + carpet: {} + cinder blocks: {} + concrete: {} + glass: {} + hay bales: {} + metal: {} + paint: {} + plastic: {} + stainless steel: {} + stone: {} + stucco: {} + tile: {} + vinyl: {} + wood: {} + SymbiontHostRoleEnum: + description: Permissible values, used by term symbiont_host_role + permissible_values: + accidental: {} + dead-end: {} + definitive: {} + intermediate: {} + paratenic: {} + reservoir: {} + single host: {} + SymLifeCycleTypeEnum: + description: Permissible values, used by term sym_life_cycle_type + permissible_values: + complex life cycle: {} + simple life cycle: {} + TaxIdentEnum: + description: Permissible values, used by term tax_ident + permissible_values: + 16S rRNA gene: {} + multi-marker approach: {} + other: {} + TidalStageEnum: + description: Permissible values, used by term tidal_stage + permissible_values: + ebb tide: {} + flood tide: {} + high tide: {} + low tide: {} + TillageEnum: + description: Permissible values, used by term tillage + permissible_values: + chisel: {} + cutting disc: {} + disc plough: {} + drill: {} + mouldboard: {} + ridge till: {} + strip tillage: {} + tined: {} + zonal tillage: {} + TrainLineEnum: + description: Permissible values, used by term train_line + permissible_values: + green: {} + orange: {} + red: {} + TrainStatLocEnum: + description: Permissible values, used by term train_stat_loc + permissible_values: + forest hills: {} + riverside: {} + south station above ground: {} + south station amtrak: {} + south station underground: {} + TrainStopLocEnum: + description: Permissible values, used by term train_stop_loc + permissible_values: + downtown: {} + end: {} + mid: {} + TrophicLevelEnum: + description: Permissible values, used by term trophic_level + permissible_values: + autotroph: {} + carboxydotroph: {} + chemoautolithotroph: {} + chemoautotroph: {} + chemoheterotroph: {} + chemolithoautotroph: {} + chemolithotroph: {} + chemoorganoheterotroph: {} + chemoorganotroph: {} + chemosynthetic: {} + chemotroph: {} + copiotroph: {} + diazotroph: {} + facultative: {} + heterotroph: {} + lithoautotroph: {} + lithoheterotroph: {} + lithotroph: {} + methanotroph: {} + methylotroph: {} + mixotroph: {} + obligate: {} + oligotroph: {} + organoheterotroph: {} + organotroph: {} + photoautotroph: {} + photoheterotroph: {} + photolithoautotroph: {} + photolithotroph: {} + photosynthetic: {} + phototroph: {} + TypeOfSymbiosisEnum: + description: Permissible values, used by term type_of_symbiosis + permissible_values: + commensalistic: {} + mutualistic: {} + parasitic: {} + UrineCollectMethEnum: + description: Permissible values, used by term urine_collect_meth + permissible_values: + catheter: {} + clean catch: {} + UrobiomSexEnum: + description: Permissible values, used by term urobiom_sex + permissible_values: + female: {} + hermaphrodite: {} + male: {} + neuter: {} + VirusEnrichApprEnum: + description: Permissible values, used by term virus_enrich_appr + permissible_values: + CsCl density gradient: {} + DNAse: {} + FeCl Precipitation: {} + PEG Precipitation: {} + RNAse: {} + centrifugation: {} + filtration: {} + none: {} + other: {} + targeted sequence capture: {} + ultracentrifugation: {} + ultrafiltration: {} + WallConstTypeEnum: + description: Permissible values, used by term wall_const_type + permissible_values: + fire resistive: {} + frame construction: {} + joisted masonry: {} + light noncombustible: {} + masonry noncombustible: {} + modified fire resistive: {} + WallFinishMatEnum: + description: Permissible values, used by term wall_finish_mat + permissible_values: + acoustical treatment: {} + gypsum board: {} + gypsum plaster: {} + masonry: {} + metal: {} + plaster: {} + stone facing: {} + terrazzo: {} + tile: {} + veneer plaster: {} + wood: {} + WallSurfTreatmentEnum: + description: Permissible values, used by term wall_surf_treatment + permissible_values: + fabric: {} + no treatment: {} + painted: {} + paneling: {} + stucco: {} + wall paper: {} + WaterFeatTypeEnum: + description: Permissible values, used by term water_feat_type + permissible_values: + fountain: {} + pool: {} + standing feature: {} + stream: {} + waterfall: {} + WeekdayEnum: + description: Permissible values, used by term weekday + permissible_values: + Friday: {} + Monday: {} + Saturday: {} + Sunday: {} + Thursday: {} + Tuesday: {} + Wednesday: {} + WgaAmpApprEnum: + description: Permissible values, used by term wga_amp_appr + permissible_values: + mda based: {} + pcr based: {} + WindowCoverEnum: + description: Permissible values, used by term window_cover + permissible_values: + blinds: {} + curtains: {} + none: {} + WindowHorizPosEnum: + description: Permissible values, used by term window_horiz_pos + permissible_values: + left: {} + middle: {} + right: {} + WindowMatEnum: + description: Permissible values, used by term window_mat + permissible_values: + clad: {} + fiberglass: {} + metal: {} + vinyl: {} + wood: {} + WindowStatusEnum: + description: Permissible values, used by term window_status + permissible_values: + closed: {} + open: {} + WindowTypeEnum: + description: Permissible values, used by term window_type + permissible_values: + fixed window: {} + horizontal sash window: {} + single-hung sash window: {} + WindowVertPosEnum: + description: Permissible values, used by term window_vert_pos + permissible_values: + bottom: {} + high: {} + low: {} + middle: {} + top: {} +slots: + migs_ba_data: + description: Data that comply with checklist MigsBa + title: MigsBa data + slot_uri: MIXS:migs_ba_data + range: MigsBa + multivalued: true + inlined: true + inlined_as_list: true + agriculture_data: + description: Data that comply with Extension Agriculture + title: Agriculture data + slot_uri: MIXS:agriculture_data + range: Agriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_agriculture_data: + description: Data that comply with MigsBa combined with Agriculture + title: MigsBaAgriculture data + slot_uri: MIXS:migs_ba_agriculture_data + range: MigsBaAgriculture + multivalued: true + inlined: true + inlined_as_list: true + air_data: + description: Data that comply with Extension Air + title: Air data + keywords: + - air + slot_uri: MIXS:air_data + range: Air + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_air_data: + description: Data that comply with MigsBa combined with Air + title: MigsBaAir data + slot_uri: MIXS:migs_ba_air_data + range: MigsBaAir + multivalued: true + inlined: true + inlined_as_list: true + built_environment_data: + description: Data that comply with Extension BuiltEnvironment + title: BuiltEnvironment data + slot_uri: MIXS:built_environment_data + range: BuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_built_environment_data: + description: Data that comply with MigsBa combined with BuiltEnvironment + title: MigsBaBuiltEnvironment data + slot_uri: MIXS:migs_ba_built_environment_data + range: MigsBaBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + food_animal_and_animal_feed_data: + description: Data that comply with Extension FoodAnimalAndAnimalFeed + title: FoodAnimalAndAnimalFeed data + slot_uri: MIXS:food_animal_and_animal_feed_data + range: FoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_animal_and_animal_feed_data: + description: Data that comply with MigsBa combined with FoodAnimalAndAnimalFeed + title: MigsBaFoodAnimalAndAnimalFeed data + slot_uri: MIXS:migs_ba_food_animal_and_animal_feed_data + range: MigsBaFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + food_farm_environment_data: + description: Data that comply with Extension FoodFarmEnvironment + title: FoodFarmEnvironment data + slot_uri: MIXS:food_farm_environment_data + range: FoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_farm_environment_data: + description: Data that comply with MigsBa combined with FoodFarmEnvironment + title: MigsBaFoodFarmEnvironment data + slot_uri: MIXS:migs_ba_food_farm_environment_data + range: MigsBaFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + food_food_production_facility_data: + description: Data that comply with Extension FoodFoodProductionFacility + title: FoodFoodProductionFacility data + slot_uri: MIXS:food_food_production_facility_data + range: FoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_food_production_facility_data: + description: Data that comply with MigsBa combined with FoodFoodProductionFacility + title: MigsBaFoodFoodProductionFacility data + slot_uri: MIXS:migs_ba_food_food_production_facility_data + range: MigsBaFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + food_human_foods_data: + description: Data that comply with Extension FoodHumanFoods + title: FoodHumanFoods data + slot_uri: MIXS:food_human_foods_data + range: FoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_food_human_foods_data: + description: Data that comply with MigsBa combined with FoodHumanFoods + title: MigsBaFoodHumanFoods data + slot_uri: MIXS:migs_ba_food_human_foods_data + range: MigsBaFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + host_associated_data: + description: Data that comply with Extension HostAssociated + title: HostAssociated data + slot_uri: MIXS:host_associated_data + range: HostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_host_associated_data: + description: Data that comply with MigsBa combined with HostAssociated + title: MigsBaHostAssociated data + slot_uri: MIXS:migs_ba_host_associated_data + range: MigsBaHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + human_associated_data: + description: Data that comply with Extension HumanAssociated + title: HumanAssociated data + slot_uri: MIXS:human_associated_data + range: HumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_associated_data: + description: Data that comply with MigsBa combined with HumanAssociated + title: MigsBaHumanAssociated data + slot_uri: MIXS:migs_ba_human_associated_data + range: MigsBaHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + human_gut_data: + description: Data that comply with Extension HumanGut + title: HumanGut data + slot_uri: MIXS:human_gut_data + range: HumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_gut_data: + description: Data that comply with MigsBa combined with HumanGut + title: MigsBaHumanGut data + slot_uri: MIXS:migs_ba_human_gut_data + range: MigsBaHumanGut + multivalued: true + inlined: true + inlined_as_list: true + human_oral_data: + description: Data that comply with Extension HumanOral + title: HumanOral data + slot_uri: MIXS:human_oral_data + range: HumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_oral_data: + description: Data that comply with MigsBa combined with HumanOral + title: MigsBaHumanOral data + slot_uri: MIXS:migs_ba_human_oral_data + range: MigsBaHumanOral + multivalued: true + inlined: true + inlined_as_list: true + human_skin_data: + description: Data that comply with Extension HumanSkin + title: HumanSkin data + slot_uri: MIXS:human_skin_data + range: HumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_skin_data: + description: Data that comply with MigsBa combined with HumanSkin + title: MigsBaHumanSkin data + slot_uri: MIXS:migs_ba_human_skin_data + range: MigsBaHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + human_vaginal_data: + description: Data that comply with Extension HumanVaginal + title: HumanVaginal data + slot_uri: MIXS:human_vaginal_data + range: HumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_human_vaginal_data: + description: Data that comply with MigsBa combined with HumanVaginal + title: MigsBaHumanVaginal data + slot_uri: MIXS:migs_ba_human_vaginal_data + range: MigsBaHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + hydrocarbon_resources_cores_data: + description: Data that comply with Extension HydrocarbonResourcesCores + title: HydrocarbonResourcesCores data + slot_uri: MIXS:hydrocarbon_resources_cores_data + range: HydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_hydrocarbon_resources_cores_data: + description: Data that comply with MigsBa combined with HydrocarbonResourcesCores + title: MigsBaHydrocarbonResourcesCores data + slot_uri: MIXS:migs_ba_hydrocarbon_resources_cores_data + range: MigsBaHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with Extension HydrocarbonResourcesFluidsSwabs + title: HydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:hydrocarbon_resources_fluids_swabs_data + range: HydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MigsBa combined with HydrocarbonResourcesFluidsSwabs + title: MigsBaHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:migs_ba_hydrocarbon_resources_fluids_swabs_data + range: MigsBaHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + microbial_mat_biofilm_data: + description: Data that comply with Extension MicrobialMatBiofilm + title: MicrobialMatBiofilm data + slot_uri: MIXS:microbial_mat_biofilm_data + range: MicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_microbial_mat_biofilm_data: + description: Data that comply with MigsBa combined with MicrobialMatBiofilm + title: MigsBaMicrobialMatBiofilm data + slot_uri: MIXS:migs_ba_microbial_mat_biofilm_data + range: MigsBaMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with Extension MiscellaneousNaturalOrArtificialEnvironment + title: MiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:miscellaneous_natural_or_artificial_environment_data + range: MiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsBaMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:migs_ba_miscellaneous_natural_or_artificial_environment_data + range: MigsBaMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + plant_associated_data: + description: Data that comply with Extension PlantAssociated + title: PlantAssociated data + slot_uri: MIXS:plant_associated_data + range: PlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_plant_associated_data: + description: Data that comply with MigsBa combined with PlantAssociated + title: MigsBaPlantAssociated data + slot_uri: MIXS:migs_ba_plant_associated_data + range: MigsBaPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + sediment_data: + description: Data that comply with Extension Sediment + title: Sediment data + keywords: + - sediment + slot_uri: MIXS:sediment_data + range: Sediment + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_sediment_data: + description: Data that comply with MigsBa combined with Sediment + title: MigsBaSediment data + slot_uri: MIXS:migs_ba_sediment_data + range: MigsBaSediment + multivalued: true + inlined: true + inlined_as_list: true + soil_data: + description: Data that comply with Extension Soil + title: Soil data + keywords: + - soil + slot_uri: MIXS:soil_data + range: Soil + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_soil_data: + description: Data that comply with MigsBa combined with Soil + title: MigsBaSoil data + slot_uri: MIXS:migs_ba_soil_data + range: MigsBaSoil + multivalued: true + inlined: true + inlined_as_list: true + symbiont_associated_data: + description: Data that comply with Extension SymbiontAssociated + title: SymbiontAssociated data + slot_uri: MIXS:symbiont_associated_data + range: SymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_symbiont_associated_data: + description: Data that comply with MigsBa combined with SymbiontAssociated + title: MigsBaSymbiontAssociated data + slot_uri: MIXS:migs_ba_symbiont_associated_data + range: MigsBaSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + wastewater_sludge_data: + description: Data that comply with Extension WastewaterSludge + title: WastewaterSludge data + slot_uri: MIXS:wastewater_sludge_data + range: WastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_wastewater_sludge_data: + description: Data that comply with MigsBa combined with WastewaterSludge + title: MigsBaWastewaterSludge data + slot_uri: MIXS:migs_ba_wastewater_sludge_data + range: MigsBaWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + water_data: + description: Data that comply with Extension Water + title: Water data + keywords: + - water + slot_uri: MIXS:water_data + range: Water + multivalued: true + inlined: true + inlined_as_list: true + migs_ba_water_data: + description: Data that comply with MigsBa combined with Water + title: MigsBaWater data + slot_uri: MIXS:migs_ba_water_data + range: MigsBaWater + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_data: + description: Data that comply with checklist MigsEu + title: MigsEu data + slot_uri: MIXS:migs_eu_data + range: MigsEu + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_agriculture_data: + description: Data that comply with MigsEu combined with Agriculture + title: MigsEuAgriculture data + slot_uri: MIXS:migs_eu_agriculture_data + range: MigsEuAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_air_data: + description: Data that comply with MigsEu combined with Air + title: MigsEuAir data + slot_uri: MIXS:migs_eu_air_data + range: MigsEuAir + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_built_environment_data: + description: Data that comply with MigsEu combined with BuiltEnvironment + title: MigsEuBuiltEnvironment data + slot_uri: MIXS:migs_eu_built_environment_data + range: MigsEuBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_animal_and_animal_feed_data: + description: Data that comply with MigsEu combined with FoodAnimalAndAnimalFeed + title: MigsEuFoodAnimalAndAnimalFeed data + slot_uri: MIXS:migs_eu_food_animal_and_animal_feed_data + range: MigsEuFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_farm_environment_data: + description: Data that comply with MigsEu combined with FoodFarmEnvironment + title: MigsEuFoodFarmEnvironment data + slot_uri: MIXS:migs_eu_food_farm_environment_data + range: MigsEuFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_food_production_facility_data: + description: Data that comply with MigsEu combined with FoodFoodProductionFacility + title: MigsEuFoodFoodProductionFacility data + slot_uri: MIXS:migs_eu_food_food_production_facility_data + range: MigsEuFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_food_human_foods_data: + description: Data that comply with MigsEu combined with FoodHumanFoods + title: MigsEuFoodHumanFoods data + slot_uri: MIXS:migs_eu_food_human_foods_data + range: MigsEuFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_host_associated_data: + description: Data that comply with MigsEu combined with HostAssociated + title: MigsEuHostAssociated data + slot_uri: MIXS:migs_eu_host_associated_data + range: MigsEuHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_associated_data: + description: Data that comply with MigsEu combined with HumanAssociated + title: MigsEuHumanAssociated data + slot_uri: MIXS:migs_eu_human_associated_data + range: MigsEuHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_gut_data: + description: Data that comply with MigsEu combined with HumanGut + title: MigsEuHumanGut data + slot_uri: MIXS:migs_eu_human_gut_data + range: MigsEuHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_oral_data: + description: Data that comply with MigsEu combined with HumanOral + title: MigsEuHumanOral data + slot_uri: MIXS:migs_eu_human_oral_data + range: MigsEuHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_skin_data: + description: Data that comply with MigsEu combined with HumanSkin + title: MigsEuHumanSkin data + slot_uri: MIXS:migs_eu_human_skin_data + range: MigsEuHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_human_vaginal_data: + description: Data that comply with MigsEu combined with HumanVaginal + title: MigsEuHumanVaginal data + slot_uri: MIXS:migs_eu_human_vaginal_data + range: MigsEuHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_hydrocarbon_resources_cores_data: + description: Data that comply with MigsEu combined with HydrocarbonResourcesCores + title: MigsEuHydrocarbonResourcesCores data + slot_uri: MIXS:migs_eu_hydrocarbon_resources_cores_data + range: MigsEuHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MigsEu combined with HydrocarbonResourcesFluidsSwabs + title: MigsEuHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:migs_eu_hydrocarbon_resources_fluids_swabs_data + range: MigsEuHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_microbial_mat_biofilm_data: + description: Data that comply with MigsEu combined with MicrobialMatBiofilm + title: MigsEuMicrobialMatBiofilm data + slot_uri: MIXS:migs_eu_microbial_mat_biofilm_data + range: MigsEuMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsEuMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:migs_eu_miscellaneous_natural_or_artificial_environment_data + range: MigsEuMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_plant_associated_data: + description: Data that comply with MigsEu combined with PlantAssociated + title: MigsEuPlantAssociated data + slot_uri: MIXS:migs_eu_plant_associated_data + range: MigsEuPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_sediment_data: + description: Data that comply with MigsEu combined with Sediment + title: MigsEuSediment data + slot_uri: MIXS:migs_eu_sediment_data + range: MigsEuSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_soil_data: + description: Data that comply with MigsEu combined with Soil + title: MigsEuSoil data + slot_uri: MIXS:migs_eu_soil_data + range: MigsEuSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_symbiont_associated_data: + description: Data that comply with MigsEu combined with SymbiontAssociated + title: MigsEuSymbiontAssociated data + slot_uri: MIXS:migs_eu_symbiont_associated_data + range: MigsEuSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_wastewater_sludge_data: + description: Data that comply with MigsEu combined with WastewaterSludge + title: MigsEuWastewaterSludge data + slot_uri: MIXS:migs_eu_wastewater_sludge_data + range: MigsEuWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_eu_water_data: + description: Data that comply with MigsEu combined with Water + title: MigsEuWater data + slot_uri: MIXS:migs_eu_water_data + range: MigsEuWater + multivalued: true + inlined: true + inlined_as_list: true + migs_org_data: + description: Data that comply with checklist MigsOrg + title: MigsOrg data + slot_uri: MIXS:migs_org_data + range: MigsOrg + multivalued: true + inlined: true + inlined_as_list: true + migs_org_agriculture_data: + description: Data that comply with MigsOrg combined with Agriculture + title: MigsOrgAgriculture data + slot_uri: MIXS:migs_org_agriculture_data + range: MigsOrgAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_org_air_data: + description: Data that comply with MigsOrg combined with Air + title: MigsOrgAir data + slot_uri: MIXS:migs_org_air_data + range: MigsOrgAir + multivalued: true + inlined: true + inlined_as_list: true + migs_org_built_environment_data: + description: Data that comply with MigsOrg combined with BuiltEnvironment + title: MigsOrgBuiltEnvironment data + slot_uri: MIXS:migs_org_built_environment_data + range: MigsOrgBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_animal_and_animal_feed_data: + description: Data that comply with MigsOrg combined with FoodAnimalAndAnimalFeed + title: MigsOrgFoodAnimalAndAnimalFeed data + slot_uri: MIXS:migs_org_food_animal_and_animal_feed_data + range: MigsOrgFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_farm_environment_data: + description: Data that comply with MigsOrg combined with FoodFarmEnvironment + title: MigsOrgFoodFarmEnvironment data + slot_uri: MIXS:migs_org_food_farm_environment_data + range: MigsOrgFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_food_production_facility_data: + description: Data that comply with MigsOrg combined with FoodFoodProductionFacility + title: MigsOrgFoodFoodProductionFacility data + slot_uri: MIXS:migs_org_food_food_production_facility_data + range: MigsOrgFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_org_food_human_foods_data: + description: Data that comply with MigsOrg combined with FoodHumanFoods + title: MigsOrgFoodHumanFoods data + slot_uri: MIXS:migs_org_food_human_foods_data + range: MigsOrgFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_org_host_associated_data: + description: Data that comply with MigsOrg combined with HostAssociated + title: MigsOrgHostAssociated data + slot_uri: MIXS:migs_org_host_associated_data + range: MigsOrgHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_associated_data: + description: Data that comply with MigsOrg combined with HumanAssociated + title: MigsOrgHumanAssociated data + slot_uri: MIXS:migs_org_human_associated_data + range: MigsOrgHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_gut_data: + description: Data that comply with MigsOrg combined with HumanGut + title: MigsOrgHumanGut data + slot_uri: MIXS:migs_org_human_gut_data + range: MigsOrgHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_oral_data: + description: Data that comply with MigsOrg combined with HumanOral + title: MigsOrgHumanOral data + slot_uri: MIXS:migs_org_human_oral_data + range: MigsOrgHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_skin_data: + description: Data that comply with MigsOrg combined with HumanSkin + title: MigsOrgHumanSkin data + slot_uri: MIXS:migs_org_human_skin_data + range: MigsOrgHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_org_human_vaginal_data: + description: Data that comply with MigsOrg combined with HumanVaginal + title: MigsOrgHumanVaginal data + slot_uri: MIXS:migs_org_human_vaginal_data + range: MigsOrgHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_org_hydrocarbon_resources_cores_data: + description: Data that comply with MigsOrg combined with HydrocarbonResourcesCores + title: MigsOrgHydrocarbonResourcesCores data + slot_uri: MIXS:migs_org_hydrocarbon_resources_cores_data + range: MigsOrgHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_org_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MigsOrg combined with HydrocarbonResourcesFluidsSwabs + title: MigsOrgHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:migs_org_hydrocarbon_resources_fluids_swabs_data + range: MigsOrgHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_org_microbial_mat_biofilm_data: + description: Data that comply with MigsOrg combined with MicrobialMatBiofilm + title: MigsOrgMicrobialMatBiofilm data + slot_uri: MIXS:migs_org_microbial_mat_biofilm_data + range: MigsOrgMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_org_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsOrgMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:migs_org_miscellaneous_natural_or_artificial_environment_data + range: MigsOrgMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_plant_associated_data: + description: Data that comply with MigsOrg combined with PlantAssociated + title: MigsOrgPlantAssociated data + slot_uri: MIXS:migs_org_plant_associated_data + range: MigsOrgPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_sediment_data: + description: Data that comply with MigsOrg combined with Sediment + title: MigsOrgSediment data + slot_uri: MIXS:migs_org_sediment_data + range: MigsOrgSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_org_soil_data: + description: Data that comply with MigsOrg combined with Soil + title: MigsOrgSoil data + slot_uri: MIXS:migs_org_soil_data + range: MigsOrgSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_org_symbiont_associated_data: + description: Data that comply with MigsOrg combined with SymbiontAssociated + title: MigsOrgSymbiontAssociated data + slot_uri: MIXS:migs_org_symbiont_associated_data + range: MigsOrgSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_org_wastewater_sludge_data: + description: Data that comply with MigsOrg combined with WastewaterSludge + title: MigsOrgWastewaterSludge data + slot_uri: MIXS:migs_org_wastewater_sludge_data + range: MigsOrgWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_org_water_data: + description: Data that comply with MigsOrg combined with Water + title: MigsOrgWater data + slot_uri: MIXS:migs_org_water_data + range: MigsOrgWater + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_data: + description: Data that comply with checklist MigsPl + title: MigsPl data + slot_uri: MIXS:migs_pl_data + range: MigsPl + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_agriculture_data: + description: Data that comply with MigsPl combined with Agriculture + title: MigsPlAgriculture data + slot_uri: MIXS:migs_pl_agriculture_data + range: MigsPlAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_air_data: + description: Data that comply with MigsPl combined with Air + title: MigsPlAir data + slot_uri: MIXS:migs_pl_air_data + range: MigsPlAir + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_built_environment_data: + description: Data that comply with MigsPl combined with BuiltEnvironment + title: MigsPlBuiltEnvironment data + slot_uri: MIXS:migs_pl_built_environment_data + range: MigsPlBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_animal_and_animal_feed_data: + description: Data that comply with MigsPl combined with FoodAnimalAndAnimalFeed + title: MigsPlFoodAnimalAndAnimalFeed data + slot_uri: MIXS:migs_pl_food_animal_and_animal_feed_data + range: MigsPlFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_farm_environment_data: + description: Data that comply with MigsPl combined with FoodFarmEnvironment + title: MigsPlFoodFarmEnvironment data + slot_uri: MIXS:migs_pl_food_farm_environment_data + range: MigsPlFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_food_production_facility_data: + description: Data that comply with MigsPl combined with FoodFoodProductionFacility + title: MigsPlFoodFoodProductionFacility data + slot_uri: MIXS:migs_pl_food_food_production_facility_data + range: MigsPlFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_food_human_foods_data: + description: Data that comply with MigsPl combined with FoodHumanFoods + title: MigsPlFoodHumanFoods data + slot_uri: MIXS:migs_pl_food_human_foods_data + range: MigsPlFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_host_associated_data: + description: Data that comply with MigsPl combined with HostAssociated + title: MigsPlHostAssociated data + slot_uri: MIXS:migs_pl_host_associated_data + range: MigsPlHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_associated_data: + description: Data that comply with MigsPl combined with HumanAssociated + title: MigsPlHumanAssociated data + slot_uri: MIXS:migs_pl_human_associated_data + range: MigsPlHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_gut_data: + description: Data that comply with MigsPl combined with HumanGut + title: MigsPlHumanGut data + slot_uri: MIXS:migs_pl_human_gut_data + range: MigsPlHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_oral_data: + description: Data that comply with MigsPl combined with HumanOral + title: MigsPlHumanOral data + slot_uri: MIXS:migs_pl_human_oral_data + range: MigsPlHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_skin_data: + description: Data that comply with MigsPl combined with HumanSkin + title: MigsPlHumanSkin data + slot_uri: MIXS:migs_pl_human_skin_data + range: MigsPlHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_human_vaginal_data: + description: Data that comply with MigsPl combined with HumanVaginal + title: MigsPlHumanVaginal data + slot_uri: MIXS:migs_pl_human_vaginal_data + range: MigsPlHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_hydrocarbon_resources_cores_data: + description: Data that comply with MigsPl combined with HydrocarbonResourcesCores + title: MigsPlHydrocarbonResourcesCores data + slot_uri: MIXS:migs_pl_hydrocarbon_resources_cores_data + range: MigsPlHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MigsPl combined with HydrocarbonResourcesFluidsSwabs + title: MigsPlHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:migs_pl_hydrocarbon_resources_fluids_swabs_data + range: MigsPlHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_microbial_mat_biofilm_data: + description: Data that comply with MigsPl combined with MicrobialMatBiofilm + title: MigsPlMicrobialMatBiofilm data + slot_uri: MIXS:migs_pl_microbial_mat_biofilm_data + range: MigsPlMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsPlMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:migs_pl_miscellaneous_natural_or_artificial_environment_data + range: MigsPlMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_plant_associated_data: + description: Data that comply with MigsPl combined with PlantAssociated + title: MigsPlPlantAssociated data + slot_uri: MIXS:migs_pl_plant_associated_data + range: MigsPlPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_sediment_data: + description: Data that comply with MigsPl combined with Sediment + title: MigsPlSediment data + slot_uri: MIXS:migs_pl_sediment_data + range: MigsPlSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_soil_data: + description: Data that comply with MigsPl combined with Soil + title: MigsPlSoil data + slot_uri: MIXS:migs_pl_soil_data + range: MigsPlSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_symbiont_associated_data: + description: Data that comply with MigsPl combined with SymbiontAssociated + title: MigsPlSymbiontAssociated data + slot_uri: MIXS:migs_pl_symbiont_associated_data + range: MigsPlSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_wastewater_sludge_data: + description: Data that comply with MigsPl combined with WastewaterSludge + title: MigsPlWastewaterSludge data + slot_uri: MIXS:migs_pl_wastewater_sludge_data + range: MigsPlWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_pl_water_data: + description: Data that comply with MigsPl combined with Water + title: MigsPlWater data + slot_uri: MIXS:migs_pl_water_data + range: MigsPlWater + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_data: + description: Data that comply with checklist MigsVi + title: MigsVi data + slot_uri: MIXS:migs_vi_data + range: MigsVi + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_agriculture_data: + description: Data that comply with MigsVi combined with Agriculture + title: MigsViAgriculture data + slot_uri: MIXS:migs_vi_agriculture_data + range: MigsViAgriculture + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_air_data: + description: Data that comply with MigsVi combined with Air + title: MigsViAir data + slot_uri: MIXS:migs_vi_air_data + range: MigsViAir + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_built_environment_data: + description: Data that comply with MigsVi combined with BuiltEnvironment + title: MigsViBuiltEnvironment data + slot_uri: MIXS:migs_vi_built_environment_data + range: MigsViBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_animal_and_animal_feed_data: + description: Data that comply with MigsVi combined with FoodAnimalAndAnimalFeed + title: MigsViFoodAnimalAndAnimalFeed data + slot_uri: MIXS:migs_vi_food_animal_and_animal_feed_data + range: MigsViFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_farm_environment_data: + description: Data that comply with MigsVi combined with FoodFarmEnvironment + title: MigsViFoodFarmEnvironment data + slot_uri: MIXS:migs_vi_food_farm_environment_data + range: MigsViFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_food_production_facility_data: + description: Data that comply with MigsVi combined with FoodFoodProductionFacility + title: MigsViFoodFoodProductionFacility data + slot_uri: MIXS:migs_vi_food_food_production_facility_data + range: MigsViFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_food_human_foods_data: + description: Data that comply with MigsVi combined with FoodHumanFoods + title: MigsViFoodHumanFoods data + slot_uri: MIXS:migs_vi_food_human_foods_data + range: MigsViFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_host_associated_data: + description: Data that comply with MigsVi combined with HostAssociated + title: MigsViHostAssociated data + slot_uri: MIXS:migs_vi_host_associated_data + range: MigsViHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_associated_data: + description: Data that comply with MigsVi combined with HumanAssociated + title: MigsViHumanAssociated data + slot_uri: MIXS:migs_vi_human_associated_data + range: MigsViHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_gut_data: + description: Data that comply with MigsVi combined with HumanGut + title: MigsViHumanGut data + slot_uri: MIXS:migs_vi_human_gut_data + range: MigsViHumanGut + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_oral_data: + description: Data that comply with MigsVi combined with HumanOral + title: MigsViHumanOral data + slot_uri: MIXS:migs_vi_human_oral_data + range: MigsViHumanOral + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_skin_data: + description: Data that comply with MigsVi combined with HumanSkin + title: MigsViHumanSkin data + slot_uri: MIXS:migs_vi_human_skin_data + range: MigsViHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_human_vaginal_data: + description: Data that comply with MigsVi combined with HumanVaginal + title: MigsViHumanVaginal data + slot_uri: MIXS:migs_vi_human_vaginal_data + range: MigsViHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_hydrocarbon_resources_cores_data: + description: Data that comply with MigsVi combined with HydrocarbonResourcesCores + title: MigsViHydrocarbonResourcesCores data + slot_uri: MIXS:migs_vi_hydrocarbon_resources_cores_data + range: MigsViHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MigsVi combined with HydrocarbonResourcesFluidsSwabs + title: MigsViHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:migs_vi_hydrocarbon_resources_fluids_swabs_data + range: MigsViHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_microbial_mat_biofilm_data: + description: Data that comply with MigsVi combined with MicrobialMatBiofilm + title: MigsViMicrobialMatBiofilm data + slot_uri: MIXS:migs_vi_microbial_mat_biofilm_data + range: MigsViMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment + title: MigsViMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:migs_vi_miscellaneous_natural_or_artificial_environment_data + range: MigsViMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_plant_associated_data: + description: Data that comply with MigsVi combined with PlantAssociated + title: MigsViPlantAssociated data + slot_uri: MIXS:migs_vi_plant_associated_data + range: MigsViPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_sediment_data: + description: Data that comply with MigsVi combined with Sediment + title: MigsViSediment data + slot_uri: MIXS:migs_vi_sediment_data + range: MigsViSediment + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_soil_data: + description: Data that comply with MigsVi combined with Soil + title: MigsViSoil data + slot_uri: MIXS:migs_vi_soil_data + range: MigsViSoil + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_symbiont_associated_data: + description: Data that comply with MigsVi combined with SymbiontAssociated + title: MigsViSymbiontAssociated data + slot_uri: MIXS:migs_vi_symbiont_associated_data + range: MigsViSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_wastewater_sludge_data: + description: Data that comply with MigsVi combined with WastewaterSludge + title: MigsViWastewaterSludge data + slot_uri: MIXS:migs_vi_wastewater_sludge_data + range: MigsViWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + migs_vi_water_data: + description: Data that comply with MigsVi combined with Water + title: MigsViWater data + slot_uri: MIXS:migs_vi_water_data + range: MigsViWater + multivalued: true + inlined: true + inlined_as_list: true + mimag_data: + description: Data that comply with checklist Mimag + title: Mimag data + slot_uri: MIXS:mimag_data + range: Mimag + multivalued: true + inlined: true + inlined_as_list: true + mimag_agriculture_data: + description: Data that comply with Mimag combined with Agriculture + title: MimagAgriculture data + slot_uri: MIXS:mimag_agriculture_data + range: MimagAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mimag_air_data: + description: Data that comply with Mimag combined with Air + title: MimagAir data + slot_uri: MIXS:mimag_air_data + range: MimagAir + multivalued: true + inlined: true + inlined_as_list: true + mimag_built_environment_data: + description: Data that comply with Mimag combined with BuiltEnvironment + title: MimagBuiltEnvironment data + slot_uri: MIXS:mimag_built_environment_data + range: MimagBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_animal_and_animal_feed_data: + description: Data that comply with Mimag combined with FoodAnimalAndAnimalFeed + title: MimagFoodAnimalAndAnimalFeed data + slot_uri: MIXS:mimag_food_animal_and_animal_feed_data + range: MimagFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_farm_environment_data: + description: Data that comply with Mimag combined with FoodFarmEnvironment + title: MimagFoodFarmEnvironment data + slot_uri: MIXS:mimag_food_farm_environment_data + range: MimagFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_food_production_facility_data: + description: Data that comply with Mimag combined with FoodFoodProductionFacility + title: MimagFoodFoodProductionFacility data + slot_uri: MIXS:mimag_food_food_production_facility_data + range: MimagFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mimag_food_human_foods_data: + description: Data that comply with Mimag combined with FoodHumanFoods + title: MimagFoodHumanFoods data + slot_uri: MIXS:mimag_food_human_foods_data + range: MimagFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mimag_host_associated_data: + description: Data that comply with Mimag combined with HostAssociated + title: MimagHostAssociated data + slot_uri: MIXS:mimag_host_associated_data + range: MimagHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_associated_data: + description: Data that comply with Mimag combined with HumanAssociated + title: MimagHumanAssociated data + slot_uri: MIXS:mimag_human_associated_data + range: MimagHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_gut_data: + description: Data that comply with Mimag combined with HumanGut + title: MimagHumanGut data + slot_uri: MIXS:mimag_human_gut_data + range: MimagHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_oral_data: + description: Data that comply with Mimag combined with HumanOral + title: MimagHumanOral data + slot_uri: MIXS:mimag_human_oral_data + range: MimagHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_skin_data: + description: Data that comply with Mimag combined with HumanSkin + title: MimagHumanSkin data + slot_uri: MIXS:mimag_human_skin_data + range: MimagHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mimag_human_vaginal_data: + description: Data that comply with Mimag combined with HumanVaginal + title: MimagHumanVaginal data + slot_uri: MIXS:mimag_human_vaginal_data + range: MimagHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mimag_hydrocarbon_resources_cores_data: + description: Data that comply with Mimag combined with HydrocarbonResourcesCores + title: MimagHydrocarbonResourcesCores data + slot_uri: MIXS:mimag_hydrocarbon_resources_cores_data + range: MimagHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mimag_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with Mimag combined with HydrocarbonResourcesFluidsSwabs + title: MimagHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:mimag_hydrocarbon_resources_fluids_swabs_data + range: MimagHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mimag_microbial_mat_biofilm_data: + description: Data that comply with Mimag combined with MicrobialMatBiofilm + title: MimagMicrobialMatBiofilm data + slot_uri: MIXS:mimag_microbial_mat_biofilm_data + range: MimagMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mimag_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with Mimag combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimagMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:mimag_miscellaneous_natural_or_artificial_environment_data + range: MimagMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimag_plant_associated_data: + description: Data that comply with Mimag combined with PlantAssociated + title: MimagPlantAssociated data + slot_uri: MIXS:mimag_plant_associated_data + range: MimagPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_sediment_data: + description: Data that comply with Mimag combined with Sediment + title: MimagSediment data + slot_uri: MIXS:mimag_sediment_data + range: MimagSediment + multivalued: true + inlined: true + inlined_as_list: true + mimag_soil_data: + description: Data that comply with Mimag combined with Soil + title: MimagSoil data + slot_uri: MIXS:mimag_soil_data + range: MimagSoil + multivalued: true + inlined: true + inlined_as_list: true + mimag_symbiont_associated_data: + description: Data that comply with Mimag combined with SymbiontAssociated + title: MimagSymbiontAssociated data + slot_uri: MIXS:mimag_symbiont_associated_data + range: MimagSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimag_wastewater_sludge_data: + description: Data that comply with Mimag combined with WastewaterSludge + title: MimagWastewaterSludge data + slot_uri: MIXS:mimag_wastewater_sludge_data + range: MimagWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mimag_water_data: + description: Data that comply with Mimag combined with Water + title: MimagWater data + slot_uri: MIXS:mimag_water_data + range: MimagWater + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_data: + description: Data that comply with checklist MimarksC + title: MimarksC data + slot_uri: MIXS:mimarks_c_data + range: MimarksC + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_agriculture_data: + description: Data that comply with MimarksC combined with Agriculture + title: MimarksCAgriculture data + slot_uri: MIXS:mimarks_c_agriculture_data + range: MimarksCAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_air_data: + description: Data that comply with MimarksC combined with Air + title: MimarksCAir data + slot_uri: MIXS:mimarks_c_air_data + range: MimarksCAir + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_built_environment_data: + description: Data that comply with MimarksC combined with BuiltEnvironment + title: MimarksCBuiltEnvironment data + slot_uri: MIXS:mimarks_c_built_environment_data + range: MimarksCBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_animal_and_animal_feed_data: + description: Data that comply with MimarksC combined with FoodAnimalAndAnimalFeed + title: MimarksCFoodAnimalAndAnimalFeed data + slot_uri: MIXS:mimarks_c_food_animal_and_animal_feed_data + range: MimarksCFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_farm_environment_data: + description: Data that comply with MimarksC combined with FoodFarmEnvironment + title: MimarksCFoodFarmEnvironment data + slot_uri: MIXS:mimarks_c_food_farm_environment_data + range: MimarksCFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_food_production_facility_data: + description: Data that comply with MimarksC combined with FoodFoodProductionFacility + title: MimarksCFoodFoodProductionFacility data + slot_uri: MIXS:mimarks_c_food_food_production_facility_data + range: MimarksCFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_food_human_foods_data: + description: Data that comply with MimarksC combined with FoodHumanFoods + title: MimarksCFoodHumanFoods data + slot_uri: MIXS:mimarks_c_food_human_foods_data + range: MimarksCFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_host_associated_data: + description: Data that comply with MimarksC combined with HostAssociated + title: MimarksCHostAssociated data + slot_uri: MIXS:mimarks_c_host_associated_data + range: MimarksCHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_associated_data: + description: Data that comply with MimarksC combined with HumanAssociated + title: MimarksCHumanAssociated data + slot_uri: MIXS:mimarks_c_human_associated_data + range: MimarksCHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_gut_data: + description: Data that comply with MimarksC combined with HumanGut + title: MimarksCHumanGut data + slot_uri: MIXS:mimarks_c_human_gut_data + range: MimarksCHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_oral_data: + description: Data that comply with MimarksC combined with HumanOral + title: MimarksCHumanOral data + slot_uri: MIXS:mimarks_c_human_oral_data + range: MimarksCHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_skin_data: + description: Data that comply with MimarksC combined with HumanSkin + title: MimarksCHumanSkin data + slot_uri: MIXS:mimarks_c_human_skin_data + range: MimarksCHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_human_vaginal_data: + description: Data that comply with MimarksC combined with HumanVaginal + title: MimarksCHumanVaginal data + slot_uri: MIXS:mimarks_c_human_vaginal_data + range: MimarksCHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_hydrocarbon_resources_cores_data: + description: Data that comply with MimarksC combined with HydrocarbonResourcesCores + title: MimarksCHydrocarbonResourcesCores data + slot_uri: MIXS:mimarks_c_hydrocarbon_resources_cores_data + range: MimarksCHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MimarksC combined with HydrocarbonResourcesFluidsSwabs + title: MimarksCHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:mimarks_c_hydrocarbon_resources_fluids_swabs_data + range: MimarksCHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_microbial_mat_biofilm_data: + description: Data that comply with MimarksC combined with MicrobialMatBiofilm + title: MimarksCMicrobialMatBiofilm data + slot_uri: MIXS:mimarks_c_microbial_mat_biofilm_data + range: MimarksCMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimarksCMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:mimarks_c_miscellaneous_natural_or_artificial_environment_data + range: MimarksCMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_plant_associated_data: + description: Data that comply with MimarksC combined with PlantAssociated + title: MimarksCPlantAssociated data + slot_uri: MIXS:mimarks_c_plant_associated_data + range: MimarksCPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_sediment_data: + description: Data that comply with MimarksC combined with Sediment + title: MimarksCSediment data + slot_uri: MIXS:mimarks_c_sediment_data + range: MimarksCSediment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_soil_data: + description: Data that comply with MimarksC combined with Soil + title: MimarksCSoil data + slot_uri: MIXS:mimarks_c_soil_data + range: MimarksCSoil + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_symbiont_associated_data: + description: Data that comply with MimarksC combined with SymbiontAssociated + title: MimarksCSymbiontAssociated data + slot_uri: MIXS:mimarks_c_symbiont_associated_data + range: MimarksCSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_wastewater_sludge_data: + description: Data that comply with MimarksC combined with WastewaterSludge + title: MimarksCWastewaterSludge data + slot_uri: MIXS:mimarks_c_wastewater_sludge_data + range: MimarksCWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mimarks_c_water_data: + description: Data that comply with MimarksC combined with Water + title: MimarksCWater data + slot_uri: MIXS:mimarks_c_water_data + range: MimarksCWater + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_data: + description: Data that comply with checklist MimarksS + title: MimarksS data + slot_uri: MIXS:mimarks_s_data + range: MimarksS + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_agriculture_data: + description: Data that comply with MimarksS combined with Agriculture + title: MimarksSAgriculture data + slot_uri: MIXS:mimarks_s_agriculture_data + range: MimarksSAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_air_data: + description: Data that comply with MimarksS combined with Air + title: MimarksSAir data + slot_uri: MIXS:mimarks_s_air_data + range: MimarksSAir + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_built_environment_data: + description: Data that comply with MimarksS combined with BuiltEnvironment + title: MimarksSBuiltEnvironment data + slot_uri: MIXS:mimarks_s_built_environment_data + range: MimarksSBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_animal_and_animal_feed_data: + description: Data that comply with MimarksS combined with FoodAnimalAndAnimalFeed + title: MimarksSFoodAnimalAndAnimalFeed data + slot_uri: MIXS:mimarks_s_food_animal_and_animal_feed_data + range: MimarksSFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_farm_environment_data: + description: Data that comply with MimarksS combined with FoodFarmEnvironment + title: MimarksSFoodFarmEnvironment data + slot_uri: MIXS:mimarks_s_food_farm_environment_data + range: MimarksSFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_food_production_facility_data: + description: Data that comply with MimarksS combined with FoodFoodProductionFacility + title: MimarksSFoodFoodProductionFacility data + slot_uri: MIXS:mimarks_s_food_food_production_facility_data + range: MimarksSFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_food_human_foods_data: + description: Data that comply with MimarksS combined with FoodHumanFoods + title: MimarksSFoodHumanFoods data + slot_uri: MIXS:mimarks_s_food_human_foods_data + range: MimarksSFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_host_associated_data: + description: Data that comply with MimarksS combined with HostAssociated + title: MimarksSHostAssociated data + slot_uri: MIXS:mimarks_s_host_associated_data + range: MimarksSHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_associated_data: + description: Data that comply with MimarksS combined with HumanAssociated + title: MimarksSHumanAssociated data + slot_uri: MIXS:mimarks_s_human_associated_data + range: MimarksSHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_gut_data: + description: Data that comply with MimarksS combined with HumanGut + title: MimarksSHumanGut data + slot_uri: MIXS:mimarks_s_human_gut_data + range: MimarksSHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_oral_data: + description: Data that comply with MimarksS combined with HumanOral + title: MimarksSHumanOral data + slot_uri: MIXS:mimarks_s_human_oral_data + range: MimarksSHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_skin_data: + description: Data that comply with MimarksS combined with HumanSkin + title: MimarksSHumanSkin data + slot_uri: MIXS:mimarks_s_human_skin_data + range: MimarksSHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_human_vaginal_data: + description: Data that comply with MimarksS combined with HumanVaginal + title: MimarksSHumanVaginal data + slot_uri: MIXS:mimarks_s_human_vaginal_data + range: MimarksSHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_hydrocarbon_resources_cores_data: + description: Data that comply with MimarksS combined with HydrocarbonResourcesCores + title: MimarksSHydrocarbonResourcesCores data + slot_uri: MIXS:mimarks_s_hydrocarbon_resources_cores_data + range: MimarksSHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with MimarksS combined with HydrocarbonResourcesFluidsSwabs + title: MimarksSHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:mimarks_s_hydrocarbon_resources_fluids_swabs_data + range: MimarksSHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_microbial_mat_biofilm_data: + description: Data that comply with MimarksS combined with MicrobialMatBiofilm + title: MimarksSMicrobialMatBiofilm data + slot_uri: MIXS:mimarks_s_microbial_mat_biofilm_data + range: MimarksSMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimarksSMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:mimarks_s_miscellaneous_natural_or_artificial_environment_data + range: MimarksSMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_plant_associated_data: + description: Data that comply with MimarksS combined with PlantAssociated + title: MimarksSPlantAssociated data + slot_uri: MIXS:mimarks_s_plant_associated_data + range: MimarksSPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_sediment_data: + description: Data that comply with MimarksS combined with Sediment + title: MimarksSSediment data + slot_uri: MIXS:mimarks_s_sediment_data + range: MimarksSSediment + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_soil_data: + description: Data that comply with MimarksS combined with Soil + title: MimarksSSoil data + slot_uri: MIXS:mimarks_s_soil_data + range: MimarksSSoil + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_symbiont_associated_data: + description: Data that comply with MimarksS combined with SymbiontAssociated + title: MimarksSSymbiontAssociated data + slot_uri: MIXS:mimarks_s_symbiont_associated_data + range: MimarksSSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_wastewater_sludge_data: + description: Data that comply with MimarksS combined with WastewaterSludge + title: MimarksSWastewaterSludge data + slot_uri: MIXS:mimarks_s_wastewater_sludge_data + range: MimarksSWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mimarks_s_water_data: + description: Data that comply with MimarksS combined with Water + title: MimarksSWater data + slot_uri: MIXS:mimarks_s_water_data + range: MimarksSWater + multivalued: true + inlined: true + inlined_as_list: true + mims_data: + description: Data that comply with checklist Mims + title: Mims data + slot_uri: MIXS:mims_data + range: Mims + multivalued: true + inlined: true + inlined_as_list: true + mims_agriculture_data: + description: Data that comply with Mims combined with Agriculture + title: MimsAgriculture data + slot_uri: MIXS:mims_agriculture_data + range: MimsAgriculture + multivalued: true + inlined: true + inlined_as_list: true + mims_air_data: + description: Data that comply with Mims combined with Air + title: MimsAir data + slot_uri: MIXS:mims_air_data + range: MimsAir + multivalued: true + inlined: true + inlined_as_list: true + mims_built_environment_data: + description: Data that comply with Mims combined with BuiltEnvironment + title: MimsBuiltEnvironment data + slot_uri: MIXS:mims_built_environment_data + range: MimsBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mims_food_animal_and_animal_feed_data: + description: Data that comply with Mims combined with FoodAnimalAndAnimalFeed + title: MimsFoodAnimalAndAnimalFeed data + slot_uri: MIXS:mims_food_animal_and_animal_feed_data + range: MimsFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + mims_food_farm_environment_data: + description: Data that comply with Mims combined with FoodFarmEnvironment + title: MimsFoodFarmEnvironment data + slot_uri: MIXS:mims_food_farm_environment_data + range: MimsFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mims_food_food_production_facility_data: + description: Data that comply with Mims combined with FoodFoodProductionFacility + title: MimsFoodFoodProductionFacility data + slot_uri: MIXS:mims_food_food_production_facility_data + range: MimsFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + mims_food_human_foods_data: + description: Data that comply with Mims combined with FoodHumanFoods + title: MimsFoodHumanFoods data + slot_uri: MIXS:mims_food_human_foods_data + range: MimsFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + mims_host_associated_data: + description: Data that comply with Mims combined with HostAssociated + title: MimsHostAssociated data + slot_uri: MIXS:mims_host_associated_data + range: MimsHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_human_associated_data: + description: Data that comply with Mims combined with HumanAssociated + title: MimsHumanAssociated data + slot_uri: MIXS:mims_human_associated_data + range: MimsHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_human_gut_data: + description: Data that comply with Mims combined with HumanGut + title: MimsHumanGut data + slot_uri: MIXS:mims_human_gut_data + range: MimsHumanGut + multivalued: true + inlined: true + inlined_as_list: true + mims_human_oral_data: + description: Data that comply with Mims combined with HumanOral + title: MimsHumanOral data + slot_uri: MIXS:mims_human_oral_data + range: MimsHumanOral + multivalued: true + inlined: true + inlined_as_list: true + mims_human_skin_data: + description: Data that comply with Mims combined with HumanSkin + title: MimsHumanSkin data + slot_uri: MIXS:mims_human_skin_data + range: MimsHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + mims_human_vaginal_data: + description: Data that comply with Mims combined with HumanVaginal + title: MimsHumanVaginal data + slot_uri: MIXS:mims_human_vaginal_data + range: MimsHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + mims_hydrocarbon_resources_cores_data: + description: Data that comply with Mims combined with HydrocarbonResourcesCores + title: MimsHydrocarbonResourcesCores data + slot_uri: MIXS:mims_hydrocarbon_resources_cores_data + range: MimsHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + mims_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with Mims combined with HydrocarbonResourcesFluidsSwabs + title: MimsHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:mims_hydrocarbon_resources_fluids_swabs_data + range: MimsHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + mims_microbial_mat_biofilm_data: + description: Data that comply with Mims combined with MicrobialMatBiofilm + title: MimsMicrobialMatBiofilm data + slot_uri: MIXS:mims_microbial_mat_biofilm_data + range: MimsMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + mims_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with Mims combined with MiscellaneousNaturalOrArtificialEnvironment + title: MimsMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:mims_miscellaneous_natural_or_artificial_environment_data + range: MimsMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + mims_plant_associated_data: + description: Data that comply with Mims combined with PlantAssociated + title: MimsPlantAssociated data + slot_uri: MIXS:mims_plant_associated_data + range: MimsPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_sediment_data: + description: Data that comply with Mims combined with Sediment + title: MimsSediment data + slot_uri: MIXS:mims_sediment_data + range: MimsSediment + multivalued: true + inlined: true + inlined_as_list: true + mims_soil_data: + description: Data that comply with Mims combined with Soil + title: MimsSoil data + slot_uri: MIXS:mims_soil_data + range: MimsSoil + multivalued: true + inlined: true + inlined_as_list: true + mims_symbiont_associated_data: + description: Data that comply with Mims combined with SymbiontAssociated + title: MimsSymbiontAssociated data + slot_uri: MIXS:mims_symbiont_associated_data + range: MimsSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + mims_wastewater_sludge_data: + description: Data that comply with Mims combined with WastewaterSludge + title: MimsWastewaterSludge data + slot_uri: MIXS:mims_wastewater_sludge_data + range: MimsWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + mims_water_data: + description: Data that comply with Mims combined with Water + title: MimsWater data + slot_uri: MIXS:mims_water_data + range: MimsWater + multivalued: true + inlined: true + inlined_as_list: true + misag_data: + description: Data that comply with checklist Misag + title: Misag data + slot_uri: MIXS:misag_data + range: Misag + multivalued: true + inlined: true + inlined_as_list: true + misag_agriculture_data: + description: Data that comply with Misag combined with Agriculture + title: MisagAgriculture data + slot_uri: MIXS:misag_agriculture_data + range: MisagAgriculture + multivalued: true + inlined: true + inlined_as_list: true + misag_air_data: + description: Data that comply with Misag combined with Air + title: MisagAir data + slot_uri: MIXS:misag_air_data + range: MisagAir + multivalued: true + inlined: true + inlined_as_list: true + misag_built_environment_data: + description: Data that comply with Misag combined with BuiltEnvironment + title: MisagBuiltEnvironment data + slot_uri: MIXS:misag_built_environment_data + range: MisagBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + misag_food_animal_and_animal_feed_data: + description: Data that comply with Misag combined with FoodAnimalAndAnimalFeed + title: MisagFoodAnimalAndAnimalFeed data + slot_uri: MIXS:misag_food_animal_and_animal_feed_data + range: MisagFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + misag_food_farm_environment_data: + description: Data that comply with Misag combined with FoodFarmEnvironment + title: MisagFoodFarmEnvironment data + slot_uri: MIXS:misag_food_farm_environment_data + range: MisagFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + misag_food_food_production_facility_data: + description: Data that comply with Misag combined with FoodFoodProductionFacility + title: MisagFoodFoodProductionFacility data + slot_uri: MIXS:misag_food_food_production_facility_data + range: MisagFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + misag_food_human_foods_data: + description: Data that comply with Misag combined with FoodHumanFoods + title: MisagFoodHumanFoods data + slot_uri: MIXS:misag_food_human_foods_data + range: MisagFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + misag_host_associated_data: + description: Data that comply with Misag combined with HostAssociated + title: MisagHostAssociated data + slot_uri: MIXS:misag_host_associated_data + range: MisagHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_human_associated_data: + description: Data that comply with Misag combined with HumanAssociated + title: MisagHumanAssociated data + slot_uri: MIXS:misag_human_associated_data + range: MisagHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_human_gut_data: + description: Data that comply with Misag combined with HumanGut + title: MisagHumanGut data + slot_uri: MIXS:misag_human_gut_data + range: MisagHumanGut + multivalued: true + inlined: true + inlined_as_list: true + misag_human_oral_data: + description: Data that comply with Misag combined with HumanOral + title: MisagHumanOral data + slot_uri: MIXS:misag_human_oral_data + range: MisagHumanOral + multivalued: true + inlined: true + inlined_as_list: true + misag_human_skin_data: + description: Data that comply with Misag combined with HumanSkin + title: MisagHumanSkin data + slot_uri: MIXS:misag_human_skin_data + range: MisagHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + misag_human_vaginal_data: + description: Data that comply with Misag combined with HumanVaginal + title: MisagHumanVaginal data + slot_uri: MIXS:misag_human_vaginal_data + range: MisagHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + misag_hydrocarbon_resources_cores_data: + description: Data that comply with Misag combined with HydrocarbonResourcesCores + title: MisagHydrocarbonResourcesCores data + slot_uri: MIXS:misag_hydrocarbon_resources_cores_data + range: MisagHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + misag_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with Misag combined with HydrocarbonResourcesFluidsSwabs + title: MisagHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:misag_hydrocarbon_resources_fluids_swabs_data + range: MisagHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + misag_microbial_mat_biofilm_data: + description: Data that comply with Misag combined with MicrobialMatBiofilm + title: MisagMicrobialMatBiofilm data + slot_uri: MIXS:misag_microbial_mat_biofilm_data + range: MisagMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + misag_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with Misag combined with MiscellaneousNaturalOrArtificialEnvironment + title: MisagMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:misag_miscellaneous_natural_or_artificial_environment_data + range: MisagMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + misag_plant_associated_data: + description: Data that comply with Misag combined with PlantAssociated + title: MisagPlantAssociated data + slot_uri: MIXS:misag_plant_associated_data + range: MisagPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_sediment_data: + description: Data that comply with Misag combined with Sediment + title: MisagSediment data + slot_uri: MIXS:misag_sediment_data + range: MisagSediment + multivalued: true + inlined: true + inlined_as_list: true + misag_soil_data: + description: Data that comply with Misag combined with Soil + title: MisagSoil data + slot_uri: MIXS:misag_soil_data + range: MisagSoil + multivalued: true + inlined: true + inlined_as_list: true + misag_symbiont_associated_data: + description: Data that comply with Misag combined with SymbiontAssociated + title: MisagSymbiontAssociated data + slot_uri: MIXS:misag_symbiont_associated_data + range: MisagSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + misag_wastewater_sludge_data: + description: Data that comply with Misag combined with WastewaterSludge + title: MisagWastewaterSludge data + slot_uri: MIXS:misag_wastewater_sludge_data + range: MisagWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + misag_water_data: + description: Data that comply with Misag combined with Water + title: MisagWater data + slot_uri: MIXS:misag_water_data + range: MisagWater + multivalued: true + inlined: true + inlined_as_list: true + miuvig_data: + description: Data that comply with checklist Miuvig + title: Miuvig data + slot_uri: MIXS:miuvig_data + range: Miuvig + multivalued: true + inlined: true + inlined_as_list: true + miuvig_agriculture_data: + description: Data that comply with Miuvig combined with Agriculture + title: MiuvigAgriculture data + slot_uri: MIXS:miuvig_agriculture_data + range: MiuvigAgriculture + multivalued: true + inlined: true + inlined_as_list: true + miuvig_air_data: + description: Data that comply with Miuvig combined with Air + title: MiuvigAir data + slot_uri: MIXS:miuvig_air_data + range: MiuvigAir + multivalued: true + inlined: true + inlined_as_list: true + miuvig_built_environment_data: + description: Data that comply with Miuvig combined with BuiltEnvironment + title: MiuvigBuiltEnvironment data + slot_uri: MIXS:miuvig_built_environment_data + range: MiuvigBuiltEnvironment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_animal_and_animal_feed_data: + description: Data that comply with Miuvig combined with FoodAnimalAndAnimalFeed + title: MiuvigFoodAnimalAndAnimalFeed data + slot_uri: MIXS:miuvig_food_animal_and_animal_feed_data + range: MiuvigFoodAnimalAndAnimalFeed + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_farm_environment_data: + description: Data that comply with Miuvig combined with FoodFarmEnvironment + title: MiuvigFoodFarmEnvironment data + slot_uri: MIXS:miuvig_food_farm_environment_data + range: MiuvigFoodFarmEnvironment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_food_production_facility_data: + description: Data that comply with Miuvig combined with FoodFoodProductionFacility + title: MiuvigFoodFoodProductionFacility data + slot_uri: MIXS:miuvig_food_food_production_facility_data + range: MiuvigFoodFoodProductionFacility + multivalued: true + inlined: true + inlined_as_list: true + miuvig_food_human_foods_data: + description: Data that comply with Miuvig combined with FoodHumanFoods + title: MiuvigFoodHumanFoods data + slot_uri: MIXS:miuvig_food_human_foods_data + range: MiuvigFoodHumanFoods + multivalued: true + inlined: true + inlined_as_list: true + miuvig_host_associated_data: + description: Data that comply with Miuvig combined with HostAssociated + title: MiuvigHostAssociated data + slot_uri: MIXS:miuvig_host_associated_data + range: MiuvigHostAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_associated_data: + description: Data that comply with Miuvig combined with HumanAssociated + title: MiuvigHumanAssociated data + slot_uri: MIXS:miuvig_human_associated_data + range: MiuvigHumanAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_gut_data: + description: Data that comply with Miuvig combined with HumanGut + title: MiuvigHumanGut data + slot_uri: MIXS:miuvig_human_gut_data + range: MiuvigHumanGut + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_oral_data: + description: Data that comply with Miuvig combined with HumanOral + title: MiuvigHumanOral data + slot_uri: MIXS:miuvig_human_oral_data + range: MiuvigHumanOral + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_skin_data: + description: Data that comply with Miuvig combined with HumanSkin + title: MiuvigHumanSkin data + slot_uri: MIXS:miuvig_human_skin_data + range: MiuvigHumanSkin + multivalued: true + inlined: true + inlined_as_list: true + miuvig_human_vaginal_data: + description: Data that comply with Miuvig combined with HumanVaginal + title: MiuvigHumanVaginal data + slot_uri: MIXS:miuvig_human_vaginal_data + range: MiuvigHumanVaginal + multivalued: true + inlined: true + inlined_as_list: true + miuvig_hydrocarbon_resources_cores_data: + description: Data that comply with Miuvig combined with HydrocarbonResourcesCores + title: MiuvigHydrocarbonResourcesCores data + slot_uri: MIXS:miuvig_hydrocarbon_resources_cores_data + range: MiuvigHydrocarbonResourcesCores + multivalued: true + inlined: true + inlined_as_list: true + miuvig_hydrocarbon_resources_fluids_swabs_data: + description: Data that comply with Miuvig combined with HydrocarbonResourcesFluidsSwabs + title: MiuvigHydrocarbonResourcesFluidsSwabs data + slot_uri: MIXS:miuvig_hydrocarbon_resources_fluids_swabs_data + range: MiuvigHydrocarbonResourcesFluidsSwabs + multivalued: true + inlined: true + inlined_as_list: true + miuvig_microbial_mat_biofilm_data: + description: Data that comply with Miuvig combined with MicrobialMatBiofilm + title: MiuvigMicrobialMatBiofilm data + slot_uri: MIXS:miuvig_microbial_mat_biofilm_data + range: MiuvigMicrobialMatBiofilm + multivalued: true + inlined: true + inlined_as_list: true + miuvig_miscellaneous_natural_or_artificial_environment_data: + description: Data that comply with Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment + title: MiuvigMiscellaneousNaturalOrArtificialEnvironment data + slot_uri: MIXS:miuvig_miscellaneous_natural_or_artificial_environment_data + range: MiuvigMiscellaneousNaturalOrArtificialEnvironment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_plant_associated_data: + description: Data that comply with Miuvig combined with PlantAssociated + title: MiuvigPlantAssociated data + slot_uri: MIXS:miuvig_plant_associated_data + range: MiuvigPlantAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_sediment_data: + description: Data that comply with Miuvig combined with Sediment + title: MiuvigSediment data + slot_uri: MIXS:miuvig_sediment_data + range: MiuvigSediment + multivalued: true + inlined: true + inlined_as_list: true + miuvig_soil_data: + description: Data that comply with Miuvig combined with Soil + title: MiuvigSoil data + slot_uri: MIXS:miuvig_soil_data + range: MiuvigSoil + multivalued: true + inlined: true + inlined_as_list: true + miuvig_symbiont_associated_data: + description: Data that comply with Miuvig combined with SymbiontAssociated + title: MiuvigSymbiontAssociated data + slot_uri: MIXS:miuvig_symbiont_associated_data + range: MiuvigSymbiontAssociated + multivalued: true + inlined: true + inlined_as_list: true + miuvig_wastewater_sludge_data: + description: Data that comply with Miuvig combined with WastewaterSludge + title: MiuvigWastewaterSludge data + slot_uri: MIXS:miuvig_wastewater_sludge_data + range: MiuvigWastewaterSludge + multivalued: true + inlined: true + inlined_as_list: true + miuvig_water_data: + description: Data that comply with Miuvig combined with Water + title: MiuvigWater data + slot_uri: MIXS:miuvig_water_data + range: MiuvigWater + multivalued: true + inlined: true + inlined_as_list: true + HACCP_term: + description: Hazard Analysis Critical Control Points (HACCP) food safety terms; + This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221) + title: Hazard Analysis Critical Control Points (HACCP) guide food safety term + examples: + - value: tetrodotoxic poisoning [FOODON:03530249] + keywords: + - food + - term + slot_uri: MIXS:0001215 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + IFSAC_category: + annotations: + Expected_value: + tag: Expected_value + value: IFSAC term + description: 'The IFSAC food categorization scheme has five distinct levels to + which foods can be assigned, depending upon the type of food. First, foods + are assigned to one of four food groups (aquatic animals, land animals, plants, + and other). Food groups include increasingly specific food categories; dairy, + eggs, meat and poultry, and game are in the land animal food group, and the + category meat and poultry is further subdivided into more specific categories + of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry). + Finally, foods are differentiated by differences in food processing (such as + pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized + solid and semi-solid dairy products, and unpasteurized solid and semi-solid + dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html + PMID: 28926300' + title: Interagency Food Safety Analytics Collaboration (IFSAC) category + examples: + - value: Plants:Produce:Vegetables:Herbs:Dried Herbs + keywords: + - food + slot_uri: MIXS:0001179 + range: string + required: true + multivalued: true + abs_air_humidity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram per gram, kilogram per kilogram, kilogram, pound + description: Actual mass of water vapor - mh20 - present in the air water vapor + mixture + title: absolute air humidity + examples: + - value: 9 gram per gram + keywords: + - absolute + - air + - humidity + slot_uri: MIXS:0000122 + range: string + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + adapters: + description: Adapters provide priming sequences for both amplification and sequencing + of the sample-library fragments. Both adapters should be reported; in uppercase + letters + title: adapters + examples: + - value: AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT + in_subset: + - sequencing + slot_uri: MIXS:0000048 + pattern: ^[ACGTRKSYMWBHDVN]+;[ACGTRKSYMWBHDVN]+$ + structured_pattern: + syntax: ^{adapter_A_DNA_sequence};{adapter_B_DNA_sequence}$ + interpolated: true + partial_match: true + add_recov_method: + description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed + for increase of hydrocarbon recovery from resource and start date for each + one of them. If "other" is specified, please propose entry in "additional info" + field + title: secondary and tertiary recovery methods and start date + examples: + - value: Polymer Addition;2018-06-21T14:30Z + keywords: + - date + - method + - recover + - secondary + - start + slot_uri: MIXS:0001009 + required: true + pattern: ^(Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer + Addition|Surfactant Addition|Not Applicable|other);(\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$$ + structured_pattern: + syntax: ^({add_recov_methods});{date_time_stamp}$ + interpolated: true + partial_match: true + additional_info: + description: Information that doesn't fit anywhere else. Can also be used to + propose new entries for fields with controlled vocabulary + title: additional info + keywords: + - information + slot_uri: MIXS:0000300 + range: string + address: + description: The street name and building number where the sampling occurred + title: address + slot_uri: MIXS:0000218 + pattern: ^[1-9][0-9]* .*}$ + structured_pattern: + syntax: ^{integer} {text}}$ + interpolated: true + partial_match: true + adj_room: + description: List of rooms (room number, room name) immediately adjacent to the + sampling room + title: adjacent rooms + keywords: + - adjacent + - room + slot_uri: MIXS:0000219 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + adjacent_environment: + annotations: + Expected_value: + tag: Expected_value + value: ENVO_01001110 or ENVO_00000070 + description: Description of the environmental system or features that are adjacent + to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) + and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple + terms can be separated by pipes + title: environment adjacent to site + examples: + - value: estuarine biome [ENVO:01000020] + keywords: + - adjacent + - environment + - site + string_serialization: '{termLabel}{[termID]}' + slot_uri: MIXS:0001121 + multivalued: true + aero_struc: + description: Aerospace structures typically consist of thin plates with stiffeners + for the external surfaces, bulkheads and frames to support the shape and fasteners + such as welds, rivets, screws and bolts to hold the components together + title: aerospace structure + examples: + - value: plane + slot_uri: MIXS:0000773 + range: AeroStrucEnum + agrochem_addition: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Addition of fertilizers, pesticides, etc. - amount and time of applications + title: history/agrochemical additions + examples: + - value: roundup;5 milligram per liter;2018-06-21 + keywords: + - history + slot_uri: MIXS:0000639 + multivalued: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+);(\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$$ + structured_pattern: + syntax: ^{agrochemical_name};{amount} {unit};{date_time_stamp}$ + interpolated: true + partial_match: true + air_PM_concen: + description: Concentration of substances that remain suspended in the air, and + comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can + report multiple PM's by entering numeric values preceded by name of PM + title: air particulate matter concentration + examples: + - value: PM2.5;10 microgram per cubic meter + keywords: + - air + - concentration + - particle + - particulate + slot_uri: MIXS:0000108 + multivalued: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{particulate_matter_name};{float} {unit}$ + interpolated: true + partial_match: true + air_flow_impede: + annotations: + Expected_value: + tag: Expected_value + value: enumeration;obstruction type; distance from sampling device + description: Presence of objects in the area that would influence or impede air + flow through the air filter + title: local air flow impediments + examples: + - value: obstructed;hay bales; 2 m + keywords: + - air + string_serialization: '[obstructed|unobstructed]; {text}; {measurement value}' + slot_uri: MIXS:0001146 + multivalued: true + air_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of the air at the time of sampling + title: air temperature + keywords: + - air + - temperature + slot_uri: MIXS:0000124 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + air_temp_regm: + annotations: + Expected_value: + tag: Expected_value + value: temperature value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: meter + description: Information about treatment involving an exposure to varying temperatures; + should include the temperature, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include different temperature regimens + title: air temperature regimen + examples: + - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - air + - regimen + - temperature + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000551 + multivalued: true + al_sat: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Aluminum saturation (esp. For tropical soils) + title: extreme_unusual_properties/Al saturation + keywords: + - extreme + - properties + - saturation + - unusual + slot_uri: MIXS:0000607 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + al_sat_meth: + description: Reference or method used in determining Al saturation + title: extreme_unusual_properties/Al saturation method + keywords: + - extreme + - method + - properties + - saturation + - unusual + slot_uri: MIXS:0000324 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + alkalinity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliequivalent per liter, milligram per liter + description: Alkalinity, the ability of a solution to neutralize acids to the + equivalence point of carbonate or bicarbonate + title: alkalinity + examples: + - value: 50 milligram per liter + keywords: + - alkalinity + slot_uri: MIXS:0000421 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + alkalinity_method: + description: Method used for alkalinity measurement + title: alkalinity method + examples: + - value: titration + keywords: + - alkalinity + - method + slot_uri: MIXS:0000298 + range: string + alkyl_diethers: + description: Concentration of alkyl diethers + title: alkyl diethers + examples: + - value: 0.005 mole per liter + slot_uri: MIXS:0000490 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + alt: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric + balloons and heights of places such as atmospheric layers and clouds. It is + used to measure the height of an object which is above the earth's surface. + In this context, the altitude measurement is the vertical distance between + the earth's surface above sea level and the sampled position in the air + title: altitude + examples: + - value: 100 meter + in_subset: + - environment + slot_uri: MIXS:0000094 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + aminopept_act: + annotations: + Preferred_unit: + tag: Preferred_unit + value: mole per liter per hour + description: Measurement of aminopeptidase activity + title: aminopeptidase activity + examples: + - value: 0.269 mole per liter per hour + slot_uri: MIXS:0000172 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ammonium: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of ammonium in the sample + title: ammonium + examples: + - value: 1.5 milligram per liter + slot_uri: MIXS:0000427 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + amniotic_fluid_color: + description: Specification of the color of the amniotic fluid sample + title: amniotic fluid/color + slot_uri: MIXS:0000276 + range: string + amount_light: + annotations: + Preferred_unit: + tag: Preferred_unit + value: lux, lumens per square meter + description: The unit of illuminance and luminous emittance, measuring luminous + flux per unit area + title: amount of light + keywords: + - light + slot_uri: MIXS:0000140 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ances_data: + description: Information about either pedigree or other ancestral information + description (e.g. parental variety in case of mutant or selection), e.g. A/3*B + (meaning [(A x B) x B] x B) + title: ancestral data + examples: + - value: A/3*B + slot_uri: MIXS:0000247 + range: string + anim_water_method: + description: Description of the equipment or method used to distribute water + to livestock. This field accepts termed listed under water delivery equipment + (http://opendata.inra.fr/EOL/EOL_0001653). Multiple terms can be separated + by pipes + title: animal water delivery method + examples: + - value: water trough [EOL:0001618] + keywords: + - animal + - delivery + - method + - water + slot_uri: MIXS:0001115 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + animal_am: + description: The name(s) (generic or brand) of the antimicrobial(s) given to + the food animal within the last 30 days + title: food animal antimicrobial + examples: + - value: tetracycline + keywords: + - animal + - antimicrobial + - food + slot_uri: MIXS:0001243 + range: string + animal_am_dur: + description: The duration of time (days) that the antimicrobial was administered + to the food animal + title: food animal antimicrobial duration + examples: + - value: 3 days + keywords: + - animal + - antimicrobial + - duration + - food + - period + slot_uri: MIXS:0001244 + pattern: ^[-+]?[0-9]*\.?[0-9]+ days$ + structured_pattern: + syntax: ^{float} days$ + interpolated: true + partial_match: true + animal_am_freq: + description: The frequency per day that the antimicrobial was administered to + the food animal + title: food animal antimicrobial frequency + examples: + - value: '1.5' + keywords: + - animal + - antimicrobial + - food + - frequency + slot_uri: MIXS:0001245 + range: float + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + animal_am_route: + description: The route by which the antimicrobial is adminstered into the body + of the food animal + title: food animal antimicrobial route of administration + examples: + - value: oral-feed + keywords: + - administration + - animal + - antimicrobial + - food + - route + slot_uri: MIXS:0001246 + range: string + animal_am_use: + description: The prescribed intended use of or the condition treated by the antimicrobial + given to the food animal by any route of administration + title: food animal antimicrobial intended use + examples: + - value: shipping fever + keywords: + - animal + - antimicrobial + - food + - use + slot_uri: MIXS:0001247 + range: string + animal_body_cond: + description: Body condition scoring is a production management tool used to evaluate + overall health and nutritional needs of a food animal. Because there are different + scoring systems, this field is restricted to three categories + title: food animal body condition + examples: + - value: under conditioned + keywords: + - animal + - body + - condition + - food + slot_uri: MIXS:0001248 + range: AnimalBodyCondEnum + animal_diet: + annotations: + Expected_value: + tag: Expected_value + value: text or FOODON_03309997 + description: If the isolate is from a food animal, the type of diet eaten by + the food animal. Please list the main food staple and the setting, if appropriate. For + a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple + terms may apply and can be separated by pipes |Food product for animal covers + foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997. + If the proper descriptor is not listed please use text to describe the food + type. Multiple terms can be separated by one or more pipes. If the proper descriptor + is not listed please use text to describe the food product type + title: food animal source diet + examples: + - value: Hay [FOODON:03301763] + keywords: + - animal + - diet + - food + - source + slot_uri: MIXS:0001130 + range: string + multivalued: true + animal_feed_equip: + annotations: + Expected_value: + tag: Expected_value + value: EOL:0001757 + description: Description of the feeding equipment used for livestock. This field + accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757). + Multiple terms can be separated by pipes + title: animal feeding equipment + examples: + - value: self feeding [EOL:0001645]| straight feed trough [EOL:0001661] + keywords: + - animal + - equipment + slot_uri: MIXS:0001113 + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + animal_group_size: + description: The number of food animals of the same species that are maintained + together as a unit, i.e. a herd or flock + title: food animal group size + examples: + - value: '80' + keywords: + - animal + - food + - size + slot_uri: MIXS:0001129 + range: integer + animal_housing: + description: Description of the housing system of the livestock. This field accepts + terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605) + title: animal housing system + examples: + - value: pen rearing system [EOL:0001636] + keywords: + - animal + slot_uri: MIXS:0001180 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + animal_intrusion: + description: Identification of animals intruding on the sample or sample site + including invertebrates (such as pests or pollinators) and vertebrates (such + as wildlife or domesticated animals). This field accepts terms under organism + (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification + numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms + can be separated by pipes + title: animal intrusion near sample source + examples: + - value: Thripidae [NCBITaxon:45053] + keywords: + - animal + - sample + - source + slot_uri: MIXS:0001114 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + animal_sex: + description: The sex and reproductive status of the food animal + title: food animal source sex category + examples: + - value: castrated male + keywords: + - animal + - food + - source + slot_uri: MIXS:0001249 + range: AnimalSexEnum + annot: + annotations: + Expected_value: + tag: Expected_value + value: name of tool or pipeline used, or annotation source description + description: Tool used for annotation, or for cases where annotation was provided + by a community jamboree or model organism database rather than by a specific + submitter + title: annotation + examples: + - value: prokka + in_subset: + - sequencing + slot_uri: MIXS:0000059 + range: string + annual_precpt: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter + description: The average of all annual precipitation values known, or an estimated + equivalent value derived by such methods as regional indexes or Isohyetal maps + title: mean annual precipitation + keywords: + - mean + slot_uri: MIXS:0000644 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + annual_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Mean annual temperature + title: mean annual temperature + examples: + - value: 12.5 degree Celsius + keywords: + - mean + - temperature + slot_uri: MIXS:0000642 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + antibiotic_regm: + annotations: + Expected_value: + tag: Expected_value + value: antibiotic name;antibiotic amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: milligram + description: Information about treatment involving antibiotic administration; + should include the name of antibiotic, amount administered, treatment regimen + including how many times the treatment was repeated, how long each treatment + lasted, and the start and end time of the entire treatment; can include multiple + antibiotic regimens + title: antibiotic regimen + examples: + - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000553 + multivalued: true + api: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degrees API + description: 'API gravity is a measure of how heavy or light a petroleum liquid + is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. + 31.1 API)' + title: API gravity + examples: + - value: 31.1 API + slot_uri: MIXS:0000157 + range: string + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + arch_struc: + description: An architectural structure is a human-made, free-standing, immobile + outdoor construction + title: architectural structure + examples: + - value: shed + slot_uri: MIXS:0000774 + range: ArchStrucEnum + area_samp_size: + annotations: + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: centimeter + description: The total amount or size (volume (ml), mass (g) or area (m2) ) of + sample collected + title: area sampled size + examples: + - value: 12 centimeter x 12 centimeter + keywords: + - area + - sample + - size + string_serialization: '{integer} {unit} x {integer} {unit}' + slot_uri: MIXS:0001255 + aromatics_pc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: aromatics wt% + slot_uri: MIXS:0000133 + range: string + recommended: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + asphaltenes_pc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: asphaltenes wt% + slot_uri: MIXS:0000135 + range: string + recommended: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + assembly_name: + annotations: + Expected_value: + tag: Expected_value + value: name and version of assembly + description: Name/version of the assembly provided by the submitter that is used + in the genome browsers and in the community + title: assembly name + examples: + - value: HuRef, JCVI_ISG_i3_1.0 + in_subset: + - sequencing + string_serialization: '{text} {text}' + slot_uri: MIXS:0000057 + assembly_qual: + description: 'The assembly quality category is based on sets of criteria outlined + for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated, + contiguous sequence per replicon without gaps or ambiguities with a consensus + error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments + where gaps span repetitive regions. Presence of the large subunit (LSU) RNA, + small subunit (SSU) and the presence of 5.8S rRNA or 5S rRNA depending on whether + it is a eukaryotic or prokaryotic genome, respectively. Medium Quality Draft:Many + fragments with little to no review of assembly other than reporting of standard + assembly statistics. Low Quality Draft:Many fragments with little to no review + of assembly other than reporting of standard assembly statistics. Assembly + statistics include, but are not limited to total assembly size, number of contigs, + contig N50/L50, and maximum contig length. For MIUVIG; Finished: Single, validated, + contiguous sequence per replicon without gaps or ambiguities, with extensive + manual review and editing to annotate putative gene functions and transcriptional + units. High-quality draft genome: One or multiple fragments, totaling 90% + of the expected genome or replicon sequence or predicted complete. Genome fragment(s): + One or multiple fragments, totalling < 90% of the expected genome or replicon + sequence, or for which no genome size could be estimated' + title: assembly quality + examples: + - value: High-quality draft genome + in_subset: + - sequencing + keywords: + - quality + slot_uri: MIXS:0000056 + range: AssemblyQualEnum + assembly_software: + description: Tool(s) used for assembly, including version number and parameters + title: assembly software + examples: + - value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters + otherwise + in_subset: + - sequencing + keywords: + - software + slot_uri: MIXS:0000058 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + associated_resource: + annotations: + Expected_value: + tag: Expected_value + value: reference to resource + description: A related resource that is referenced, cited, or otherwise associated + to the sequence + title: relevant electronic resources + examples: + - value: http://www.earthmicrobiome.org/ + in_subset: + - sequencing + keywords: + - resource + string_serialization: '{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0000091 + recommended: true + multivalued: true + association_duration: + annotations: + Preferred_unit: + tag: Preferred_unit + value: year, day, hour + description: Time spent in host of the symbiotic organism at the time of sampling; + relevant scale depends on symbiotic organism and study + title: duration of association with the host + keywords: + - duration + - host + - host. + - period + slot_uri: MIXS:0001299 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + atmospheric_data: + annotations: + Expected_value: + tag: Expected_value + value: atmospheric data name;measurement value + description: Measurement of atmospheric data; can include multiple data + title: atmospheric data + examples: + - value: wind speed;9 knots + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0001097 + multivalued: true + avg_dew_point: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The average of dew point measures taken at the beginning of every + hour over a 24 hour period on the sampling day + title: average dew point + examples: + - value: 25.5 degree Celsius + keywords: + - average + slot_uri: MIXS:0000141 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + avg_occup: + description: Daily average occupancy of room. Indicate the number of person(s) + daily occupying the sampling room + title: average daily occupancy + keywords: + - average + slot_uri: MIXS:0000775 + range: float + avg_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The average of temperatures taken at the beginning of every hour + over a 24 hour period on the sampling day + title: average temperature + examples: + - value: 12.5 degree Celsius + keywords: + - average + - temperature + slot_uri: MIXS:0000142 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bac_prod: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day + description: Bacterial production in the water column measured by isotope uptake + title: bacterial production + examples: + - value: 5 milligram per cubic meter per day + keywords: + - production + slot_uri: MIXS:0000683 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bac_resp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day, micromole oxygen per liter per + hour + description: Measurement of bacterial respiration in the water column + title: bacterial respiration + examples: + - value: 300 micromole oxygen per liter per hour + slot_uri: MIXS:0000684 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bacteria_carb_prod: + description: Measurement of bacterial carbon production + title: bacterial carbon production + examples: + - value: 2.53 microgram per liter per hour + keywords: + - carbon + - production + slot_uri: MIXS:0000173 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bacterial_density: + annotations: + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight + description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043) + title: bacteria density + examples: + - value: 10 colony forming units per gram dry weight + keywords: + - density + slot_uri: MIXS:0001194 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + barometric_press: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millibar + description: Force per unit area exerted against a surface by the weight of air + above that surface + title: barometric pressure + examples: + - value: 5 millibar + keywords: + - pressure + slot_uri: MIXS:0000096 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + basin: + description: Name of the basin (e.g. Campos) + title: basin name + examples: + - value: Campos + slot_uri: MIXS:0000290 + range: string + required: true + bathroom_count: + description: The number of bathrooms in the building + title: bathroom count + examples: + - value: '1' + keywords: + - count + slot_uri: MIXS:0000776 + range: integer + bedroom_count: + description: The number of bedrooms in the building + title: bedroom count + examples: + - value: '2' + keywords: + - count + slot_uri: MIXS:0000777 + range: integer + benzene: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of benzene in the sample + title: benzene + slot_uri: MIXS:0000153 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bin_param: + description: The parameters that have been applied during the extraction of genomes + from metagenomic datasets + title: binning parameters + examples: + - value: coverage + description: was 'coverage and kmer' + - value: kmer + description: was coverage and kmer + in_subset: + - sequencing + keywords: + - parameter + slot_uri: MIXS:0000077 + range: BinParamEnum + bin_software: + annotations: + Expected_value: + tag: Expected_value + value: names and versions of software(s) used + description: Tool(s) used for the extraction of genomes from metagenomic datasets, + where possible include a product ID (PID) of the tool(s) used + title: binning software + examples: + - value: MetaCluster-TA (RRID:SCR_004599), MaxBin (biotools:maxbin) + in_subset: + - sequencing + keywords: + - software + string_serialization: '{software};{version}{PID}' + slot_uri: MIXS:0000078 + biochem_oxygen_dem: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Amount of dissolved oxygen needed by aerobic biological organisms + in a body of water to break down organic material present in a given water + sample at certain temperature over a specific time period + title: biochemical oxygen demand + keywords: + - oxygen + slot_uri: MIXS:0000653 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + biocide: + annotations: + Expected_value: + tag: Expected_value + value: name;name;timestamp + description: List of biocides (commercial name of product and supplier) and date + of administration + title: biocide administration + examples: + - value: ALPHA 1427;Baker Hughes;2008-01-23 + keywords: + - administration + string_serialization: '{text};{text};{timestamp}' + slot_uri: MIXS:0001011 + recommended: true + biocide_admin_method: + annotations: + Expected_value: + tag: Expected_value + value: measurement value;frequency;duration;duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Method of biocide administration (dose, frequency, duration, time + elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; + 3 days) + title: biocide administration method + keywords: + - administration + - method + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}' + slot_uri: MIXS:0000456 + recommended: true + biocide_used: + annotations: + Expected_value: + tag: Expected_value + value: commercial name of biocide, active ingredient in biocide or class + of biocide + description: Substance intended for preventing, neutralizing, destroying, repelling, + or mitigating the effects of any pest or microorganism; that inhibits the growth, + reproduction, and activity of organisms, including fungal cells; decreases + the number of fungi or pests present; deters microbial growth and degradation + of other ingredients in the formulation. Indicate the biocide used on the location + where the sample was taken. Multiple terms can be separated by pipes + title: biocide + examples: + - value: Quaternary ammonium compound|SterBac + slot_uri: MIXS:0001258 + range: string + multivalued: true + biol_stat: + description: The level of genome modification + title: biological status + examples: + - value: natural + keywords: + - status + slot_uri: MIXS:0000858 + range: BiolStatEnum + biomass: + annotations: + Expected_value: + tag: Expected_value + value: biomass type;measurement value + Preferred_unit: + tag: Preferred_unit + value: ton, kilogram, gram + description: Amount of biomass; should include the name for the part of biomass + measured, e.g. Microbial, total. Can include multiple measurements + title: biomass + examples: + - value: total;20 gram + keywords: + - biomass + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000174 + multivalued: true + biotic_regm: + description: Information about treatment(s) involving use of biotic factors, + such as bacteria, viruses or fungi + title: biotic regimen + examples: + - value: sample inoculated with Rhizobium spp. Culture + keywords: + - regimen + slot_uri: MIXS:0001038 + range: string + multivalued: true + biotic_relationship: + description: Description of relationship(s) between the subject organism and + other organism(s) it is associated with. E.g., parasite on species X; mutualist + with species Y. The target organism is the subject of the relationship, and + the other organism(s) is the object + title: observed biotic relationship + examples: + - value: free living + in_subset: + - nucleic acid sequence source + keywords: + - observed + - relationship + slot_uri: MIXS:0000028 + range: BioticRelationshipEnum + birth_control: + annotations: + Expected_value: + tag: Expected_value + value: medication name + description: Specification of birth control medication used + title: birth control + slot_uri: MIXS:0000286 + range: string + bishomohopanol: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, microgram per gram + description: Concentration of bishomohopanol + title: bishomohopanol + examples: + - value: 14 microgram per liter + slot_uri: MIXS:0000175 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + blood_blood_disord: + description: History of blood disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + hematopoietic system disease (https://disease-ontology.org/?id=DOID:74) + title: blood/blood disorder + keywords: + - disorder + slot_uri: MIXS:0000271 + range: string + multivalued: true + blood_press_diast: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter mercury + description: Resting diastolic blood pressure, measured as mm mercury + title: host blood pressure diastolic + keywords: + - host + - host. + - pressure + slot_uri: MIXS:0000258 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + blood_press_syst: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter mercury + description: Resting systolic blood pressure, measured as mm mercury + title: host blood pressure systolic + keywords: + - host + - host. + - pressure + slot_uri: MIXS:0000259 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + bromide: + annotations: + Preferred_unit: + tag: Preferred_unit + value: parts per million + description: Concentration of bromide + title: bromide + examples: + - value: 0.05 parts per million + slot_uri: MIXS:0000176 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + build_docs: + description: The building design, construction and operation documents + title: design, construction, and operation documents + examples: + - value: maintenance plans + keywords: + - documents + slot_uri: MIXS:0000787 + range: BuildDocsEnum + build_occup_type: + description: The primary function for which a building or discrete part of a + building is intended to be used + title: building occupancy type + examples: + - value: market + keywords: + - type + slot_uri: MIXS:0000761 + range: BuildOccupTypeEnum + required: true + multivalued: true + building_setting: + description: A location (geography) where a building is set + title: building setting + examples: + - value: rural + slot_uri: MIXS:0000768 + range: BuildingSettingEnum + required: true + built_struc_age: + annotations: + Preferred_unit: + tag: Preferred_unit + value: year + description: The age of the built structure since construction + title: built structure age + examples: + - value: 15 years + keywords: + - age + slot_uri: MIXS:0000145 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + built_struc_set: + description: The characterization of the location of the built structure as high + or low human density + title: built structure setting + examples: + - value: rural + slot_uri: MIXS:0000778 + range: BuiltStrucSetEnum + built_struc_type: + description: A physical structure that is a body or assemblage of bodies in space + to form a system capable of supporting loads + title: built structure type + keywords: + - type + slot_uri: MIXS:0000721 + range: string + calcium: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, micromole per liter, parts per million + description: Concentration of calcium in the sample + title: calcium + examples: + - value: 0.2 micromole per liter + slot_uri: MIXS:0000432 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + carb_dioxide: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per million + description: Carbon dioxide (gas) amount or concentration at the time of sampling + title: carbon dioxide + examples: + - value: 410 parts per million + keywords: + - carbon + slot_uri: MIXS:0000097 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + carb_monoxide: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per million + description: Carbon monoxide (gas) amount or concentration at the time of sampling + title: carbon monoxide + examples: + - value: 0.1 parts per million + keywords: + - carbon + slot_uri: MIXS:0000098 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + carb_nitro_ratio: + annotations: + Expected_value: + tag: Expected_value + value: measurement value + description: Ratio of amount or concentrations of carbon to nitrogen + title: carbon/nitrogen ratio + examples: + - value: '0.417361111' + keywords: + - carbon + - nitrogen + - ratio + string_serialization: '{float}:{float}' + slot_uri: MIXS:0000310 + range: float + ceil_area: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The area of the ceiling space within the room + title: ceiling area + examples: + - value: 25 square meter + keywords: + - area + - ceiling + slot_uri: MIXS:0000148 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ceil_cond: + description: The physical condition of the ceiling at the time of sampling; photos + or video preferred; use drawings to indicate location of damaged areas + title: ceiling condition + examples: + - value: damaged + keywords: + - ceiling + - condition + slot_uri: MIXS:0000779 + range: DamagedEnum + ceil_finish_mat: + description: The type of material used to finish a ceiling + title: ceiling finish material + examples: + - value: stucco + keywords: + - ceiling + - material + slot_uri: MIXS:0000780 + range: CeilFinishMatEnum + ceil_struc: + description: The construction format of the ceiling + title: ceiling structure + examples: + - value: concrete + keywords: + - ceiling + slot_uri: MIXS:0000782 + range: CeilStrucEnum + ceil_texture: + description: The feel, appearance, or consistency of a ceiling surface + title: ceiling texture + examples: + - value: popcorn + keywords: + - ceiling + - texture + slot_uri: MIXS:0000783 + range: CeilingWallTextureEnum + ceil_thermal_mass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the ceiling to provide inertia against temperature + fluctuations. Generally this means concrete that is exposed. A metal deck that + supports a concrete slab will act thermally as long as it is exposed to room + air flow + title: ceiling thermal mass + keywords: + - ceiling + - mass + slot_uri: MIXS:0000143 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ceil_type: + description: The type of ceiling according to the ceiling's appearance or construction + title: ceiling type + examples: + - value: coffered + keywords: + - ceiling + - type + slot_uri: MIXS:0000784 + range: CeilTypeEnum + ceil_water_mold: + description: Signs of the presence of mold or mildew on the ceiling + title: ceiling signs of water/mold + examples: + - value: presence of mold visible + keywords: + - ceiling + slot_uri: MIXS:0000781 + range: MoldVisibilityEnum + chem_administration: + annotations: + Expected_value: + tag: Expected_value + value: CHEBI;timestamp + description: List of chemical compounds administered to the host or site where + sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can + include multiple compounds. For chemical entities of biological interest ontology + (chebi) (v 163), http://purl.bioontology.org/ontology/chebi + title: chemical administration + examples: + - value: agar [CHEBI:2509];2018-05-11T20:00Z + keywords: + - administration + string_serialization: '{termLabel} [{termID}];{timestamp}' + slot_uri: MIXS:0000751 + multivalued: true + chem_mutagen: + annotations: + Expected_value: + tag: Expected_value + value: mutagen name;mutagen amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Treatment involving use of mutagens; should include the name of + mutagen, amount administered, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple mutagen regimens + title: chemical mutagen + examples: + - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000555 + multivalued: true + chem_oxygen_dem: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: A measure of the capacity of water to consume oxygen during the + decomposition of organic matter and the oxidation of inorganic chemicals such + as ammonia and nitrite + title: chemical oxygen demand + keywords: + - oxygen + slot_uri: MIXS:0000656 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + chem_treat_method: + annotations: + Expected_value: + tag: Expected_value + value: measurement value;frequency;duration;duration + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Method of chemical administration(dose, frequency, duration, time + elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 + hr; 0 days) + title: chemical treatment method + keywords: + - method + - treatment + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}' + slot_uri: MIXS:0000457 + chem_treatment: + annotations: + Expected_value: + tag: Expected_value + value: name;name;timestamp + description: List of chemical compounds administered upstream the sampling location + where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, + demulsifiers, and other production chemicals etc.). The commercial name of + the product and name of the supplier should be provided. The date of administration + should also be included + title: chemical treatment + examples: + - value: ACCENT 1125;DOW;2010-11-17 + keywords: + - treatment + string_serialization: '{text};{text};{timestamp}' + slot_uri: MIXS:0001012 + chimera_check: + description: Tool(s) used for chimera checking, including version number and + parameters, to discover and remove chimeric sequences. A chimeric sequence + is comprised of two or more phylogenetically distinct parent sequences + title: chimera check software + examples: + - value: uchime;v4.1;default parameters + in_subset: + - sequencing + keywords: + - software + slot_uri: MIXS:0000052 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + chloride: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of chloride in the sample + title: chloride + examples: + - value: 5000 milligram per liter + slot_uri: MIXS:0000429 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + chlorophyll: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter, microgram per liter + description: Concentration of chlorophyll + title: chlorophyll + examples: + - value: 5 milligram per cubic meter + slot_uri: MIXS:0000177 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + climate_environment: + description: Treatment involving an exposure to a particular climate; treatment + regimen including how many times the treatment was repeated, how long each + treatment lasted, and the start and end time of the entire treatment; can include + multiple climates + title: climate environment + examples: + - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - environment + slot_uri: MIXS:0001040 + range: string + multivalued: true + coll_site_geo_feat: + annotations: + Expected_value: + tag: Expected_value + value: ENVO:00000002 or ENVO:00000070 + description: 'Text or terms that describe the geographic feature where the food + sample was obtained by the researcher. This field accepts selected terms listed + under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002), + for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011} + or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002]; + or human construction (http://purl.obolibrary.org/obo/ENVO_00000070)' + title: collection site geographic feature + examples: + - value: farm [ENVO:00000078] + keywords: + - feature + - geographic + - site + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001183 + required: true + collection_date: + description: 'The time of sampling, either as an instance (single point in time) + or interval. In case no exact time is available, the date/time can be right + truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; + 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant' + title: collection date + examples: + - value: '2013-03-25T12:42:31+01:00' + in_subset: + - environment + keywords: + - date + slot_uri: MIXS:0000011 + range: datetime + required: true + compl_appr: + annotations: + Expected_value: + tag: Expected_value + value: text + description: The approach used to determine the completeness of a given genomic + assembly, which would typically make use of a set of conserved marker genes + or a closely related reference genome. For UViG completeness, include reference + genome or group used, and contig feature suggesting a complete genome + title: completeness approach + examples: + - value: other + description: was other UViG length compared to the average length + of reference genomes from the P22virus genus (NCBI RefSeq v83) + in_subset: + - sequencing + slot_uri: MIXS:0000071 + range: ComplApprEnum + compl_score: + annotations: + Expected_value: + tag: Expected_value + value: quality;percent completeness + description: 'Completeness score is typically based on either the fraction of + markers found as compared to a database or the percent of a genome found as + compared to a closely related reference genome. High Quality Draft: >90%, Medium + Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated + completeness scores' + title: completeness score + examples: + - value: med;60% + in_subset: + - sequencing + keywords: + - score + string_serialization: '[high|med|low];{percentage}' + slot_uri: MIXS:0000069 + compl_software: + annotations: + Expected_value: + tag: Expected_value + value: names and versions of software(s) used + description: Tools used for completion estimate, i.e. checkm, anvi'o, busco + title: completeness software + examples: + - value: checkm + in_subset: + - sequencing + keywords: + - software + string_serialization: '{software};{version}' + slot_uri: MIXS:0000070 + conduc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliSiemens per centimeter + description: Electrical conductivity of water + title: conductivity + examples: + - value: 10 milliSiemens per centimeter + slot_uri: MIXS:0000692 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + cons_food_stor_dur: + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: The storage duration of the food commodity by the consumer, prior + to onset of illness or sample collection. Indicate the timepoint written in + ISO 8601 format + title: food stored by consumer (storage duration) + examples: + - value: P5D + keywords: + - consumer + - duration) + - food + - storage + slot_uri: MIXS:0001195 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + cons_food_stor_temp: + annotations: + Expected_value: + tag: Expected_value + value: text or measurement value + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which food commodity was stored by the consumer, + prior to onset of illness or sample collection + title: food stored by consumer (storage temperature) + examples: + - value: 4 degree Celsius + keywords: + - consumer + - food + - storage + - temperature + string_serialization: '{float} {unit}|{text}' + slot_uri: MIXS:0001196 + cons_purch_date: + description: The date a food product was purchased by consumer + title: purchase date + examples: + - value: '2013-03-25T12:42:31+01:00' + keywords: + - date + slot_uri: MIXS:0001197 + range: datetime + cons_qty_purchased: + description: The quantity of food purchased by consumer + title: quantity purchased + examples: + - value: 5 cans + keywords: + - quantity + slot_uri: MIXS:0001198 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + contam_score: + description: 'The contamination score is based on the fraction of single-copy + genes that are observed more than once in a query genome. The following scores + are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, + Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to + be deposited into any of the public databases' + title: contamination score + examples: + - value: '0.01' + in_subset: + - sequencing + keywords: + - score + slot_uri: MIXS:0000072 + range: float + contam_screen_input: + description: The type of sequence data used as input + title: contamination screening input + examples: + - value: contigs + in_subset: + - sequencing + slot_uri: MIXS:0000005 + range: ContamScreenInputEnum + contam_screen_param: + annotations: + Expected_value: + tag: Expected_value + value: enumeration;value or name + description: Specific parameters used in the decontamination sofware, such as + reference database, coverage, and kmers. Combinations of these parameters may + also be used, i.e. kmer and coverage, or reference database and kmer + title: contamination screening parameters + examples: + - value: kmer + in_subset: + - sequencing + keywords: + - parameter + string_serialization: '[ref db|kmer|coverage|combination];{text|integer}' + slot_uri: MIXS:0000073 + cool_syst_id: + description: The cooling system identifier + title: cooling system identifier + examples: + - value: '12345' + keywords: + - identifier + slot_uri: MIXS:0000785 + range: integer + crop_rotation: + annotations: + Expected_value: + tag: Expected_value + value: crop rotation status;schedule + description: Whether or not crop is rotated, and if yes, rotation schedule + title: history/crop rotation + examples: + - value: yes;R2/2017-01-01/2018-12-31/P6M + keywords: + - history + slot_uri: MIXS:0000318 + crop_yield: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram per metre square + description: Amount of crop produced per unit or area of land + title: crop yield + examples: + - value: 570 kilogram per metre square + keywords: + - crop + slot_uri: MIXS:0001116 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + cult_isol_date: + description: The datetime marking the end of a process in which a sample yields + a positive result for the target microbial analyte(s) in the form of an isolated + colony or colonies + title: culture isolation date + examples: + - value: '2018-05-11T10:00:00+01:00' + keywords: + - culture + - date + - isolation + slot_uri: MIXS:0001181 + range: datetime + cult_result: + description: Any result of a bacterial culture experiment reported as a binary + assessment such as positive/negative, active/inactive + title: culture result + examples: + - value: positive + keywords: + - culture + slot_uri: MIXS:0001117 + range: CultResultEnum + cult_result_org: + description: Taxonomic information about the cultured organism(s) + title: culture result organism + examples: + - value: Listeria monocytogenes [NCIT:C86502] + keywords: + - culture + - organism + slot_uri: MIXS:0001118 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + cult_root_med: + annotations: + Expected_value: + tag: Expected_value + value: name, PMID,DOI or url + description: Name or reference for the hydroponic or in vitro culture rooting + medium; can be the name of a commonly used medium or reference to a specific + medium, e.g. Murashige and Skoog medium. If the medium has not been formally + published, use the rooting medium descriptors + title: culture rooting medium + examples: + - value: http://himedialabs.com/TD/PT158.pdf + keywords: + - culture + string_serialization: '{text}|{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0001041 + cult_target: + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C14250 or NCBI taxid or culture independent + description: The target microbial analyte in terms of investigation scope. This + field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy + title: culture target microbial analyte + examples: + - value: Listeria monocytogenes [NCIT:C86502] + keywords: + - culture + - microbial + - target + string_serialization: '{termLabel} [{termID}]|{integer}' + slot_uri: MIXS:0001119 + multivalued: true + cur_land_use: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Present state of sample site + title: current land use + examples: + - value: conifers + keywords: + - land + - use + string_serialization: '[cities|farmstead|industrial areas|roads/railroads|rock|sand|gravel|mudflats|salt + flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste + areas|small grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands + (grass,sedges,rushes)|tundra (mosses,lichens)|rangeland|pastureland (grasslands + used for livestock grazing)|hayland|meadows (grasses,alfalfa,fescue,bromegrass,timothy)|shrub + land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)|successional + shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)|shrub + crops (blueberries,nursery ornamentals,filberts)|vine crops (grapes)|conifers + (e.g. pine,spruce,fir,cypress)|hardwoods (e.g. oak,hickory,elm,aspen)|intermixed + hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen + forest receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent + water body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery + trees)]' + slot_uri: MIXS:0001080 + cur_vegetation: + annotations: + Expected_value: + tag: Expected_value + value: current vegetation type + description: Vegetation classification from one or more standard classification + systems, or agricultural crop + title: current vegetation + keywords: + - vegetation + slot_uri: MIXS:0000312 + range: string + cur_vegetation_meth: + description: Reference or method used in vegetation classification + title: current vegetation method + keywords: + - method + - vegetation + slot_uri: MIXS:0000314 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + date_extr_weath: + description: Date of unusual weather events that may have affected microbial + populations. Multiple terms can be separated by pipes, listed in reverse chronological + order + title: extreme weather date + examples: + - value: '2013-03-25T12:42:31+01:00' + keywords: + - date + - extreme + - weather + slot_uri: MIXS:0001142 + range: datetime + multivalued: true + date_last_rain: + description: The date of the last time it rained + title: date last rain + examples: + - value: '2013-03-25T12:42:31+01:00' + keywords: + - date + - rain + slot_uri: MIXS:0000786 + range: datetime + decontam_software: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Tool(s) used in contamination screening + title: decontamination software + examples: + - value: anvi'o + in_subset: + - sequencing + keywords: + - software + string_serialization: '[checkm/refinem|anvi''o|prodege|bbtools:decontaminate.sh|acdc|combination]' + slot_uri: MIXS:0000074 + density: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram per cubic meter, gram per cubic centimeter + description: Density of the sample, which is its mass per unit volume (aka volumetric + mass density) + title: density + examples: + - value: 1000 kilogram per cubic meter + keywords: + - density + slot_uri: MIXS:0000435 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + depos_env: + description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). + If "other" is specified, please propose entry in "additional info" field + title: depositional environment + keywords: + - environment + slot_uri: MIXS:0000992 + range: DeposEnvEnum + recommended: true + depth: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: The vertical distance below local surface. For sediment or soil + samples depth is measured from sediment or soil surface, respectively. Depth + can be reported as an interval for subsurface samples + title: depth + in_subset: + - environment + keywords: + - depth + slot_uri: MIXS:0000018 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + dermatology_disord: + description: History of dermatology disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + skin disease (https://disease-ontology.org/?id=DOID:37) + title: dermatology disorder + keywords: + - disorder + slot_uri: MIXS:0000284 + range: string + multivalued: true + detec_type: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Type of UViG detection + title: detection type + examples: + - value: independent sequence (UViG) + in_subset: + - sequencing + keywords: + - type + string_serialization: '[independent sequence (UViG)|provirus (UpViG)]' + slot_uri: MIXS:0000084 + dew_point: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The temperature to which a given parcel of humid air must be cooled, + at constant barometric pressure, for water vapor to condense into water + title: dew point + examples: + - value: 22 degree Celsius + slot_uri: MIXS:0000129 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diet_last_six_month: + annotations: + Expected_value: + tag: Expected_value + value: diet change;current diet + description: Specification of major diet changes in the last six months, if yes + the change should be specified + title: major diet change in last six months + examples: + - value: yes;vegetarian diet + keywords: + - diet + - months + string_serialization: '{boolean};{text}' + slot_uri: MIXS:0000266 + dietary_claim_use: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03510023 + description: These descriptors are used either for foods intended for special + dietary use as defined in 21 CFR 105 or for foods that have special characteristics + indicated in the name or labeling. This field accepts terms listed under dietary + claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms + can be separated by one or more pipes, but please consider limiting this list + to the most prominent dietary claim or use + title: dietary claim or use + examples: + - value: No preservatives [FOODON:03510113] + keywords: + - diet + - use + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001199 + multivalued: true + diether_lipids: + annotations: + Expected_value: + tag: Expected_value + value: diether lipid name;measurement value + Preferred_unit: + tag: Preferred_unit + value: nanogram per liter + description: Concentration of diether lipids; can include multiple types of diether + lipids + title: diether lipids + examples: + - value: 0.2 nanogram per liter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000178 + multivalued: true + diss_carb_dioxide: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter + description: Concentration of dissolved carbon dioxide in the sample or liquid + portion of the sample + title: dissolved carbon dioxide + examples: + - value: 5 milligram per liter + keywords: + - carbon + - dissolved + slot_uri: MIXS:0000436 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_hydrogen: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of dissolved hydrogen + title: dissolved hydrogen + examples: + - value: 0.3 micromole per liter + keywords: + - dissolved + slot_uri: MIXS:0000179 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_inorg_carb: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, milligram per liter, parts per million + description: Dissolved inorganic carbon concentration in the sample, typically + measured after filtering the sample using a 0.45 micrometer filter + title: dissolved inorganic carbon + examples: + - value: 2059 micromole per kilogram + keywords: + - carbon + - dissolved + - inorganic + slot_uri: MIXS:0000434 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_inorg_nitro: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Concentration of dissolved inorganic nitrogen + title: dissolved inorganic nitrogen + examples: + - value: 761 micromole per liter + keywords: + - dissolved + - inorganic + - nitrogen + slot_uri: MIXS:0000698 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_inorg_phosp: + description: Concentration of dissolved inorganic phosphorus in the sample + title: dissolved inorganic phosphorus + examples: + - value: 56.5 micromole per liter + keywords: + - dissolved + - inorganic + - phosphorus + slot_uri: MIXS:0000106 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_iron: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Concentration of dissolved iron in the sample + title: dissolved iron + keywords: + - dissolved + slot_uri: MIXS:0000139 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_org_carb: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter + description: Concentration of dissolved organic carbon in the sample, liquid + portion of the sample, or aqueous phase of the fluid + title: dissolved organic carbon + examples: + - value: 197 micromole per liter + keywords: + - carbon + - dissolved + - organic + slot_uri: MIXS:0000433 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_org_nitro: + description: Dissolved organic nitrogen concentration measured as; total dissolved + nitrogen - NH4 - NO3 - NO2 + title: dissolved organic nitrogen + examples: + - value: 0.05 micromole per liter + keywords: + - dissolved + - nitrogen + - organic + slot_uri: MIXS:0000162 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_oxygen: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per kilogram, milligram per liter + description: Concentration of dissolved oxygen + title: dissolved oxygen + examples: + - value: 175 micromole per kilogram + keywords: + - dissolved + - oxygen + slot_uri: MIXS:0000119 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + diss_oxygen_fluid: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per kilogram, milligram per liter + description: Concentration of dissolved oxygen in the oil field produced fluids + as it contributes to oxgen-corrosion and microbial activity (e.g. Mic) + title: dissolved oxygen in fluids + keywords: + - dissolved + - oxygen + slot_uri: MIXS:0000438 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + dominant_hand: + description: Dominant hand of the subject + title: dominant hand + examples: + - value: right + slot_uri: MIXS:0000944 + range: DominantHandEnum + door_comp_type: + description: The composite type of the door + title: door type, composite + examples: + - value: revolving + keywords: + - door + - type + slot_uri: MIXS:0000795 + range: DoorCompTypeEnum + door_cond: + description: The phsical condition of the door + title: door condition + examples: + - value: new + keywords: + - condition + - door + slot_uri: MIXS:0000788 + range: DamagedRupturedEnum + door_direct: + description: The direction the door opens + title: door direction of opening + examples: + - value: inward + keywords: + - direction + - door + slot_uri: MIXS:0000789 + range: DoorDirectEnum + door_loc: + description: The relative location of the door in the room + title: door location + examples: + - value: north + keywords: + - door + - location + slot_uri: MIXS:0000790 + range: CompassDirections8Enum + door_mat: + description: The material the door is composed of + title: door material + examples: + - value: wood + keywords: + - door + - material + slot_uri: MIXS:0000791 + range: DoorMatEnum + door_move: + description: The type of movement of the door + title: door movement + examples: + - value: swinging + keywords: + - door + slot_uri: MIXS:0000792 + range: DoorMoveEnum + door_size: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The size of the door + title: door area or size + examples: + - value: 2.5 square meter + keywords: + - area + - door + - size + slot_uri: MIXS:0000158 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + door_type: + description: The type of door material + title: door type + examples: + - value: wooden + keywords: + - door + - type + slot_uri: MIXS:0000794 + range: DoorTypeEnum + door_type_metal: + description: The type of metal door + title: door type, metal + examples: + - value: hollow + keywords: + - door + - type + slot_uri: MIXS:0000796 + range: DoorTypeMetalEnum + door_type_wood: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The type of wood door + title: door type, wood + examples: + - value: battened + keywords: + - door + - type + string_serialization: '[bettened and ledged|battened|ledged and braced|battened|ledged + and framed|battened|ledged, braced and frame|framed and paneled|glashed or + sash|flush|louvered|wire gauged]' + slot_uri: MIXS:0000797 + door_water_mold: + description: Signs of the presence of mold or mildew on a door + title: door signs of water/mold + examples: + - value: presence of mold visible + keywords: + - door + slot_uri: MIXS:0000793 + range: MoldVisibilityEnum + douche: + description: Date of most recent douche + title: douche + examples: + - value: '2013-03-25T12:42:31+01:00' + slot_uri: MIXS:0000967 + range: datetime + down_par: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microEinstein per square meter per second, microEinstein per square + centimeter per second + description: Visible waveband radiance and irradiance measurements in the water + column + title: downward PAR + examples: + - value: 28.71 microEinstein per square meter per second + slot_uri: MIXS:0000703 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + drainage_class: + description: Drainage classification from a standard system such as the USDA + system + title: drainage classification + examples: + - value: well + keywords: + - classification + slot_uri: MIXS:0001085 + range: DrainageClassEnum + drawings: + description: The buildings architectural drawings; if design is chosen, indicate + phase-conceptual, schematic, design development, and construction documents + title: drawings + examples: + - value: sketch + keywords: + - drawings + slot_uri: MIXS:0000798 + range: DrawingsEnum + drug_usage: + annotations: + Expected_value: + tag: Expected_value + value: drug name;frequency + description: Any drug used by subject and the frequency of usage; can include + multiple drugs used + title: drug usage + examples: + - value: Lipitor;2/day + keywords: + - drug + - use + string_serialization: '{text};{integer}/[year|month|week|day|hour]' + slot_uri: MIXS:0000894 + multivalued: true + efficiency_percent: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Percentage of volatile solids removed from the anaerobic digestor + title: efficiency percent + keywords: + - percent + slot_uri: MIXS:0000657 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + elev: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Elevation of the sampling site is its height above a fixed reference + point, most commonly the mean sea level. Elevation is mainly used when referring + to points on the earth's surface, while altitude is used for points above the + surface, such as an aircraft in flight or a spacecraft in orbit + title: elevation + examples: + - value: 100 meter + in_subset: + - environment + keywords: + - elevation + slot_uri: MIXS:0000093 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + elevator: + description: The number of elevators within the built structure + title: elevator count + examples: + - value: '2' + keywords: + - count + slot_uri: MIXS:0000799 + range: integer + emulsions: + annotations: + Expected_value: + tag: Expected_value + value: emulsion name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram per liter + description: Amount or concentration of substances such as paints, adhesives, + mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion + types + title: emulsions + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000660 + multivalued: true + encoded_traits: + annotations: + Expected_value: + tag: Expected_value + value: 'for plasmid: antibiotic resistance; for phage: converting genes' + description: Should include key traits like antibiotic resistance or xenobiotic + degradation phenotypes for plasmids, converting genes for phage + title: encoded traits + examples: + - value: beta-lactamase class A + in_subset: + - nucleic acid sequence source + slot_uri: MIXS:0000034 + range: string + enrichment_protocol: + description: The microbiological workflow or protocol followed to test for the + presence or enumeration of the target microbial analyte(s). Please provide + a PubMed or DOI reference for published protocols + title: enrichment protocol + examples: + - value: 'BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria' + keywords: + - enrichment + - protocol + slot_uri: MIXS:0001177 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + env_broad_scale: + description: 'Report the major environmental system the sample or specimen came + from. The system(s) identified should have a coarse spatial grain, to provide + the general environmental context of where the sampling was done (e.g. in the + desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. + EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' + title: broad-scale environmental context + examples: + - value: rangeland biome [ENVO:01000247] + in_subset: + - environment + keywords: + - context + - environmental + slot_uri: MIXS:0000012 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + env_local_scale: + annotations: + Expected_value: + tag: Expected_value + value: Environmental entities having causal influences upon the entity at + time of sampling + description: 'Report the entity or entities which are in the sample or specimen + s local vicinity and which you believe have significant causal influences on + your sample or specimen. We recommend using EnvO terms which are of smaller + spatial grain than your entry for env_broad_scale. Terms, such as anatomical + sites, from other OBO Library ontologies which interoperate with EnvO (e.g. + UBERON) are accepted in this field. EnvO documentation about how to use the + field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' + title: local environmental context + examples: + - value: hillside [ENVO:01000333] + in_subset: + - environment + keywords: + - context + - environmental + slot_uri: MIXS:0000013 + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + env_medium: + description: 'Report the environmental material(s) immediately surrounding the + sample or specimen at the time of sampling. We recommend using subclasses of + ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). + EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS + . Terms from other OBO ontologies are permissible as long as they reference + mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities + (e.g. a tree, a leaf, a table top)' + title: environmental medium + examples: + - value: bluegrass field soil [ENVO:00005789] + in_subset: + - environment + keywords: + - environmental + slot_uri: MIXS:0000014 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + env_monitoring_zone: + annotations: + Expected_value: + tag: Expected_value + value: ENVO + description: An environmental monitoring zone is a formal designation as part + of an environmental monitoring program, in which areas of a food production + facility are categorized, commonly as zones 1-4, based on likelihood or risk + of foodborne pathogen contamination. This field accepts terms listed under + food production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO). + Please add a term to indicate the environmental monitoring zone the sample + was taken from + title: food production environmental monitoring zone + examples: + - value: Zone 1 + keywords: + - environmental + - food + - production + slot_uri: MIXS:0001254 + range: string + escalator: + description: The number of escalators within the built structure + title: escalator count + examples: + - value: '4' + keywords: + - count + slot_uri: MIXS:0000800 + range: integer + estimated_size: + annotations: + Expected_value: + tag: Expected_value + value: number of base pairs + description: The estimated size of the genome prior to sequencing. Of particular + importance in the sequencing of (eukaryotic) genome which could remain in draft + form for a long or unspecified period + title: estimated size + examples: + - value: 300000 bp + in_subset: + - nucleic acid sequence source + keywords: + - size + string_serialization: '{integer} bp' + slot_uri: MIXS:0000024 + ethnicity: + annotations: + Expected_value: + tag: Expected_value + value: text recommend from Wikipedia list + description: A category of people who identify with each other, usually on the + basis of presumed similarities such as a common language, ancestry, history, + society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups + title: ethnicity + examples: + - value: native american + slot_uri: MIXS:0000895 + range: string + multivalued: true + ethylbenzene: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of ethylbenzene in the sample + title: ethylbenzene + slot_uri: MIXS:0000155 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + exp_duct: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The amount of exposed ductwork in the room + title: exposed ductwork + slot_uri: MIXS:0000144 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + exp_pipe: + description: The number of exposed pipes in the room + title: exposed pipes + keywords: + - pipes + slot_uri: MIXS:0000220 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + experimental_factor: + annotations: + Expected_value: + tag: Expected_value + value: text or EFO and/or OBI + description: Variable aspects of an experiment design that can be used to describe + an experiment, or set of experiments, in an increasingly detailed manner. This + field accepts ontology terms from Experimental Factor Ontology (EFO) and/or + Ontology for Biomedical Investigations (OBI) + title: experimental factor + examples: + - value: time series design [EFO:0001779] + in_subset: + - investigation + keywords: + - experimental + - factor + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0000008 + range: string + multivalued: true + pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$ + ext_door: + description: The number of exterior doors in the built structure + title: exterior door count + keywords: + - count + - door + - exterior + slot_uri: MIXS:0000170 + range: integer + ext_wall_orient: + description: The orientation of the exterior wall + title: orientations of exterior wall + examples: + - value: northwest + keywords: + - exterior + - wall + slot_uri: MIXS:0000817 + range: CompassDirections8Enum + ext_window_orient: + description: The compass direction the exterior window of the room is facing + title: orientations of exterior window + examples: + - value: southwest + keywords: + - exterior + - window + slot_uri: MIXS:0000818 + range: CompassDirections8Enum + extr_weather_event: + description: Unusual weather events that may have affected microbial populations. + Multiple terms can be separated by pipes, listed in reverse chronological order + title: extreme weather event + examples: + - value: hail + keywords: + - event + - extreme + - weather + slot_uri: MIXS:0001141 + range: ExtrWeatherEventEnum + multivalued: true + extrachrom_elements: + description: Do plasmids exist of significant phenotypic consequence (e.g. ones + that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids + (borrelia has 15+ plasmids) + title: extrachromosomal elements + examples: + - value: '5' + in_subset: + - nucleic acid sequence source + slot_uri: MIXS:0000023 + range: integer + extreme_event: + description: Unusual physical events that may have affected microbial populations + title: history/extreme events + keywords: + - event + - history + slot_uri: MIXS:0000320 + range: datetime + facility_type: + description: Establishment details about the type of facility where the sample + was taken. This is independent of the specific product(s) within the facility + title: facility type + examples: + - value: manufacturing-processing + keywords: + - facility + - type + slot_uri: MIXS:0001252 + range: FacilityTypeEnum + multivalued: true + fao_class: + description: Soil classification from the FAO World soil distribution from International + Soil Reference and Information Centre (ISRIC). The list of available soil classifications + can be found at https://www.isric.org/explore/world-soil-distribution + title: soil_taxonomic/FAO classification + examples: + - value: Luvisols + keywords: + - classification + slot_uri: MIXS:0001083 + range: FaoClassEnum + farm_equip: + description: List of equipment used for planting, fertilization, harvesting, + irrigation, land levelling, residue management, weeding or transplanting during + the growing season. This field accepts terms listed under agricultural implement + (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated + by pipes + title: farm equipment used + examples: + - value: combine harvester [AGRO:00000473] + keywords: + - equipment + - farm + - use + slot_uri: MIXS:0001126 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + farm_equip_san: + annotations: + Expected_value: + tag: Expected_value + value: text or commercial name of sanitizer or class of sanitizer or active + ingredient in sanitizer + Preferred_unit: + tag: Preferred_unit + value: parts per million + description: Method used to sanitize growing and harvesting equipment. This can + including type and concentration of sanitizing solution. Multiple terms can + be separated by one or more pipes + title: farm equipment sanitization + examples: + - value: hot water pressure wash, hypochlorite solution, 50 parts per million + keywords: + - equipment + - farm + string_serialization: '{text} {float} {unit}' + slot_uri: MIXS:0001124 + multivalued: true + farm_equip_san_freq: + description: The number of times farm equipment is cleaned. Frequency of cleaning + might be on a Daily basis, Weekly, Monthly, Quarterly or Annually + title: farm equipment sanitization frequency + examples: + - value: Biweekly + keywords: + - equipment + - farm + - frequency + slot_uri: MIXS:0001125 + range: string + farm_equip_shared: + description: List of planting, growing or harvesting equipment shared with other + farms. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). + Multiple terms can be separated by pipes + title: equipment shared with other farms + examples: + - value: combine harvester [AGRO:00000473] + keywords: + - equipment + - farm + slot_uri: MIXS:0001123 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + farm_water_source: + description: Source of water used on the farm for irrigation of crops or watering + of livestock + title: farm watering water source + examples: + - value: well + description: was water well (ENVO:01000002) + keywords: + - farm + - source + - water + slot_uri: MIXS:0001110 + range: FarmWaterSourceEnum + recommended: true + feat_pred: + description: Method used to predict UViGs features such as ORFs, integration + site, etc + title: feature prediction + examples: + - value: Prodigal;2.6.3;default parameters + in_subset: + - sequencing + keywords: + - feature + - predict + slot_uri: MIXS:0000061 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + ferm_chem_add: + annotations: + Expected_value: + tag: Expected_value + value: chemical ingredient + description: Any chemicals that are added to the fermentation process to achieve + the desired final product + title: fermentation chemical additives + examples: + - value: salt + keywords: + - fermentation + string_serialization: '{float} {unit}' + slot_uri: MIXS:0001185 + recommended: true + multivalued: true + ferm_chem_add_perc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: The amount of chemical added to the fermentation process + title: fermentation chemical additives percentage + examples: + - value: '0.01' + keywords: + - fermentation + - percent + slot_uri: MIXS:0001186 + range: float + recommended: true + multivalued: true + ferm_headspace_oxy: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: The amount of headspace oxygen in a fermentation vessel + title: fermentation headspace oxygen + examples: + - value: '0.05' + keywords: + - fermentation + - oxygen + slot_uri: MIXS:0001187 + range: float + recommended: true + ferm_medium: + description: The growth medium used for the fermented food fermentation process, + which supplies the required nutrients. Usually this includes a carbon and + nitrogen source, water, micronutrients and chemical additives + title: fermentation medium + examples: + - value: molasses + keywords: + - fermentation + slot_uri: MIXS:0001188 + range: string + recommended: true + ferm_pH: + description: The pH of the fermented food fermentation process + title: fermentation pH + examples: + - value: '4.5' + keywords: + - fermentation + - ph + slot_uri: MIXS:0001189 + range: float + recommended: true + ferm_rel_humidity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: The relative humidity of the fermented food fermentation process + title: fermentation relative humidity + comments: + - percent or float? + examples: + - value: 95% + keywords: + - fermentation + - humidity + - relative + slot_uri: MIXS:0001190 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ferm_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The temperature of the fermented food fermentation process + title: fermentation temperature + examples: + - value: 22 degrees Celsius + keywords: + - fermentation + - temperature + slot_uri: MIXS:0001191 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ferm_time: + annotations: + Preferred_unit: + tag: Preferred_unit + value: days + description: The time duration of the fermented food fermentation process + title: fermentation time + examples: + - value: P10D + keywords: + - fermentation + - time + slot_uri: MIXS:0001192 + range: string + recommended: true + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + ferm_vessel: + description: The type of vessel used for containment of the fermentation + title: fermentation vessel + examples: + - value: steel drum + keywords: + - fermentation + slot_uri: MIXS:0001193 + range: string + recommended: true + fertilizer_admin: + description: Type of fertilizer or amendment added to the soil or water for the + purpose of improving substrate health and quality for plant growth. This field + accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062). + Multiple terms may apply and can be separated by pipes, listing in reverse + chronological order + title: fertilizer administration + examples: + - value: fish emulsion [AGRO:00000082] + keywords: + - administration + slot_uri: MIXS:0001127 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + fertilizer_date: + description: Date of administration of soil amendment or fertilizer. Multiple + terms may apply and can be separated by pipes, listing in reverse chronological + order + title: fertilizer administration date + examples: + - value: '2018-05-11T10:00:00+01:00' + keywords: + - administration + - date + slot_uri: MIXS:0001128 + range: datetime + fertilizer_regm: + annotations: + Expected_value: + tag: Expected_value + value: fertilizer name;fertilizer amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving the use of fertilizers; should + include the name of fertilizer, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple fertilizer + regimens + title: fertilizer regimen + examples: + - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000556 + multivalued: true + field: + description: Name of the hydrocarbon field (e.g. Albacora) + title: field name + slot_uri: MIXS:0000291 + range: string + recommended: true + filter_type: + description: A device which removes solid particulates or airborne molecular + contaminants + title: filter type + examples: + - value: HEPA + keywords: + - filter + - type + slot_uri: MIXS:0000765 + range: FilterTypeEnum + required: true + multivalued: true + fire: + description: Historical and/or physical evidence of fire + title: history/fire + keywords: + - history + slot_uri: MIXS:0001086 + range: datetime + fireplace_type: + description: A firebox with chimney + title: fireplace type + examples: + - value: wood burning + keywords: + - type + slot_uri: MIXS:0000802 + range: FireplaceTypeEnum + flooding: + description: Historical and/or physical evidence of flooding + title: history/flooding + keywords: + - history + slot_uri: MIXS:0000319 + range: datetime + floor_age: + annotations: + Preferred_unit: + tag: Preferred_unit + value: years, weeks, days + description: The time period since installment of the carpet or flooring + title: floor age + keywords: + - age + - floor + slot_uri: MIXS:0000164 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + floor_area: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The area of the floor space within the room + title: floor area + keywords: + - area + - floor + slot_uri: MIXS:0000165 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + floor_cond: + description: The physical condition of the floor at the time of sampling; photos + or video preferred; use drawings to indicate location of damaged areas + title: floor condition + examples: + - value: new + keywords: + - condition + - floor + slot_uri: MIXS:0000803 + range: DamagedEnum + floor_count: + description: The number of floors in the building, including basements and mechanical + penthouse + title: floor count + keywords: + - count + - floor + slot_uri: MIXS:0000225 + range: integer + floor_finish_mat: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The floor covering type; the finished surface that is walked on + title: floor finish material + examples: + - value: carpet + keywords: + - floor + - material + string_serialization: '[tile|wood strip or parquet|carpet|rug|laminate wood|lineoleum|vinyl + composition tile|sheet vinyl|stone|bamboo|cork|terrazo|concrete|none;specify + unfinished|sealed|clear finish|paint]' + slot_uri: MIXS:0000804 + floor_struc: + description: Refers to the structural elements and subfloor upon which the finish + flooring is installed + title: floor structure + examples: + - value: concrete + keywords: + - floor + slot_uri: MIXS:0000806 + range: FloorStrucEnum + floor_thermal_mass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the floor to provide inertia against temperature + fluctuations + title: floor thermal mass + keywords: + - floor + - mass + slot_uri: MIXS:0000166 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + floor_water_mold: + description: Signs of the presence of mold or mildew in a room + title: floor signs of water/mold + examples: + - value: ceiling discoloration + keywords: + - floor + slot_uri: MIXS:0000805 + range: FloorWaterMoldEnum + fluor: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram chlorophyll a per cubic meter, volts + description: Raw or converted fluorescence of water + title: fluorescence + examples: + - value: 2.5 volts + slot_uri: MIXS:0000704 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + foetal_health_stat: + description: Specification of foetal health status, should also include abortion + title: amniotic fluid/foetal health status + keywords: + - status + slot_uri: MIXS:0000275 + range: string + food_additive: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03412972 + description: A substance or substances added to food to maintain or improve safety + and freshness, to improve or maintain nutritional value, or improve taste, + texture and appearance. This field accepts terms listed under food additive + (http://purl.obolibrary.org/obo/FOODON_03412972). Multiple terms can be separated + by one or more pipes, but please consider limiting this list to the top 5 ingredients + listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors + title: food additive + examples: + - value: xanthan gum [FOODON:03413321] + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001200 + multivalued: true + food_allergen_label: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03510213 + description: A label indication that the product contains a recognized allergen. + This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213) + title: food allergen labeling + examples: + - value: food allergen labelling about crustaceans and products thereof [FOODON:03510215] + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001201 + multivalued: true + food_clean_proc: + description: The process of cleaning food to separate other environmental materials + from the food source. Multiple terms can be separated by pipes + title: food cleaning process + examples: + - value: rinsed with water + description: was rinsed with water|scrubbed with brush + - value: scrubbed with brush + description: was rinsed with water|scrubbed with brush + keywords: + - food + - process + slot_uri: MIXS:0001182 + range: FoodCleanProcEnum + food_contact_surf: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03500010 + description: The specific container or coating materials in direct contact with + the food. Multiple values can be assigned. This field accepts terms listed + under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010) + title: food contact surface + examples: + - value: cellulose acetate [FOODON:03500034] + keywords: + - food + - surface + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001131 + multivalued: true + food_contain_wrap: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03490100 + description: Type of container or wrapping defined by the main container material, + the container form, and the material of the liner lids or ends. Also type of + container or wrapping by form; prefer description by material first, then by + form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100) + title: food container or wrapping + examples: + - value: Plastic shrink-pack [FOODON:03490137] + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001132 + food_cooking_proc: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03450002 + description: The transformation of raw food by the application of heat. This + field accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002) + title: food cooking process + examples: + - value: food blanching [FOODON:03470175] + keywords: + - food + - process + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001202 + multivalued: true + food_dis_point: + description: 'A reference to a place on the Earth, by its name or by its geographical + location that refers to a distribution point along the food chain. This field + accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). + Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations + in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing + Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012' + title: food distribution point geographic location + examples: + - value: 'USA: Delmarva, Peninsula' + keywords: + - food + - geographic + - location + slot_uri: MIXS:0001203 + range: string + multivalued: true + pattern: '^.*: .*, .*$' + structured_pattern: + syntax: '^{text}: {text}, {text}$' + interpolated: true + partial_match: true + food_dis_point_city: + annotations: + Expected_value: + tag: Expected_value + value: GAZ:00000448 + description: 'A reference to a place on the Earth, by its name or by its geographical + location that refers to a distribution point along the food chain. This field + accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). + Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations + in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing + Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012' + title: food distribution point geographic location (city) + examples: + - value: Atlanta[GAZ:00004445] + keywords: + - food + - geographic + - location + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001204 + multivalued: true + food_harvest_proc: + description: A harvesting process is a process which takes in some food material + from an individual or community of plant or animal organisms in a given context + and time, and outputs a precursor or consumable food product. This may include + a part of an organism or the whole, and may involve killing the organism + title: Food harvesting process + examples: + - value: hand-picked + keywords: + - food + - process + slot_uri: MIXS:0001133 + range: string + multivalued: true + food_ingredient: + annotations: + Expected_value: + tag: Expected_value + value: FOODON + description: In this field, please list individual ingredients for multi-component + food [FOODON:00002501] and simple foods that is not captured in food_type. Please + use terms that are present in FoodOn. Multiple terms can be separated by one + or more pipes |, but please consider limiting this list to the top 5 ingredients + listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors + title: food ingredient + examples: + - value: bean (whole) [FOODON:00002753] + keywords: + - food + - ingredient + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001205 + multivalued: true + food_name_status: + description: A datum indicating that use of a food product name is regulated + in some legal jurisdiction. This field accepts terms listed under food product + name legal status (http://purl.obolibrary.org/obo/FOODON_03530087) + title: food product name legal status + examples: + - value: protected geographic indication [FOODON:03530256] + keywords: + - food + - product + - status + slot_uri: MIXS:0001206 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_origin: + description: A reference to a place on the Earth, by its name or by its geographical + location that describes the origin of the food commodity, either in terms of + its cultivation or production. This field accepts terms listed under geographic + location (http://purl.obolibrary.org/obo/GAZ_00000448) + title: food product origin geographic location + examples: + - value: 'USA: Delmarva, Peninsula' + keywords: + - food + - geographic + - location + - product + slot_uri: MIXS:0001207 + range: string + pattern: '^.*: .*, .*$' + structured_pattern: + syntax: '^{text}: {text}, {text}$' + interpolated: true + partial_match: true + food_pack_capacity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: grams + description: The maximum number of product units within a package + title: food package capacity + examples: + - value: 454 grams + keywords: + - food + - package + slot_uri: MIXS:0001208 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + food_pack_integrity: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03530218 + description: A term label and term id to describe the state of the packing material + and text to explain the exact condition. This field accepts terms listed under + food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218) + title: food packing medium integrity + examples: + - value: food packing medium compromised [FOODON:00002517] + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001209 + multivalued: true + food_pack_medium: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03480020 + description: The medium in which the food is packed for preservation and handling + or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. + The packing medium may provide a controlled environment for the food. It may + also serve to improve palatability and consumer appeal. This includes edible + packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide), + vacuum packed, or packed with aerosol propellant. This field accepts terms + under food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). + Multiple terms may apply and can be separated by pipes + title: food packing medium + keywords: + - food + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001134 + multivalued: true + food_preserv_proc: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03470107 + description: The methods contributing to the prevention or retardation of microbial, + enzymatic or oxidative spoilage and thus to the extension of shelf life. This + field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107) + title: food preservation process + examples: + - value: food slow freezing [FOODON:03470128] + keywords: + - food + - process + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001135 + multivalued: true + food_prior_contact: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03530077 + description: The material the food contacted (e.g., was processed in) prior to + packaging. This field accepts terms listed under material of contact prior + to food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the + proper descriptor is not listed please use text to describe the material of + contact prior to food packaging + title: material of contact prior to food packaging + examples: + - value: processed in stainless steel container [FOODON:03530081] + keywords: + - food + - material + - prior + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001210 + multivalued: true + food_prod: + description: Descriptors of the food production system or of the agricultural + environment and growing conditions related to the farm production system, such + as wild caught, organic, free-range, industrial, dairy, beef, domestic or + cultivated food production. This field accepts terms listed under food production + (http://purl.obolibrary.org/obo/FOODON_03530206). Multiple terms may apply + and can be separated by pipes + title: food production system characteristics + examples: + - value: organic plant cultivation [FOODON:03530253] + keywords: + - food + - production + slot_uri: MIXS:0001211 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_prod_char: + description: Descriptors of the food production system such as wild caught, free-range, + organic, free-range, industrial, dairy, beef + title: food production characteristics + examples: + - value: wild caught + keywords: + - food + - production + slot_uri: MIXS:0001136 + range: string + multivalued: true + food_prod_synonym: + description: Other names by which the food product is known by (e.g., regional + or non-English names) + title: food product synonym + examples: + - value: pinot gris + keywords: + - food + - product + slot_uri: MIXS:0001212 + range: string + multivalued: true + food_product_qual: + description: Descriptors for describing food visually or via other senses, which + is useful for tasks like food inspection where little prior knowledge of how + the food came to be is available. Some terms like "food (frozen)" are both + a quality descriptor and the output of a process. This field accepts terms + listed under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454) + title: food product by quality + examples: + - value: raw [FOODON:03311126] + keywords: + - food + - product + - quality + slot_uri: MIXS:0001213 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_product_type: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:00001002 or FOODON:03309997 + description: A food product type is a class of food products that is differentiated + by its food composition (e.g., single- or multi-ingredient), processing and/or + consumption characteristics. This does not include brand name products but + it may include generic food dish categories. This field accepts terms under + food product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms + related to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). + If the proper descriptor is not listed please use text to describe the food + type. Multiple terms can be separated by one or more pipes + title: food product type + keywords: + - food + - product + - type + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001184 + food_quality_date: + annotations: + Expected_value: + tag: Expected_value + value: enumeration, date + description: The date recommended for the use of the product while at peak quality, + this date is not a reflection of safety unless used on infant formula this + date is not a reflection of safety and is typically labeled on a food product + as "best if used by," best by," "use by," or "freeze by." + title: food quality date + examples: + - value: best by 2020-05-24 + keywords: + - date + - food + - quality + string_serialization: '[best by|best if used by|freeze by|use by]; date' + slot_uri: MIXS:0001178 + food_source: + annotations: + Expected_value: + tag: Expected_value + value: FOODON term + description: Type of plant or animal from which the food product or its major + ingredient is derived or a chemical food source [FDA CFSAN 1995] + title: food source + keywords: + - food + - source + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0001139 + food_source_age: + annotations: + Preferred_unit: + tag: Preferred_unit + value: days + description: The age of the food source host organim. Depending on the type of + host organism, age may be more appropriate to report in days, weeks, or years + title: food source age + comments: + - ISO 8601 period or measurement value? + examples: + - value: 6 months + keywords: + - age + - food + - source + slot_uri: MIXS:0001251 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + food_trace_list: + description: The FDA is proposing to establish additional traceability recordkeeping + requirements (beyond what is already required in existing regulations) for + persons who manufacture, process, pack, or hold foods the Agency has designated + for inclusion on the Food Traceability List. The Food Traceability List (FTL) + identifies the foods for which the additional traceability records described + in the proposed rule would be required. The term Food Traceability List (FTL) + refers not only to the foods specifically listed (https://www.fda.gov/media/142303/download), + but also to any foods that contain listed foods as ingredients + title: food traceability list category + examples: + - value: tropical tree fruits + keywords: + - food + slot_uri: MIXS:0001214 + range: FoodTraceListEnum + food_trav_mode: + description: A descriptor for the method of movement of food commodity along + the food distribution system. This field accepts terms listed under travel + mode (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor + is not listed please use text to describe the mode of travel. Multiple terms + can be separated by one or more pipes + title: food shipping transportation method + examples: + - value: train travel [GENEPIO:0001060] + keywords: + - food + - method + - transport + slot_uri: MIXS:0001137 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + food_trav_vehic: + annotations: + Expected_value: + tag: Expected_value + value: ENVO:01000604 + description: A descriptor for the mobile machine which is used to transport food + commodities along the food distribution system. This field accepts terms listed + under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper + descrptor is not listed please use text to describe the mode of travel. Multiple + terms can be separated by one or more pipes + title: food shipping transportation vehicle + examples: + - value: aircraft [ENVO:01001488]|car [ENVO:01000605] + keywords: + - food + - transport + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001138 + multivalued: true + food_treat_proc: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03460111 + description: Used to specifically characterize a food product based on the treatment + or processes applied to the product or any indexed ingredient. The processes + include adding, substituting or removing components or modifying the food or + component, e.g., through fermentation. Multiple values can be assigned. This + fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111) + title: food treatment process + examples: + - value: gluten removal process [FOODON:03460750] + keywords: + - food + - process + - treatment + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001140 + multivalued: true + freq_clean: + description: The number of times the sample location is cleaned. Frequency of + cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually + title: frequency of cleaning + examples: + - value: Daily + keywords: + - frequency + slot_uri: MIXS:0000226 + range: FreqCleanEnum + freq_cook: + description: The number of times a meal is cooked per week + title: frequency of cooking + keywords: + - frequency + slot_uri: MIXS:0000227 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + fungicide_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of fungicides; should + include the name of fungicide, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple fungicide + regimens + title: fungicide regimen + examples: + - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + slot_uri: MIXS:0000557 + range: string + multivalued: true + furniture: + description: The types of furniture present in the sampled room + title: furniture + examples: + - value: chair + slot_uri: MIXS:0000807 + range: FurnitureEnum + gaseous_environment: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Use of conditions with differing gaseous environments; should include + the name of gaseous compound, amount administered, treatment duration, interval + and total experimental duration; can include multiple gaseous environment regimens + title: gaseous environment + examples: + - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - environment + slot_uri: MIXS:0000558 + range: string + multivalued: true + gaseous_substances: + annotations: + Expected_value: + tag: Expected_value + value: gaseous substance name;measurement value + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Amount or concentration of substances such as hydrogen sulfide, + carbon dioxide, methane, etc.; can include multiple substances + title: gaseous substances + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000661 + multivalued: true + gastrointest_disord: + description: History of gastrointestinal tract disorders; can include multiple + disorders. History of blood disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + gastrointestinal system disease (https://disease-ontology.org/?id=DOID:77) + title: gastrointestinal tract disorder + keywords: + - disorder + slot_uri: MIXS:0000280 + range: string + multivalued: true + gender_restroom: + description: The gender type of the restroom + title: gender of restroom + examples: + - value: male + slot_uri: MIXS:0000808 + range: GenderRestroomEnum + genetic_mod: + annotations: + Expected_value: + tag: Expected_value + value: PMID, DOI, URL or text + description: Genetic modifications of the genome of an organism, which may occur + naturally by spontaneous mutation, or be introduced by some experimental means, + e.g. specification of a transgene or the gene knocked-out or details of transient + transfection + title: genetic modification + examples: + - value: aox1A transgenic + string_serialization: '{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0000859 + geo_loc_name: + description: The geographical origin of the sample as defined by the country + or sea name followed by specific region name. Country or sea names should be + chosen from the INSDC country list (http://insdc.org/country.html), or the + GAZ ontology (http://purl.bioontology.org/ontology/GAZ) + title: geographic location (country and/or sea,region) + examples: + - value: 'USA: Maryland, Bethesda' + in_subset: + - environment + keywords: + - geographic + - location + slot_uri: MIXS:0000010 + range: string + required: true + pattern: '^.*: .*, .*$' + structured_pattern: + syntax: '^{text}: {text}, {text}$' + interpolated: true + partial_match: true + gestation_state: + description: Specification of the gestation state + title: amniotic fluid/gestation state + slot_uri: MIXS:0000272 + range: string + glucosidase_act: + annotations: + Preferred_unit: + tag: Preferred_unit + value: mol per liter per hour + description: Measurement of glucosidase activity + title: glucosidase activity + examples: + - value: 5 mol per liter per hour + slot_uri: MIXS:0000137 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + gravidity: + description: Whether or not subject is gravid, and if yes date due or date post-conception, + specifying which is used + title: gravidity + examples: + - value: yes;due date:2018-05-11 + string_serialization: '{boolean};{timestamp}' + slot_uri: MIXS:0000875 + gravity: + annotations: + Expected_value: + tag: Expected_value + value: gravity factor value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: meter per square second, g + description: Information about treatment involving use of gravity factor to study + various types of responses in presence, absence or modified levels of gravity; + treatment regimen including how many times the treatment was repeated, how + long each treatment lasted, and the start and end time of the entire treatment; + can include multiple treatments + title: gravity + examples: + - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000559 + multivalued: true + growth_facil: + annotations: + Expected_value: + tag: Expected_value + value: free text or CO + description: 'Type of facility where the sampled plant was grown; controlled + vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, + field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research' + title: growth facility + examples: + - value: Growth chamber [CO_715:0000189] + keywords: + - facility + - growth + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001043 + growth_habit: + description: Characteristic shape, appearance or growth form of a plant species + title: growth habit + examples: + - value: spreading + keywords: + - growth + slot_uri: MIXS:0001044 + range: GrowthHabitEnum + growth_hormone_regm: + annotations: + Expected_value: + tag: Expected_value + value: growth hormone name;growth hormone amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of growth hormones; should + include the name of growth hormone, amount administered, treatment regimen + including how many times the treatment was repeated, how long each treatment + lasted, and the start and end time of the entire treatment; can include multiple + growth hormone regimens + title: growth hormone regimen + examples: + - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - growth + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000560 + multivalued: true + growth_medium: + description: A liquid or gel containing nutrients, salts, and other factors formulated + to support the growth of microorganisms, cells, or plants (National Cancer + Institute Thesaurus). The name of the medium used to grow the microorganism + title: growth medium + examples: + - value: LB broth + keywords: + - growth + slot_uri: MIXS:0001108 + range: string + gynecologic_disord: + description: History of gynecological disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + female reproductive system disease (https://disease-ontology.org/?id=DOID:229) + title: gynecological disorder + keywords: + - disorder + slot_uri: MIXS:0000288 + range: string + multivalued: true + hall_count: + description: The total count of hallways and cooridors in the built structure + title: hallway/corridor count + keywords: + - corridor + - count + - hallway + slot_uri: MIXS:0000228 + range: integer + handidness: + description: The handidness of the individual sampled + title: handidness + examples: + - value: right handedness + slot_uri: MIXS:0000809 + range: HandidnessEnum + hc_produced: + description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, + etc). If "other" is specified, please propose entry in "additional info" field + title: hydrocarbon type produced + examples: + - value: Gas + keywords: + - hydrocarbon + - type + slot_uri: MIXS:0000989 + range: HcProducedEnum + required: true + hcr: + description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" + HCR defined as a natural environmental feature containing large amounts of + hydrocarbons at high concentrations potentially suitable for commercial exploitation. + This term should not be confused with the Hydrocarbon Occurrence term which + also includes hydrocarbon-rich environments with currently limited commercial + interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, + please propose entry in "additional info" field + title: hydrocarbon resource type + examples: + - value: Oil Sand + keywords: + - hydrocarbon + - resource + - type + slot_uri: MIXS:0000988 + range: HcrEnum + required: true + hcr_fw_salinity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Original formation water salinity (prior to secondary recovery e.g. + Waterflooding) expressed as TDS + title: formation water salinity + keywords: + - salinity + - water + slot_uri: MIXS:0000406 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + hcr_geol_age: + description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). + If "other" is specified, please propose entry in "additional info" field' + title: hydrocarbon resource geological age + examples: + - value: Silurian + keywords: + - age + - hydrocarbon + - resource + slot_uri: MIXS:0000993 + range: GeolAgeEnum + recommended: true + hcr_pressure: + annotations: + Preferred_unit: + tag: Preferred_unit + value: atmosphere, kilopascal + description: Original pressure of the hydrocarbon resource + title: hydrocarbon resource original pressure + keywords: + - hydrocarbon + - pressure + - resource + slot_uri: MIXS:0000395 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{float} *- *{float} {unit}$ + interpolated: true + partial_match: true + hcr_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Original temperature of the hydrocarbon resource + title: hydrocarbon resource original temperature + examples: + - value: 150-295 degree Celsius + keywords: + - hydrocarbon + - resource + - temperature + slot_uri: MIXS:0000393 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{float} *- *{float} {unit}$ + interpolated: true + partial_match: true + heat_cool_type: + description: Methods of conditioning or heating a room or building + title: heating and cooling system type + examples: + - value: heat pump + keywords: + - type + slot_uri: MIXS:0000766 + range: HeatCoolTypeEnum + required: true + multivalued: true + heat_deliv_loc: + description: The location of heat delivery within the room + title: heating delivery locations + examples: + - value: north + keywords: + - delivery + - location + - locations + slot_uri: MIXS:0000810 + range: CompassDirections8Enum + heat_sys_deliv_meth: + description: The method by which the heat is delivered through the system + title: heating system delivery method + examples: + - value: radiant + keywords: + - delivery + - method + slot_uri: MIXS:0000812 + range: HeatSysDelivMethEnum + heat_system_id: + description: The heating system identifier + title: heating system identifier + keywords: + - identifier + slot_uri: MIXS:0000833 + range: integer + heavy_metals: + annotations: + Expected_value: + tag: Expected_value + value: heavy metal name;measurement value unit + Preferred_unit: + tag: Preferred_unit + value: microgram per gram + description: Heavy metals present in the sequenced sample and their concentrations. + For multiple heavy metals and concentrations, add multiple copies of this field + title: extreme_unusual_properties/heavy metals + examples: + - value: mercury;0.09 micrograms per gram + keywords: + - extreme + - properties + - unusual + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000652 + multivalued: true + heavy_metals_meth: + description: Reference or method used in determining heavy metals + title: extreme_unusual_properties/heavy metals method + keywords: + - extreme + - method + - properties + - unusual + slot_uri: MIXS:0000343 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + height_carper_fiber: + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter + description: The average carpet fiber height in the indoor environment + title: height carpet fiber mat + keywords: + - height + slot_uri: MIXS:0000167 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + herbicide_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of herbicides; information + about treatment involving use of growth hormones; should include the name of + herbicide, amount administered, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include multiple regimens + title: herbicide regimen + examples: + - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + slot_uri: MIXS:0000561 + range: string + multivalued: true + horizon_meth: + description: Reference or method used in determining the horizon + title: horizon method + keywords: + - horizon + - method + slot_uri: MIXS:0000321 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + host_age: + annotations: + Preferred_unit: + tag: Preferred_unit + value: year, day, hour + description: Age of host at the time of sampling; relevant scale depends on species + and study, e.g. Could be seconds for amoebae or centuries for trees + title: host age + keywords: + - age + - host + - host. + slot_uri: MIXS:0000255 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_body_habitat: + description: Original body habitat where the sample was obtained from + title: host body habitat + keywords: + - body + - habitat + - host + - host. + slot_uri: MIXS:0000866 + range: string + host_body_mass_index: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram per square meter + description: Body mass index, calculated as weight/(height)squared + title: host body-mass index + examples: + - value: 22 kilogram per square meter + keywords: + - host + - host. + slot_uri: MIXS:0000317 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_body_product: + annotations: + Expected_value: + tag: Expected_value + value: FMA or UBERON + description: Substance produced by the body, e.g. Stool, mucus, where the sample + was obtained from. Use terms from the foundational model of anatomy ontology + (fma) or Uber-anatomy ontology (UBERON) + title: host body product + examples: + - value: mucus [FMA:66938] + keywords: + - body + - host + - host. + - product + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000888 + host_body_site: + annotations: + Expected_value: + tag: Expected_value + value: FMA or UBERON + description: Name of body site where the sample was obtained from, such as a + specific organ or tissue (tongue, lung etc...). Use terms from the foundational + model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON) + title: host body site + keywords: + - body + - host + - site + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000867 + host_body_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Core body temperature of the host when sample was collected + title: host body temperature + keywords: + - body + - host + - host. + - temperature + slot_uri: MIXS:0000274 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_cellular_loc: + description: 'The localization of the symbiotic host organism within the host + from which it was sampled: e.g. intracellular if the symbiotic host organism + is localized within the cells or extracellular if the symbiotic host organism + is localized outside of cells' + title: host cellular location + examples: + - value: extracellular + keywords: + - host + - host. + - location + slot_uri: MIXS:0001313 + range: HostCellularLocEnum + recommended: true + host_color: + description: The color of host + title: host color + keywords: + - host + - host. + slot_uri: MIXS:0000260 + range: string + host_common_name: + annotations: + Preferred_unit: + tag: Preferred_unit + value: '' + description: Common name of the host + title: host common name + keywords: + - host + - host. + slot_uri: MIXS:0000248 + range: string + host_dependence: + description: Type of host dependence for the symbiotic host organism to its host + title: host dependence + examples: + - value: obligate + keywords: + - host + - host. + slot_uri: MIXS:0001315 + range: HostDependenceEnum + required: true + host_diet: + description: Type of diet depending on the host, for animals omnivore, herbivore + etc., for humans high-fat, meditteranean etc.; can include multiple diet types + title: host diet + keywords: + - diet + - host + - host. + slot_uri: MIXS:0000869 + range: string + multivalued: true + host_disease_stat: + annotations: + Expected_value: + tag: Expected_value + value: disease name or Disease Ontology term + description: List of diseases with which the host has been diagnosed; can include + multiple diagnoses. The value of the field depends on host; for humans the + terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, + non-human host diseases are free text + title: host disease status + in_subset: + - nucleic acid sequence source + keywords: + - disease + - host + - host. + - status + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0000031 + host_dry_mass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Measurement of dry mass + title: host dry mass + examples: + - value: 500 gram + keywords: + - dry + - host + - host. + - mass + slot_uri: MIXS:0000257 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_fam_rel: + annotations: + Expected_value: + tag: Expected_value + value: relationship type;arbitrary identifier + description: Relationships to other hosts in the same study; can include multiple + relationships + title: host family relationship + keywords: + - family + - host + - host. + - relationship + string_serialization: '{text};{text}' + slot_uri: MIXS:0000872 + multivalued: true + host_genotype: + description: Observed genotype + title: host genotype + keywords: + - host + - host. + slot_uri: MIXS:0000365 + range: string + host_growth_cond: + description: Literature reference giving growth conditions of the host + title: host growth conditions + examples: + - value: https://academic.oup.com/icesjms/article/68/2/349/617247 + keywords: + - condition + - growth + - host + - host. + slot_uri: MIXS:0000871 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + host_height: + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter, millimeter, meter + description: The height of subject + title: host height + keywords: + - height + - host + - host. + slot_uri: MIXS:0000264 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_hiv_stat: + annotations: + Expected_value: + tag: Expected_value + value: HIV status;HAART initiation status + description: HIV status of subject, if yes HAART initiation status should also + be indicated as [YES or NO] + title: host HIV status + examples: + - value: yes;yes + keywords: + - host + - host. + - status + string_serialization: '{boolean};{boolean}' + slot_uri: MIXS:0000265 + host_infra_spec_name: + description: Taxonomic information about the host below subspecies level + title: host infra-specific name + keywords: + - host + - host. + slot_uri: MIXS:0000253 + range: string + host_infra_spec_rank: + description: Taxonomic rank information about the host below subspecies level, + such as variety, form, rank etc + title: host infra-specific rank + keywords: + - host + - host. + - rank + slot_uri: MIXS:0000254 + range: string + host_last_meal: + annotations: + Expected_value: + tag: Expected_value + value: content;duration + description: Content of last meal and time since feeding; can include multiple + values + title: host last meal + keywords: + - host + - host. + string_serialization: '{text};{duration}' + slot_uri: MIXS:0000870 + multivalued: true + host_length: + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter, millimeter, meter + description: The length of subject + title: host length + examples: + - value: 1 meter + keywords: + - host + - host. + - length + slot_uri: MIXS:0000256 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_life_stage: + annotations: + Expected_value: + tag: Expected_value + value: stage + description: Description of life stage of host + title: host life stage + keywords: + - host + - host. + - life + slot_uri: MIXS:0000251 + range: string + host_number: + annotations: + Expected_value: + tag: Expected_value + value: count + description: Number of symbiotic host individuals pooled at the time of collection + title: host number individual + examples: + - value: '3' + keywords: + - host + - host. + - number + string_serialization: '{float} m' + slot_uri: MIXS:0001305 + host_occupation: + description: Most frequent job performed by subject + title: host occupation + comments: + - Couldn't convert host_occupation with value veterinary to integer + - almost all host_occupation values in the NCBI biosample_set are strings, + not integers + examples: + - value: veterinary + keywords: + - host + - host. + slot_uri: MIXS:0000896 + range: string + host_of_host_coinf: + annotations: + Expected_value: + tag: Expected_value + value: species name of coinfecting organism(s) + description: The taxonomic name of any coinfecting organism observed in a symbiotic + relationship with the host of the sampled host organism. e.g. where a sample + collected from a host trematode species (A) which was collected from a host_of_host + fish (B) that was also infected with a nematode (C), the value here would be + (C) the nematode {species name} or {common name}. Multiple co-infecting species + may be added in a comma-separated list. For listing symbiotic organisms associated + with the host (A) use the term Observed host symbiont + title: observed coinfecting organisms in host of host + examples: + - value: Maritrema novaezealandense + keywords: + - host + - host. + - observed + - organism + slot_uri: MIXS:0001310 + range: string + host_of_host_disease: + annotations: + Expected_value: + tag: Expected_value + value: disease name or Disease Ontology term + description: List of diseases with which the host of the symbiotic host organism + has been diagnosed; can include multiple diagnoses. The value of the field + depends on host; for humans the terms should be chosen from the DO (Human Disease + Ontology) at https://www.disease-ontology.org, non-human host diseases are + free text + title: host of the symbiotic host disease status + examples: + - value: rabies [DOID:11260] + keywords: + - disease + - host + - host. + - status + - symbiosis + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0001319 + multivalued: true + host_of_host_env_loc: + annotations: + Expected_value: + tag: Expected_value + value: UBERON term(s), multiple values can be separated by pipes + description: For a symbiotic host organism the local anatomical environment within + its host may have causal influences. Report the anatomical entity(s) which + are in the direct environment of the symbiotic host organism being sampled + and which you believe have significant causal influences on your sample or + specimen. For example, if the symbiotic host organism being sampled is an intestinal + worm, its local environmental context will be the term for intestine from UBERON + (http://uberon.github.io/) + title: host of the symbiotic host local environmental context + examples: + - value: small intestine[uberon:0002108] + keywords: + - context + - environmental + - host + - host. + - symbiosis + string_serialization: small intestine [UBERON:0002108] + slot_uri: MIXS:0001325 + multivalued: true + host_of_host_env_med: + annotations: + Expected_value: + tag: Expected_value + value: An ontology term for a material such as a tissue type or excreted + substance + description: 'Report the environmental material(s) immediately surrounding the + symbiotic host organism at the time of sampling. This usually will be a tissue + or substance type from the host, but may be another material if the symbiont + is external to the host. We recommend using classes from the UBERON ontology, + but subclasses of ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483) + may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS + . Terms from other OBO ontologies are permissible as long as they reference + mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities + (e.g. intestines, heart).MIxS . Terms from other OBO ontologies are permissible + as long as they reference mass/volume nouns (e.g. air, water, blood) and not + discrete, countable entities (e.g. intestines, heart)' + title: host of the symbiotic host environemental medium + examples: + - value: feces[uberon:0001988] + keywords: + - environmental + - host + - host. + - symbiosis + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0001326 + host_of_host_fam_rel: + annotations: + Expected_value: + tag: Expected_value + value: relationship type;arbitrary identifier + description: Familial relationship of the host of the symbiotic host organisms + to other hosts of symbiotic host organism in the same study; can include multiple + relationships + title: host of the symbiotic host family relationship + keywords: + - family + - host + - host. + - relationship + - symbiosis + string_serialization: '{text};{text}' + slot_uri: MIXS:0001328 + multivalued: true + host_of_host_geno: + description: Observed genotype of the host of the symbiotic host organism + title: host of the symbiotic host genotype + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001331 + range: string + host_of_host_gravid: + annotations: + Expected_value: + tag: Expected_value + value: gravidity status;timestamp + description: Whether or not the host of the symbiotic host organism is gravid, + and if yes date due or date post-conception, specifying which is used + title: host of the symbiotic host gravidity + keywords: + - host + - host. + - symbiosis + string_serialization: '{boolean};{timestamp}' + slot_uri: MIXS:0001333 + host_of_host_infname: + description: Taxonomic name information of the host of the symbiotic host organism + below subspecies level + title: host of the symbiotic host infra-specific name + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001329 + range: string + host_of_host_infrank: + description: Taxonomic rank information about the host of the symbiotic host + organism below subspecies level, such as variety, form, rank etc + title: host of the symbiotic host infra-specific rank + keywords: + - host + - host. + - rank + - symbiosis + slot_uri: MIXS:0001330 + range: string + host_of_host_name: + description: Common name of the host of the symbiotic host organism + title: host of the symbiotic host common name + examples: + - value: snail + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001324 + range: string + host_of_host_pheno: + annotations: + Expected_value: + tag: Expected_value + value: phenotype of the host of the symbiotic organism; PATO + description: Phenotype of the host of the symbiotic host organism. For phenotypic + quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato + title: host of the symbiotic host phenotype + keywords: + - host + - host. + - symbiosis + string_serialization: '{term}' + slot_uri: MIXS:0001332 + host_of_host_sub_id: + description: 'A unique identifier by which each host of the symbiotic host organism + subject can be referred to, de-identified, e.g. #H14' + title: host of the symbiotic host subject id + examples: + - value: H3 + keywords: + - host + - host. + - identifier + - symbiosis + slot_uri: MIXS:0001327 + range: string + host_of_host_taxid: + annotations: + Expected_value: + tag: Expected_value + value: NCBI taxon identifier of the host of the symbiotic taxon organism + description: NCBI taxon id of the host of the symbiotic host organism + title: host of the symbiotic host taxon id + examples: + - value: '145637' + keywords: + - host + - host. + - identifier + - symbiosis + - taxon + string_serialization: '{integer}' + slot_uri: MIXS:0001306 + host_of_host_totmass: + description: Total mass of the host of the symbiotic host organism at collection, + the unit depends on the host + title: host of the symbiotic host total mass + keywords: + - host + - host. + - mass + - symbiosis + - total + slot_uri: MIXS:0001334 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_phenotype: + annotations: + Expected_value: + tag: Expected_value + value: PATO or HP + description: Phenotype of human or other host. Use terms from the phenotypic + quality ontology (pato) or the Human Phenotype Ontology (HP) + title: host phenotype + keywords: + - host + - host. + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000874 + host_pred_appr: + description: Tool or approach used for host prediction + title: host prediction approach + examples: + - value: CRISPR spacer match + in_subset: + - sequencing + keywords: + - host + - host. + - predict + slot_uri: MIXS:0000088 + range: HostPredApprEnum + host_pred_est_acc: + description: For each tool or approach used for host prediction, estimated false + discovery rates should be included, either computed de novo or from the literature + title: host prediction estimated accuracy + examples: + - value: 'CRISPR spacer match: 0 or 1 mismatches, estimated 8% FDR at the host + genus rank (Edwards et al. 2016 doi:10.1093/femsre/fuv048)' + in_subset: + - sequencing + keywords: + - host + - host. + - predict + slot_uri: MIXS:0000089 + range: string + host_pulse: + annotations: + Preferred_unit: + tag: Preferred_unit + value: beats per minute + description: Resting pulse, measured as beats per minute + title: host pulse + examples: + - value: 65 beats per minute + keywords: + - host + - host. + slot_uri: MIXS:0000333 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_sex: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Gender or physical sex of the host + title: host sex + comments: + - example of non-binary from Excel sheets does not match any of the enumerated + values + keywords: + - host + - host. + string_serialization: '[female|hermaphrodite|non-binary|male|transgender|transgender + (female to male)|transgender (male to female) + + |undeclared]' + slot_uri: MIXS:0000811 + host_shape: + description: Morphological shape of host + title: host shape + examples: + - value: round + keywords: + - host + - host. + slot_uri: MIXS:0000261 + range: string + host_spec_range: + annotations: + Expected_value: + tag: Expected_value + value: NCBI taxid + description: The range and diversity of host species that an organism is capable + of infecting, defined by NCBI taxonomy identifier + title: host specificity or range + examples: + - value: '9606' + in_subset: + - nucleic acid sequence source + keywords: + - host + - host. + - range + string_serialization: '{integer}' + slot_uri: MIXS:0000030 + multivalued: true + host_specificity: + description: 'Level of specificity of symbiont-host interaction: e.g. generalist + (symbiont able to establish associations with distantly related hosts) or species-specific' + title: host specificity + examples: + - value: species-specific + keywords: + - host + - host. + slot_uri: MIXS:0001308 + range: HostSpecificityEnum + recommended: true + host_subject_id: + description: A unique identifier by which each subject can be referred to, de-identified + title: host subject id + keywords: + - host + - host. + - identifier + slot_uri: MIXS:0000861 + range: string + host_subspecf_genlin: + annotations: + Expected_value: + tag: Expected_value + value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, + e.g. serovar, biotype, ecotype, variety, cultivar + description: Information about the genetic distinctness of the host organism + below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, + cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies + should not be recorded in this term, but in the NCBI taxonomy. Supply both + the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123 + title: host subspecific genetic lineage + examples: + - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' + keywords: + - host + - host. + - lineage + string_serialization: '{rank name}:{text}' + slot_uri: MIXS:0001318 + multivalued: true + host_substrate: + description: The growth substrate of the host + title: host substrate + examples: + - value: rock + keywords: + - host + - host. + slot_uri: MIXS:0000252 + range: string + host_symbiont: + annotations: + Expected_value: + tag: Expected_value + value: species name or common name + description: The taxonomic name of the organism(s) found living in mutualistic, + commensalistic, or parasitic symbiosis with the specific host. The sampled + symbiont can have its own symbionts. For example, parasites may have hyperparasites + (=parasites of the parasite) + title: observed host symbionts + keywords: + - host + - host. + - observed + - symbiosis + slot_uri: MIXS:0001298 + range: string + multivalued: true + host_taxid: + annotations: + Expected_value: + tag: Expected_value + value: NCBI taxon identifier + description: NCBI taxon id of the host, e.g. 9606 + title: host taxid + keywords: + - host + - host. + - taxon + slot_uri: MIXS:0000250 + host_tot_mass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Total mass of the host at collection, the unit depends on host + title: host total mass + keywords: + - host + - host. + - mass + - total + slot_uri: MIXS:0000263 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + host_wet_mass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Measurement of wet mass + title: host wet mass + examples: + - value: 1500 gram + keywords: + - host + - host. + - mass + - wet + slot_uri: MIXS:0000567 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + hrt: + description: Whether subject had hormone replacement theraphy, and if yes start + date + title: HRT + examples: + - value: '2013-03-25T12:42:31+01:00' + slot_uri: MIXS:0000969 + range: datetime + humidity: + description: Amount of water vapour in the air, at the time of sampling + title: humidity + keywords: + - humidity + slot_uri: MIXS:0000100 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + humidity_regm: + annotations: + Expected_value: + tag: Expected_value + value: humidity value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: gram per cubic meter + description: Information about treatment involving an exposure to varying degree + of humidity; information about treatment involving use of growth hormones; + should include amount of humidity administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple regimens + title: humidity regimen + examples: + - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - humidity + - regimen + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000568 + multivalued: true + hygienic_area: + annotations: + Expected_value: + tag: Expected_value + value: Expected value + description: The subdivision of areas within a food production facility according + to hygienic requirements. This field accepts terms listed under hygienic food + production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that + most accurately indicates the hygienic area your sample was taken from according + to the definitions provided + title: hygienic food production area + examples: + - value: Low Hygiene Area + keywords: + - area + - food + - production + slot_uri: MIXS:0001253 + range: string + hysterectomy: + description: Specification of whether hysterectomy was performed + title: hysterectomy + examples: + - value: 'no' + slot_uri: MIXS:0000287 + range: boolean + ihmc_medication_code: + description: Can include multiple medication codes + title: IHMC medication code + examples: + - value: '810' + keywords: + - code + slot_uri: MIXS:0000884 + range: integer + multivalued: true + indoor_space: + description: A distinguishable space within a structure, the purpose for which + discrete areas of a building is used + title: indoor space + examples: + - value: foyer + keywords: + - indoor + slot_uri: MIXS:0000763 + range: IndoorSpaceEnum + required: true + indoor_surf: + description: Type of indoor surface + title: indoor surface + examples: + - value: wall + keywords: + - indoor + - surface + slot_uri: MIXS:0000764 + range: IndoorSurfEnum + indust_eff_percent: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Percentage of industrial effluents received by wastewater treatment + plant + title: industrial effluent percent + keywords: + - percent + slot_uri: MIXS:0000662 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + inorg_particles: + annotations: + Expected_value: + tag: Expected_value + value: inorganic particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: mole per liter, milligram per liter + description: Concentration of particles such as sand, grit, metal particles, + ceramics, etc.; can include multiple particles + title: inorganic particles + keywords: + - inorganic + - particle + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000664 + multivalued: true + inside_lux: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilowatt per square metre + description: The recorded value at sampling time (power density) + title: inside lux light + keywords: + - inside + - light + slot_uri: MIXS:0000168 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + int_wall_cond: + description: The physical condition of the wall at the time of sampling; photos + or video preferred; use drawings to indicate location of damaged areas + title: interior wall condition + examples: + - value: damaged + keywords: + - condition + - interior + - wall + slot_uri: MIXS:0000813 + range: DamagedEnum + intended_consumer: + annotations: + Expected_value: + tag: Expected_value + value: FOODON_03510136 or NCBI taxid + description: Food consumer type, human or animal, for which the food product + is produced and marketed. This field accepts terms listed under food consumer + group (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid + title: intended consumer + examples: + - value: 9606 o rsenior as food consumer [FOODON:03510254] + keywords: + - consumer + string_serialization: '{integer}|{termLabel} [{termID}]' + slot_uri: MIXS:0001144 + multivalued: true + isol_growth_condt: + description: Publication reference in the form of pubmed ID (pmid), digital object + identifier (doi) or url for isolation and growth condition specifications of + the organism/material + title: isolation and growth condition + examples: + - value: doi:10.1016/j.syapm.2018.01.009 + in_subset: + - nucleic acid sequence source + keywords: + - condition + - growth + - isolation + slot_uri: MIXS:0000003 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + iw_bt_date_well: + description: Injection water breakthrough date per well following a secondary + and/or tertiary recovery + title: injection water breakthrough date of specific well + examples: + - value: '2013-03-25T12:42:31+01:00' + keywords: + - date + - water + slot_uri: MIXS:0001010 + range: datetime + iwf: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: Proportion of the produced fluids derived from injected water at + the time of sampling. (e.g. 87%) + title: injection water fraction + comments: + - pattern was "[0-9]*\\.?[0-9]+ ?%" + - percent or float? + examples: + - value: '0.79' + keywords: + - fraction + - water + slot_uri: MIXS:0000455 + range: float + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + kidney_disord: + description: History of kidney disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + kidney disease (https://disease-ontology.org/?id=DOID:557) + title: urine/kidney disorder + keywords: + - disorder + slot_uri: MIXS:0000277 + range: string + multivalued: true + last_clean: + description: The last time the floor was cleaned (swept, mopped, vacuumed) + title: last time swept/mopped/vacuumed + examples: + - value: '2013-03-25T12:42:31+01:00' + keywords: + - time + slot_uri: MIXS:0000814 + range: datetime + lat_lon: + description: The geographical origin of the sample as defined by latitude and + longitude. The values should be reported in decimal degrees, limited to 8 decimal + points, and in WGS84 system + title: geographic location (latitude and longitude) + examples: + - value: 50.586825 6.408977 + in_subset: + - environment + keywords: + - geographic + - location + slot_uri: MIXS:0000009 + required: true + pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$ + structured_pattern: + syntax: ^{lat} {lon}$ + interpolated: true + partial_match: true + lib_layout: + description: Specify whether to expect single, paired, or other configuration + of reads + title: library layout + examples: + - value: paired + in_subset: + - sequencing + keywords: + - library + slot_uri: MIXS:0000041 + range: LibLayoutEnum + lib_reads_seqd: + description: Total number of clones sequenced from the library + title: library reads sequenced + examples: + - value: '20' + in_subset: + - sequencing + keywords: + - library + slot_uri: MIXS:0000040 + range: integer + lib_screen: + annotations: + Expected_value: + tag: Expected_value + value: screening strategy name + description: Specific enrichment or screening methods applied before and/or after + creating libraries + title: library screening strategy + examples: + - value: enriched, screened, normalized + in_subset: + - sequencing + keywords: + - library + slot_uri: MIXS:0000043 + range: string + lib_size: + description: Total number of clones in the library prepared for the project + title: library size + examples: + - value: '50' + in_subset: + - sequencing + keywords: + - library + - size + slot_uri: MIXS:0000039 + range: integer + lib_vector: + annotations: + Expected_value: + tag: Expected_value + value: vector + description: Cloning vector type(s) used in construction of libraries + title: library vector + examples: + - value: Bacteriophage P1 + in_subset: + - sequencing + keywords: + - library + slot_uri: MIXS:0000042 + range: string + library_prep_kit: + annotations: + Expected_value: + tag: Expected_value + value: name of library preparation kit + description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.), + tailored for specific sequencing workflows, which allow the simplified preparation + of sequencing-ready libraries for small genomes, amplicons, and plasmids + title: library preparation kit + keywords: + - kit + - library + - preparation + slot_uri: MIXS:0001145 + range: string + light_intensity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: lux + description: Measurement of light intensity + title: light intensity + examples: + - value: 0.3 lux + keywords: + - intensity + - light + slot_uri: MIXS:0000706 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + light_regm: + annotations: + Expected_value: + tag: Expected_value + value: exposure type;light intensity;light quality + Preferred_unit: + tag: Preferred_unit + value: lux; micrometer, nanometer, angstrom + description: Information about treatment(s) involving exposure to light, including + both light intensity and quality + title: light regimen + examples: + - value: incandescant light;10 lux;450 nanometer + keywords: + - light + - regimen + string_serialization: '{text};{float} {unit};{float} {unit}' + slot_uri: MIXS:0000569 + light_type: + description: Application of light to achieve some practical or aesthetic effect. + Lighting includes the use of both artificial light sources such as lamps and + light fixtures, as well as natural illumination by capturing daylight. Can + also include absence of light + title: light type + examples: + - value: desk lamp + keywords: + - light + - type + slot_uri: MIXS:0000769 + range: LightTypeEnum + required: true + multivalued: true + link_addit_analys: + description: Link to additional analysis results performed on the sample + title: links to additional analysis + keywords: + - link + slot_uri: MIXS:0000340 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + link_class_info: + annotations: + Expected_value: + tag: Expected_value + value: PMID,DOI or url + description: Link to digitized soil maps or other soil classification information + title: link to classification information + keywords: + - classification + - information + - link + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000329 + link_climate_info: + description: Link to climate resource + title: link to climate information + keywords: + - information + - link + slot_uri: MIXS:0000328 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + lithology: + description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). + If "other" is specified, please propose entry in "additional info" field' + title: lithology + examples: + - value: Volcanic + keywords: + - lithology + slot_uri: MIXS:0000990 + range: LithologyEnum + recommended: true + liver_disord: + description: History of liver disorders; can include multiple disorders. The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + liver disease (https://disease-ontology.org/?id=DOID:409) + title: liver disorder + keywords: + - disorder + slot_uri: MIXS:0000282 + range: string + multivalued: true + local_class: + annotations: + Expected_value: + tag: Expected_value + value: local classification name + description: Soil classification based on local soil classification system + title: soil_taxonomic/local classification + keywords: + - classification + slot_uri: MIXS:0000330 + range: string + local_class_meth: + description: Reference or method used in determining the local soil classification + title: soil_taxonomic/local classification method + keywords: + - classification + - method + slot_uri: MIXS:0000331 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + lot_number: + annotations: + Expected_value: + tag: Expected_value + value: lot number, item + description: 'A distinctive alpha-numeric identification code assigned by the + manufacturer or distributor to a specific quantity of manufactured material + or product within a batch. Synonym: Batch Number. The submitter should provide + lot number of the item followed by the item name for which the lot number was + provided' + title: lot number + examples: + - value: 1239ABC01A, split Cornish hens + keywords: + - number + string_serialization: '{integer}, {text}' + slot_uri: MIXS:0001147 + multivalued: true + mag_cov_software: + description: Tool(s) used to determine the genome coverage if coverage is used + as a binning parameter in the extraction of genomes from metagenomic datasets + title: MAG coverage software + examples: + - value: bbmap + in_subset: + - sequencing + keywords: + - software + slot_uri: MIXS:0000080 + range: MagCovSoftwareEnum + magnesium: + annotations: + Preferred_unit: + tag: Preferred_unit + value: mole per liter, milligram per liter, parts per million, micromole + per kilogram + description: Concentration of magnesium in the sample + title: magnesium + examples: + - value: 52.8 micromole per kilogram + slot_uri: MIXS:0000431 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + maternal_health_stat: + description: Specification of the maternal health status + title: amniotic fluid/maternal health status + keywords: + - status + slot_uri: MIXS:0000273 + range: string + max_occup: + description: The maximum amount of people allowed in the indoor environment + title: maximum occupancy + keywords: + - maximum + slot_uri: MIXS:0000229 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + mean_frict_vel: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter per second + description: Measurement of mean friction velocity + title: mean friction velocity + examples: + - value: 0.5 meter per second + keywords: + - mean + - velocity + slot_uri: MIXS:0000498 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + mean_peak_frict_vel: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter per second + description: Measurement of mean peak friction velocity + title: mean peak friction velocity + examples: + - value: 1 meter per second + keywords: + - mean + - peak + - velocity + slot_uri: MIXS:0000502 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + mech_struc: + description: 'mechanical structure: a moving structure' + title: mechanical structure + examples: + - value: elevator + slot_uri: MIXS:0000815 + range: MechStrucEnum + mechanical_damage: + annotations: + Expected_value: + tag: Expected_value + value: damage type;body site + description: Information about any mechanical damage exerted on the plant; can + include multiple damages and sites + title: mechanical damage + examples: + - value: pruning;bark + string_serialization: '{text};{text}' + slot_uri: MIXS:0001052 + multivalued: true + medic_hist_perform: + description: Whether full medical history was collected + title: medical history performed + examples: + - value: '1' + keywords: + - history + slot_uri: MIXS:0000897 + range: boolean + menarche: + description: Date of most recent menstruation + title: menarche + examples: + - value: '2013-03-25T12:42:31+01:00' + slot_uri: MIXS:0000965 + range: datetime + menopause: + description: Date of onset of menopause + title: menopause + examples: + - value: '2013-03-25T12:42:31+01:00' + slot_uri: MIXS:0000968 + range: datetime + methane: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, parts per billion, parts per million + description: Methane (gas) amount or concentration at the time of sampling + title: methane + slot_uri: MIXS:0000101 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + micro_biomass_meth: + description: Reference or method used in determining microbial biomass + title: microbial biomass method + comments: + - slot name/scn was microbial_biomass_meth + examples: + - value: http://dx.doi.org/10.1016/j.soilbio.2005.01.021 + keywords: + - biomass + - method + - microbial + slot_uri: MIXS:0000339 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + microb_cult_med: + description: A culture medium used to select for, grow, and maintain prokaryotic + microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar) + forms. This field accepts terms listed under microbiological culture medium + (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is + not listed please use text to describe the culture medium + title: microbiological culture medium + examples: + - value: brain heart infusion agar [MICRO:0000566] + keywords: + - culture + - microbiological + slot_uri: MIXS:0001216 + range: string + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + microb_start: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03544453 + description: Any type of microorganisms used in food production. This field + accepts terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453) + title: microbial starter + examples: + - value: starter cultures [FOODON:03544454] + keywords: + - microbial + string_serialization: '{term label} [{termID}]|{text}' + slot_uri: MIXS:0001217 + microb_start_count: + annotations: + Expected_value: + tag: Expected_value + value: organism name; measurement value; enumeration + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight + description: 'Total cell count of starter culture per gram, volume or area of + sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn, + etc.) should also be provided. (example : total prokaryotes; 3.5e7 cells per + ml; qPCR)' + title: microbial starter organism count + examples: + - value: total prokaryotes;3.5e9 colony forming units per milliliter;spread + plate + keywords: + - count + - microbial + - organism + string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|spread plate|other]' + slot_uri: MIXS:0001218 + microb_start_inoc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram or gram + description: The amount of starter culture used to inoculate a new batch + title: microbial starter inoculation + examples: + - value: 100 milligrams + keywords: + - microbial + slot_uri: MIXS:0001219 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + microb_start_prep: + description: Information about the protocol or method used to prepare the starter + inoculum + title: microbial starter preparation + examples: + - value: liquid starter culture, propagated 3 cycles in milk prior to inoculation + keywords: + - microbial + - preparation + slot_uri: MIXS:0001220 + range: string + microb_start_source: + description: The source from which the microbial starter culture was sourced. If + commercially supplied, list supplier + title: microbial starter source + examples: + - value: backslopped, GetCulture + keywords: + - microbial + - source + slot_uri: MIXS:0001221 + range: string + microb_start_taxID: + description: Please include Genus species and strain ID, if known of microorganisms + used in food production. For complex communities, pipes can be used to separate + two or more microbes + title: microbial starter NCBI taxonomy ID + examples: + - value: Lactobacillus rhamnosus [NCIT:C123495] + keywords: + - identifier + - microbial + - ncbi + - taxon + slot_uri: MIXS:0001222 + range: string + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + microbial_biomass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: ton, kilogram, gram per kilogram soil + description: The part of the organic matter in the soil that constitutes living + microorganisms smaller than 5-10 micrometer. If you keep this, you would need + to have correction factors used for conversion to the final units + title: microbial biomass + keywords: + - biomass + - microbial + slot_uri: MIXS:0000650 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + mid: + description: Molecular barcodes, called Multiplex Identifiers (MIDs), that are + used to specifically tag unique samples in a sequencing run. Sequence should + be reported in uppercase letters + title: multiplex identifiers + examples: + - value: GTGAATAT + in_subset: + - sequencing + keywords: + - identifier + slot_uri: MIXS:0000047 + range: string + pattern: ^[ACGTRKSYMWBHDVN]+$ + structured_pattern: + syntax: ^{ambiguous_nucleotides}$ + interpolated: true + partial_match: true + mineral_nutr_regm: + annotations: + Expected_value: + tag: Expected_value + value: mineral nutrient name;mineral nutrient amount;treatment interval and + duration + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving the use of mineral supplements; + should include the name of mineral nutrient, amount administered, treatment + regimen including how many times the treatment was repeated, how long each + treatment lasted, and the start and end time of the entire treatment; can include + multiple mineral nutrient regimens + title: mineral nutrient regimen + examples: + - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - mineral + - nutrient + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000570 + multivalued: true + misc_param: + annotations: + Expected_value: + tag: Expected_value + value: parameter name;measurement value + description: Any other measurement performed or parameter collected, that is + not listed here + title: miscellaneous parameter + examples: + - value: Bicarbonate ion concentration;2075 micromole per kilogram + keywords: + - parameter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000752 + multivalued: true + mode_transmission: + description: The process through which the symbiotic host organism entered the + host from which it was sampled + title: mode of transmission + examples: + - value: horizontal:castrator + slot_uri: MIXS:0001312 + range: ModeTransmissionEnum + recommended: true + n_alkanes: + annotations: + Expected_value: + tag: Expected_value + value: n-alkane name;measurement value + description: Concentration of n-alkanes; can include multiple n-alkanes + title: n-alkanes + examples: + - value: n-hexadecane;100 milligram per liter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000503 + multivalued: true + neg_cont_type: + annotations: + Expected_value: + tag: Expected_value + value: enumeration or text + description: The substance or equipment used as a negative control in an investigation + title: negative control type + in_subset: + - investigation + keywords: + - type + slot_uri: MIXS:0001321 + range: NegContTypeEnum + recommended: true + nitrate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of nitrate in the sample + title: nitrate + examples: + - value: 65 micromole per liter + keywords: + - nitrate + slot_uri: MIXS:0000425 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + nitrite: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of nitrite in the sample + title: nitrite + examples: + - value: 0.5 micromole per liter + keywords: + - nitrite + slot_uri: MIXS:0000426 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + nitro: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of nitrogen (total) + title: nitrogen + examples: + - value: 4.2 micromole per liter + keywords: + - nitrogen + slot_uri: MIXS:0000504 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + non_min_nutr_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving the exposure of plant to non-mineral + nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral + nutrient, amount administered, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple non-mineral nutrient regimens + title: non-mineral nutrient regimen + examples: + - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ + keywords: + - non-mineral + - nutrient + - regimen + slot_uri: MIXS:0000571 + range: string + multivalued: true + nose_mouth_teeth_throat_disord: + description: History of nose/mouth/teeth/throat disorders; can include multiple + disorders. The terms should be chosen from the DO (Human Disease Ontology) + at http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825), + mouth disease (https://disease-ontology.org/?id=DOID:403), tooth disease (https://disease-ontology.org/?id=DOID:1091), + or upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974) + title: nose/mouth/teeth/throat disorder + keywords: + - disorder + slot_uri: MIXS:0000283 + range: string + multivalued: true + nose_throat_disord: + description: History of nose-throat disorders; can include multiple disorders, The + terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + lung disease (https://disease-ontology.org/?id=DOID:850), upper respiratory + tract disease (https://disease-ontology.org/?id=DOID:974) + title: nose throat disorder + keywords: + - disorder + slot_uri: MIXS:0000270 + range: string + multivalued: true + nucl_acid_amp: + description: A link to a literature reference, electronic resource or a standard + operating procedure (SOP), that describes the enzymatic amplification (PCR, + TMA, NASBA) of specific nucleic acids + title: nucleic acid amplification + examples: + - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ + in_subset: + - sequencing + slot_uri: MIXS:0000038 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + nucl_acid_ext: + description: A link to a literature reference, electronic resource or a standard + operating procedure (SOP), that describes the material separation to recover + the nucleic acid fraction from a sample + title: nucleic acid extraction + examples: + - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf + in_subset: + - sequencing + slot_uri: MIXS:0000037 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + nucl_acid_ext_kit: + annotations: + Expected_value: + tag: Expected_value + value: The name of an extraction kit + description: The name of the extraction kit used to recover the nucleic acid + fraction of an input material is performed + title: nucleic acid extraction kit + examples: + - value: Qiagen PowerSoil Kit + keywords: + - kit + slot_uri: MIXS:0001223 + range: string + multivalued: true + num_replicons: + annotations: + Expected_value: + tag: Expected_value + value: 'for eukaryotes and bacteria: chromosomes (haploid count); for viruses: + segments' + description: Reports the number of replicons in a nuclear genome of eukaryotes, + in the genome of a bacterium or archaea or the number of segments in a segmented + virus. Always applied to the haploid chromosome count of a eukaryote + title: number of replicons + examples: + - value: '2' + in_subset: + - nucleic acid sequence source + keywords: + - number + string_serialization: '{integer}' + slot_uri: MIXS:0000022 + range: integer + num_samp_collect: + description: The number of samples collected during the current sampling event + title: number of samples collected + examples: + - value: 116 samples + keywords: + - number + - sample + slot_uri: MIXS:0001224 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + number_contig: + description: Total number of contigs in the cleaned/submitted assembly that makes + up a given genome, SAG, MAG, or UViG + title: number of contigs + examples: + - value: '40' + in_subset: + - sequencing + keywords: + - number + slot_uri: MIXS:0000060 + range: integer + number_pets: + description: The number of pets residing in the sampled space + title: number of pets + keywords: + - number + slot_uri: MIXS:0000231 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + number_plants: + description: The number of plant(s) in the sampling space + title: number of houseplants + keywords: + - number + slot_uri: MIXS:0000230 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + number_resident: + description: The number of individuals currently occupying in the sampling location + title: number of residents + keywords: + - number + slot_uri: MIXS:0000232 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + occup_density_samp: + description: Average number of occupants at time of sampling per square footage + title: occupant density at sampling + examples: + - value: '0.1' + keywords: + - density + slot_uri: MIXS:0000217 + range: float + required: true + occup_document: + description: The type of documentation of occupancy + title: occupancy documentation + examples: + - value: estimate + keywords: + - documentation + slot_uri: MIXS:0000816 + range: OccupDocumentEnum + occup_samp: + description: Number of occupants present at time of sample within the given space + title: occupancy at sampling + examples: + - value: '10' + slot_uri: MIXS:0000772 + range: float + required: true + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + org_carb: + description: Concentration of organic carbon + title: organic carbon + examples: + - value: 1.5 microgram per liter + keywords: + - carbon + - organic + slot_uri: MIXS:0000508 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + org_count_qpcr_info: + annotations: + Expected_value: + tag: Expected_value + value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial + denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes; total cycles + Preferred_unit: + tag: Preferred_unit + value: number of cells per gram (or ml or cm^2) + description: 'If qpcr was used for the cell count, the target gene name, the + primer sequence and the cycling conditions should also be provided. (Example: + 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; + denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for + 1 min; final elongation:72C_5min; 30 cycles)' + title: organism count qPCR information + keywords: + - count + - information + - organism + string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes; total cycles' + slot_uri: MIXS:0000099 + org_matter: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter + description: Concentration of organic matter + title: organic matter + examples: + - value: 1.75 milligram per cubic meter + keywords: + - organic + slot_uri: MIXS:0000204 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + org_nitro: + description: Concentration of organic nitrogen + title: organic nitrogen + examples: + - value: 4 micromole per liter + keywords: + - nitrogen + - organic + slot_uri: MIXS:0000205 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + org_particles: + annotations: + Expected_value: + tag: Expected_value + value: particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram per liter + description: Concentration of particles such as faeces, hairs, food, vomit, paper + fibers, plant material, humus, etc + title: organic particles + keywords: + - organic + - particle + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000665 + multivalued: true + organism_count: + annotations: + Expected_value: + tag: Expected_value + value: organism name;measurement value;enumeration + description: 'Total cell count of any organism (or group of organisms) per gram, + volume or area of sample, should include name of organism followed by count. + The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should + also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)' + title: organism count + keywords: + - count + - organism + string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]' + slot_uri: MIXS:0000103 + multivalued: true + otu_class_appr: + annotations: + Expected_value: + tag: Expected_value + value: cutoffs and method used + description: Cutoffs and approach used when clustering species-level OTUs. + Note that results from standard 95% ANI / 85% AF clustering should be provided + alongside OTUS defined from another set of thresholds, even if the latter are + the ones primarily used during the analysis + title: OTU classification approach + examples: + - value: 95% ANI;85% AF; greedy incremental clustering + in_subset: + - sequencing + keywords: + - classification + - otu + string_serialization: '{ANI cutoff};{AF cutoff};{clustering method}' + slot_uri: MIXS:0000085 + otu_db: + annotations: + Expected_value: + tag: Expected_value + value: database and version + description: Reference database (i.e. sequences not generated as part of the + current study) used to cluster new genomes in "species-level" OTUs, if any + title: OTU database + examples: + - value: NCBI Viral RefSeq;83 + in_subset: + - sequencing + keywords: + - database + - otu + string_serialization: '{database};{version}' + slot_uri: MIXS:0000087 + otu_seq_comp_appr: + annotations: + Expected_value: + tag: Expected_value + value: software name, version and relevant parameters + description: Tool and thresholds used to compare sequences when computing "species-level" + OTUs + title: OTU sequence comparison approach + examples: + - value: 'blastn;2.6.0+;e-value cutoff: 0.001' + in_subset: + - sequencing + keywords: + - otu + string_serialization: '{software};{version};{parameters}' + slot_uri: MIXS:0000086 + owc_tvdss: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Depth of the original oil water contact (OWC) zone (average) (m + TVDSS) + title: oil water contact depth + keywords: + - depth + - oil + - water + slot_uri: MIXS:0000405 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + oxy_stat_samp: + description: Oxygenation status of sample + title: oxygenation status of sample + examples: + - value: aerobic + keywords: + - oxygen + - sample + - status + slot_uri: MIXS:0000753 + range: OxyStatSampEnum + oxygen: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Oxygen (gas) amount or concentration at the time of sampling + title: oxygen + examples: + - value: 600 parts per million + keywords: + - oxygen + slot_uri: MIXS:0000104 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + part_org_carb: + description: Concentration of particulate organic carbon + title: particulate organic carbon + examples: + - value: 1.92 micromole per liter + keywords: + - carbon + - organic + - particle + - particulate + slot_uri: MIXS:0000515 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + part_org_nitro: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Concentration of particulate organic nitrogen + title: particulate organic nitrogen + examples: + - value: 0.3 micromole per liter + keywords: + - nitrogen + - organic + - particle + - particulate + slot_uri: MIXS:0000719 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + part_plant_animal: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03420116 + description: The anatomical part of the organism being involved in food production + or consumption; e.g., a carrot is the root of the plant (root vegetable). This + field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116) + title: part of plant or animal + examples: + - value: chuck [FOODON:03530021] + keywords: + - animal + - plant + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001149 + multivalued: true + particle_class: + annotations: + Expected_value: + tag: Expected_value + value: particle name;measurement value + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Particles are classified, based on their size, into six general + categories:clay, silt, sand, gravel, cobbles, and boulders; should include + amount of particle preceded by the name of the particle type; can include multiple + values + title: particle classification + keywords: + - classification + - particle + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000206 + multivalued: true + pathogenicity: + annotations: + Expected_value: + tag: Expected_value + value: names of organisms that the entity is pathogenic to + description: To what is the entity pathogenic + title: known pathogenicity + examples: + - value: human, animal, plant, fungi, bacteria + in_subset: + - nucleic acid sequence source + slot_uri: MIXS:0000027 + range: string + pcr_cond: + annotations: + Expected_value: + tag: Expected_value + value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes;total cycles + description: Description of reaction conditions and components of polymerase + chain reaction performed during library preparation. + title: pcr conditions + examples: + - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 + - value: initial denaturation:94degC_1.5min + in_subset: + - sequencing + keywords: + - condition + - pcr + string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final + elongation:degrees_minutes;total cycles + slot_uri: MIXS:0000049 + pcr_primers: + annotations: + Expected_value: + tag: Expected_value + value: 'FWD: forward primer sequence;REV:reverse primer sequence' + description: PCR primers that were used to amplify the sequence of the targeted + gene, locus or subfragment. This field should contain all the primers used + for a single PCR reaction if multiple forward or reverse primers are present + in a single PCR reaction. The primer sequence should be reported in uppercase + letters + title: pcr primers + examples: + - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT + in_subset: + - sequencing + keywords: + - pcr + string_serialization: FWD:{dna};REV:{dna} + slot_uri: MIXS:0000046 + permeability: + annotations: + Expected_value: + tag: Expected_value + value: measurement value range + Preferred_unit: + tag: Preferred_unit + value: mD + description: 'Measure of the ability of a hydrocarbon resource to allow fluids + to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))' + title: permeability + string_serialization: '{integer} - {integer} {unit}' + slot_uri: MIXS:0000404 + perturbation: + annotations: + Expected_value: + tag: Expected_value + value: perturbation type name;perturbation interval and duration + description: Type of perturbation, e.g. chemical administration, physical disturbance, + etc., coupled with perturbation regimen including how many times the perturbation + was repeated, how long each perturbation lasted, and the start and end time + of the entire perturbation period; can include multiple perturbation types + title: perturbation + examples: + - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M + keywords: + - perturbation + string_serialization: '{text};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000754 + multivalued: true + pesticide_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter + description: Information about treatment involving use of insecticides; should + include the name of pesticide, amount administered, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple pesticide + regimens + title: pesticide regimen + examples: + - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + slot_uri: MIXS:0000573 + range: string + multivalued: true + pet_farm_animal: + annotations: + Expected_value: + tag: Expected_value + value: presence status;type of animal or pet + description: Specification of presence of pets or farm animals in the environment + of subject, if yes the animals should be specified; can include multiple animals + present + title: presence of pets or farm animals + examples: + - value: yes; 5 cats + keywords: + - animal + - farm + - presence + string_serialization: '{boolean};{text}' + slot_uri: MIXS:0000267 + multivalued: true + petroleum_hydrocarb: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of petroleum hydrocarbon + title: petroleum hydrocarbon + examples: + - value: 0.05 micromole per liter + keywords: + - hydrocarbon + - petroleum + slot_uri: MIXS:0000516 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ph: + description: Ph measurement of the sample, or liquid portion of sample, or aqueous + phase of the fluid + title: pH + examples: + - value: '7.2' + keywords: + - ph + slot_uri: MIXS:0001001 + range: float + ph_meth: + description: Reference or method used in determining pH + title: pH method + examples: + - value: https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf + keywords: + - method + - ph + slot_uri: MIXS:0001106 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + ph_regm: + description: Information about treatment involving exposure of plants to varying + levels of ph of the growth media, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include multiple regimen + title: pH regimen + examples: + - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M + keywords: + - ph + - regimen + slot_uri: MIXS:0001056 + range: string + multivalued: true + phaeopigments: + annotations: + Expected_value: + tag: Expected_value + value: phaeopigment name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter + description: Concentration of phaeopigments; can include multiple phaeopigments + title: phaeopigments + examples: + - value: 2.5 milligram per cubic meter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000180 + multivalued: true + phosphate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of phosphate + title: phosphate + examples: + - value: 0.7 micromole per liter + keywords: + - phosphate + slot_uri: MIXS:0000505 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + phosplipid_fatt_acid: + annotations: + Expected_value: + tag: Expected_value + value: phospholipid fatty acid name;measurement value + description: Concentration of phospholipid fatty acids; can include multiple + values + title: phospholipid fatty acid + examples: + - value: 2.98 milligram per liter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000181 + multivalued: true + photon_flux: + annotations: + Preferred_unit: + tag: Preferred_unit + value: number of photons per second per unit area + description: Measurement of photon flux + title: photon flux + examples: + - value: 3.926 micromole photons per second per square meter + slot_uri: MIXS:0000725 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + photosynt_activ: + annotations: + Preferred_unit: + tag: Preferred_unit + value: mol m-2 s-1 + description: Measurement of photosythetic activity (i.e. leaf gas exchange / + chlorophyll fluorescence emissions / reflectance / transpiration) Please also + include the term method term detailing the method of activity measurement + title: photosynthetic activity + examples: + - value: 0.1 mol CO2 m-2 s-1 + description: added a magnitude to the example from the XLSX file, " mol CO2 + m-2 s-1" + slot_uri: MIXS:0001296 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + photosynt_activ_meth: + description: Reference or method used in measurement of photosythetic activity + title: photosynthetic activity method + keywords: + - method + slot_uri: MIXS:0001336 + range: string + recommended: true + multivalued: true + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + plant_growth_med: + annotations: + Expected_value: + tag: Expected_value + value: EO or enumeration + description: Specification of the media for growing the plants or tissue cultured + samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in + vitro liquid culture medium. Recommended value is a specific value from EO:plant + growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) + or other controlled vocabulary + title: plant growth medium + keywords: + - growth + - plant + string_serialization: '{termLabel} [{termID}] or [husk|other artificial liquid + medium|other artificial solid medium|peat moss|perlite|pumice|sand|soil|vermiculite|water]' + slot_uri: MIXS:0001057 + plant_part_maturity: + annotations: + Expected_value: + tag: Expected_value + value: FOODON:03530050 + description: A description of the stage of development of a plant or plant part + based on maturity or ripeness. This field accepts terms listed under degree + of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050) + title: degree of plant part maturity + examples: + - value: ripe or mature [FOODON:03530052] + keywords: + - degree + - plant + string_serialization: '{term label}{term ID}' + slot_uri: MIXS:0001120 + plant_product: + annotations: + Expected_value: + tag: Expected_value + value: product name + description: Substance produced by the plant, where the sample was obtained from + title: plant product + examples: + - value: xylem sap [PO:0025539] + keywords: + - plant + - product + slot_uri: MIXS:0001058 + range: string + plant_reprod_crop: + description: Plant reproductive part used in the field during planting to start + the crop + title: plant reproductive part + examples: + - value: seedling + keywords: + - plant + slot_uri: MIXS:0001150 + range: PlantReprodCropEnum + multivalued: true + plant_sex: + description: Sex of the reproductive parts on the whole plant, e.g. pistillate, + staminate, monoecieous, hermaphrodite + title: plant sex + examples: + - value: Hermaphroditic + keywords: + - plant + slot_uri: MIXS:0001059 + range: PlantSexEnum + plant_struc: + description: Name of plant structure the sample was obtained from; for Plant + Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, + e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the + sex of it can be recorded here + title: plant structure + examples: + - value: epidermis [PO:0005679] + keywords: + - plant + slot_uri: MIXS:0001060 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + plant_water_method: + description: Description of the equipment or method used to distribute water + to crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). + Multiple terms can be separated by pipes + title: plant water delivery method + examples: + - value: drip irrigation process [AGRO:00000056] + keywords: + - delivery + - method + - plant + - water + slot_uri: MIXS:0001111 + range: string + recommended: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + ploidy: + description: The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, + triploid, tetraploid). It has implications for the downstream study of duplicated + gene and regions of the genomes (and perhaps for difficulties in assembly). + For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic + Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer + to http://purl.bioontology.org/ontology/PATO + title: ploidy + examples: + - value: allopolyploidy [PATO:0001379] + in_subset: + - nucleic acid sequence source + slot_uri: MIXS:0000021 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + pollutants: + annotations: + Expected_value: + tag: Expected_value + value: pollutant name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, mole per liter, milligram per liter, microgram per cubic meter + description: Pollutant types and, amount or concentrations measured at the time + of sampling; can report multiple pollutants by entering numeric values preceded + by name of pollutant + title: pollutants + examples: + - value: lead;0.15 microgram per cubic meter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000107 + multivalued: true + pool_dna_extracts: + annotations: + Expected_value: + tag: Expected_value + value: pooling status;number of pooled extracts + Preferred_unit: + tag: Preferred_unit + value: gram, milliliter, microliter + description: Indicate whether multiple DNA extractions were mixed. If the answer + yes, the number of extracts that were pooled should be given + title: pooling of DNA extracts (if done) + examples: + - value: yes, 5 + keywords: + - dna + - pooling + slot_uri: MIXS:0000325 + porosity: + annotations: + Expected_value: + tag: Expected_value + value: measurement value or range + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Porosity of deposited sediment is volume of voids divided by the + total volume of sample + title: porosity + keywords: + - porosity + string_serialization: '{float} - {float} {unit}' + slot_uri: MIXS:0000211 + pos_cont_type: + description: The substance, mixture, product, or apparatus used to verify that + a process which is part of an investigation delivers a true positive + title: positive control type + in_subset: + - investigation + keywords: + - type + string_serialization: '{term} or {text}' + slot_uri: MIXS:0001322 + recommended: true + potassium: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of potassium in the sample + title: potassium + examples: + - value: 463 milligram per liter + slot_uri: MIXS:0000430 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + pour_point: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: 'Temperature at which a liquid becomes semi solid and loses its + flow characteristics. In crude oil a high pour point is generally associated + with a high paraffin content, typically found in crude deriving from a larger + proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)' + title: pour point + slot_uri: MIXS:0000127 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + pre_treatment: + annotations: + Expected_value: + tag: Expected_value + value: pre-treatment type + description: The process of pre-treatment removes materials that can be easily + collected from the raw wastewater + title: pre-treatment + slot_uri: MIXS:0000348 + range: string + pred_genome_struc: + description: Expected structure of the viral genome + title: predicted genome structure + examples: + - value: non-segmented + in_subset: + - sequencing + keywords: + - predict + slot_uri: MIXS:0000083 + range: PredGenomeStrucEnum + pred_genome_type: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Type of genome predicted for the UViG + title: predicted genome type + examples: + - value: dsDNA + in_subset: + - sequencing + keywords: + - predict + - type + string_serialization: '[DNA|dsDNA|ssDNA|RNA|dsRNA|ssRNA|ssRNA (+)|ssRNA (-)|mixed|uncharacterized]' + slot_uri: MIXS:0000082 + pregnancy: + description: Date due of pregnancy + title: pregnancy + examples: + - value: '2013-03-25T12:42:31+01:00' + slot_uri: MIXS:0000966 + range: datetime + pres_animal_insect: + annotations: + Expected_value: + tag: Expected_value + value: enumeration;count + description: The type and number of animals or insects present in the sampling + space + title: presence of pets, animals, or insects + examples: + - value: cat;5 + keywords: + - animal + - presence + string_serialization: '[cat|dog|rodent|snake|other];{integer}' + slot_uri: MIXS:0000819 + pressure: + annotations: + Preferred_unit: + tag: Preferred_unit + value: atmosphere + description: Pressure to which the sample is subject to, in atmospheres + title: pressure + examples: + - value: 50 atmosphere + keywords: + - pressure + slot_uri: MIXS:0000412 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + prev_land_use_meth: + description: Reference or method used in determining previous land use and dates + title: history/previous land use method + keywords: + - history + - land + - method + - use + slot_uri: MIXS:0000316 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + previous_land_use: + annotations: + Expected_value: + tag: Expected_value + value: land use name;date + description: Previous land use and dates + title: history/previous land use + examples: + - value: fallow; 2018-05-11:T14:30Z + keywords: + - history + - land + - use + string_serialization: '{text};{timestamp}' + slot_uri: MIXS:0000315 + primary_prod: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per cubic meter per day, gram per square meter per day + description: Measurement of primary production, generally measured as isotope + uptake + title: primary production + examples: + - value: 100 milligram per cubic meter per day + keywords: + - primary + - production + slot_uri: MIXS:0000728 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + primary_treatment: + annotations: + Expected_value: + tag: Expected_value + value: primary treatment type + description: The process to produce both a generally homogeneous liquid capable + of being treated biologically and a sludge that can be separately treated or + processed + title: primary treatment + keywords: + - primary + - treatment + slot_uri: MIXS:0000349 + range: string + prod_label_claims: + description: Labeling claims containing descriptors such as wild caught, free-range, + organic, free-range, industrial, hormone-free, antibiotic free, cage free. + Can include more than one term, separated by ";" + title: production labeling claims + examples: + - value: free range + keywords: + - production + slot_uri: MIXS:prod_label_claims + range: string + multivalued: true + prod_rate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per day + description: Oil and/or gas production rates per well (e.g. 524 m3 / day) + title: production rate + keywords: + - production + - rate + slot_uri: MIXS:0000452 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + prod_start_date: + description: Date of field's first production + title: production start date + examples: + - value: '2013-03-25T12:42:31+01:00' + keywords: + - date + - production + - start + slot_uri: MIXS:0001008 + range: datetime + recommended: true + profile_position: + description: Cross-sectional position in the hillslope where sample was collected.sample + area position in relation to surrounding areas + title: profile position + examples: + - value: summit + slot_uri: MIXS:0001084 + range: ProfilePositionEnum + project_name: + description: Name of the project within which the sequencing was organized + title: project name + examples: + - value: Forest soil metagenome + in_subset: + - investigation + keywords: + - project + slot_uri: MIXS:0000092 + range: string + required: true + propagation: + annotations: + Expected_value: + tag: Expected_value + value: 'for virus: lytic, lysogenic, temperate, obligately lytic; for plasmid: + incompatibility group; for eukaryote: asexual, sexual; other more specific + values (e.g., incompatibility group) are allowed' + description: 'The type of reproduction from the parent stock. Values for this + field is specific to different taxa. For phage or virus: lytic/lysogenic/temperate/obligately + lytic. For plasmids: incompatibility group. For eukaryotes: sexual/asexual' + title: propagation + examples: + - value: lytic + in_subset: + - nucleic acid sequence source + slot_uri: MIXS:0000033 + range: string + pulmonary_disord: + description: History of pulmonary disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + lung disease (https://disease-ontology.org/?id=DOID:850) + title: lung/pulmonary disorder + keywords: + - disorder + slot_uri: MIXS:0000269 + range: string + multivalued: true + quad_pos: + description: The quadrant position of the sampling room within the building + title: quadrant position + examples: + - value: West side + slot_uri: MIXS:0000820 + range: QuadPosEnum + radiation_regm: + annotations: + Expected_value: + tag: Expected_value + value: radiation type name;radiation amount;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: rad, gray + description: Information about treatment involving exposure of plant or a plant + part to a particular radiation regimen; should include the radiation type, + amount or intensity administered, treatment regimen including how many times + the treatment was repeated, how long each treatment lasted, and the start and + end time of the entire treatment; can include multiple radiation regimens + title: radiation regimen + examples: + - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000575 + multivalued: true + rainfall_regm: + annotations: + Expected_value: + tag: Expected_value + value: measurement value;treatment interval and duration + Preferred_unit: + tag: Preferred_unit + value: millimeter + description: Information about treatment involving an exposure to a given amount + of rainfall, treatment regimen including how many times the treatment was repeated, + how long each treatment lasted, and the start and end time of the entire treatment; + can include multiple regimens + title: rainfall regimen + examples: + - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - rain + - regimen + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + slot_uri: MIXS:0000576 + multivalued: true + reactor_type: + annotations: + Expected_value: + tag: Expected_value + value: reactor type name + description: Anaerobic digesters can be designed and engineered to operate using + a number of different process configurations, as batch or continuous, mesophilic, + high solid or low solid, and single stage or multistage + title: reactor type + keywords: + - type + slot_uri: MIXS:0000350 + range: string + reassembly_bin: + description: Has an assembly been performed on a genome bin extracted from a + metagenomic assembly? + title: reassembly post binning + examples: + - value: 'no' + in_subset: + - sequencing + keywords: + - post + slot_uri: MIXS:0000079 + range: boolean + redox_potential: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millivolt + description: Redox potential, measured relative to a hydrogen cell, indicating + oxidation or reduction potential + title: redox potential + examples: + - value: 300 millivolt + slot_uri: MIXS:0000182 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ref_biomaterial: + description: Primary publication if isolated before genome publication; otherwise, + primary genome report + title: reference for biomaterial + examples: + - value: doi:10.1016/j.syapm.2018.01.009 + in_subset: + - nucleic acid sequence source + slot_uri: MIXS:0000025 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + ref_db: + annotations: + Expected_value: + tag: Expected_value + value: names, versions, and references of databases + description: List of database(s) used for ORF annotation, along with version + number and reference to website or publication + title: reference database(s) + examples: + - value: pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 + doi:10.1093/nar/gkw975 + in_subset: + - sequencing + keywords: + - database + string_serialization: '{database};{version};{reference}' + slot_uri: MIXS:0000062 + rel_air_humidity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Partial vapor and air pressure, density of the vapor and air, or + by the actual mass of the vapor and air + title: relative air humidity + comments: + - percent or float? + examples: + - value: '0.8' + keywords: + - air + - humidity + - relative + slot_uri: MIXS:0000121 + range: float + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + rel_humidity_out: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram of air, kilogram of air + description: The recorded outside relative humidity value at the time of sampling + title: outside relative humidity + examples: + - value: 12 per kilogram of air + keywords: + - humidity + - relative + slot_uri: MIXS:0000188 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + rel_location: + description: Location of sampled soil to other parts of the farm e.g. under crop + plant, near irrigation ditch, from the dirt road + title: relative location of sample + examples: + - value: furrow + keywords: + - location + - relative + - sample + slot_uri: MIXS:0001161 + range: string + rel_samp_loc: + description: The sampling location within the train car + title: relative sampling location + examples: + - value: center of car + keywords: + - location + - relative + slot_uri: MIXS:0000821 + range: RelSampLocEnum + rel_to_oxygen: + description: Is this organism an aerobe, anaerobe? Please note that aerobic and + anaerobic are valid descriptors for microbial environments + title: relationship to oxygen + examples: + - value: aerobe + in_subset: + - nucleic acid sequence source + keywords: + - oxygen + - relationship + slot_uri: MIXS:0000015 + range: RelToOxygenEnum + repository_name: + annotations: + Expected_value: + tag: Expected_value + value: Institution + description: The name of the institution where the sample or DNA extract is held + or "sample not available" if the sample was used in its entirety for analysis + or otherwise not retained + title: repository name + examples: + - value: FDA CFSAN Microbiology Laboratories + slot_uri: MIXS:0001152 + range: string + multivalued: true + reservoir: + description: Name of the reservoir (e.g. Carapebus) + title: reservoir name + slot_uri: MIXS:0000303 + range: string + recommended: true + resins_pc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: resins wt% + slot_uri: MIXS:0000134 + range: string + recommended: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + room_air_exch_rate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: liter per hour + description: The rate at which outside air replaces indoor air in a given space + title: room air exchange rate + keywords: + - air + - rate + - room + slot_uri: MIXS:0000169 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + room_architec_elem: + description: The unique details and component parts that, together, form the + architecture of a distinguisahable space within a built structure + title: room architectural elements + keywords: + - room + slot_uri: MIXS:0000233 + range: string + room_condt: + description: The condition of the room at the time of sampling + title: room condition + examples: + - value: new + keywords: + - condition + - room + slot_uri: MIXS:0000822 + range: RoomCondtEnum + room_connected: + description: List of rooms connected to the sampling room by a doorway + title: rooms connected by a doorway + examples: + - value: office + keywords: + - doorway + - room + slot_uri: MIXS:0000826 + range: RoomConnectedEnum + room_count: + description: The total count of rooms in the built structure including all room + types + title: room count + keywords: + - count + - room + slot_uri: MIXS:0000234 + range: integer + room_dim: + annotations: + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: meter + description: The length, width and height of sampling room + title: room dimensions + examples: + - value: 4 meter x 4 meter x 4 meter + keywords: + - dimensions + - room + string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}' + slot_uri: MIXS:0000192 + room_door_dist: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Distance between doors (meters) in the hallway between the sampling + room and adjacent rooms + title: room door distance + keywords: + - distance + - door + - room + slot_uri: MIXS:0000193 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_door_share: + description: List of room(s) (room number, room name) sharing a door with the + sampling room + title: rooms that share a door with sampling room + keywords: + - door + - room + slot_uri: MIXS:0000242 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + room_hallway: + description: List of room(s) (room number, room name) located in the same hallway + as sampling room + title: rooms that are on the same hallway + keywords: + - hallway + - room + slot_uri: MIXS:0000238 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + room_loc: + description: The position of the room within the building + title: room location in building + examples: + - value: interior room + keywords: + - location + - room + slot_uri: MIXS:0000823 + range: RoomLocEnum + room_moist_dam_hist: + description: The history of moisture damage or mold in the past 12 months. Number + of events of moisture damage or mold observed + title: room moisture damage or mold history + keywords: + - history + - moisture + - room + slot_uri: MIXS:0000235 + range: integer + room_net_area: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square feet, square meter + description: The net floor area of sampling room. Net area excludes wall thicknesses + title: room net area + keywords: + - area + - room + slot_uri: MIXS:0000194 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_occup: + description: Count of room occupancy at time of sampling + title: room occupancy + keywords: + - room + slot_uri: MIXS:0000236 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_samp_pos: + description: The horizontal sampling position in the room relative to architectural + elements + title: room sampling position + examples: + - value: south corner + keywords: + - room + slot_uri: MIXS:0000824 + range: RoomSampPosEnum + room_type: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The main purpose or activity of the sampling room. A room is any + distinguishable space within a structure + title: room type + examples: + - value: bathroom + keywords: + - room + - type + string_serialization: '[attic|bathroom|closet|conference room|elevator|examining + room|hallway|kitchen|mail room|private office|open office|stairwell|,restroom|lobby|vestibule|mechanical + or electrical room|data center|laboratory_wet|laboratory_dry|gymnasium|natatorium|auditorium|lockers|cafe|warehouse]' + slot_uri: MIXS:0000825 + room_vol: + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic feet, cubic meter + description: Volume of sampling room + title: room volume + keywords: + - room + - volume + slot_uri: MIXS:0000195 + range: string + pattern: ^[1-9][0-9]* .*$ + structured_pattern: + syntax: ^{integer} {text}$ + interpolated: true + partial_match: true + room_wall_share: + description: List of room(s) (room number, room name) sharing a wall with the + sampling room + title: rooms that share a wall with sampling room + keywords: + - room + - wall + slot_uri: MIXS:0000243 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$ + structured_pattern: + syntax: ^{room_name};{room_number}$ + interpolated: true + partial_match: true + room_window_count: + description: Number of windows in the room + title: room window count + keywords: + - count + - room + - window + slot_uri: MIXS:0000237 + range: integer + root_cond: + description: Relevant rooting conditions such as field plot size, sowing density, + container dimensions, number of plants per container + title: rooting conditions + examples: + - value: http://himedialabs.com/TD/PT158.pdf + keywords: + - condition + slot_uri: MIXS:0001061 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + root_med_carbon: + annotations: + Expected_value: + tag: Expected_value + value: carbon source name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Source of organic carbon in the culture rooting medium; e.g. sucrose + title: rooting medium carbon + examples: + - value: sucrose + keywords: + - carbon + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000577 + root_med_macronutr: + annotations: + Expected_value: + tag: Expected_value + value: macronutrient name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Measurement of the culture rooting medium macronutrients (N,P, K, + Ca, Mg, S); e.g. KH2PO4 (170 mg/L) + title: rooting medium macronutrients + examples: + - value: KH2PO4;170 milligram per liter + keywords: + - macronutrients + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000578 + root_med_micronutr: + annotations: + Expected_value: + tag: Expected_value + value: micronutrient name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Measurement of the culture rooting medium micronutrients (Fe, Mn, + Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L) + title: rooting medium micronutrients + examples: + - value: H3BO3;6.2 milligram per liter + keywords: + - micronutrients + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000579 + root_med_ph: + description: pH measurement of the culture rooting medium; e.g. 5.5 + title: rooting medium pH + examples: + - value: '7.5' + keywords: + - ph + slot_uri: MIXS:0001062 + range: float + root_med_regl: + annotations: + Expected_value: + tag: Expected_value + value: regulator name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Growth regulators in the culture rooting medium such as cytokinins, + auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA + title: rooting medium regulators + examples: + - value: abscisic acid;0.75 milligram per liter + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000581 + root_med_solid: + description: Specification of the solidifying agent in the culture rooting medium; + e.g. agar + title: rooting medium solidifier + examples: + - value: agar + slot_uri: MIXS:0001063 + range: string + root_med_suppl: + annotations: + Expected_value: + tag: Expected_value + value: supplement name;measurement value + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Organic supplements of the culture rooting medium, such as vitamins, + amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic + acid (0.5 mg/L) + title: rooting medium organic supplements + examples: + - value: nicotinic acid;0.5 milligram per liter + keywords: + - organic + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000580 + route_transmission: + description: Description of path taken by the symbiotic host organism being sampled + in order to establish a symbiotic relationship with the host (with which it + was observed at the time of sampling) via a mode of transmission (specified + in mode_transmission) + title: route of transmission + keywords: + - route + slot_uri: MIXS:0001316 + range: RouteTransmissionEnum + salinity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: practical salinity unit, percentage + description: The total concentration of all dissolved salts in a liquid or solid + sample. While salinity can be measured by a complete chemical analysis, this + method is difficult and time consuming. More often, it is instead derived from + the conductivity measurement. This is known as practical salinity. These derivations + compare the specific conductance of the sample to a salinity standard such + as seawater + title: salinity + examples: + - value: 25 practical salinity unit + keywords: + - salinity + slot_uri: MIXS:0000183 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + salt_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter + description: Information about treatment involving use of salts as supplement + to liquid and soil growth media; should include the name of salt, amount administered, + treatment regimen including how many times the treatment was repeated, how + long each treatment lasted, and the start and end time of the entire treatment; + can include multiple salt regimens + title: salt regimen + examples: + - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + - salt + slot_uri: MIXS:0000582 + range: string + multivalued: true + samp_capt_status: + description: Reason for the sample + title: sample capture status + examples: + - value: farm sample + keywords: + - sample + - status + slot_uri: MIXS:0000860 + range: SampCaptStatusEnum + samp_collect_device: + annotations: + Expected_value: + tag: Expected_value + value: device name + description: The device used to collect an environmental sample. This field accepts + terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). + This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094) + title: sample collection device + in_subset: + - nucleic acid sequence source + keywords: + - device + - sample + string_serialization: '{termLabel} [{termID}]|{text}' + slot_uri: MIXS:0000002 + samp_collect_method: + description: The method employed for collecting the sample + title: sample collection method + in_subset: + - nucleic acid sequence source + keywords: + - method + - sample + slot_uri: MIXS:0001225 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + samp_collect_point: + description: Sampling point on the asset were sample was collected (e.g. Wellhead, + storage tank, separator, etc). If "other" is specified, please propose entry + in "additional info" field + title: sample collection point + examples: + - value: well + keywords: + - sample + slot_uri: MIXS:0001015 + range: SampCollectPointEnum + required: true + samp_dis_stage: + description: Stage of the disease at the time of sample collection, e.g. inoculation, + penetration, infection, growth and reproduction, dissemination of pathogen + title: sample disease stage + examples: + - value: infection + keywords: + - disease + - sample + slot_uri: MIXS:0000249 + range: SampDisStageEnum + samp_floor: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The floor of the building, where the sampling room is located + title: sampling floor + examples: + - value: 4th floor + keywords: + - floor + string_serialization: '[1st floor|2nd floor|{integer} floor|basement|lobby]' + slot_uri: MIXS:0000828 + samp_loc_condition: + description: The condition of the sample location at the time of sampling + title: sample location condition + examples: + - value: new + keywords: + - condition + - location + - sample + slot_uri: MIXS:0001257 + range: SampLocConditionEnum + samp_loc_corr_rate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter per year + description: Metal corrosion rate is the speed of metal deterioration due to + environmental conditions. As environmental conditions change corrosion rates + change accordingly. Therefore, long term corrosion rates are generally more + informative than short term rates and for that reason they are preferred during + reporting. In the case of suspected MIC, corrosion rate measurements at the + time of sampling might provide insights into the involvement of certain microbial + community members in MIC as well as potential microbial interplays + title: corrosion rate at sample location + keywords: + - location + - rate + - sample + slot_uri: MIXS:0000136 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{float} *- *{float} {unit}$ + interpolated: true + partial_match: true + samp_mat_process: + description: A brief description of any processing applied to the sample during + or after retrieving the sample from environment, or a link to the relevant + protocol(s) performed + title: sample material processing + examples: + - value: filtering of seawater, storing samples in ethanol + in_subset: + - nucleic acid sequence source + keywords: + - material + - process + - sample + slot_uri: MIXS:0000016 + range: string + samp_md: + annotations: + Expected_value: + tag: Expected_value + value: measurement value;enumeration + Preferred_unit: + tag: Preferred_unit + value: meter + description: In non deviated well, measured depth is equal to the true vertical + depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated + wells, the MD is the length of trajectory of the borehole measured from the + same reference or datum. Common datums used are ground level (GL), drilling + rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). + If "other" is specified, please propose entry in "additional info" field + title: sample measured depth + examples: + - value: 1534 meter;MSL + keywords: + - depth + - measurement + - sample + string_serialization: '{float} {unit};[GL|DF|RT|KB|MSL|other]' + slot_uri: MIXS:0000413 + samp_name: + annotations: + Preferred_unit: + tag: Preferred_unit + value: '' + description: A local identifier or name that for the material sample used for + extracting nucleic acids, and subsequent sequencing. It can refer either to + the original material collected or to any derived sub-samples. It can have + any format, but we suggest that you make it concise, unique and consistent + within your lab, and as informative as possible. INSDC requires every sample + name from a single Submitter to be unique. Use of a globally unique identifier + for the field source_mat_id is recommended in addition to sample_name + title: sample name + examples: + - value: ISDsoil1 + in_subset: + - investigation + keywords: + - sample + slot_uri: MIXS:0001107 + range: string + required: true + samp_pooling: + description: Physical combination of several instances of like material, e.g. + RNA extracted from samples or dishes of cell cultures into one big aliquot + of cells. Please provide a short description of the samples that were pooled + title: sample pooling + examples: + - value: 5uL of extracted genomic DNA from 5 leaves were pooled + keywords: + - pooling + - sample + slot_uri: MIXS:0001153 + range: string + multivalued: true + samp_preserv: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliliter + description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, + etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml) + title: preservative added to sample + keywords: + - sample + slot_uri: MIXS:0000463 + range: string + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + samp_purpose: + annotations: + Expected_value: + tag: Expected_value + value: enumeration or {text} + description: The reason that the sample was collected + title: purpose of sampling + examples: + - value: field trial + keywords: + - purpose + string_serialization: '[active surveillance in response to an outbreak|active + surveillance not initiated by an outbreak|clinical trial|cluster investigation|environmental + assessment|farm sample|field trial|for cause|industry internal investigation|market + sample|passive surveillance|population based studies|research|research and + development] or {text}' + slot_uri: MIXS:0001151 + samp_rep_biol: + description: Measurements of biologically distinct samples that show biological + variation + title: biological sample replicate + examples: + - value: 6 replicates + keywords: + - sample + slot_uri: MIXS:0001226 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_rep_tech: + description: Repeated measurements of the same sample that show independent measures + of the noise associated with the equipment and the protocols + title: technical sample replicate + examples: + - value: 10 replicates + keywords: + - sample + slot_uri: MIXS:0001227 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_room_id: + description: Sampling room number. This ID should be consistent with the designations + on the building floor plans + title: sampling room ID or name + keywords: + - identifier + - room + slot_uri: MIXS:0000244 + range: integer + samp_size: + description: The total amount or size (volume (ml), mass (g) or area (m2) ) of + sample collected + title: amount or size of sample collected + examples: + - value: 5 liter + in_subset: + - nucleic acid sequence source + keywords: + - sample + - size + slot_uri: MIXS:0000001 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_sort_meth: + description: Method by which samples are sorted; open face filter collecting + total suspended particles, prefilter to remove particles larger than X micrometers + in diameter, where common values of X would be 10 and 2.5 full size sorting + in a cascade impactor + title: sample size sorting method + keywords: + - method + - sample + - size + slot_uri: MIXS:0000216 + range: string + multivalued: true + samp_source_mat_cat: + annotations: + Expected_value: + tag: Expected_value + value: GENEPIO:0001237 + description: This is the scientific role or category that the subject organism + or material has with respect to an investigation. This field accepts terms + listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237 + or http://purl.obolibrary.org/obo/OBI_0100051) + title: sample source material category + examples: + - value: environmental (swab or sampling) [GENEPIO:0001732] + keywords: + - material + - sample + - source + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0001154 + samp_stor_device: + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C4318 + description: The container used to store the sample. This field accepts terms + listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the + proper descriptor is not listed please use text to describe the storage device + title: sample storage device + examples: + - value: Whirl Pak sampling bag [GENEPIO:0002122] + keywords: + - device + - sample + - storage + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001228 + samp_stor_media: + description: The liquid that is added to the sample collection device prior to + sampling. If the sample is pre-hydrated, indicate the liquid media the sample + is pre-hydrated with for storage purposes. This field accepts terms listed + under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). + If the proper descriptor is not listed please use text to describe the sample + storage media + title: sample storage media + examples: + - value: peptone water medium [MICRO:0000548] + keywords: + - sample + - storage + slot_uri: MIXS:0001229 + range: string + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + samp_store_dur: + description: Duration for which the sample was stored. Indicate the duration + for which the sample was stored written in ISO 8601 format + title: sample storage duration + examples: + - value: P1Y6M + keywords: + - duration + - period + - sample + - storage + slot_uri: MIXS:0000116 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + samp_store_loc: + annotations: + Expected_value: + tag: Expected_value + value: location name + description: Location at which sample was stored, usually name of a specific + freezer/room + title: sample storage location + examples: + - value: Freezer no:5 + keywords: + - location + - sample + - storage + slot_uri: MIXS:0000755 + range: string + samp_store_sol: + annotations: + Expected_value: + tag: Expected_value + value: solution name + description: Solution within which sample was stored, if any + title: sample storage solution + examples: + - value: 5% ethanol + keywords: + - sample + - storage + slot_uri: MIXS:0001317 + range: string + samp_store_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which sample was stored, e.g. -80 degree Celsius + title: sample storage temperature + examples: + - value: -80 degree Celsius + keywords: + - sample + - storage + - temperature + slot_uri: MIXS:0000110 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_subtype: + description: Name of sample sub-type. For example if "sample type" is "Produced + Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified, + please propose entry in "additional info" field + title: sample subtype + examples: + - value: biofilm + keywords: + - sample + slot_uri: MIXS:0000999 + range: SampSubtypeEnum + recommended: true + samp_surf_moisture: + description: Degree of water held on a sampled surface. If present, user can + state the degree of water held on surface (intermittent moisture, submerged). + If no surface moisture is present indicate not present + title: sample surface moisture + examples: + - value: submerged + keywords: + - moisture + - sample + - surface + slot_uri: MIXS:0001256 + range: SampSurfMoistureEnum + multivalued: true + samp_taxon_id: + description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa + sample. Use 'synthetic metagenome for mock community/positive controls, or + 'blank sample' for negative controls + title: taxonomy ID of DNA sample + examples: + - value: Gut Metagenome [NCBITaxon:749906] + in_subset: + - investigation + keywords: + - dna + - identifier + - sample + - taxon + slot_uri: MIXS:0001320 + range: string + required: true + pattern: ^.* \[NCBITaxon:\d+\]$ + structured_pattern: + syntax: ^{text} \[{NCBItaxon_id}\]$ + interpolated: true + partial_match: true + samp_time_out: + annotations: + Expected_value: + tag: Expected_value + value: time + Preferred_unit: + tag: Preferred_unit + value: hour + description: The recent and long term history of outside sampling + title: sampling time outside + keywords: + - time + string_serialization: '{float}' + slot_uri: MIXS:0000196 + samp_transport_cond: + annotations: + Expected_value: + tag: Expected_value + value: measurement value;measurement value + Preferred_unit: + tag: Preferred_unit + value: days;degree Celsius + description: Sample transport duration (in days or hrs) and temperature the sample + was exposed to (e.g. 5.5 days; 20 C) + title: sample transport conditions + examples: + - value: 5 days;-20 degree Celsius + keywords: + - condition + - sample + - transport + string_serialization: '{float} {unit};{float} {unit}' + slot_uri: MIXS:0000410 + samp_transport_cont: + description: Conatiner in which the sample was stored during transport. Indicate + the location name + title: sample transport container + examples: + - value: cooler + keywords: + - sample + - transport + slot_uri: MIXS:0001230 + range: SampTransportContEnum + samp_transport_dur: + annotations: + Preferred_unit: + tag: Preferred_unit + value: days + description: The duration of time from when the sample was collected until processed. + Indicate the duration for which the sample was stored written in ISO 8601 format + title: sample transport duration + examples: + - value: P10D + keywords: + - duration + - period + - sample + - transport + slot_uri: MIXS:0001231 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + samp_transport_temp: + annotations: + Expected_value: + tag: Expected_value + value: text or measurement value + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature at which sample was transported, e.g. -20 or 4 degree + Celsius + title: sample transport temperature + examples: + - value: 4 degree Celsius + keywords: + - sample + - temperature + - transport + string_serialization: '{float} {unit} {text}' + slot_uri: MIXS:0001232 + samp_tvdss: + annotations: + Expected_value: + tag: Expected_value + value: measurement value or measurement value range + Preferred_unit: + tag: Preferred_unit + value: meter + description: Depth of the sample i.e. The vertical distance between the sea level + and the sampled position in the subsurface. Depth can be reported as an interval + for subsurface samples e.g. 1325.75-1362.25 m + title: sample true vertical depth subsea + keywords: + - depth + - sample + string_serialization: '{float}-{float} {unit}' + slot_uri: MIXS:0000409 + recommended: true + samp_type: + description: The type of material from which the sample was obtained. For the + Hydrocarbon package, samples include types like core, rock trimmings, drill + cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, + produced water, injected water, swabs, etc. For the Food Package, samples are + usually categorized as food, body products or tissues, or environmental material. + This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246) + title: sample type + examples: + - value: built environment sample [GENEPIO:0001248] + keywords: + - sample + - type + slot_uri: MIXS:0000998 + range: string + required: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + samp_vol_we_dna_ext: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliliter, gram, milligram, square centimeter + description: 'Volume (ml) or mass (g) of total collected sample processed for + DNA extraction. Note: total sample collected should be entered under the term + Sample Size (MIXS:0000001)' + title: sample volume or weight for DNA extraction + examples: + - value: 1500 milliliter + in_subset: + - nucleic acid sequence source + keywords: + - dna + - sample + - volume + - weight + slot_uri: MIXS:0000111 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + samp_weather: + description: The weather on the sampling day + title: sampling day weather + examples: + - value: foggy + keywords: + - day + - weather + slot_uri: MIXS:0000827 + range: SampWeatherEnum + samp_well_name: + description: Name of the well (e.g. BXA1123) where sample was taken + title: sample well name + keywords: + - sample + slot_uri: MIXS:0000296 + range: string + recommended: true + saturates_pc: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis + method that divides crude oil components according to their polarizability + and polarity. There are three main methods to obtain SARA results. The most + popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 + (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' + title: saturates wt% + slot_uri: MIXS:0000131 + range: string + recommended: true + pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{name};{float} {unit}$ + interpolated: true + partial_match: true + sc_lysis_approach: + description: Method used to free DNA from interior of the cell(s) or particle(s) + title: single cell or viral particle lysis approach + examples: + - value: enzymatic + in_subset: + - sequencing + keywords: + - particle + - single + slot_uri: MIXS:0000076 + range: ScLysisApproachEnum + sc_lysis_method: + annotations: + Expected_value: + tag: Expected_value + value: kit, protocol name + description: Name of the kit or standard protocol used for cell(s) or particle(s) + lysis + title: single cell or viral particle lysis kit protocol + examples: + - value: ambion single cell lysis kit + in_subset: + - sequencing + keywords: + - kit + - particle + - protocol + - single + slot_uri: MIXS:0000054 + range: string + season: + annotations: + Expected_value: + tag: Expected_value + value: autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], + winter [NCIT:C94730] + description: The season when sampling occurred. Any of the four periods into + which the year is divided by the equinoxes and solstices. This field accepts + terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729) + title: season + comments: + - autumn [NCIT:C94733] does not match ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$ + - would require ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\]$ + examples: + - value: autumn [NCIT:C94733] + keywords: + - season + string_serialization: '{termLabel} [{termID}]' + slot_uri: MIXS:0000829 + range: string + pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:[a-zA-Z0-9]+\]$ + season_environment: + description: Treatment involving an exposure to a particular season (e.g. Winter, + summer, rabi, rainy etc.), treatment regimen including how many times the treatment + was repeated, how long each treatment lasted, and the start and end time of + the entire treatment + title: seasonal environment + examples: + - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - environment + - season + slot_uri: MIXS:0001068 + range: string + multivalued: true + season_humidity: + description: Average humidity of the region throughout the growing season + title: mean seasonal humidity + comments: + - percent or float? + examples: + - value: '0.25' + keywords: + - humidity + - mean + - season + slot_uri: MIXS:0001148 + range: float + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + season_precpt: + annotations: + Preferred_unit: + tag: Preferred_unit + value: millimeter + description: The average of all seasonal precipitation values known, or an estimated + equivalent value derived by such methods as regional indexes or Isohyetal maps + title: mean seasonal precipitation + examples: + - value: 75 millimeters + keywords: + - mean + - season + slot_uri: MIXS:0000645 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + season_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Mean seasonal temperature + title: mean seasonal temperature + examples: + - value: 18 degree Celsius + keywords: + - mean + - season + - temperature + slot_uri: MIXS:0000643 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + season_use: + description: The seasons the space is occupied + title: seasonal use + examples: + - value: Winter + keywords: + - season + - use + slot_uri: MIXS:0000830 + range: SeasonUseEnum + secondary_treatment: + annotations: + Expected_value: + tag: Expected_value + value: secondary treatment type + description: The process for substantially degrading the biological content of + the sewage + title: secondary treatment + keywords: + - secondary + - treatment + slot_uri: MIXS:0000351 + range: string + sediment_type: + description: Information about the sediment type based on major constituents + title: sediment type + examples: + - value: biogenous + keywords: + - sediment + - type + slot_uri: MIXS:0001078 + range: SedimentTypeEnum + seq_meth: + description: Sequencing machine used. Where possible the term should be taken + from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103) + title: sequencing method + examples: + - value: 454 Genome Sequencer FLX [OBI:0000702] + in_subset: + - sequencing + keywords: + - method + slot_uri: MIXS:0000050 + range: string + required: true + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + seq_quality_check: + annotations: + Expected_value: + tag: Expected_value + value: none or manually edited + description: Indicate if the sequence has been called by automatic systems (none) + or undergone a manual editing procedure (e.g. by inspecting the raw data or + chromatograms). Applied only for sequences that are not submitted to SRA,ENA + or DRA + title: sequence quality check + examples: + - value: none + in_subset: + - sequencing + keywords: + - quality + slot_uri: MIXS:0000051 + range: SeqQualityCheckEnum + sequencing_kit: + annotations: + Expected_value: + tag: Expected_value + value: name of sequencing kit used + description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved + chemistry, cluster density and read length as well as improve quality (Q) scores. + Reagent components are encoded to interact with the sequencing system to validate + compatibility with user-defined applications. Indicate name of the sequencing + kit + title: sequencing kit + examples: + - value: NextSeq 500/550 High Output Kit v2.5 (75 Cycles) + keywords: + - kit + slot_uri: MIXS:0001155 + range: string + sequencing_location: + description: The location the sequencing run was performed. Indicate the name + of the lab or core facility where samples were sequenced + title: sequencing location + examples: + - value: University of Maryland Genomics Resource Center + keywords: + - location + slot_uri: MIXS:0001156 + range: string + serovar_or_serotype: + description: A characterization of a cell or microorganism based on the antigenic + properties of the molecules on its surface. Indicate the name of a serovar + or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy + title: serovar or serotype + examples: + - value: Escherichia coli strain O157:H7 [NCIT:C86883] + slot_uri: MIXS:0001157 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + sewage_type: + annotations: + Expected_value: + tag: Expected_value + value: sewage type name + description: Type of wastewater treatment plant as municipial or industrial + title: sewage type + keywords: + - type + slot_uri: MIXS:0000215 + range: string + sexual_act: + annotations: + Expected_value: + tag: Expected_value + value: partner sex;frequency + description: Current sexual partner and frequency of sex + title: sexual activity + slot_uri: MIXS:0000285 + range: string + shad_dev_water_mold: + description: Signs of the presence of mold or mildew on the shading device + title: shading device signs of water/mold + examples: + - value: no presence of mold visible + keywords: + - device + slot_uri: MIXS:0000834 + range: MoldVisibilityEnum + shading_device_cond: + description: The physical condition of the shading device at the time of sampling + title: shading device condition + examples: + - value: new + keywords: + - condition + - device + slot_uri: MIXS:0000831 + range: DamagedRupturedEnum + shading_device_loc: + description: The location of the shading device in relation to the built structure + title: shading device location + examples: + - value: exterior + keywords: + - device + - location + slot_uri: MIXS:0000832 + range: ShadingDeviceLocEnum + shading_device_mat: + annotations: + Expected_value: + tag: Expected_value + value: material name + description: The material the shading device is composed of + title: shading device material + keywords: + - device + - material + slot_uri: MIXS:0000245 + range: string + shading_device_type: + description: The type of shading device + title: shading device type + examples: + - value: slatted aluminum + description: was slatted aluminum awning + keywords: + - device + - type + slot_uri: MIXS:0000835 + range: ShadingDeviceTypeEnum + sieving: + annotations: + Expected_value: + tag: Expected_value + value: design name and/or size;amount + description: Collection design of pooled samples and/or sieve size and amount + of sample sieved + title: sieving + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000322 + silicate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter + description: Concentration of silicate + title: silicate + examples: + - value: 0.05 micromole per liter + slot_uri: MIXS:0000184 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sim_search_meth: + description: Tool used to compare ORFs with database, along with version and + cutoffs used + title: similarity search method + examples: + - value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score + in_subset: + - sequencing + keywords: + - method + slot_uri: MIXS:0000063 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + size_frac: + annotations: + Expected_value: + tag: Expected_value + value: filter size value range + description: Filtering pore size used in sample preparation + title: size fraction selected + examples: + - value: 0-0.22 micrometer + in_subset: + - nucleic acid sequence source + keywords: + - fraction + - size + string_serialization: '{float}-{float} {unit}' + slot_uri: MIXS:0000017 + size_frac_low: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample. + Materials smaller than the size threshold are excluded from the sample + title: size-fraction lower threshold + examples: + - value: 0.2 micrometer + keywords: + - lower + slot_uri: MIXS:0000735 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + size_frac_up: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micrometer + description: Mesh or pore size of the device used to retain the sample. Materials + larger than the size threshold are excluded from the sample. + title: size-fraction upper threshold + examples: + - value: 20 micrometer + keywords: + - upper + slot_uri: MIXS:0000736 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + slope_aspect: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree + description: The direction a slope faces. While looking down a slope use a compass + to record the direction you are facing (direction or degrees); e.g., nw or + 315 degrees. This measure provides an indication of sun and wind exposure that + will influence soil temperature and evapotranspiration + title: slope aspect + keywords: + - slope + slot_uri: MIXS:0000647 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + slope_gradient: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Commonly called 'slope'. The angle between ground surface and a + horizontal line (in percent). This is the direction that overland water would + flow. This measure is usually taken with a hand level meter or clinometer + title: slope gradient + keywords: + - slope + slot_uri: MIXS:0000646 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sludge_retent_time: + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours + description: The time activated sludge remains in reactor + title: sludge retention time + keywords: + - time + slot_uri: MIXS:0000669 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + smoker: + description: Specification of smoking status + title: smoker + examples: + - value: 'yes' + slot_uri: MIXS:0000262 + range: boolean + sodium: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Sodium concentration in the sample + title: sodium + examples: + - value: 10.5 milligram per liter + slot_uri: MIXS:0000428 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_conductivity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliSiemens per centimeter + title: soil conductivity + examples: + - value: 10 milliSiemens per centimeter + keywords: + - soil + slot_uri: MIXS:0001158 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_cover: + annotations: + Expected_value: + tag: Expected_value + value: subclass of 'environmental material', http://purl.obolibrary.org/obo/ENVO_00010483 + description: Material covering the sampled soil. This field accepts terms under + ENVO:00010483, environmental material + title: soil cover + examples: + - value: bare soil [ENVO01001616] + keywords: + - soil + string_serialization: bare soil [ENVO:01001616] + slot_uri: MIXS:0001159 + soil_horizon: + description: Specific layer in the land area which measures parallel to the soil + surface and possesses physical characteristics which differ from the layers + above and beneath + title: soil horizon + examples: + - value: A horizon + keywords: + - horizon + - soil + slot_uri: MIXS:0001082 + range: SoilHorizonEnum + soil_pH: + title: soil pH + examples: + - value: '7.2' + keywords: + - ph + - soil + slot_uri: MIXS:0001160 + range: float + soil_porosity: + annotations: + Expected_value: + tag: Expected_value + value: percent porosity + Preferred_unit: + tag: Preferred_unit + value: percentage + description: Porosity of soil or deposited sediment is volume of voids divided + by the total volume of sample + title: soil sediment porosity + examples: + - value: '0.2' + keywords: + - porosity + - sediment + - soil + string_serialization: '{percentage}' + slot_uri: MIXS:0001162 + soil_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of soil at the time of sampling + title: soil temperature + examples: + - value: 25 degrees Celsius + keywords: + - soil + - temperature + slot_uri: MIXS:0001163 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_texture: + description: The relative proportion of different grain sizes of mineral particles + in a soil, as described using a standard system; express as % sand (50 um to + 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty + clay loam) optional + title: soil texture + keywords: + - soil + - texture + slot_uri: MIXS:0000335 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soil_texture_class: + description: One of the 12 soil texture classes use to describe soil texture + based on the relative proportion of different grain sizes of mineral particles + [sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil + title: soil texture classification + examples: + - value: silty clay loam + keywords: + - classification + - soil + - texture + slot_uri: MIXS:0001164 + range: SoilTextureClassEnum + soil_texture_meth: + description: Reference or method used in determining soil texture + title: soil texture method + examples: + - value: https://uwlab.soils.wisc.edu/wp-content/uploads/sites/17/2015/09/particle_size.pdf + keywords: + - method + - soil + - texture + slot_uri: MIXS:0000336 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + soil_type: + annotations: + Expected_value: + tag: Expected_value + value: ENVO:00001998 + description: Description of the soil type or classification. This field accepts + terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple + terms can be separated by pipes + title: soil type + examples: + - value: plinthosol [ENVO:00002250] + keywords: + - soil + - type + slot_uri: MIXS:0000332 + soil_type_meth: + description: Reference or method used in determining soil series name or other + lower-level classification + title: soil type method + examples: + - value: https://www.lrh.usace.army.mil/Portals/38/docs/PR/BluestoneSFEIS/Appendix%20K-Soil%20Descriptions.pdf + keywords: + - method + - soil + - type + slot_uri: MIXS:0000334 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + solar_irradiance: + annotations: + Preferred_unit: + tag: Preferred_unit + value: kilowatts per square meter per day, ergs per square centimeter per + second + description: The amount of solar energy that arrives at a specific area of a + surface during a specific time interval + title: solar irradiance + examples: + - value: 1.36 kilowatts per square meter per day + slot_uri: MIXS:0000112 + range: string + multivalued: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + soluble_inorg_mat: + annotations: + Expected_value: + tag: Expected_value + value: soluble inorganic material name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter, parts per million + description: Concentration of substances such as ammonia, road-salt, sea-salt, + cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc + title: soluble inorganic material + keywords: + - inorganic + - material + - soluble + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000672 + multivalued: true + soluble_org_mat: + annotations: + Expected_value: + tag: Expected_value + value: soluble organic material name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, mole per liter, gram per liter, parts per million + description: Concentration of substances such as urea, fruit sugars, soluble + proteins, drugs, pharmaceuticals, etc + title: soluble organic material + keywords: + - material + - organic + - soluble + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000673 + multivalued: true + soluble_react_phosp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of soluble reactive phosphorus + title: soluble reactive phosphorus + examples: + - value: 0.1 milligram per liter + keywords: + - phosphorus + - soluble + slot_uri: MIXS:0000738 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sop: + annotations: + Expected_value: + tag: Expected_value + value: reference to SOP + description: Standard operating procedures used in assembly and/or annotation + of genomes, metagenomes or environmental sequences + title: relevant standard operating procedures + examples: + - value: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/ + in_subset: + - sequencing + keywords: + - procedures + string_serialization: '{PMID}|{DOI}|{URL}' + slot_uri: MIXS:0000090 + multivalued: true + sort_tech: + description: Method used to sort/isolate cells or particles of interest + title: sorting technology + examples: + - value: optical manipulation + in_subset: + - sequencing + slot_uri: MIXS:0000075 + range: SortTechEnum + source_mat_id: + annotations: + Expected_value: + tag: Expected_value + value: 'for cultures of microorganisms: identifiers for two culture collections; + for other material a unique arbitrary identifer' + description: A unique identifier assigned to a material sample (as defined by + http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular + digital record of a material sample) used for extracting nucleic acids, and + subsequent sequencing. The identifier can refer either to the original material + collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, + /bio_material, or /culture_collection may or may not share the same value as + the source_mat_id field. For instance, the /specimen_voucher qualifier and + source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen + voucher and sampled tissue with the same identifier. However, the /culture_collection + qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while + source_mat_id would refer to an identifier from some derived culture from which + the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2) + title: source material identifiers + examples: + - value: MPI012345 + in_subset: + - nucleic acid sequence source + keywords: + - identifier + - material + - source + slot_uri: MIXS:0000026 + range: string + multivalued: true + source_uvig: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Type of dataset from which the UViG was obtained + title: source of UViGs + examples: + - value: viral fraction metagenome (virome) + in_subset: + - nucleic acid sequence source + keywords: + - source + string_serialization: '[metagenome (not viral targeted)|viral fraction metagenome + (virome)|sequence-targeted metagenome|metatranscriptome (not viral targeted)|viral + fraction RNA metagenome (RNA virome)|sequence-targeted RNA metagenome|microbial + single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate + microbial genome|other]' + slot_uri: MIXS:0000035 + space_typ_state: + description: Customary or normal state of the space + title: space typical state + examples: + - value: typically occupied + slot_uri: MIXS:0000770 + range: SpaceTypStateEnum + required: true + spec_intended_cons: + description: Food consumer type, human or animal, for which the food product + is produced and marketed. This field accepts terms listed under food consumer + group (http://purl.obolibrary.org/obo/FOODON_03510136) + title: specific intended consumer + examples: + - value: senior as food consumer [FOODON:03510254] + keywords: + - consumer + slot_uri: MIXS:0001234 + range: string + multivalued: true + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$ + structured_pattern: + syntax: ^{termLabel} \[{termID}\]$ + interpolated: true + partial_match: true + special_diet: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Specification of special diet; can include multiple special diets + title: special diet + examples: + - value: other:vegan + keywords: + - diet + string_serialization: '[low carb|reduced calorie|vegetarian|other(to be specified)]' + slot_uri: MIXS:0000905 + multivalued: true + specific: + description: 'The building specifications. If design is chosen, indicate phase: + conceptual, schematic, design development, construction documents' + title: specifications + examples: + - value: construction + slot_uri: MIXS:0000836 + range: SpecificEnum + specific_host: + annotations: + Expected_value: + tag: Expected_value + value: host scientific name, taxonomy ID + description: Report the host's taxonomic name and/or NCBI taxonomy ID + title: host scientific name + examples: + - value: Homo sapiens and/or 9606 + in_subset: + - nucleic acid sequence source + keywords: + - host + - host. + string_serialization: '{text}|{NCBI taxid}' + slot_uri: MIXS:0000029 + specific_humidity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram of air, kilogram of air + description: The mass of water vapour in a unit mass of moist air, usually expressed + as grams of vapour per kilogram of air, or, in air conditioning, as grains + per pound + title: specific humidity + examples: + - value: 15 per kilogram of air + keywords: + - humidity + slot_uri: MIXS:0000214 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + spikein_AMR: + annotations: + Expected_value: + tag: Expected_value + value: measurement value ARO:3004299 + description: Qualitative description of a microbial response to antimicrobial + agents. Bacteria may be susceptible or resistant to a broad range of antibiotic + drugs or drug classes, with several intermediate states or phases. This field + accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299) + title: antimicrobial phenotype of spike-in bacteria + examples: + - value: wild type [ARO:3004432] + keywords: + - antimicrobial + - spike + string_serialization: '{float} {unit};{termLabel} [{termID}]' + slot_uri: MIXS:0001235 + multivalued: true + spikein_antibiotic: + annotations: + Expected_value: + tag: Expected_value + value: drug name; concentration + description: Antimicrobials used in research study to assess effects of exposure + on microbiome of a specific site. Please list antimicrobial, common name and/or + class and concentration used for spike-in + title: spike-in with antibiotics + examples: + - value: Tetracycline at 5 mg/ml + keywords: + - spike + string_serialization: '{text} {integer}' + slot_uri: MIXS:0001171 + multivalued: true + spikein_count: + annotations: + Expected_value: + tag: Expected_value + value: organism name;measurement value;enumeration + Preferred_unit: + tag: Preferred_unit + value: colony forming units per milliliter; colony forming units per gram + of dry weight + description: 'Total cell count of any organism (or group of organisms) per gram, + volume or area of sample, should include name of organism followed by count. + The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should + also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR)' + title: spike-in organism count + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + keywords: + - count + - organism + - spike + string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]' + slot_uri: MIXS:0001335 + spikein_growth_med: + description: A liquid or gel containing nutrients, salts, and other factors formulated + to support the growth of microorganisms, cells, or plants (National Cancer + Institute Thesaurus). A growth medium is a culture medium which has the disposition + to encourage growth of particular bacteria to the exclusion of others in the + same growth environment. In this case, list the culture medium used to propagate + the spike-in bacteria during preparation of spike-in inoculum. This field accepts + terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). + If the proper descriptor is not listed please use text to describe the spike + in growth media + title: spike-in growth medium + examples: + - value: LB broth [MCO:0000036] + keywords: + - growth + - spike + slot_uri: MIXS:0001169 + range: string + multivalued: true + pattern: ^.*|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$ + structured_pattern: + syntax: ^{text}|({termLabel} \[{termID}\])$ + interpolated: true + partial_match: true + spikein_metal: + annotations: + Expected_value: + tag: Expected_value + value: heavy metal name or chemical symbol; concentration + description: Heavy metals used in research study to assess effects of exposure + on microbiome of a specific site. Please list heavy metals and concentration + used for spike-in + title: spike-in with heavy metals + examples: + - value: Cd at 20 ppm + keywords: + - heavy + - spike + string_serialization: '{text} {integer}' + slot_uri: MIXS:0001172 + multivalued: true + spikein_org: + description: Taxonomic information about the spike-in organism(s). This field + accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + Multiple terms can be separated by pipes + title: spike in organism + examples: + - value: Listeria monocytogenes [NCIT:C86502]|28901 + keywords: + - organism + - spike + slot_uri: MIXS:0001167 + range: string + multivalued: true + pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$ + structured_pattern: + syntax: ^({termLabel} \[{termID}\])|{integer}$ + interpolated: true + partial_match: true + spikein_serovar: + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C14250 or antigenic formula or serovar name + description: Taxonomic information about the spike-in organism(s) at the serovar + or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + Multiple terms can be separated by pipes + title: spike-in bacterial serovar or serotype + examples: + - value: Escherichia coli strain O157:H7 [NCIT:C86883]|83334 + keywords: + - spike + string_serialization: '{termLabel} [{termID}]|{integer}' + slot_uri: MIXS:0001168 + multivalued: true + spikein_strain: + annotations: + Expected_value: + tag: Expected_value + value: NCIT:C14250 or NCBI taxid or text + description: Taxonomic information about the spike-in organism(s) at the strain + level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). + This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. + Multiple terms can be separated by pipes + title: spike-in microbial strain + examples: + - value: '169963' + keywords: + - microbial + - spike + string_serialization: '{termLabel} [{termID}]|{integer}' + slot_uri: MIXS:0001170 + multivalued: true + sr_dep_env: + description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). + If "other" is specified, please propose entry in "additional info" field + title: source rock depositional environment + examples: + - value: Marine + keywords: + - environment + - source + slot_uri: MIXS:0000996 + range: SrDepEnvEnum + sr_geol_age: + description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). + If "other" is specified, please propose entry in "additional info" field' + title: source rock geological age + examples: + - value: Silurian + keywords: + - age + - source + slot_uri: MIXS:0000997 + range: GeolAgeEnum + sr_kerog_type: + description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic + and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ + fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris + (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). + If "other" is specified, please propose entry in "additional info" field' + title: source rock kerogen type + examples: + - value: Type IV + keywords: + - source + - type + slot_uri: MIXS:0000994 + range: SrKerogTypeEnum + sr_lithology: + description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). + If "other" is specified, please propose entry in "additional info" field + title: source rock lithology + examples: + - value: Coal + keywords: + - lithology + - source + slot_uri: MIXS:0000995 + range: SrLithologyEnum + standing_water_regm: + description: Treatment involving an exposure to standing water during a plant's + life span, types can be flood water or standing water, treatment regimen including + how many times the treatment was repeated, how long each treatment lasted, + and the start and end time of the entire treatment; can include multiple regimens + title: standing water regimen + examples: + - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + - water + slot_uri: MIXS:0001069 + range: string + multivalued: true + ster_meth_samp_room: + annotations: + Expected_value: + tag: Expected_value + value: ENVO:01001026 + description: The method used to sterilize the sampling room. This field accepts + terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026). + If the proper descriptor is not listed, please use text to describe the sampling + room sterilization method. Multiple terms can be separated by pipes + title: sampling room sterilization method + examples: + - value: ultraviolet radiation [ENVO:21001216]|infrared radiation [ENVO:21001214] + keywords: + - method + - room + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001259 + multivalued: true + store_cond: + annotations: + Expected_value: + tag: Expected_value + value: storage condition type;duration + description: Explain how and for how long the soil sample was stored before DNA + extraction (fresh/frozen/other) + title: storage conditions + examples: + - value: -20 degree Celsius freezer;P2Y10D + keywords: + - condition + - storage + string_serialization: '{text};{period}' + slot_uri: MIXS:0000327 + study_complt_stat: + annotations: + Expected_value: + tag: Expected_value + value: YES or NO due to (1)adverse event (2) non-compliance (3) lost to follow + up (4)other-specify + description: Specification of study completion status, if no the reason should + be specified + title: study completion status + examples: + - value: no;non-compliance + keywords: + - status + string_serialization: '{boolean};[adverse event|non-compliance|lost to follow + up|other-specify]' + slot_uri: MIXS:0000898 + study_design: + annotations: + Expected_value: + tag: Expected_value + value: OBI:0500000 + description: A plan specification comprised of protocols (which may specify how + and what kinds of data will be gathered) that are executed as part of an investigation + and is realized during a study design execution. This field accepts terms under + study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor + is not listed please use text to describe the study design. Multiple terms + can be separated by pipes + title: study design + examples: + - value: in vitro design [OBI:0001285] + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001236 + multivalued: true + study_inc_dur: + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: Sample incubation duration if unpublished or unvalidated method + is used. Indicate the timepoint written in ISO 8601 format + title: study incubation duration + examples: + - value: PT24H + keywords: + - duration + - incubation + - period + slot_uri: MIXS:0001237 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + study_inc_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Sample incubation temperature if unpublished or unvalidated method + is used + title: study incubation temperature + examples: + - value: 37 degree Celsius + keywords: + - incubation + - temperature + slot_uri: MIXS:0001238 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + study_timecourse: + annotations: + Preferred_unit: + tag: Preferred_unit + value: dpi + description: For time-course research studies involving samples of the food commodity, + indicate the total duration of the time-course study + title: time-course duration + examples: + - value: 2 days post inoculation + keywords: + - duration + - period + - time + slot_uri: MIXS:0001239 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + study_tmnt: + annotations: + Expected_value: + tag: Expected_value + value: MCO:0000866 + description: A process in which the act is intended to modify or alter some other + material entity. From the study design, each treatment is comprised of one + level of one or multiple factors. This field accepts terms listed under treatment + (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not + listed please use text to describe the study treatment. Multiple terms can + be separated by one or more pipes + title: study treatment + examples: + - value: Factor A|spike-in|levels high, medium, low + keywords: + - treatment + string_serialization: '{text}|{termLabel} [{termID}]' + slot_uri: MIXS:0001240 + multivalued: true + subspecf_gen_lin: + annotations: + Expected_value: + tag: Expected_value + value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, + e.g. serovar, biotype, ecotype, variety, cultivar + description: Information about the genetic distinctness of the sequenced organism + below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any + relevant genetic typing schemes like Group I plasmid. Subspecies should not + be recorded in this term, but in the NCBI taxonomy. Supply both the lineage + name and the lineage rank separated by a colon, e.g., biovar:abc123 + title: subspecific genetic lineage + examples: + - value: serovar:Newport + in_subset: + - nucleic acid sequence source + keywords: + - lineage + string_serialization: '{rank name}:{text}' + slot_uri: MIXS:0000020 + substructure_type: + description: The substructure or under building is that largely hidden section + of the building which is built off the foundations to the ground floor level + title: substructure type + examples: + - value: basement + keywords: + - type + slot_uri: MIXS:0000767 + range: SubstructureTypeEnum + multivalued: true + sulfate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of sulfate in the sample + title: sulfate + examples: + - value: 5 micromole per liter + keywords: + - sulfate + slot_uri: MIXS:0000423 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sulfate_fw: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Original sulfate concentration in the hydrocarbon resource + title: sulfate in formation water + keywords: + - sulfate + - water + slot_uri: MIXS:0000407 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + sulfide: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: Concentration of sulfide in the sample + title: sulfide + examples: + - value: 2 micromole per liter + keywords: + - sulfide + slot_uri: MIXS:0000424 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + surf_air_cont: + description: Contaminant identified on surface + title: surface-air contaminant + examples: + - value: radon + slot_uri: MIXS:0000759 + range: SurfAirContEnum + recommended: true + multivalued: true + surf_humidity: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percentage + description: 'Surfaces: water activity as a function of air and material moisture' + title: surface humidity + comments: + - percent or float? + examples: + - value: '0.1' + keywords: + - humidity + - surface + slot_uri: MIXS:0000123 + range: float + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + surf_material: + description: Surface materials at the point of sampling + title: surface material + examples: + - value: wood + keywords: + - material + - surface + slot_uri: MIXS:0000758 + range: SurfMaterialEnum + surf_moisture: + annotations: + Preferred_unit: + tag: Preferred_unit + value: parts per million, gram per cubic meter, gram per square meter + description: Water held on a surface + title: surface moisture + examples: + - value: 0.01 gram per square meter + keywords: + - moisture + - surface + slot_uri: MIXS:0000128 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + surf_moisture_ph: + description: ph measurement of surface + title: surface moisture pH + examples: + - value: '7' + keywords: + - moisture + - ph + - surface + slot_uri: MIXS:0000760 + range: float + recommended: true + surf_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of the surface at the time of sampling + title: surface temperature + examples: + - value: 15 degree Celsius + keywords: + - surface + - temperature + slot_uri: MIXS:0000125 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + suspend_part_matter: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Concentration of suspended particulate matter + title: suspended particulate matter + examples: + - value: 0.5 milligram per liter + keywords: + - particle + - particulate + - suspended + slot_uri: MIXS:0000741 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + suspend_solids: + annotations: + Expected_value: + tag: Expected_value + value: suspended solid name;measurement value + Preferred_unit: + tag: Preferred_unit + value: gram, microgram, milligram per liter, mole per liter, gram per liter, + part per million + description: Concentration of substances including a wide variety of material, + such as silt, decaying plant and animal matter; can include multiple substances + title: suspended solids + keywords: + - solids + - suspended + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000150 + multivalued: true + sym_life_cycle_type: + annotations: + Expected_value: + tag: Expected_value + value: type of life cycle of the symbiotic organism (host of the samples) + description: Type of life cycle of the symbiotic host species (the thing being + sampled). Simple life cycles occur within a single host, complex ones within + multiple different hosts over the course of their normal life cycle + title: symbiotic host organism life cycle type + examples: + - value: complex life cycle + keywords: + - host + - host. + - life + - organism + - symbiosis + - type + slot_uri: MIXS:0001300 + range: SymLifeCycleTypeEnum + required: true + symbiont_host_role: + description: Role of the host in the life cycle of the symbiotic organism + title: host of the symbiont role + examples: + - value: intermediate + keywords: + - host + - host. + - symbiosis + slot_uri: MIXS:0001303 + range: SymbiontHostRoleEnum + recommended: true + tan: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: 'Total Acid Number (TAN) is a measurement of acidity that is determined + by the amount of potassium hydroxide in milligrams that is needed to neutralize + the acids in one gram of oil. It is an important quality measurement of crude + oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)' + title: total acid number + keywords: + - number + - total + slot_uri: MIXS:0000120 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + target_gene: + description: Targeted gene or locus name for marker gene studies + title: target gene + examples: + - value: 16S rRNA, 18S rRNA, nif, amoA, rpo + in_subset: + - sequencing + keywords: + - target + slot_uri: MIXS:0000044 + range: string + target_subfragment: + description: Name of subfragment of a gene or locus. Important to e.g. identify + special regions on marker genes like V6 on 16S rRNA + title: target subfragment + examples: + - value: V6, V9, ITS + in_subset: + - sequencing + keywords: + - target + slot_uri: MIXS:0000045 + range: string + tax_class: + description: Method used for taxonomic classification, along with reference database + used, classification rank, and thresholds used to classify new genomes + title: taxonomic classification + examples: + - value: vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, + default parameters) + in_subset: + - sequencing + keywords: + - classification + - taxon + slot_uri: MIXS:0000064 + range: string + tax_ident: + description: The phylogenetic marker(s) used to assign an organism name to the + SAG or MAG + title: taxonomic identity marker + examples: + - value: other + description: was other rpoB gene + in_subset: + - sequencing + keywords: + - identifier + - marker + - taxon + slot_uri: MIXS:0000053 + range: TaxIdentEnum + temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Temperature of the sample at the time of sampling + title: temperature + examples: + - value: 25 degree Celsius + in_subset: + - environment + keywords: + - temperature + slot_uri: MIXS:0000113 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + temp_out: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: The recorded temperature value at sampling time outside + title: temperature outside house + examples: + - value: 5 degree Celsius + keywords: + - house + - temperature + slot_uri: MIXS:0000197 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tertiary_treatment: + annotations: + Expected_value: + tag: Expected_value + value: tertiary treatment type + description: The process providing a final treatment stage to raise the effluent + quality before it is discharged to the receiving environment + title: tertiary treatment + keywords: + - treatment + slot_uri: MIXS:0000352 + range: string + tidal_stage: + description: Stage of tide + title: tidal stage + examples: + - value: high tide + slot_uri: MIXS:0000750 + range: TidalStageEnum + tillage: + description: Note method(s) used for tilling + title: history/tillage + examples: + - value: chisel + keywords: + - history + slot_uri: MIXS:0001081 + range: TillageEnum + multivalued: true + time_last_toothbrush: + description: Specification of the time since last toothbrushing + title: time since last toothbrushing + comments: + - P2H45M does not match ^P(?!$)(\\d+Y)?(\\d+M)?(\\d+W)?(\\d+D)?(T(?=\\d+[HMS])(\\d+H)?(\\d+M)?(\\d+S)?)?$ + - problematic ISO 8601 period validation + examples: + - value: PT2H45M + keywords: + - time + slot_uri: MIXS:0000924 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + time_since_last_wash: + description: Specification of the time since last wash + title: time since last wash + examples: + - value: P1D + keywords: + - time + slot_uri: MIXS:0000943 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + timepoint: + annotations: + Preferred_unit: + tag: Preferred_unit + value: hours or days + description: Time point at which a sample or observation is made or taken from + a biomaterial as measured from some reference point. Indicate the timepoint + written in ISO 8601 format + title: timepoint + examples: + - value: PT24H + keywords: + - time + slot_uri: MIXS:0001173 + range: string + pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$ + structured_pattern: + syntax: ^{duration}$ + interpolated: true + partial_match: true + tiss_cult_growth_med: + description: Description of plant tissue culture growth media used + title: tissue culture growth media + examples: + - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf + keywords: + - culture + - growth + slot_uri: MIXS:0001070 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|.*$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}|{text}$ + interpolated: true + partial_match: true + toluene: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of toluene in the sample + title: toluene + slot_uri: MIXS:0000154 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_carb: + description: Total carbon content + title: total carbon + keywords: + - carbon + - total + slot_uri: MIXS:0000525 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_depth_water_col: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: Measurement of total depth of water column + title: total depth of water column + examples: + - value: 500 meter + keywords: + - depth + - total + - water + slot_uri: MIXS:0000634 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_diss_nitro: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter + description: 'Total dissolved nitrogen concentration, reported as nitrogen, measured + by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen' + title: total dissolved nitrogen + examples: + - value: 40 microgram per liter + keywords: + - dissolved + - nitrogen + - total + slot_uri: MIXS:0000744 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_inorg_nitro: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter + description: Total inorganic nitrogen content + title: total inorganic nitrogen + examples: + - value: 40 microgram per liter + keywords: + - inorganic + - nitrogen + - total + slot_uri: MIXS:0000745 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_iron: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, milligram per kilogram + description: Concentration of total iron in the sample + title: total iron + keywords: + - total + slot_uri: MIXS:0000105 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_nitro: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter, milligram per liter + description: 'Total nitrogen concentration of water samples, calculated by: total + nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured + without filtering, reported as nitrogen' + title: total nitrogen concentration + examples: + - value: 50 micromole per liter + keywords: + - concentration + - nitrogen + - total + slot_uri: MIXS:0000102 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_nitro_cont_meth: + description: Reference or method used in determining the total nitrogen + title: total nitrogen content method + examples: + - value: https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/0471142913.fab0102s00 + keywords: + - content + - method + - nitrogen + - total + slot_uri: MIXS:0000338 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + tot_nitro_content: + description: Total nitrogen content of the sample + title: total nitrogen content + examples: + - value: 35 milligrams Nitrogen per kilogram of soil + keywords: + - content + - nitrogen + - total + slot_uri: MIXS:0000530 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_org_c_meth: + description: Reference or method used in determining total organic carbon + title: total organic carbon method + examples: + - value: https://www.epa.gov/sites/production/files/2015-12/documents/9060a.pdf + keywords: + - carbon + - method + - organic + - total + slot_uri: MIXS:0000337 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + tot_org_carb: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram Carbon per kilogram sample material + description: Total organic carbon content + title: total organic carbon + examples: + - value: '0.02' + keywords: + - carbon + - organic + - total + slot_uri: MIXS:0000533 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_part_carb: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Total particulate carbon content + title: total particulate carbon + examples: + - value: 35 micromole per liter + keywords: + - carbon + - particle + - particulate + - total + slot_uri: MIXS:0000747 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_phosp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: micromole per liter, milligram per liter, parts per million + description: 'Total phosphorus concentration in the sample, calculated by: total + phosphorus = total dissolved phosphorus + particulate phosphorus' + title: total phosphorus + examples: + - value: 0.03 milligram per liter + keywords: + - phosphorus + - total + slot_uri: MIXS:0000117 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_phosphate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: microgram per liter, micromole per liter + description: Total amount or concentration of phosphate + title: total phosphate + keywords: + - phosphate + - total + slot_uri: MIXS:0000689 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tot_sulfur: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of total sulfur in the sample + title: total sulfur + keywords: + - sulfur + - total + slot_uri: MIXS:0000419 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + train_line: + description: The subway line name + title: train line + examples: + - value: red + keywords: + - train + slot_uri: MIXS:0000837 + range: TrainLineEnum + train_stat_loc: + description: The train station collection location + title: train station collection location + examples: + - value: forest hills + keywords: + - location + - train + slot_uri: MIXS:0000838 + range: TrainStatLocEnum + train_stop_loc: + description: The train stop collection location + title: train stop collection location + examples: + - value: end + keywords: + - location + - stop + - train + slot_uri: MIXS:0000839 + range: TrainStopLocEnum + travel_out_six_month: + annotations: + Expected_value: + tag: Expected_value + value: country name + description: Specification of the countries travelled in the last six months; + can include multiple travels + title: travel outside the country in last six months + keywords: + - months + slot_uri: MIXS:0000268 + range: string + multivalued: true + trna_ext_software: + description: Tools used for tRNA identification + title: tRNA extraction software + examples: + - value: infernal;v2;default parameters + in_subset: + - sequencing + keywords: + - software + slot_uri: MIXS:0000068 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + trnas: + annotations: + Expected_value: + tag: Expected_value + value: value from 0-21 + description: The total number of tRNAs identified from the SAG or MAG + title: number of standard tRNAs extracted + examples: + - value: '18' + in_subset: + - sequencing + keywords: + - number + string_serialization: '{integer}' + slot_uri: MIXS:0000067 + trophic_level: + description: Trophic levels are the feeding position in a food chain. Microbes + can be a range of producers (e.g. chemolithotroph) + title: trophic level + examples: + - value: heterotroph + in_subset: + - nucleic acid sequence source + keywords: + - level + slot_uri: MIXS:0000032 + range: TrophicLevelEnum + turbidity: + description: Measure of the amount of cloudiness or haziness in water caused + by individual particles + title: turbidity + examples: + - value: 0.3 nephelometric turbidity units + slot_uri: MIXS:0000191 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tvdss_of_hcr_press: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where + the original pressure was measured (e.g. 1578 m) + title: depth (TVDSS) of hydrocarbon resource pressure + keywords: + - depth + - hydrocarbon + - pressure + - resource + slot_uri: MIXS:0000397 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + tvdss_of_hcr_temp: + annotations: + Preferred_unit: + tag: Preferred_unit + value: meter + description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where + the original temperature was measured (e.g. 1345 m) + title: depth (TVDSS) of hydrocarbon resource temperature + keywords: + - depth + - hydrocarbon + - resource + - temperature + slot_uri: MIXS:0000394 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + twin_sibling: + description: Specification of twin sibling presence + title: twin sibling presence + examples: + - value: 'yes' + keywords: + - presence + slot_uri: MIXS:0000326 + range: boolean + typ_occup_density: + description: Customary or normal density of occupants + title: typical occupant density + examples: + - value: '25' + keywords: + - density + slot_uri: MIXS:0000771 + range: float + required: true + type_of_symbiosis: + description: Type of biological interaction established between the symbiotic + host organism being sampled and its respective host + title: type of symbiosis + examples: + - value: parasitic + keywords: + - symbiosis + - type + slot_uri: MIXS:0001307 + range: TypeOfSymbiosisEnum + recommended: true + urine_collect_meth: + description: Specification of urine collection method + title: urine/collection method + examples: + - value: catheter + keywords: + - method + slot_uri: MIXS:0000899 + range: UrineCollectMethEnum + urobiom_sex: + annotations: + Expected_value: + tag: Expected_value + value: sex of the symbiotic organism (host of the samples); enumeration + description: Physical sex of the host + title: host sex + keywords: + - host + - host. + slot_uri: MIXS:0000862 + range: UrobiomSexEnum + urogenit_disord: + description: History of urogenital disorders, can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary + system disease (https://disease-ontology.org/?id=DOID:18) + title: urogenital disorder + keywords: + - disorder + slot_uri: MIXS:0000289 + range: string + multivalued: true + urogenit_tract_disor: + description: History of urogenital tract disorders; can include multiple disorders. + The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, + urinary system disease (https://disease-ontology.org/?id=DOID:18) + title: urine/urogenital tract disorder + keywords: + - disorder + slot_uri: MIXS:0000278 + range: string + multivalued: true + ventilation_rate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per minute, liters per second + description: Ventilation rate of the system in the sampled premises + title: ventilation rate + examples: + - value: 750 cubic meter per minute + keywords: + - rate + slot_uri: MIXS:0000114 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + ventilation_type: + annotations: + Expected_value: + tag: Expected_value + value: ventilation type name + description: Ventilation system used in the sampled premises + title: ventilation type + examples: + - value: Operable windows + keywords: + - type + slot_uri: MIXS:0000756 + range: string + multivalued: true + vfa: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of Volatile Fatty Acids in the sample + title: volatile fatty acids + slot_uri: MIXS:0000152 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + vfa_fw: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter + description: Original volatile fatty acid concentration in the hydrocarbon resource + title: vfa in formation water + keywords: + - water + slot_uri: MIXS:0000408 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + vir_ident_software: + annotations: + Expected_value: + tag: Expected_value + value: software name, version and relevant parameters + description: Tool(s) used for the identification of UViG as a viral genome, software + or protocol name including version number, parameters, and cutoffs used + title: viral identification software + examples: + - value: VirSorter; 1.0.4; Virome database, category 2 + in_subset: + - sequencing + keywords: + - identifier + - software + string_serialization: '{software};{version};{parameters}' + slot_uri: MIXS:0000081 + virus_enrich_appr: + description: List of approaches used to enrich the sample for viruses, if any + title: virus enrichment approach + examples: + - value: filtration + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse + - value: FeCl Precipitation + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse + - value: ultracentrifugation + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse + - value: DNAse + description: was filtration + FeCl Precipitation + ultracentrifugation + + DNAse + in_subset: + - nucleic acid sequence source + keywords: + - enrichment + slot_uri: MIXS:0000036 + range: VirusEnrichApprEnum + vis_media: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: The building visual media + title: visual media + examples: + - value: 3D scans + string_serialization: '[photos|videos|commonly of the building|site context (adjacent + buildings, vegetation, terrain, streets)|interiors|equipment|3D scans]' + slot_uri: MIXS:0000840 + viscosity: + annotations: + Expected_value: + tag: Expected_value + value: measurement value;measurement value + Preferred_unit: + tag: Preferred_unit + value: cP at degree Celsius + description: A measure of oil's resistance to gradual deformation by shear + stress or tensile stress (e.g. 3.5 cp; 100 C) + title: viscosity + string_serialization: '{float} {unit};{float} {unit}' + slot_uri: MIXS:0000126 + volatile_org_comp: + annotations: + Expected_value: + tag: Expected_value + value: volatile organic compound name;measurement value + Preferred_unit: + tag: Preferred_unit + value: microgram per cubic meter, parts per million, nanogram per liter + description: Concentration of carbon-based chemicals that easily evaporate at + room temperature; can report multiple volatile organic compounds by entering + numeric values preceded by name of compound + title: volatile organic compounds + examples: + - value: formaldehyde;500 nanogram per liter + keywords: + - organic + string_serialization: '{text};{float} {unit}' + slot_uri: MIXS:0000115 + multivalued: true + wall_area: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The total area of the sampled room's walls + title: wall area + keywords: + - area + - wall + slot_uri: MIXS:0000198 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + wall_const_type: + description: The building class of the wall defined by the composition of the + building elements and fire-resistance rating + title: wall construction type + examples: + - value: fire resistive + keywords: + - type + - wall + slot_uri: MIXS:0000841 + range: WallConstTypeEnum + wall_finish_mat: + description: The material utilized to finish the outer most layer of the wall + title: wall finish material + examples: + - value: wood + keywords: + - material + - wall + slot_uri: MIXS:0000842 + range: WallFinishMatEnum + wall_height: + annotations: + Preferred_unit: + tag: Preferred_unit + value: centimeter + description: The average height of the walls in the sampled room + title: wall height + keywords: + - height + - wall + slot_uri: MIXS:0000221 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + wall_loc: + description: The relative location of the wall within the room + title: wall location + examples: + - value: north + keywords: + - location + - wall + slot_uri: MIXS:0000843 + range: CompassDirections8Enum + wall_surf_treatment: + description: The surface treatment of interior wall + title: wall surface treatment + examples: + - value: paneling + keywords: + - surface + - treatment + - wall + slot_uri: MIXS:0000845 + range: WallSurfTreatmentEnum + wall_texture: + description: The feel, appearance, or consistency of a wall surface + title: wall texture + examples: + - value: popcorn + keywords: + - texture + - wall + slot_uri: MIXS:0000846 + range: CeilingWallTextureEnum + wall_thermal_mass: + annotations: + Preferred_unit: + tag: Preferred_unit + value: joule per degree Celsius + description: The ability of the wall to provide inertia against temperature fluctuations. + Generally this means concrete or concrete block that is either exposed or covered + only with paint + title: wall thermal mass + keywords: + - mass + - wall + slot_uri: MIXS:0000222 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + wall_water_mold: + description: Signs of the presence of mold or mildew on a wall + title: wall signs of water/mold + examples: + - value: no presence of mold visible + keywords: + - wall + slot_uri: MIXS:0000844 + range: MoldVisibilityEnum + wastewater_type: + annotations: + Expected_value: + tag: Expected_value + value: wastewater type name + description: The origin of wastewater such as human waste, rainfall, storm drains, + etc + title: wastewater type + keywords: + - type + slot_uri: MIXS:0000353 + range: string + water_cont_soil_meth: + description: Reference or method used in determining the water content of soil + title: water content method + keywords: + - content + - method + - water + slot_uri: MIXS:0000323 + range: string + pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$ + structured_pattern: + syntax: ^{PMID}|{DOI}|{URL}$ + interpolated: true + partial_match: true + water_content: + annotations: + Preferred_unit: + tag: Preferred_unit + value: gram per gram or cubic centimeter per cubic centimeter + description: Water content measurement + title: water content + keywords: + - content + - water + slot_uri: MIXS:0000185 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_current: + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per second, knots + description: Measurement of magnitude and direction of flow within a fluid + title: water current + examples: + - value: 10 cubic meter per second + keywords: + - water + slot_uri: MIXS:0000203 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_cut: + annotations: + Preferred_unit: + tag: Preferred_unit + value: percent + description: Current amount of water (%) in a produced fluid stream; or the average + of the combined streams + title: water cut + comments: + - percent or float? + examples: + - value: 45% + keywords: + - water + slot_uri: MIXS:0000454 + range: string + required: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_feat_size: + annotations: + Preferred_unit: + tag: Preferred_unit + value: square meter + description: The size of the water feature + title: water feature size + keywords: + - feature + - size + - water + slot_uri: MIXS:0000223 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_feat_type: + description: The type of water feature present within the building being sampled + title: water feature type + examples: + - value: stream + keywords: + - feature + - type + - water + slot_uri: MIXS:0000847 + range: WaterFeatTypeEnum + water_frequency: + annotations: + Expected_value: + tag: Expected_value + value: rate + Preferred_unit: + tag: Preferred_unit + value: per day, per week, per month + description: Number of water delivery events within a given period of time + title: water delivery frequency + examples: + - value: 2 per day + keywords: + - delivery + - frequency + - water + string_serialization: '{float}{unit}' + slot_uri: MIXS:0001174 + water_pH: + title: water pH + examples: + - value: '7.2' + keywords: + - ph + - water + slot_uri: MIXS:0001175 + range: float + water_prod_rate: + annotations: + Preferred_unit: + tag: Preferred_unit + value: cubic meter per day + description: Water production rates per well (e.g. 987 m3 / day) + title: water production rate + keywords: + - production + - rate + - water + slot_uri: MIXS:0000453 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + water_source_adjac: + annotations: + Expected_value: + tag: Expected_value + value: ENVO_01001110 or ENVO_00000070 + description: Description of the environmental features that are adjacent to the + farm water source. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) + and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple + terms can be separated by pipes + title: environmental feature adjacent water source + examples: + - value: feedlot [ENVO:01000627] + keywords: + - adjacent + - environmental + - feature + - source + - water + slot_uri: MIXS:0001122 + range: string + multivalued: true + water_source_shared: + annotations: + Expected_value: + tag: Expected_value + value: enumeration + description: Other users sharing access to the same water source. Multiple terms + can be separated by one or more pipes + title: water source shared + examples: + - value: no sharing + keywords: + - source + - water + string_serialization: '[multiple users, agricutural|multiple users, other|no + sharing]' + slot_uri: MIXS:0001176 + multivalued: true + water_temp_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degree Celsius + description: Information about treatment involving an exposure to water with + varying degree of temperature, treatment regimen including how many times the + treatment was repeated, how long each treatment lasted, and the start and end + time of the entire treatment; can include multiple regimens + title: water temperature regimen + examples: + - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + - temperature + - water + slot_uri: MIXS:0000590 + range: string + multivalued: true + watering_regm: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milliliter, liter + description: Information about treatment involving an exposure to watering frequencies, + treatment regimen including how many times the treatment was repeated, how + long each treatment lasted, and the start and end time of the entire treatment; + can include multiple regimens + title: watering regimen + examples: + - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M + keywords: + - regimen + - water + slot_uri: MIXS:0000591 + range: string + multivalued: true + weekday: + description: The day of the week when sampling occurred + title: weekday + examples: + - value: Sunday + slot_uri: MIXS:0000848 + range: WeekdayEnum + weight_loss_3_month: + annotations: + Expected_value: + tag: Expected_value + value: weight loss specification;measurement value + Preferred_unit: + tag: Preferred_unit + value: kilogram, gram + description: Specification of weight loss in the last three months, if yes should + be further specified to include amount of weight loss + title: weight loss in last three months + examples: + - value: yes;5 kilogram + keywords: + - months + - weight + string_serialization: '{boolean};{float} {unit}' + slot_uri: MIXS:0000295 + wga_amp_appr: + description: Method used to amplify genomic DNA in preparation for sequencing + title: WGA amplification approach + examples: + - value: mda based + in_subset: + - sequencing + slot_uri: MIXS:0000055 + range: WgaAmpApprEnum + wga_amp_kit: + annotations: + Expected_value: + tag: Expected_value + value: kit name + description: Kit used to amplify genomic DNA in preparation for sequencing + title: WGA amplification kit + examples: + - value: qiagen repli-g + in_subset: + - sequencing + keywords: + - kit + slot_uri: MIXS:0000006 + range: string + win: + description: 'A unique identifier of a well or wellbore. This is part of the + Global Framework for Well Identification initiative which is compiled by the + Professional Petroleum Data Management Association (PPDM) in an effort to improve + well identification systems. (Supporting information: https://ppdm.org/ and + http://dl.ppdm.org/dl/690)' + title: well identification number + keywords: + - identifier + - number + slot_uri: MIXS:0000297 + range: string + recommended: true + wind_direction: + annotations: + Preferred_unit: + tag: Preferred_unit + value: degrees or cardinal direction + description: Wind direction is the direction from which a wind originates + title: wind direction + keywords: + - direction + - wind + slot_uri: MIXS:0000757 + range: string + wind_speed: + description: speed of wind measured at the time of sampling + title: wind speed + keywords: + - speed + - wind + slot_uri: MIXS:0000118 + range: string + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true + window_cond: + description: The physical condition of the window at the time of sampling + title: window condition + examples: + - value: rupture + keywords: + - condition + - window + slot_uri: MIXS:0000849 + range: DamagedRupturedEnum + window_cover: + description: The type of window covering + title: window covering + examples: + - value: curtains + keywords: + - window + slot_uri: MIXS:0000850 + range: WindowCoverEnum + window_horiz_pos: + description: The horizontal position of the window on the wall + title: window horizontal position + examples: + - value: middle + keywords: + - window + slot_uri: MIXS:0000851 + range: WindowHorizPosEnum + window_loc: + description: The relative location of the window within the room + title: window location + examples: + - value: west + keywords: + - location + - window + slot_uri: MIXS:0000852 + range: CompassDirections8Enum + window_mat: + description: The type of material used to finish a window + title: window material + examples: + - value: wood + keywords: + - material + - window + slot_uri: MIXS:0000853 + range: WindowMatEnum + window_open_freq: + description: The number of times windows are opened per week + title: window open frequency + keywords: + - frequency + - window + slot_uri: MIXS:0000246 + range: integer + window_size: + annotations: + Expected_value: + tag: Expected_value + value: measurement value + Preferred_unit: + tag: Preferred_unit + value: inch, meter + description: The window's length and width + title: window area/size + keywords: + - window + string_serialization: '{float} {unit} x {float} {unit}' + slot_uri: MIXS:0000224 + window_status: + description: Defines whether the windows were open or closed during environmental + testing + title: window status + examples: + - value: open + keywords: + - status + - window + slot_uri: MIXS:0000855 + range: WindowStatusEnum + window_type: + description: The type of windows + title: window type + examples: + - value: fixed window + keywords: + - type + - window + slot_uri: MIXS:0000856 + range: WindowTypeEnum + window_vert_pos: + description: The vertical position of the window on the wall + title: window vertical position + examples: + - value: middle + keywords: + - window + slot_uri: MIXS:0000857 + range: WindowVertPosEnum + window_water_mold: + description: Signs of the presence of mold or mildew on the window + title: window signs of water/mold + examples: + - value: no presence of mold visible + keywords: + - window + slot_uri: MIXS:0000854 + range: MoldVisibilityEnum + x16s_recover: + description: Can a 16S gene be recovered from the submitted SAG or MAG? + title: 16S recovered + examples: + - value: 'yes' + in_subset: + - sequencing + keywords: + - recover + slot_uri: MIXS:0000065 + range: boolean + x16s_recover_software: + description: Tools used for 16S rRNA gene extraction + title: 16S recovery software + examples: + - value: rambl;v2;default parameters + in_subset: + - sequencing + keywords: + - recover + - software + slot_uri: MIXS:0000066 + range: string + pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$ + structured_pattern: + syntax: ^{software};{version};{parameters}$ + interpolated: true + partial_match: true + xylene: + annotations: + Preferred_unit: + tag: Preferred_unit + value: milligram per liter, parts per million + description: Concentration of xylene in the sample + title: xylene + slot_uri: MIXS:0000156 + range: string + recommended: true + pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? + *.*$ + structured_pattern: + syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ + interpolated: true + partial_match: true +classes: + MigsBa: + description: 'Minimal Information about a Genome Sequence: cultured bacteria/archaea' + title: MIGS bacteria + aliases: + - migs_ba + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - extrachrom_elements + - estimated_size + - samp_vol_we_dna_ext + - pathogenicity + - lib_reads_seqd + - rel_to_oxygen + - encoded_traits + - samp_collect_device + - number_contig + - biotic_relationship + - num_replicons + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - adapters + - assembly_software + - tax_ident + - annot + - trophic_level + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + annot: + recommended: true + assembly_name: + recommended: true + assembly_qual: + required: true + assembly_software: + required: true + biotic_relationship: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + extrachrom_elements: + recommended: true + host_disease_stat: + examples: + - value: rabies [DOID:11260] + recommended: true + isol_growth_condt: + required: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + num_replicons: + required: true + number_contig: + required: true + pathogenicity: + recommended: true + ref_biomaterial: + required: true + rel_to_oxygen: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: swabbing + sop: + recommended: true + source_mat_id: + recommended: true + specific_host: + recommended: true + subspecf_gen_lin: + recommended: true + tax_ident: + recommended: true + temp: + recommended: true + trophic_level: + recommended: true + class_uri: MIXS:0010003 + MigsEu: + description: 'Minimal Information about a Genome Sequence: eukaryote' + title: MIGS eukaryote + aliases: + - migs_eu + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - estimated_size + - extrachrom_elements + - source_mat_id + - samp_vol_we_dna_ext + - ploidy + - pathogenicity + - lib_reads_seqd + - propagation + - samp_collect_device + - number_contig + - biotic_relationship + - num_replicons + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - adapters + - assembly_software + - tax_ident + - annot + - trophic_level + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + annot: + recommended: true + assembly_name: + recommended: true + assembly_qual: + required: true + assembly_software: + required: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + host_disease_stat: + examples: + - value: rabies [DOID:11260] + isol_growth_condt: + required: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + number_contig: + required: true + pathogenicity: + recommended: true + propagation: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: swabbing + sop: + recommended: true + source_mat_id: + recommended: true + subspecf_gen_lin: + recommended: true + tax_ident: + recommended: true + temp: + recommended: true + trophic_level: + recommended: true + class_uri: MIXS:0010002 + MigsOrg: + description: 'Minimal Information about a Genome Sequence: organelle' + title: MIGS org + aliases: + - migs_org + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - extrachrom_elements + - estimated_size + - samp_vol_we_dna_ext + - lib_reads_seqd + - samp_collect_device + - number_contig + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - tax_ident + - annot + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + annot: + recommended: true + assembly_name: + recommended: true + assembly_software: + required: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + extrachrom_elements: + recommended: true + isol_growth_condt: + required: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: swabbing + sop: + recommended: true + source_mat_id: + recommended: true + subspecf_gen_lin: + recommended: true + tax_ident: + recommended: true + temp: + recommended: true + class_uri: MIXS:0010006 + MigsPl: + description: 'Minimal Information about a Genome Sequence: plasmid' + title: MIGS pl + aliases: + - migs_pl + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - estimated_size + - samp_vol_we_dna_ext + - lib_reads_seqd + - encoded_traits + - propagation + - samp_collect_device + - number_contig + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - adapters + - assembly_software + - tax_ident + - annot + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + annot: + recommended: true + assembly_name: + recommended: true + assembly_software: + required: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + encoded_traits: + recommended: true + isol_growth_condt: + required: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + propagation: + required: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: swabbing + sop: + recommended: true + source_mat_id: + recommended: true + specific_host: + recommended: true + subspecf_gen_lin: + recommended: true + tax_ident: + recommended: true + temp: + recommended: true + class_uri: MIXS:0010004 + MigsVi: + description: 'Minimal Information about a Genome Sequence: virus' + title: MIGS virus + aliases: + - migs_vi + is_a: Checklist + mixin: true + slots: + - samp_name + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - assembly_name + - temp + - compl_score + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - estimated_size + - samp_vol_we_dna_ext + - pathogenicity + - lib_reads_seqd + - encoded_traits + - propagation + - samp_collect_device + - number_contig + - biotic_relationship + - num_replicons + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - virus_enrich_appr + - adapters + - assembly_software + - tax_ident + - annot + - pos_cont_type + - subspecf_gen_lin + - feat_pred + - env_local_scale + - compl_software + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + annot: + recommended: true + assembly_name: + recommended: true + assembly_software: + required: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + encoded_traits: + recommended: true + host_disease_stat: + examples: + - value: rabies [DOID:11260] + recommended: true + host_spec_range: + recommended: true + isol_growth_condt: + required: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + num_replicons: + recommended: true + pathogenicity: + recommended: true + propagation: + required: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: swabbing + sop: + recommended: true + source_mat_id: + recommended: true + specific_host: + recommended: true + subspecf_gen_lin: + recommended: true + tax_ident: + recommended: true + temp: + recommended: true + virus_enrich_appr: + recommended: true + class_uri: MIXS:0010005 + Mimag: + description: Minimum Information About a Metagenome-Assembled Genome + title: MIMAG + aliases: + - mimag + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - contam_screen_input + - mid + - assembly_name + - temp + - compl_score + - trnas + - mag_cov_software + - nucl_acid_ext + - samp_size + - alt + - bin_param + - bin_software + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - reassembly_bin + - decontam_software + - samp_collect_device + - number_contig + - trna_ext_software + - lib_layout + - contam_screen_param + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - tax_ident + - contam_score + - annot + - x16s_recover_software + - x16s_recover + - pos_cont_type + - feat_pred + - compl_software + - env_local_scale + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - compl_appr + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + assembly_name: + recommended: true + assembly_qual: + required: true + assembly_software: + required: true + bin_param: + required: true + bin_software: + required: true + compl_score: + required: true + compl_software: + required: true + contam_score: + required: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + experimental_factor: + recommended: true + lib_layout: + recommended: true + lib_reads_seqd: + recommended: true + lib_screen: + recommended: true + lib_size: + recommended: true + lib_vector: + recommended: true + mid: + recommended: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + examples: + - value: swabbing + recommended: true + samp_mat_process: + recommended: true + samp_size: + recommended: true + sop: + recommended: true + source_mat_id: + recommended: true + tax_ident: + required: true + temp: + recommended: true + class_uri: MIXS:0010011 + MimarksC: + description: 'Minimal Information about a Marker Sequence: specimen' + title: MIMARKS specimen + comments: + - for marker gene sequences from cultured or voucher-identifiable specimens + aliases: + - mimarks_c + - MIMARKS-SU + - MIMARKS-specimen + is_a: Checklist + mixin: true + slots: + - samp_name + - pcr_primers + - nucl_acid_amp + - target_subfragment + - temp + - pcr_cond + - nucl_acid_ext + - samp_size + - isol_growth_condt + - alt + - source_mat_id + - extrachrom_elements + - samp_vol_we_dna_ext + - rel_to_oxygen + - samp_collect_device + - biotic_relationship + - seq_quality_check + - project_name + - neg_cont_type + - chimera_check + - trophic_level + - pos_cont_type + - subspecf_gen_lin + - env_local_scale + - samp_mat_process + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - experimental_factor + - target_gene + - associated_resource + - sop + slot_usage: + alt: + recommended: true + biotic_relationship: + recommended: true + chimera_check: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + isol_growth_condt: + required: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + pcr_cond: + recommended: true + pcr_primers: + recommended: true + rel_to_oxygen: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: swabbing + samp_mat_process: + recommended: true + seq_quality_check: + recommended: true + sop: + recommended: true + source_mat_id: + recommended: true + subspecf_gen_lin: + recommended: true + target_gene: + required: true + target_subfragment: + recommended: true + temp: + recommended: true + trophic_level: + recommended: true + class_uri: MIXS:0010009 + MimarksS: + description: 'Minimal Information about a Marker Sequence: survey' + title: MIMARKS survey + comments: + - for marker gene sequences obtained directly from the environment + aliases: + - mimarks_s + - MIMARKS-SP + - MIMARKS-survey + is_a: Checklist + mixin: true + slots: + - samp_name + - pcr_primers + - size_frac + - lib_screen + - nucl_acid_amp + - lib_size + - target_subfragment + - mid + - temp + - nucl_acid_ext + - samp_size + - alt + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - samp_collect_device + - seq_quality_check + - lib_layout + - env_broad_scale + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - chimera_check + - pos_cont_type + - env_local_scale + - samp_mat_process + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - pcr_cond + - experimental_factor + - target_gene + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + assembly_software: + recommended: true + chimera_check: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + experimental_factor: + recommended: true + lib_layout: + recommended: true + lib_reads_seqd: + recommended: true + lib_screen: + recommended: true + lib_size: + recommended: true + lib_vector: + recommended: true + mid: + recommended: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + pcr_cond: + recommended: true + pcr_primers: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + examples: + - value: swabbing + recommended: true + samp_mat_process: + recommended: true + samp_size: + recommended: true + seq_quality_check: + recommended: true + sop: + recommended: true + source_mat_id: + recommended: true + target_gene: + required: true + target_subfragment: + recommended: true + temp: + recommended: true + class_uri: MIXS:0010008 + Mims: + description: Metagenome or Environmental + title: MIMS + aliases: + - mims + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - mid + - assembly_name + - temp + - nucl_acid_ext + - samp_size + - alt + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - samp_collect_device + - number_contig + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - annot + - pos_cont_type + - feat_pred + - env_local_scale + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + annot: + recommended: true + assembly_name: + recommended: true + assembly_qual: + recommended: true + assembly_software: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + experimental_factor: + recommended: true + lib_layout: + recommended: true + lib_reads_seqd: + recommended: true + lib_screen: + recommended: true + lib_size: + recommended: true + lib_vector: + recommended: true + mid: + recommended: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + number_contig: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + examples: + - value: swabbing + recommended: true + samp_mat_process: + recommended: true + samp_size: + recommended: true + sop: + recommended: true + source_mat_id: + recommended: true + temp: + recommended: true + class_uri: MIXS:0010007 + Misag: + description: Minimum Information About a Single Amplified Genome + title: Minimum Information About a Single Amplified Genome + aliases: + - misag + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - ref_db + - nucl_acid_amp + - lib_size + - contam_screen_input + - mid + - assembly_name + - temp + - compl_score + - trnas + - nucl_acid_ext + - samp_size + - alt + - source_mat_id + - samp_vol_we_dna_ext + - lib_reads_seqd + - rel_to_oxygen + - wga_amp_kit + - decontam_software + - samp_collect_device + - number_contig + - trna_ext_software + - sc_lysis_method + - lib_layout + - contam_screen_param + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - adapters + - neg_cont_type + - assembly_software + - tax_ident + - contam_score + - annot + - x16s_recover_software + - x16s_recover + - pos_cont_type + - feat_pred + - compl_software + - env_local_scale + - sort_tech + - samp_mat_process + - sim_search_meth + - depth + - samp_collect_method + - wga_amp_appr + - compl_appr + - env_medium + - samp_taxon_id + - geo_loc_name + - sc_lysis_approach + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + assembly_name: + recommended: true + assembly_qual: + required: true + assembly_software: + required: true + compl_score: + required: true + compl_software: + required: true + contam_score: + required: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + experimental_factor: + recommended: true + lib_layout: + recommended: true + lib_reads_seqd: + recommended: true + lib_screen: + recommended: true + lib_size: + recommended: true + lib_vector: + recommended: true + mid: + recommended: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + examples: + - value: swabbing + recommended: true + samp_mat_process: + recommended: true + samp_size: + recommended: true + sc_lysis_approach: + required: true + sop: + recommended: true + sort_tech: + required: true + source_mat_id: + recommended: true + tax_ident: + required: true + temp: + recommended: true + wga_amp_appr: + required: true + class_uri: MIXS:0010010 + Miuvig: + description: Minimum Information About an Uncultivated Virus Genome + title: Minimum Information About an Uncultivated Virus Genome + aliases: + - miuvig + is_a: Checklist + mixin: true + slots: + - samp_name + - size_frac + - lib_screen + - source_uvig + - ref_db + - nucl_acid_amp + - lib_size + - mid + - assembly_name + - temp + - compl_score + - trnas + - nucl_acid_ext + - samp_size + - alt + - estimated_size + - source_mat_id + - samp_vol_we_dna_ext + - pathogenicity + - lib_reads_seqd + - samp_collect_device + - number_contig + - biotic_relationship + - trna_ext_software + - lib_layout + - assembly_qual + - ref_biomaterial + - project_name + - lib_vector + - host_spec_range + - neg_cont_type + - virus_enrich_appr + - adapters + - assembly_software + - tax_ident + - annot + - pos_cont_type + - feat_pred + - compl_software + - env_local_scale + - samp_mat_process + - sim_search_meth + - host_disease_stat + - depth + - samp_collect_method + - compl_appr + - specific_host + - env_medium + - samp_taxon_id + - geo_loc_name + - collection_date + - seq_meth + - lat_lon + - elev + - env_broad_scale + - tax_class + - experimental_factor + - sort_tech + - sc_lysis_approach + - sc_lysis_method + - wga_amp_appr + - wga_amp_kit + - bin_param + - bin_software + - reassembly_bin + - mag_cov_software + - vir_ident_software + - pred_genome_type + - pred_genome_struc + - detec_type + - otu_class_appr + - otu_seq_comp_appr + - otu_db + - host_pred_appr + - host_pred_est_acc + - associated_resource + - sop + slot_usage: + adapters: + recommended: true + alt: + recommended: true + assembly_name: + recommended: true + assembly_qual: + required: true + assembly_software: + required: true + bin_param: + recommended: true + bin_software: + recommended: true + compl_appr: + recommended: true + compl_score: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + detec_type: + required: true + elev: + recommended: true + experimental_factor: + recommended: true + feat_pred: + recommended: true + host_disease_stat: + examples: + - value: rabies [DOID:11260] + recommended: true + host_pred_appr: + recommended: true + host_pred_est_acc: + recommended: true + lib_layout: + recommended: true + lib_reads_seqd: + recommended: true + lib_screen: + recommended: true + lib_size: + recommended: true + lib_vector: + recommended: true + mid: + recommended: true + nucl_acid_amp: + recommended: true + nucl_acid_ext: + recommended: true + number_contig: + required: true + otu_class_appr: + recommended: true + otu_db: + recommended: true + otu_seq_comp_appr: + recommended: true + pred_genome_struc: + required: true + pred_genome_type: + required: true + reassembly_bin: + recommended: true + ref_db: + recommended: true + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + recommended: true + samp_collect_method: + examples: + - value: swabbing + recommended: true + samp_mat_process: + recommended: true + samp_size: + recommended: true + sc_lysis_approach: + recommended: true + sc_lysis_method: + recommended: true + sim_search_meth: + recommended: true + size_frac: + recommended: true + sop: + recommended: true + sort_tech: + recommended: true + source_mat_id: + recommended: true + source_uvig: + required: true + tax_class: + recommended: true + temp: + recommended: true + vir_ident_software: + required: true + virus_enrich_appr: + required: true + wga_amp_appr: + recommended: true + wga_amp_kit: + recommended: true + class_uri: MIXS:0010012 + Agriculture: + annotations: + use_cases: + tag: use_cases + value: Agricultural Microbiomes Research Coordination Network, model cropping + and plant systems focused on agricultural plant and soil microbe; microbiome + studies in agricultural sites; long-term ecological research in croplands; + eDNA in manure samples; describing agricultural microbiome studies + description: A collection of terms appropriate when sequencing samples obtained + in an agricultural environment. Suitable to capture metadata appropriate to + enhance crop productivity and agroecosystem health with the aim to facilitate + research of agricultural microbiomes and their relationships to plant productivity and + sustainable crop production from diverse crop management contexts. + title: agriculture + aliases: + - MIxS-Ag (agriculture) + is_a: Extension + slots: + - plant_growth_med + - photosynt_activ + - photosynt_activ_meth + - samp_collect_method + - enrichment_protocol + - library_prep_kit + - sequencing_location + - soil_temp + - soil_pH + - soil_conductivity + - rel_location + - soil_cover + - porosity + - soil_texture + - soil_texture_meth + - host_symbiont + - host_disease_stat + - pres_animal_insect + - plant_water_method + - anim_water_method + - farm_water_source + - water_source_shared + - water_pH + - elev + - season + - solar_irradiance + - crop_yield + - season_humidity + - humidity + - adjacent_environment + - chem_administration + - food_prod + - lot_number + - fertilizer_admin + - samp_store_temp + - food_trav_mode + - food_trav_vehic + - farm_equip_san + - farm_equip + - farm_equip_shared + - food_harvest_proc + - plant_struc + - host_dry_mass + - ances_data + - genetic_mod + - food_product_type + - food_source + - spikein_strain + - organism_count + - size_frac_low + - size_frac_up + - cult_isol_date + - samp_pooling + - root_med_macronutr + - root_med_carbon + - root_med_ph + - depth + - specific_host + - pathogenicity + - biotic_relationship + - water_temp_regm + - watering_regm + - standing_water_regm + - gaseous_environment + - fungicide_regm + - climate_environment + - herbicide_regm + - non_min_nutr_regm + - pesticide_regm + - ph_regm + - salt_regm + - season_environment + - temp + - perturbation + - isol_growth_condt + - samp_store_dur + - samp_store_loc + - samp_collect_device + - samp_mat_process + - host_age + - host_common_name + - host_genotype + - host_height + - host_subspecf_genlin + - host_length + - host_life_stage + - host_phenotype + - host_taxid + - host_tot_mass + - host_spec_range + - trophic_level + - plant_product + - samp_size + - oxy_stat_samp + - seq_meth + - samp_vol_we_dna_ext + - pcr_primers + - nucl_acid_ext + - nucl_acid_amp + - lib_size + - lib_reads_seqd + - lib_layout + - lib_vector + - lib_screen + - target_gene + - target_subfragment + - mid + - adapters + - pcr_cond + - seq_quality_check + - chimera_check + - assembly_name + - assembly_qual + - assembly_software + - annot + - associated_resource + - sop + - source_mat_id + - fao_class + - local_class + - local_class_meth + - soil_type + - soil_type_meth + - soil_horizon + - horizon_meth + - link_class_info + - previous_land_use + - prev_land_use_meth + - crop_rotation + - agrochem_addition + - tillage + - fire + - flooding + - extreme_event + - link_climate_info + - annual_temp + - season_temp + - annual_precpt + - season_precpt + - cur_land_use + - slope_gradient + - slope_aspect + - profile_position + - drainage_class + - store_cond + - ph_meth + - cur_vegetation + - cur_vegetation_meth + - tot_org_carb + - tot_org_c_meth + - tot_nitro_content + - tot_nitro_cont_meth + - microbial_biomass + - micro_biomass_meth + - heavy_metals_meth + - tot_carb + - tot_phosphate + - sieving + - pool_dna_extracts + - misc_param + slot_usage: + adapters: + required: true + annot: + recommended: true + assembly_name: + required: true + biotic_relationship: + recommended: true + chem_administration: + required: true + chimera_check: + required: true + climate_environment: + string_serialization: '{text};{period};{interval};{period}' + recommended: true + crop_rotation: + string_serialization: '{boolean};Rn/{timestamp}/{period}' + recommended: true + cur_vegetation: + recommended: true + cur_vegetation_meth: + recommended: true + depth: + examples: + - value: 5 cm + recommended: true + drainage_class: + recommended: true + enrichment_protocol: + recommended: true + extreme_event: + recommended: true + fao_class: + recommended: true + fire: + recommended: true + flooding: + recommended: true + food_product_type: + examples: + - value: delicatessen salad; FOODON:03316276 + food_source: + examples: + - value: red swamp crayfish; FOODON:03412231 + required: true + fungicide_regm: + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + gaseous_environment: + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + heavy_metals_meth: + string_serialization: '{PMID|DOI|URL}' + recommended: true + herbicide_regm: + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + horizon_meth: + recommended: true + host_age: + required: true + host_common_name: + required: true + host_disease_stat: + examples: + - value: downy mildew + recommended: true + host_genotype: + required: true + host_height: + required: true + host_length: + required: true + host_life_stage: + required: true + host_phenotype: + required: true + host_spec_range: + required: true + host_symbiont: + examples: + - value: Paragordius varius + host_taxid: + examples: + - value: '9606' + string_serialization: '{integer}' + required: true + host_tot_mass: + required: true + humidity: + examples: + - value: 30% relative humidity + recommended: true + lib_layout: + recommended: true + lib_reads_seqd: + required: true + lib_screen: + required: true + lib_vector: + required: true + library_prep_kit: + examples: + - value: llumina DNA Prep, (M) Tagmentation + local_class: + recommended: true + local_class_meth: + recommended: true + micro_biomass_meth: + required: true + microbial_biomass: + required: true + mid: + required: true + non_min_nutr_regm: + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + nucl_acid_amp: + required: true + nucl_acid_ext: + required: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + recommended: true + oxy_stat_samp: + recommended: true + pathogenicity: + required: true + pcr_cond: + required: true + pcr_primers: + required: true + perturbation: + recommended: true + pesticide_regm: + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + ph_meth: + recommended: true + ph_regm: + string_serialization: '{float};{period};{interval};{period}' + recommended: true + plant_growth_med: + examples: + - value: hydroponic plant culture media [EO:0007067] + plant_product: + recommended: true + plant_struc: + recommended: true + pool_dna_extracts: + string_serialization: '{boolean};{float} {unit}' + required: true + prev_land_use_meth: + recommended: true + previous_land_use: + recommended: true + profile_position: + recommended: true + rel_location: + recommended: true + salt_regm: + string_serialization: '{text};{float} {unit};{period};{interval};{period}' + recommended: true + samp_collect_device: + examples: + - value: biopsy, niskin bottle, push core + required: true + samp_collect_method: + examples: + - value: environmental swab sampling + samp_mat_process: + required: true + samp_pooling: + recommended: true + samp_size: + required: true + samp_store_dur: + required: true + samp_store_loc: + required: true + samp_vol_we_dna_ext: + required: true + season_environment: + string_serialization: '{text};{period};{interval};{period}' + recommended: true + sieving: + required: true + slope_aspect: + recommended: true + slope_gradient: + recommended: true + soil_conductivity: + description: Conductivity of some soil. + soil_cover: + recommended: true + soil_horizon: + recommended: true + soil_pH: + description: pH of some soil. + soil_type: + required: true + soil_type_meth: + required: true + specific_host: + required: true + standing_water_regm: + string_serialization: '{text};{period};{interval};{period}' + recommended: true + store_cond: + required: true + target_gene: + required: true + target_subfragment: + required: true + temp: + required: true + tillage: + recommended: true + tot_carb: + recommended: true + tot_nitro_cont_meth: + recommended: true + tot_nitro_content: + recommended: true + tot_org_c_meth: + recommended: true + tot_org_carb: + recommended: true + tot_phosphate: + recommended: true + trophic_level: + recommended: true + water_pH: + description: The pH measurement of the sample, or liquid portion of sample, + or aqueous phase of the fluid. + water_temp_regm: + string_serialization: '{float} {unit};{period};{interval};{period}' + recommended: true + watering_regm: + string_serialization: '{float} {unit};{period};{interval};{period}' + recommended: true + class_uri: MIXS:0016018 + Air: + annotations: + use_cases: + tag: use_cases + value: bioaerosol samples, pathogen load in urban air, aerosols + description: A collection of terms appropriate when collecting and sequencing + samples obtained from a gaseous environment. + title: air + aliases: + - MIxS-air + is_a: Extension + slots: + - samp_name + - project_name + - alt + - elev + - barometric_press + - carb_dioxide + - carb_monoxide + - chem_administration + - humidity + - methane + - organism_count + - oxygen + - oxy_stat_samp + - perturbation + - pollutants + - air_PM_concen + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - solar_irradiance + - temp + - ventilation_rate + - ventilation_type + - volatile_org_comp + - wind_direction + - wind_speed + - misc_param + slot_usage: + alt: + required: true + elev: + recommended: true + humidity: + examples: + - value: 25 gram per cubic meter + methane: + examples: + - value: 1800 parts per billion + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + wind_direction: + examples: + - value: Northwest + wind_speed: + examples: + - value: 21 kilometer per hour + class_uri: MIXS:0016000 + BuiltEnvironment: + annotations: + use_cases: + tag: use_cases + value: microbiology studies of the built environment, NASA space station + sampling, MetaSUB transit system sampling, home, hospitals, office buildings + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained in the built-up environment, which includes terms for surface + material, humidity, temperature, moisture and occupancy type along with specific + metadata terms describing the indoor air, building and sample properties. + title: built environment + aliases: + - MIxS-BE (built environment) + is_a: Extension + slots: + - samp_name + - project_name + - surf_material + - surf_air_cont + - rel_air_humidity + - abs_air_humidity + - surf_humidity + - air_temp + - surf_temp + - surf_moisture_ph + - build_occup_type + - surf_moisture + - dew_point + - carb_dioxide + - ventilation_type + - organism_count + - indoor_space + - indoor_surf + - filter_type + - heat_cool_type + - substructure_type + - building_setting + - light_type + - samp_sort_meth + - space_typ_state + - typ_occup_density + - occup_samp + - occup_density_samp + - address + - adj_room + - aero_struc + - amount_light + - arch_struc + - avg_occup + - avg_dew_point + - avg_temp + - bathroom_count + - bedroom_count + - built_struc_age + - built_struc_set + - built_struc_type + - ceil_area + - ceil_cond + - ceil_finish_mat + - ceil_water_mold + - ceil_struc + - ceil_texture + - ceil_thermal_mass + - ceil_type + - cool_syst_id + - date_last_rain + - build_docs + - door_size + - door_cond + - door_direct + - door_loc + - door_mat + - door_move + - door_water_mold + - door_type + - door_comp_type + - door_type_metal + - door_type_wood + - drawings + - elevator + - escalator + - exp_duct + - exp_pipe + - ext_door + - fireplace_type + - floor_age + - floor_area + - floor_cond + - floor_count + - floor_finish_mat + - floor_water_mold + - floor_struc + - floor_thermal_mass + - freq_clean + - freq_cook + - furniture + - gender_restroom + - hall_count + - handidness + - heat_deliv_loc + - heat_sys_deliv_meth + - heat_system_id + - height_carper_fiber + - inside_lux + - int_wall_cond + - last_clean + - max_occup + - mech_struc + - number_plants + - number_pets + - number_resident + - occup_document + - ext_wall_orient + - ext_window_orient + - rel_humidity_out + - pres_animal_insect + - quad_pos + - rel_samp_loc + - room_air_exch_rate + - room_architec_elem + - room_condt + - room_count + - room_dim + - room_door_dist + - room_loc + - room_moist_dam_hist + - room_net_area + - room_occup + - room_samp_pos + - room_type + - room_vol + - room_window_count + - room_connected + - room_hallway + - room_door_share + - room_wall_share + - samp_weather + - samp_floor + - samp_room_id + - samp_time_out + - season + - season_use + - shading_device_cond + - shading_device_loc + - shading_device_mat + - shad_dev_water_mold + - shading_device_type + - specific_humidity + - specific + - temp_out + - train_line + - train_stat_loc + - train_stop_loc + - vis_media + - wall_area + - wall_const_type + - wall_finish_mat + - wall_height + - wall_loc + - wall_water_mold + - wall_surf_treatment + - wall_texture + - wall_thermal_mass + - water_feat_size + - water_feat_type + - weekday + - window_size + - window_cond + - window_cover + - window_horiz_pos + - window_loc + - window_mat + - window_open_freq + - window_water_mold + - window_status + - window_type + - window_vert_pos + slot_usage: + air_temp: + examples: + - value: 20 degree Celsius + required: true + avg_occup: + examples: + - value: '2' + carb_dioxide: + required: true + freq_clean: + string_serialization: '[ Daily| Weekly| Monthly| Quarterly | Annually| other]' + indoor_surf: + required: true + recommended: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + required: true + surf_material: + required: true + recommended: true + ventilation_type: + required: true + class_uri: MIXS:0016001 + FoodAnimalAndAnimalFeed: + annotations: + use_cases: + tag: use_cases + value: Microbiome of farm animals, their feed, and pet food. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from farm animals and their feed. + title: food-animal and animal feed + comments: + - This extension is intended to work alongside the other food extensions (farm + environment, food production facility, and human foods) for capturing contextual + data across the food supply-chain environment. + aliases: + - MIxS-Food (animal and animal feed) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - experimental_factor + - nucl_acid_ext + - organism_count + - spikein_count + - samp_store_temp + - samp_store_dur + - samp_vol_we_dna_ext + - pool_dna_extracts + - temp + - samp_store_loc + - samp_transport_cont + - perturbation + - coll_site_geo_feat + - food_origin + - food_prod + - food_product_type + - food_source + - IFSAC_category + - intended_consumer + - samp_purpose + - animal_am + - animal_am_dur + - animal_am_freq + - animal_am_route + - animal_am_use + - animal_body_cond + - animal_diet + - animal_feed_equip + - animal_group_size + - animal_housing + - animal_sex + - bacterial_density + - cons_food_stor_dur + - cons_food_stor_temp + - cons_purch_date + - cons_qty_purchased + - cult_isol_date + - cult_result + - cult_result_org + - cult_target + - enrichment_protocol + - food_additive + - food_contact_surf + - food_contain_wrap + - food_cooking_proc + - food_dis_point + - food_dis_point_city + - food_ingredient + - food_pack_capacity + - food_pack_integrity + - food_pack_medium + - food_preserv_proc + - food_prior_contact + - food_prod_synonym + - food_product_qual + - food_quality_date + - food_source_age + - food_trace_list + - food_trav_mode + - food_trav_vehic + - food_treat_proc + - HACCP_term + - library_prep_kit + - lot_number + - microb_cult_med + - part_plant_animal + - repository_name + - samp_collect_method + - samp_pooling + - samp_rep_biol + - samp_rep_tech + - samp_source_mat_cat + - samp_stor_device + - samp_stor_media + - samp_transport_dur + - samp_transport_temp + - sequencing_kit + - sequencing_location + - serovar_or_serotype + - spikein_AMR + - spikein_antibiotic + - spikein_growth_med + - spikein_metal + - spikein_org + - spikein_serovar + - spikein_strain + - study_design + - study_inc_dur + - study_inc_temp + - study_timecourse + - study_tmnt + - timepoint + - misc_param + slot_usage: + food_origin: + required: true + food_pack_medium: + examples: + - value: packed in fruit juice [FOODON:03480039] + food_prod: + required: true + food_product_type: + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + examples: + - value: giant tiger prawn [FOODON:03412612] + intended_consumer: + required: true + library_prep_kit: + examples: + - value: Illumina DNA Prep + organism_count: + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + pool_dna_extracts: + string_serialization: '{boolean},{integer}' + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: environmental swab sampling + samp_purpose: + required: true + class_uri: MIXS:0016019 + FoodFarmEnvironment: + annotations: + use_cases: + tag: use_cases + value: Microbiome of farm and field crops as well as environmental samples + including irrigation, soil amendments, and farm equipment. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from the farm environment, including soil, + manure, and food harvesting equipment. + title: food-farm environment + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, food production facility, and human foods) for capturing + contextual data across the food supply-chain environment. + aliases: + - MIxS-Food (farm environment) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - nucl_acid_ext + - humidity + - organism_count + - spikein_count + - samp_store_temp + - solar_irradiance + - ventilation_rate + - samp_store_dur + - wind_speed + - salinity + - samp_vol_we_dna_ext + - previous_land_use + - crop_rotation + - soil_type_meth + - tot_org_c_meth + - tot_nitro_cont_meth + - host_age + - host_dry_mass + - host_height + - host_length + - host_tot_mass + - root_med_carbon + - root_med_macronutr + - root_med_micronutr + - depth + - season_temp + - season_precpt + - tot_org_carb + - tot_nitro_content + - conduc + - turbidity + - size_frac_low + - size_frac_up + - temp + - ventilation_type + - wind_direction + - genetic_mod + - host_phenotype + - ph + - ances_data + - biotic_regm + - chem_administration + - growth_habit + - host_disease_stat + - host_genotype + - host_taxid + - mechanical_damage + - perturbation + - root_cond + - root_med_ph + - tillage + - ph_meth + - growth_medium + - season + - food_product_type + - samp_type + - farm_water_source + - plant_water_method + - air_PM_concen + - animal_feed_equip + - animal_intrusion + - anim_water_method + - crop_yield + - cult_result + - cult_result_org + - cult_target + - plant_part_maturity + - adjacent_environment + - water_source_adjac + - farm_equip_shared + - farm_equip_san + - farm_equip_san_freq + - farm_equip + - fertilizer_admin + - fertilizer_date + - animal_group_size + - animal_diet + - food_contact_surf + - food_contain_wrap + - food_harvest_proc + - food_pack_medium + - food_preserv_proc + - food_prod_char + - prod_label_claims + - food_trav_mode + - food_trav_vehic + - food_source + - food_treat_proc + - extr_weather_event + - date_extr_weath + - host_subspecf_genlin + - intended_consumer + - library_prep_kit + - air_flow_impede + - lot_number + - season_humidity + - part_plant_animal + - plant_growth_med + - plant_reprod_crop + - samp_purpose + - repository_name + - samp_pooling + - samp_source_mat_cat + - sequencing_kit + - sequencing_location + - serovar_or_serotype + - soil_conductivity + - soil_cover + - soil_pH + - rel_location + - soil_porosity + - soil_temp + - soil_texture_class + - soil_texture_meth + - soil_type + - spikein_org + - spikein_serovar + - spikein_growth_med + - spikein_strain + - spikein_antibiotic + - spikein_metal + - timepoint + - water_frequency + - water_pH + - water_source_shared + - enrichment_protocol + - food_quality_date + - IFSAC_category + - animal_housing + - cult_isol_date + - food_clean_proc + - misc_param + slot_usage: + biotic_regm: + required: true + chem_administration: + required: true + crop_rotation: + string_serialization: '{boolean};{Rn/start_time/end_time/duration}' + depth: + examples: + - value: 10 meter + required: true + food_pack_medium: + examples: + - value: vacuum-packed [FOODON:03480027] + food_product_type: + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + examples: + - value: giant tiger prawn [FOODON:03412612] + host_age: + examples: + - value: 10 days + host_disease_stat: + examples: + - value: downy mildew + recommended: true + host_genotype: + examples: + - value: Ts + host_height: + examples: + - value: 1 meter + host_phenotype: + examples: + - value: seed pod; green [PATO:0000320] + host_taxid: + examples: + - value: '4530' + string_serialization: '{NCBI taxid}' + host_tot_mass: + examples: + - value: 2500 gram + humidity: + examples: + - value: 30% relative humidity + library_prep_kit: + examples: + - value: Illumina DNA Prep + organism_count: + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + plant_growth_med: + examples: + - value: soil + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + soil_conductivity: + description: Conductivity of soil at time of sampling. + soil_pH: + description: The pH of soil at time of sampling. + soil_type: + string_serialization: '{termLabel} [{termID}]' + water_pH: + description: pH measurement of the sample, or liquid portion of sample, or + aqueous phase of the fluid. + wind_direction: + examples: + - value: 0 degrees; Northwest + wind_speed: + examples: + - value: 1.6 kilometers per hour + class_uri: MIXS:0016020 + FoodFoodProductionFacility: + annotations: + use_cases: + tag: use_cases + value: Microbiome of food production facilities/factories + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from food production facilities. + title: food-food production facility + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, farm environment, and human foods) for capturing contextual + data across the food supply-chain environment. + aliases: + - MIxS-Food(food production facility) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - experimental_factor + - nucl_acid_ext + - organism_count + - samp_store_temp + - samp_store_dur + - air_temp + - room_dim + - freq_clean + - samp_room_id + - samp_vol_we_dna_ext + - pool_dna_extracts + - samp_store_loc + - surf_material + - indoor_surf + - avg_occup + - samp_floor + - genetic_mod + - coll_site_geo_feat + - samp_source_mat_cat + - samp_type + - samp_stor_media + - samp_stor_device + - food_product_type + - IFSAC_category + - food_product_qual + - food_contact_surf + - facility_type + - food_trav_mode + - food_trav_vehic + - samp_transport_dur + - samp_transport_temp + - samp_collect_method + - num_samp_collect + - lot_number + - hygienic_area + - env_monitoring_zone + - area_samp_size + - samp_surf_moisture + - samp_loc_condition + - biocide_used + - ster_meth_samp_room + - enrichment_protocol + - cult_target + - microb_cult_med + - timepoint + - bacterial_density + - cult_isol_date + - cult_result + - cult_result_org + - subspecf_gen_lin + - samp_pooling + - samp_purpose + - samp_rep_tech + - samp_rep_biol + - samp_transport_cont + - study_design + - nucl_acid_ext_kit + - library_prep_kit + - sequencing_kit + - sequencing_location + - study_inc_temp + - study_inc_dur + - study_timecourse + - study_tmnt + - food_source + - food_dis_point + - food_dis_point_city + - food_origin + - food_prod_synonym + - food_additive + - food_trace_list + - part_plant_animal + - food_ingredient + - spec_intended_cons + - HACCP_term + - dietary_claim_use + - food_allergen_label + - food_prod_char + - prod_label_claims + - food_name_status + - food_preserv_proc + - food_cooking_proc + - food_treat_proc + - food_contain_wrap + - food_pack_capacity + - food_pack_medium + - food_prior_contact + - food_prod + - food_quality_date + - repository_name + - intended_consumer + - food_pack_integrity + - misc_param + slot_usage: + air_temp: + examples: + - value: 4 degree Celsius + avg_occup: + examples: + - value: '6' + food_contact_surf: + required: true + food_pack_medium: + examples: + - value: vacuum-packed [FOODON:03480027] + food_product_qual: + required: true + food_product_type: + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + examples: + - value: giant tiger prawn [FOODON:03412612] + library_prep_kit: + examples: + - value: Illumina DNA Prep + organism_count: + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + pool_dna_extracts: + string_serialization: '{boolean},{integer}' + samp_collect_device: + examples: + - value: biopsy, niskin bottle, push core + samp_collect_method: + examples: + - value: environmental swab sampling + samp_source_mat_cat: + required: true + samp_stor_device: + required: true + samp_stor_media: + required: true + class_uri: MIXS:0016021 + FoodHumanFoods: + annotations: + use_cases: + tag: use_cases + value: Microbiome of foods intended for human consumption. + description: A collection of terms appropriate when collecting samples and performing + sequencing of samples obtained from human food products. + title: food-human foods + comments: + - This extension is intended to work alongside the other food extensions (animals + and animal feed, farm environment, and food production facilities) for capturing + contextual data across the food supply-chain environment. + aliases: + - MIxS-Food (human foods) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - seq_meth + - samp_size + - samp_collect_device + - experimental_factor + - nucl_acid_ext + - organism_count + - spikein_count + - samp_store_temp + - samp_store_dur + - samp_vol_we_dna_ext + - pool_dna_extracts + - temp + - samp_store_loc + - genetic_mod + - perturbation + - coll_site_geo_feat + - food_product_type + - IFSAC_category + - ferm_chem_add + - ferm_chem_add_perc + - ferm_headspace_oxy + - ferm_medium + - ferm_pH + - ferm_rel_humidity + - ferm_temp + - ferm_time + - ferm_vessel + - bacterial_density + - cons_food_stor_dur + - cons_food_stor_temp + - cons_purch_date + - cons_qty_purchased + - cult_isol_date + - cult_result + - cult_result_org + - cult_target + - dietary_claim_use + - enrichment_protocol + - food_additive + - food_allergen_label + - food_contact_surf + - food_contain_wrap + - food_cooking_proc + - food_dis_point + - food_ingredient + - food_name_status + - food_origin + - food_pack_capacity + - food_pack_integrity + - food_pack_medium + - food_preserv_proc + - food_prior_contact + - food_prod + - food_prod_synonym + - food_product_qual + - food_quality_date + - food_source + - food_trace_list + - food_trav_mode + - food_trav_vehic + - food_treat_proc + - HACCP_term + - intended_consumer + - library_prep_kit + - lot_number + - microb_cult_med + - microb_start + - microb_start_count + - microb_start_inoc + - microb_start_prep + - microb_start_source + - microb_start_taxID + - nucl_acid_ext_kit + - num_samp_collect + - part_plant_animal + - repository_name + - samp_collect_method + - samp_pooling + - samp_rep_biol + - samp_rep_tech + - samp_source_mat_cat + - samp_stor_device + - samp_stor_media + - samp_transport_cont + - samp_transport_dur + - samp_transport_temp + - samp_purpose + - sequencing_kit + - sequencing_location + - serovar_or_serotype + - spikein_AMR + - spikein_antibiotic + - spikein_growth_med + - spikein_metal + - spikein_org + - spikein_serovar + - spikein_strain + - study_design + - study_inc_dur + - study_inc_temp + - study_timecourse + - study_tmnt + - timepoint + - misc_param + slot_usage: + food_pack_medium: + examples: + - value: vacuum-packed[FOODON:03480027] + food_product_type: + examples: + - value: shrimp (peeled, deep-frozen) [FOODON:03317171] + required: true + food_source: + examples: + - value: giant tiger prawn [FOODON:03412612] + library_prep_kit: + examples: + - value: Illumina DNA Prep + organism_count: + examples: + - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR + pool_dna_extracts: + string_serialization: '{boolean},{integer}' + samp_collect_device: + examples: + - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] + samp_collect_method: + examples: + - value: environmental swab sampling + class_uri: MIXS:0016022 + HostAssociated: + annotations: + use_cases: + tag: use_cases + value: elephant fecal matter or cat oral cavity + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a non-human host, to examine the host-associated microbiome + or genome. + title: host-associated + comments: + - This is a very broad package, intended to capture many kinds of sequences + derived from the bodies of or derived from an organism. Where possible, please + use a more specific package. For example, consider using food-animal and + animal feed extension for sampling of farm animals reared for consumption. + For human stool microbiomes, consider MIxS-human-gut. Incidental associations + of environmental material with an organism may also be better served by other + packages. For example, nucleic acids derived from soil that was sampled from + the hoof of a cow may be better described by terms from the soil extension; + however, soil embedded in a wound on a cow’s leg would be best described + by terms in this extension + aliases: + - MIxS-host-associated + is_a: Extension + slots: + - samp_name + - project_name + - alt + - depth + - elev + - ances_data + - biol_stat + - genetic_mod + - host_common_name + - samp_capt_status + - samp_dis_stage + - host_taxid + - host_subject_id + - host_age + - host_life_stage + - host_sex + - host_disease_stat + - chem_administration + - host_body_habitat + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_length + - host_diet + - host_last_meal + - host_growth_cond + - host_substrate + - host_fam_rel + - host_subspecf_genlin + - host_genotype + - host_phenotype + - host_body_temp + - host_dry_mass + - blood_press_diast + - blood_press_syst + - host_color + - host_shape + - gravidity + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - samp_store_loc + - host_symbiont + - misc_param + slot_usage: + alt: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + host_age: + examples: + - value: 10 days + host_body_habitat: + examples: + - value: nasopharynx + host_body_site: + examples: + - value: gill [UBERON:0002535] + host_body_temp: + examples: + - value: 15 degree Celsius + host_common_name: + examples: + - value: human + host_diet: + examples: + - value: herbivore + host_disease_stat: + examples: + - value: rabies [DOID:11260] + host_fam_rel: + examples: + - value: offspring;Mussel25 + host_genotype: + examples: + - value: C57BL/6 + host_height: + examples: + - value: 0.1 meter + host_last_meal: + examples: + - value: corn feed;P2H + host_life_stage: + examples: + - value: adult + host_phenotype: + examples: + - value: elongated [PATO:0001154] + host_subject_id: + examples: + - value: MPI123 + host_symbiont: + examples: + - value: flukeworms + host_taxid: + examples: + - value: '7955' + string_serialization: '{NCBI taxid}' + host_tot_mass: + examples: + - value: 2500 gram + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016002 + HumanAssociated: + annotations: + use_cases: + tag: use_cases + value: blood samples or biopsy samples. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their human-associated microbiome + or genome, that does not have a specific extension (e.g., skin, gut, vaginal). + title: human-associated + comments: + - For stool samples use MIxS-human-gut extension. + aliases: + - MIxS-human-associated + is_a: Extension + slots: + - samp_name + - project_name + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - smoker + - host_hiv_stat + - drug_usage + - host_body_mass_index + - diet_last_six_month + - weight_loss_3_month + - ethnicity + - host_occupation + - pet_farm_animal + - travel_out_six_month + - twin_sibling + - medic_hist_perform + - study_complt_stat + - pulmonary_disord + - nose_throat_disord + - blood_blood_disord + - host_pulse + - gestation_state + - maternal_health_stat + - foetal_health_stat + - amniotic_fluid_color + - kidney_disord + - urogenit_tract_disor + - urine_collect_meth + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - host_symbiont + - samp_store_loc + - misc_param + slot_usage: + host_age: + examples: + - value: 30 years + host_body_site: + examples: + - value: Lung parenchyma [fma27360] + host_body_temp: + examples: + - value: 36.5 degree Celsius + host_diet: + examples: + - value: high-fat + host_disease_stat: + examples: + - value: measles [DOID:8622] + host_fam_rel: + examples: + - value: mother;ID298 + host_genotype: + examples: + - value: ST1 + host_height: + examples: + - value: 1.75 meter + host_last_meal: + examples: + - value: french fries;P5H30M + host_phenotype: + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + examples: + - value: MPI123 + host_symbiont: + examples: + - value: flukeworms + host_tot_mass: + examples: + - value: 65 kilogram + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016003 + HumanGut: + annotations: + use_cases: + tag: use_cases + value: human stool or fecal samples, or samples collected directly from the + gut. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their gut-associated microbiome. + title: human-gut + aliases: + - MIxS-human-gut + is_a: Extension + slots: + - samp_name + - project_name + - gastrointest_disord + - liver_disord + - special_diet + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_store_temp + - samp_vol_we_dna_ext + - samp_store_dur + - host_symbiont + - samp_store_loc + - misc_param + slot_usage: + host_age: + examples: + - value: 30 years + host_body_site: + examples: + - value: Wall of gut [fma45653] + host_body_temp: + examples: + - value: 36.5 degree Celsius + host_diet: + examples: + - value: high-fat + host_disease_stat: + examples: + - value: measles [DOID:8622] + host_fam_rel: + examples: + - value: mother;ID298 + host_genotype: + examples: + - value: ST1 + host_height: + examples: + - value: 1.75 meter + host_last_meal: + examples: + - value: french fries;P5H30M + host_phenotype: + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + examples: + - value: MPI123 + host_symbiont: + examples: + - value: flukeworms + host_tot_mass: + examples: + - value: 65 kilogram + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016004 + HumanOral: + annotations: + use_cases: + tag: use_cases + value: mouth swab sampling, dental microbiome samples, microbiome of oral + swabs, nasal, mouth, throat, teeth, tongue microbiome studies + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their oral-associated microbiome. + title: human-oral + aliases: + - MIxS-human-oral + is_a: Extension + slots: + - samp_name + - project_name + - nose_mouth_teeth_throat_disord + - time_last_toothbrush + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - host_symbiont + - samp_store_loc + - misc_param + slot_usage: + host_age: + examples: + - value: 30 years + host_body_site: + examples: + - value: Epithelium of tongue [fma284658] + host_body_temp: + examples: + - value: 36.5 degree Celsius + host_diet: + examples: + - value: high-fat + host_disease_stat: + examples: + - value: measles [DOID:8622] + host_fam_rel: + examples: + - value: mother;ID298 + host_genotype: + examples: + - value: ST1 + host_height: + examples: + - value: 1.75 meter + host_last_meal: + examples: + - value: french fries;P5H30M + host_phenotype: + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + examples: + - value: MPI123 + host_symbiont: + examples: + - value: flukeworms + host_tot_mass: + examples: + - value: 65 kilogram + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016005 + HumanSkin: + annotations: + use_cases: + tag: use_cases + value: swab samples taken on a person’s skin surface. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their skin-associated microbiome. + title: human-skin + aliases: + - MIxS-human-skin + is_a: Extension + slots: + - samp_name + - project_name + - dermatology_disord + - time_since_last_wash + - dominant_hand + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - samp_store_loc + - host_symbiont + - misc_param + slot_usage: + host_age: + examples: + - value: 30 years + host_body_site: + examples: + - value: Skin of palm of left hand [fma38303] + host_body_temp: + examples: + - value: 36.5 degree Celsius + host_diet: + examples: + - value: high-fat + host_disease_stat: + examples: + - value: measles [DOID:8622] + host_fam_rel: + examples: + - value: mother;ID298 + host_genotype: + examples: + - value: ST1 + host_height: + examples: + - value: 1.75 meter + host_last_meal: + examples: + - value: french fries;P5H30M + host_phenotype: + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + examples: + - value: MPI123 + host_symbiont: + examples: + - value: flukeworms + host_tot_mass: + examples: + - value: 65 kilogram + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016006 + HumanVaginal: + annotations: + use_cases: + tag: use_cases + value: vaginal swabbing + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a person to examine their vaginal-associated microbiome. + title: human-vaginal + aliases: + - MIxS-human-vaginal + is_a: Extension + slots: + - samp_name + - project_name + - menarche + - sexual_act + - pregnancy + - douche + - birth_control + - menopause + - hrt + - hysterectomy + - gynecologic_disord + - urogenit_disord + - host_subject_id + - host_age + - host_sex + - host_disease_stat + - ihmc_medication_code + - chem_administration + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_diet + - host_last_meal + - host_fam_rel + - host_genotype + - host_phenotype + - host_body_temp + - host_body_mass_index + - ethnicity + - host_occupation + - medic_hist_perform + - host_pulse + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_loc + - samp_store_dur + - host_symbiont + - misc_param + slot_usage: + host_age: + examples: + - value: 30 years + host_body_site: + examples: + - value: Ectocervix [fma86484] + host_body_temp: + examples: + - value: 36.5 degree Celsius + host_diet: + examples: + - value: high-fat + host_disease_stat: + examples: + - value: measles [DOID:8622] + host_fam_rel: + examples: + - value: mother;ID298 + host_genotype: + examples: + - value: ST1 + host_height: + examples: + - value: 1.75 meter + host_last_meal: + examples: + - value: french fries;P5H30M + host_phenotype: + examples: + - value: Tinnitus [HP:0000360] + host_subject_id: + examples: + - value: MPI123 + host_symbiont: + examples: + - value: flukeworms + host_tot_mass: + examples: + - value: 65 kilogram + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016007 + HydrocarbonResourcesCores: + annotations: + use_cases: + tag: use_cases + value: The microbial characterization of hydrocarbon occurrences, defined + as the natural and artificial environmental features that are rich in hydrocarbons, + from hydrocarbon rich formations, such as reservoir cores. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from environments pertaining to hydrocarbon resources, specifically + core samples. + title: hydrocarbon resources-cores + aliases: + - MIxS-HCR (hydrocarbon resources-cores) + is_a: Extension + slots: + - samp_name + - project_name + - hcr + - hc_produced + - basin + - field + - reservoir + - hcr_temp + - tvdss_of_hcr_temp + - hcr_pressure + - tvdss_of_hcr_press + - permeability + - porosity + - lithology + - depos_env + - hcr_geol_age + - owc_tvdss + - hcr_fw_salinity + - sulfate_fw + - vfa_fw + - sr_kerog_type + - sr_lithology + - sr_dep_env + - sr_geol_age + - samp_well_name + - win + - samp_type + - samp_subtype + - temp + - pressure + - samp_tvdss + - samp_md + - elev + - oxy_stat_samp + - samp_transport_cond + - samp_store_temp + - samp_store_dur + - samp_store_loc + - samp_vol_we_dna_ext + - organism_count + - org_count_qpcr_info + - ph + - salinity + - alkalinity + - alkalinity_method + - sulfate + - sulfide + - tot_sulfur + - nitrate + - nitrite + - ammonium + - tot_nitro + - diss_iron + - sodium + - chloride + - potassium + - magnesium + - calcium + - tot_iron + - diss_org_carb + - diss_inorg_carb + - diss_inorg_phosp + - tot_phosp + - suspend_solids + - density + - diss_carb_dioxide + - diss_oxygen_fluid + - vfa + - benzene + - toluene + - ethylbenzene + - xylene + - api + - tan + - viscosity + - pour_point + - saturates_pc + - aromatics_pc + - resins_pc + - asphaltenes_pc + - misc_param + - additional_info + slot_usage: + ammonium: + recommended: true + depos_env: + examples: + - value: Continental - Alluvial + diss_inorg_phosp: + recommended: true + hcr_temp: + required: true + nitrate: + recommended: true + nitrite: + recommended: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + recommended: true + ph: + recommended: true + samp_vol_we_dna_ext: + recommended: true + sulfate: + recommended: true + sulfate_fw: + required: true + sulfide: + recommended: true + temp: + required: true + vfa_fw: + required: true + class_uri: MIXS:0016015 + HydrocarbonResourcesFluidsSwabs: + annotations: + use_cases: + tag: use_cases + value: The microbial characterization of hydrocarbon occurrences, defined + as the natural and artificial environmental features that are rich in hydrocarbons, + from hydrocarbon resource fluids. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from environments pertaining to hydrocarbon resources, specifically + run-off liquids samples and swabs. + title: hydrocarbon resources-fluids/swabs + aliases: + - MIxS-HCR (hydrocarbon resources-fluids/swabs) + is_a: Extension + slots: + - samp_name + - project_name + - hcr + - hc_produced + - basin + - field + - reservoir + - hcr_temp + - tvdss_of_hcr_temp + - hcr_pressure + - tvdss_of_hcr_press + - lithology + - depos_env + - hcr_geol_age + - hcr_fw_salinity + - sulfate_fw + - vfa_fw + - prod_start_date + - prod_rate + - water_prod_rate + - water_cut + - iwf + - add_recov_method + - iw_bt_date_well + - biocide + - biocide_admin_method + - chem_treatment + - chem_treat_method + - samp_loc_corr_rate + - samp_well_name + - win + - samp_type + - samp_subtype + - samp_collect_point + - temp + - pressure + - oxy_stat_samp + - samp_preserv + - samp_transport_cond + - samp_store_temp + - samp_store_dur + - samp_store_loc + - samp_vol_we_dna_ext + - organism_count + - org_count_qpcr_info + - ph + - salinity + - alkalinity + - alkalinity_method + - sulfate + - sulfide + - tot_sulfur + - nitrate + - nitrite + - ammonium + - tot_nitro + - diss_iron + - sodium + - chloride + - potassium + - magnesium + - calcium + - tot_iron + - diss_org_carb + - diss_inorg_carb + - diss_inorg_phosp + - tot_phosp + - suspend_solids + - density + - diss_carb_dioxide + - diss_oxygen_fluid + - vfa + - benzene + - toluene + - ethylbenzene + - xylene + - api + - tan + - viscosity + - pour_point + - saturates_pc + - aromatics_pc + - resins_pc + - asphaltenes_pc + - misc_param + - additional_info + slot_usage: + ammonium: + recommended: true + depos_env: + examples: + - value: Marine - Reef + diss_inorg_phosp: + recommended: true + hcr_temp: + recommended: true + nitrate: + required: true + nitrite: + recommended: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + recommended: true + ph: + recommended: true + samp_vol_we_dna_ext: + recommended: true + sulfate: + required: true + sulfate_fw: + recommended: true + sulfide: + required: true + temp: + required: true + vfa_fw: + recommended: true + class_uri: MIXS:0016016 + MicrobialMatBiofilm: + annotations: + use_cases: + tag: use_cases + value: samples from microbial mats at cold seeps + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from biofilm environments including microbial mats. + title: microbial mat/biofilm + aliases: + - MIxS-microbial mat/biofilm + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - alkalinity + - alkyl_diethers + - aminopept_act + - ammonium + - bacteria_carb_prod + - biomass + - bishomohopanol + - bromide + - calcium + - carb_nitro_ratio + - chem_administration + - chloride + - chlorophyll + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_org_carb + - diss_org_nitro + - diss_oxygen + - glucosidase_act + - magnesium + - mean_frict_vel + - mean_peak_frict_vel + - methane + - misc_param + - n_alkanes + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - part_org_carb + - perturbation + - petroleum_hydrocarb + - phaeopigments + - phosphate + - phosplipid_fatt_acid + - potassium + - pressure + - redox_potential + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - silicate + - sodium + - sulfate + - sulfide + - temp + - tot_carb + - tot_nitro_content + - tot_org_carb + - turbidity + - water_content + slot_usage: + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + methane: + examples: + - value: 0.15 micromole per liter + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + water_content: + string_serialization: '{float} {unit}' + class_uri: MIXS:0016008 + MiscellaneousNaturalOrArtificialEnvironment: + description: A collection of generic terms appropriate when collecting and sequencing + samples obtained from environments, where there is no specific extension already + available. + title: miscellaneous natural or artificial environment + aliases: + - MIxS-miscellaneous natural or artificial environment + is_a: Extension + slots: + - samp_name + - project_name + - alt + - depth + - elev + - alkalinity + - ammonium + - biomass + - bromide + - calcium + - chem_administration + - chloride + - chlorophyll + - density + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_org_nitro + - diss_oxygen + - misc_param + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - perturbation + - phosphate + - phosplipid_fatt_acid + - potassium + - pressure + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - silicate + - sodium + - sulfate + - sulfide + - temp + - water_current + slot_usage: + alt: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016009 + PlantAssociated: + annotations: + use_cases: + tag: use_cases + value: plant surface swabs, root soil or rhizosphere, cultivated plants, + plant phenotyping + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from a plant to examine it’s plant-associated microbiome. + title: plant-associated + aliases: + - MIxS-plant-associated + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - air_temp_regm + - ances_data + - antibiotic_regm + - biol_stat + - biotic_regm + - chem_administration + - chem_mutagen + - climate_environment + - cult_root_med + - fertilizer_regm + - fungicide_regm + - gaseous_environment + - genetic_mod + - gravity + - growth_facil + - growth_habit + - growth_hormone_regm + - herbicide_regm + - host_age + - host_common_name + - host_disease_stat + - host_dry_mass + - host_genotype + - host_height + - host_subspecf_genlin + - host_length + - host_life_stage + - host_phenotype + - host_taxid + - host_tot_mass + - host_wet_mass + - humidity_regm + - light_regm + - mechanical_damage + - mineral_nutr_regm + - misc_param + - non_min_nutr_regm + - organism_count + - oxy_stat_samp + - ph_regm + - perturbation + - pesticide_regm + - plant_growth_med + - plant_product + - plant_sex + - plant_struc + - radiation_regm + - rainfall_regm + - root_cond + - root_med_carbon + - root_med_macronutr + - root_med_micronutr + - root_med_suppl + - root_med_ph + - root_med_regl + - root_med_solid + - salt_regm + - samp_capt_status + - samp_dis_stage + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - season_environment + - standing_water_regm + - temp + - tiss_cult_growth_med + - water_temp_regm + - watering_regm + - host_symbiont + slot_usage: + climate_environment: + string_serialization: '{text};{Rn/start_time/end_time/duration}' + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + fungicide_regm: + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + gaseous_environment: + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + herbicide_regm: + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + host_age: + examples: + - value: 10 days + host_common_name: + examples: + - value: rice + host_disease_stat: + examples: + - value: downy mildew + host_genotype: + examples: + - value: Ts + host_height: + examples: + - value: 1 meter + host_life_stage: + examples: + - value: adult + host_phenotype: + examples: + - value: seed pod; green [PATO:0000320] + host_symbiont: + examples: + - value: flukeworms + host_taxid: + examples: + - value: '4530' + string_serialization: '{NCBI taxid}' + host_tot_mass: + examples: + - value: 2500 gram + non_min_nutr_regm: + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + pesticide_regm: + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + ph_regm: + string_serialization: '{float};{Rn/start_time/end_time/duration}' + plant_growth_med: + examples: + - value: hydroponic plant culture media [EO:0007067] + salt_regm: + string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' + season_environment: + string_serialization: '{text};{Rn/start_time/end_time/duration}' + standing_water_regm: + string_serialization: '{text};{Rn/start_time/end_time/duration}' + water_temp_regm: + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + watering_regm: + string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' + class_uri: MIXS:0016010 + Sediment: + annotations: + use_cases: + tag: use_cases + value: river bed or sea floor. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from the sedimentary area of aquatic environments. + title: sediment + comments: + - Sedimentary layers in terrestrial environments will probably be better served + by the soil extension. + aliases: + - MIxS-sediment + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - alkalinity + - alkyl_diethers + - aminopept_act + - ammonium + - bacteria_carb_prod + - biomass + - bishomohopanol + - bromide + - calcium + - carb_nitro_ratio + - chem_administration + - chloride + - chlorophyll + - density + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_org_carb + - diss_org_nitro + - diss_oxygen + - glucosidase_act + - magnesium + - mean_frict_vel + - mean_peak_frict_vel + - methane + - misc_param + - n_alkanes + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - particle_class + - part_org_carb + - perturbation + - petroleum_hydrocarb + - phaeopigments + - phosphate + - phosplipid_fatt_acid + - porosity + - potassium + - pressure + - redox_potential + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - sediment_type + - silicate + - sodium + - sulfate + - sulfide + - temp + - tidal_stage + - tot_carb + - tot_depth_water_col + - tot_nitro_content + - tot_org_carb + - turbidity + - water_content + slot_usage: + depth: + examples: + - value: 10 meter + required: true + elev: + recommended: true + methane: + examples: + - value: 0.15 micromole per liter + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + water_content: + string_serialization: '{float} {unit}' + class_uri: MIXS:0016011 + Soil: + annotations: + use_cases: + tag: use_cases + value: soil collection, island microbiome sampling, farm land or forest floor. + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from the uppermost layer of Earth's crust, contributed by + the Terragenome Consortium. + title: soil + see_also: + - https://www.fao.org/agriculture/crops/thematic-sitemap/theme/spi/soil-biodiversity/research-into-soil-biodiversity/the-terragenome-project/en/ + aliases: + - MIxS-soil + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - cur_land_use + - cur_vegetation + - cur_vegetation_meth + - previous_land_use + - prev_land_use_meth + - crop_rotation + - agrochem_addition + - tillage + - fire + - flooding + - extreme_event + - soil_horizon + - horizon_meth + - sieving + - water_content + - water_cont_soil_meth + - samp_vol_we_dna_ext + - pool_dna_extracts + - store_cond + - link_climate_info + - annual_temp + - season_temp + - annual_precpt + - season_precpt + - link_class_info + - fao_class + - local_class + - local_class_meth + - org_nitro + - temp + - soil_type + - soil_type_meth + - slope_gradient + - slope_aspect + - profile_position + - drainage_class + - soil_texture + - soil_texture_meth + - ph + - ph_meth + - org_matter + - tot_org_carb + - tot_org_c_meth + - tot_nitro_content + - tot_nitro_cont_meth + - microbial_biomass + - micro_biomass_meth + - link_addit_analys + - heavy_metals + - heavy_metals_meth + - al_sat + - al_sat_meth + - misc_param + slot_usage: + crop_rotation: + string_serialization: '{boolean};{Rn/start_time/end_time/duration}' + depth: + examples: + - value: 10 meter + required: true + elev: + required: true + heavy_metals_meth: + string_serialization: '{PMID}|{DOI}|{URL}' + pool_dna_extracts: + string_serialization: '{boolean};{integer}' + soil_type: + string_serialization: '{termLabel} [{termID}]' + water_content: + string_serialization: '{float}' + class_uri: MIXS:0016012 + SymbiontAssociated: + annotations: + use_cases: + tag: use_cases + value: the microbiome sequence of a flea sampled from a farm animal + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from an organism that lives in close association with any + other organism(s). + title: symbiont-associated + aliases: + - MIxS-SA (symbiont-associated) + is_a: Extension + slots: + - samp_name + - project_name + - lat_lon + - geo_loc_name + - collection_date + - alt + - depth + - elev + - host_subject_id + - host_common_name + - host_taxid + - source_mat_id + - host_dependence + - type_of_symbiosis + - sym_life_cycle_type + - host_life_stage + - host_age + - urobiom_sex + - mode_transmission + - route_transmission + - host_body_habitat + - host_body_site + - host_body_product + - host_tot_mass + - host_height + - host_length + - host_growth_cond + - host_substrate + - host_fam_rel + - host_infra_spec_name + - host_infra_spec_rank + - host_genotype + - host_phenotype + - host_dry_mass + - host_color + - host_shape + - gravidity + - host_number + - host_symbiont + - host_specificity + - symbiont_host_role + - host_cellular_loc + - association_duration + - host_of_host_coinf + - host_of_host_name + - host_of_host_env_loc + - host_of_host_env_med + - host_of_host_taxid + - host_of_host_sub_id + - host_of_host_disease + - host_of_host_fam_rel + - host_of_host_infname + - host_of_host_infrank + - host_of_host_geno + - host_of_host_pheno + - host_of_host_gravid + - host_of_host_totmass + - chem_administration + - perturbation + - salinity + - oxy_stat_samp + - temp + - organism_count + - samp_vol_we_dna_ext + - samp_store_temp + - samp_store_dur + - samp_store_loc + - samp_store_sol + - misc_param + slot_usage: + alt: + recommended: true + depth: + examples: + - value: 10 meter + recommended: true + elev: + recommended: true + host_body_habitat: + examples: + - value: anterior end of a tapeworm + host_body_site: + examples: + - value: scolex [UBERON:0015119] + host_common_name: + examples: + - value: trematode + host_fam_rel: + examples: + - value: clone;P15 + host_life_stage: + examples: + - value: redia + required: true + host_phenotype: + examples: + - value: soldier + host_subject_id: + examples: + - value: P14 + host_symbiont: + examples: + - value: Paragordius varius + host_taxid: + examples: + - value: '395013' + string_serialization: '{integer}' + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016023 + WastewaterSludge: + annotations: + use_cases: + tag: use_cases + value: sewerage or industrial wastewater + description: A collection of terms appropriate when collecting samples and sequencing + samples obtained from any solid, semisolid or liquid waste. + title: wastewater/sludge + aliases: + - MIxS-wastewater/sludge + is_a: Extension + slots: + - samp_name + - project_name + - depth + - alkalinity + - biochem_oxygen_dem + - chem_administration + - chem_oxygen_dem + - efficiency_percent + - emulsions + - gaseous_substances + - indust_eff_percent + - inorg_particles + - misc_param + - nitrate + - org_particles + - organism_count + - oxy_stat_samp + - ph + - perturbation + - phosphate + - pre_treatment + - primary_treatment + - reactor_type + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - secondary_treatment + - sewage_type + - sludge_retent_time + - sodium + - soluble_inorg_mat + - soluble_org_mat + - suspend_solids + - temp + - tertiary_treatment + - tot_nitro + - tot_phosphate + - wastewater_type + slot_usage: + depth: + examples: + - value: 10 meter + recommended: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016013 + Water: + annotations: + use_cases: + tag: use_cases + value: sea or river water, global ocean sampling day + description: A collection of terms appropriate when collecting samples and sequencing + water samples obtained from any aquatic environment. + title: water + see_also: + - https://www.vliz.be/projects/assembleplus/research/ocean-sampling-day-2018.html + aliases: + - MIxS-water + is_a: Extension + slots: + - samp_name + - project_name + - depth + - elev + - alkalinity + - alkalinity_method + - alkyl_diethers + - aminopept_act + - ammonium + - atmospheric_data + - bacteria_carb_prod + - bac_prod + - bac_resp + - biomass + - bishomohopanol + - bromide + - calcium + - carb_nitro_ratio + - chem_administration + - chloride + - chlorophyll + - conduc + - density + - diether_lipids + - diss_carb_dioxide + - diss_hydrogen + - diss_inorg_carb + - diss_inorg_nitro + - diss_inorg_phosp + - diss_org_carb + - diss_org_nitro + - diss_oxygen + - down_par + - fluor + - glucosidase_act + - light_intensity + - magnesium + - mean_frict_vel + - mean_peak_frict_vel + - misc_param + - n_alkanes + - nitrate + - nitrite + - nitro + - org_carb + - org_matter + - org_nitro + - organism_count + - oxy_stat_samp + - ph + - part_org_carb + - part_org_nitro + - perturbation + - petroleum_hydrocarb + - phaeopigments + - phosphate + - phosplipid_fatt_acid + - photon_flux + - potassium + - pressure + - primary_prod + - redox_potential + - salinity + - samp_store_dur + - samp_store_loc + - samp_store_temp + - samp_vol_we_dna_ext + - silicate + - size_frac_low + - size_frac_up + - sodium + - soluble_react_phosp + - sulfate + - sulfide + - suspend_part_matter + - temp + - tidal_stage + - tot_depth_water_col + - tot_diss_nitro + - tot_inorg_nitro + - tot_nitro + - tot_part_carb + - tot_phosp + - turbidity + - water_current + slot_usage: + depth: + examples: + - value: 10 meter + required: true + elev: + recommended: true + organism_count: + examples: + - value: total prokaryotes;3.5e7 cells per milliliter;qPCR + class_uri: MIXS:0016014 + Checklist: + description: A collection of metadata terms (slots) to minimally describe the + sampling and sequencing method of a specimen used to generate a nucleotide + sequence. + Extension: + description: A collection of recommended metadata terms (slots) developed by + community experts, describing the specific context under which a sample was + collected. + aliases: + - EnvironmentalPackage + MixsCompliantData: + description: A collection of Data that comply with some combination of a MIxS + checklist and environmental extension + title: MIxS compliant data + slots: + - migs_ba_data + - agriculture_data + - migs_ba_agriculture_data + - air_data + - migs_ba_air_data + - built_environment_data + - migs_ba_built_environment_data + - food_animal_and_animal_feed_data + - migs_ba_food_animal_and_animal_feed_data + - food_farm_environment_data + - migs_ba_food_farm_environment_data + - food_food_production_facility_data + - migs_ba_food_food_production_facility_data + - food_human_foods_data + - migs_ba_food_human_foods_data + - host_associated_data + - migs_ba_host_associated_data + - human_associated_data + - migs_ba_human_associated_data + - human_gut_data + - migs_ba_human_gut_data + - human_oral_data + - migs_ba_human_oral_data + - human_skin_data + - migs_ba_human_skin_data + - human_vaginal_data + - migs_ba_human_vaginal_data + - hydrocarbon_resources_cores_data + - migs_ba_hydrocarbon_resources_cores_data + - hydrocarbon_resources_fluids_swabs_data + - migs_ba_hydrocarbon_resources_fluids_swabs_data + - microbial_mat_biofilm_data + - migs_ba_microbial_mat_biofilm_data + - miscellaneous_natural_or_artificial_environment_data + - migs_ba_miscellaneous_natural_or_artificial_environment_data + - plant_associated_data + - migs_ba_plant_associated_data + - sediment_data + - migs_ba_sediment_data + - soil_data + - migs_ba_soil_data + - symbiont_associated_data + - migs_ba_symbiont_associated_data + - wastewater_sludge_data + - migs_ba_wastewater_sludge_data + - water_data + - migs_ba_water_data + - migs_eu_data + - migs_eu_agriculture_data + - migs_eu_air_data + - migs_eu_built_environment_data + - migs_eu_food_animal_and_animal_feed_data + - migs_eu_food_farm_environment_data + - migs_eu_food_food_production_facility_data + - migs_eu_food_human_foods_data + - migs_eu_host_associated_data + - migs_eu_human_associated_data + - migs_eu_human_gut_data + - migs_eu_human_oral_data + - migs_eu_human_skin_data + - migs_eu_human_vaginal_data + - migs_eu_hydrocarbon_resources_cores_data + - migs_eu_hydrocarbon_resources_fluids_swabs_data + - migs_eu_microbial_mat_biofilm_data + - migs_eu_miscellaneous_natural_or_artificial_environment_data + - migs_eu_plant_associated_data + - migs_eu_sediment_data + - migs_eu_soil_data + - migs_eu_symbiont_associated_data + - migs_eu_wastewater_sludge_data + - migs_eu_water_data + - migs_org_data + - migs_org_agriculture_data + - migs_org_air_data + - migs_org_built_environment_data + - migs_org_food_animal_and_animal_feed_data + - migs_org_food_farm_environment_data + - migs_org_food_food_production_facility_data + - migs_org_food_human_foods_data + - migs_org_host_associated_data + - migs_org_human_associated_data + - migs_org_human_gut_data + - migs_org_human_oral_data + - migs_org_human_skin_data + - migs_org_human_vaginal_data + - migs_org_hydrocarbon_resources_cores_data + - migs_org_hydrocarbon_resources_fluids_swabs_data + - migs_org_microbial_mat_biofilm_data + - migs_org_miscellaneous_natural_or_artificial_environment_data + - migs_org_plant_associated_data + - migs_org_sediment_data + - migs_org_soil_data + - migs_org_symbiont_associated_data + - migs_org_wastewater_sludge_data + - migs_org_water_data + - migs_pl_data + - migs_pl_agriculture_data + - migs_pl_air_data + - migs_pl_built_environment_data + - migs_pl_food_animal_and_animal_feed_data + - migs_pl_food_farm_environment_data + - migs_pl_food_food_production_facility_data + - migs_pl_food_human_foods_data + - migs_pl_host_associated_data + - migs_pl_human_associated_data + - migs_pl_human_gut_data + - migs_pl_human_oral_data + - migs_pl_human_skin_data + - migs_pl_human_vaginal_data + - migs_pl_hydrocarbon_resources_cores_data + - migs_pl_hydrocarbon_resources_fluids_swabs_data + - migs_pl_microbial_mat_biofilm_data + - migs_pl_miscellaneous_natural_or_artificial_environment_data + - migs_pl_plant_associated_data + - migs_pl_sediment_data + - migs_pl_soil_data + - migs_pl_symbiont_associated_data + - migs_pl_wastewater_sludge_data + - migs_pl_water_data + - migs_vi_data + - migs_vi_agriculture_data + - migs_vi_air_data + - migs_vi_built_environment_data + - migs_vi_food_animal_and_animal_feed_data + - migs_vi_food_farm_environment_data + - migs_vi_food_food_production_facility_data + - migs_vi_food_human_foods_data + - migs_vi_host_associated_data + - migs_vi_human_associated_data + - migs_vi_human_gut_data + - migs_vi_human_oral_data + - migs_vi_human_skin_data + - migs_vi_human_vaginal_data + - migs_vi_hydrocarbon_resources_cores_data + - migs_vi_hydrocarbon_resources_fluids_swabs_data + - migs_vi_microbial_mat_biofilm_data + - migs_vi_miscellaneous_natural_or_artificial_environment_data + - migs_vi_plant_associated_data + - migs_vi_sediment_data + - migs_vi_soil_data + - migs_vi_symbiont_associated_data + - migs_vi_wastewater_sludge_data + - migs_vi_water_data + - mimag_data + - mimag_agriculture_data + - mimag_air_data + - mimag_built_environment_data + - mimag_food_animal_and_animal_feed_data + - mimag_food_farm_environment_data + - mimag_food_food_production_facility_data + - mimag_food_human_foods_data + - mimag_host_associated_data + - mimag_human_associated_data + - mimag_human_gut_data + - mimag_human_oral_data + - mimag_human_skin_data + - mimag_human_vaginal_data + - mimag_hydrocarbon_resources_cores_data + - mimag_hydrocarbon_resources_fluids_swabs_data + - mimag_microbial_mat_biofilm_data + - mimag_miscellaneous_natural_or_artificial_environment_data + - mimag_plant_associated_data + - mimag_sediment_data + - mimag_soil_data + - mimag_symbiont_associated_data + - mimag_wastewater_sludge_data + - mimag_water_data + - mimarks_c_data + - mimarks_c_agriculture_data + - mimarks_c_air_data + - mimarks_c_built_environment_data + - mimarks_c_food_animal_and_animal_feed_data + - mimarks_c_food_farm_environment_data + - mimarks_c_food_food_production_facility_data + - mimarks_c_food_human_foods_data + - mimarks_c_host_associated_data + - mimarks_c_human_associated_data + - mimarks_c_human_gut_data + - mimarks_c_human_oral_data + - mimarks_c_human_skin_data + - mimarks_c_human_vaginal_data + - mimarks_c_hydrocarbon_resources_cores_data + - mimarks_c_hydrocarbon_resources_fluids_swabs_data + - mimarks_c_microbial_mat_biofilm_data + - mimarks_c_miscellaneous_natural_or_artificial_environment_data + - mimarks_c_plant_associated_data + - mimarks_c_sediment_data + - mimarks_c_soil_data + - mimarks_c_symbiont_associated_data + - mimarks_c_wastewater_sludge_data + - mimarks_c_water_data + - mimarks_s_data + - mimarks_s_agriculture_data + - mimarks_s_air_data + - mimarks_s_built_environment_data + - mimarks_s_food_animal_and_animal_feed_data + - mimarks_s_food_farm_environment_data + - mimarks_s_food_food_production_facility_data + - mimarks_s_food_human_foods_data + - mimarks_s_host_associated_data + - mimarks_s_human_associated_data + - mimarks_s_human_gut_data + - mimarks_s_human_oral_data + - mimarks_s_human_skin_data + - mimarks_s_human_vaginal_data + - mimarks_s_hydrocarbon_resources_cores_data + - mimarks_s_hydrocarbon_resources_fluids_swabs_data + - mimarks_s_microbial_mat_biofilm_data + - mimarks_s_miscellaneous_natural_or_artificial_environment_data + - mimarks_s_plant_associated_data + - mimarks_s_sediment_data + - mimarks_s_soil_data + - mimarks_s_symbiont_associated_data + - mimarks_s_wastewater_sludge_data + - mimarks_s_water_data + - mims_data + - mims_agriculture_data + - mims_air_data + - mims_built_environment_data + - mims_food_animal_and_animal_feed_data + - mims_food_farm_environment_data + - mims_food_food_production_facility_data + - mims_food_human_foods_data + - mims_host_associated_data + - mims_human_associated_data + - mims_human_gut_data + - mims_human_oral_data + - mims_human_skin_data + - mims_human_vaginal_data + - mims_hydrocarbon_resources_cores_data + - mims_hydrocarbon_resources_fluids_swabs_data + - mims_microbial_mat_biofilm_data + - mims_miscellaneous_natural_or_artificial_environment_data + - mims_plant_associated_data + - mims_sediment_data + - mims_soil_data + - mims_symbiont_associated_data + - mims_wastewater_sludge_data + - mims_water_data + - misag_data + - misag_agriculture_data + - misag_air_data + - misag_built_environment_data + - misag_food_animal_and_animal_feed_data + - misag_food_farm_environment_data + - misag_food_food_production_facility_data + - misag_food_human_foods_data + - misag_host_associated_data + - misag_human_associated_data + - misag_human_gut_data + - misag_human_oral_data + - misag_human_skin_data + - misag_human_vaginal_data + - misag_hydrocarbon_resources_cores_data + - misag_hydrocarbon_resources_fluids_swabs_data + - misag_microbial_mat_biofilm_data + - misag_miscellaneous_natural_or_artificial_environment_data + - misag_plant_associated_data + - misag_sediment_data + - misag_soil_data + - misag_symbiont_associated_data + - misag_wastewater_sludge_data + - misag_water_data + - miuvig_data + - miuvig_agriculture_data + - miuvig_air_data + - miuvig_built_environment_data + - miuvig_food_animal_and_animal_feed_data + - miuvig_food_farm_environment_data + - miuvig_food_food_production_facility_data + - miuvig_food_human_foods_data + - miuvig_host_associated_data + - miuvig_human_associated_data + - miuvig_human_gut_data + - miuvig_human_oral_data + - miuvig_human_skin_data + - miuvig_human_vaginal_data + - miuvig_hydrocarbon_resources_cores_data + - miuvig_hydrocarbon_resources_fluids_swabs_data + - miuvig_microbial_mat_biofilm_data + - miuvig_miscellaneous_natural_or_artificial_environment_data + - miuvig_plant_associated_data + - miuvig_sediment_data + - miuvig_soil_data + - miuvig_symbiont_associated_data + - miuvig_wastewater_sludge_data + - miuvig_water_data + tree_root: true + MigsBaAgriculture: + description: MIxS Data that comply with the MigsBa checklist and the Agriculture + Extension + title: MigsBa combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MigsBa + class_uri: MIXS:0010003_0016018 + MigsBaAir: + description: MIxS Data that comply with the MigsBa checklist and the Air Extension + title: MigsBa combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MigsBa + class_uri: MIXS:0010003_0016000 + MigsBaBuiltEnvironment: + description: MIxS Data that comply with the MigsBa checklist and the BuiltEnvironment + Extension + title: MigsBa combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016001 + MigsBaFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MigsBa checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsBa combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsBa + class_uri: MIXS:0010003_0016019 + MigsBaFoodFarmEnvironment: + description: MIxS Data that comply with the MigsBa checklist and the FoodFarmEnvironment + Extension + title: MigsBa combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016020 + MigsBaFoodFoodProductionFacility: + description: MIxS Data that comply with the MigsBa checklist and the FoodFoodProductionFacility + Extension + title: MigsBa combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MigsBa + class_uri: MIXS:0010003_0016021 + MigsBaFoodHumanFoods: + description: MIxS Data that comply with the MigsBa checklist and the FoodHumanFoods + Extension + title: MigsBa combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MigsBa + class_uri: MIXS:0010003_0016022 + MigsBaHostAssociated: + description: MIxS Data that comply with the MigsBa checklist and the HostAssociated + Extension + title: MigsBa combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016002 + MigsBaHumanAssociated: + description: MIxS Data that comply with the MigsBa checklist and the HumanAssociated + Extension + title: MigsBa combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016003 + MigsBaHumanGut: + description: MIxS Data that comply with the MigsBa checklist and the HumanGut + Extension + title: MigsBa combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MigsBa + class_uri: MIXS:0010003_0016004 + MigsBaHumanOral: + description: MIxS Data that comply with the MigsBa checklist and the HumanOral + Extension + title: MigsBa combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MigsBa + class_uri: MIXS:0010003_0016005 + MigsBaHumanSkin: + description: MIxS Data that comply with the MigsBa checklist and the HumanSkin + Extension + title: MigsBa combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MigsBa + class_uri: MIXS:0010003_0016006 + MigsBaHumanVaginal: + description: MIxS Data that comply with the MigsBa checklist and the HumanVaginal + Extension + title: MigsBa combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MigsBa + class_uri: MIXS:0010003_0016007 + MigsBaHydrocarbonResourcesCores: + description: MIxS Data that comply with the MigsBa checklist and the HydrocarbonResourcesCores + Extension + title: MigsBa combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MigsBa + class_uri: MIXS:0010003_0016015 + MigsBaHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MigsBa checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsBa combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsBa + class_uri: MIXS:0010003_0016016 + MigsBaMicrobialMatBiofilm: + description: MIxS Data that comply with the MigsBa checklist and the MicrobialMatBiofilm + Extension + title: MigsBa combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MigsBa + class_uri: MIXS:0010003_0016008 + MigsBaMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MigsBa checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016009 + MigsBaPlantAssociated: + description: MIxS Data that comply with the MigsBa checklist and the PlantAssociated + Extension + title: MigsBa combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016010 + MigsBaSediment: + description: MIxS Data that comply with the MigsBa checklist and the Sediment + Extension + title: MigsBa combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MigsBa + class_uri: MIXS:0010003_0016011 + MigsBaSoil: + description: MIxS Data that comply with the MigsBa checklist and the Soil Extension + title: MigsBa combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MigsBa + class_uri: MIXS:0010003_0016012 + MigsBaSymbiontAssociated: + description: MIxS Data that comply with the MigsBa checklist and the SymbiontAssociated + Extension + title: MigsBa combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MigsBa + class_uri: MIXS:0010003_0016023 + MigsBaWastewaterSludge: + description: MIxS Data that comply with the MigsBa checklist and the WastewaterSludge + Extension + title: MigsBa combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MigsBa + class_uri: MIXS:0010003_0016013 + MigsBaWater: + description: MIxS Data that comply with the MigsBa checklist and the Water Extension + title: MigsBa combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MigsBa + class_uri: MIXS:0010003_0016014 + MigsEuAgriculture: + description: MIxS Data that comply with the MigsEu checklist and the Agriculture + Extension + title: MigsEu combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MigsEu + class_uri: MIXS:0010002_0016018 + MigsEuAir: + description: MIxS Data that comply with the MigsEu checklist and the Air Extension + title: MigsEu combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MigsEu + class_uri: MIXS:0010002_0016000 + MigsEuBuiltEnvironment: + description: MIxS Data that comply with the MigsEu checklist and the BuiltEnvironment + Extension + title: MigsEu combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016001 + MigsEuFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MigsEu checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsEu combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsEu + class_uri: MIXS:0010002_0016019 + MigsEuFoodFarmEnvironment: + description: MIxS Data that comply with the MigsEu checklist and the FoodFarmEnvironment + Extension + title: MigsEu combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016020 + MigsEuFoodFoodProductionFacility: + description: MIxS Data that comply with the MigsEu checklist and the FoodFoodProductionFacility + Extension + title: MigsEu combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MigsEu + class_uri: MIXS:0010002_0016021 + MigsEuFoodHumanFoods: + description: MIxS Data that comply with the MigsEu checklist and the FoodHumanFoods + Extension + title: MigsEu combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MigsEu + class_uri: MIXS:0010002_0016022 + MigsEuHostAssociated: + description: MIxS Data that comply with the MigsEu checklist and the HostAssociated + Extension + title: MigsEu combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016002 + MigsEuHumanAssociated: + description: MIxS Data that comply with the MigsEu checklist and the HumanAssociated + Extension + title: MigsEu combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016003 + MigsEuHumanGut: + description: MIxS Data that comply with the MigsEu checklist and the HumanGut + Extension + title: MigsEu combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MigsEu + class_uri: MIXS:0010002_0016004 + MigsEuHumanOral: + description: MIxS Data that comply with the MigsEu checklist and the HumanOral + Extension + title: MigsEu combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MigsEu + class_uri: MIXS:0010002_0016005 + MigsEuHumanSkin: + description: MIxS Data that comply with the MigsEu checklist and the HumanSkin + Extension + title: MigsEu combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MigsEu + class_uri: MIXS:0010002_0016006 + MigsEuHumanVaginal: + description: MIxS Data that comply with the MigsEu checklist and the HumanVaginal + Extension + title: MigsEu combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MigsEu + class_uri: MIXS:0010002_0016007 + MigsEuHydrocarbonResourcesCores: + description: MIxS Data that comply with the MigsEu checklist and the HydrocarbonResourcesCores + Extension + title: MigsEu combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MigsEu + class_uri: MIXS:0010002_0016015 + MigsEuHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MigsEu checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsEu combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsEu + class_uri: MIXS:0010002_0016016 + MigsEuMicrobialMatBiofilm: + description: MIxS Data that comply with the MigsEu checklist and the MicrobialMatBiofilm + Extension + title: MigsEu combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MigsEu + class_uri: MIXS:0010002_0016008 + MigsEuMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MigsEu checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016009 + MigsEuPlantAssociated: + description: MIxS Data that comply with the MigsEu checklist and the PlantAssociated + Extension + title: MigsEu combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016010 + MigsEuSediment: + description: MIxS Data that comply with the MigsEu checklist and the Sediment + Extension + title: MigsEu combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MigsEu + class_uri: MIXS:0010002_0016011 + MigsEuSoil: + description: MIxS Data that comply with the MigsEu checklist and the Soil Extension + title: MigsEu combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MigsEu + class_uri: MIXS:0010002_0016012 + MigsEuSymbiontAssociated: + description: MIxS Data that comply with the MigsEu checklist and the SymbiontAssociated + Extension + title: MigsEu combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MigsEu + class_uri: MIXS:0010002_0016023 + MigsEuWastewaterSludge: + description: MIxS Data that comply with the MigsEu checklist and the WastewaterSludge + Extension + title: MigsEu combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MigsEu + class_uri: MIXS:0010002_0016013 + MigsEuWater: + description: MIxS Data that comply with the MigsEu checklist and the Water Extension + title: MigsEu combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MigsEu + class_uri: MIXS:0010002_0016014 + MigsOrgAgriculture: + description: MIxS Data that comply with the MigsOrg checklist and the Agriculture + Extension + title: MigsOrg combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016018 + MigsOrgAir: + description: MIxS Data that comply with the MigsOrg checklist and the Air Extension + title: MigsOrg combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016000 + MigsOrgBuiltEnvironment: + description: MIxS Data that comply with the MigsOrg checklist and the BuiltEnvironment + Extension + title: MigsOrg combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016001 + MigsOrgFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MigsOrg checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsOrg combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016019 + MigsOrgFoodFarmEnvironment: + description: MIxS Data that comply with the MigsOrg checklist and the FoodFarmEnvironment + Extension + title: MigsOrg combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016020 + MigsOrgFoodFoodProductionFacility: + description: MIxS Data that comply with the MigsOrg checklist and the FoodFoodProductionFacility + Extension + title: MigsOrg combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016021 + MigsOrgFoodHumanFoods: + description: MIxS Data that comply with the MigsOrg checklist and the FoodHumanFoods + Extension + title: MigsOrg combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016022 + MigsOrgHostAssociated: + description: MIxS Data that comply with the MigsOrg checklist and the HostAssociated + Extension + title: MigsOrg combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016002 + MigsOrgHumanAssociated: + description: MIxS Data that comply with the MigsOrg checklist and the HumanAssociated + Extension + title: MigsOrg combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016003 + MigsOrgHumanGut: + description: MIxS Data that comply with the MigsOrg checklist and the HumanGut + Extension + title: MigsOrg combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016004 + MigsOrgHumanOral: + description: MIxS Data that comply with the MigsOrg checklist and the HumanOral + Extension + title: MigsOrg combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016005 + MigsOrgHumanSkin: + description: MIxS Data that comply with the MigsOrg checklist and the HumanSkin + Extension + title: MigsOrg combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016006 + MigsOrgHumanVaginal: + description: MIxS Data that comply with the MigsOrg checklist and the HumanVaginal + Extension + title: MigsOrg combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016007 + MigsOrgHydrocarbonResourcesCores: + description: MIxS Data that comply with the MigsOrg checklist and the HydrocarbonResourcesCores + Extension + title: MigsOrg combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016015 + MigsOrgHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MigsOrg checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsOrg combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016016 + MigsOrgMicrobialMatBiofilm: + description: MIxS Data that comply with the MigsOrg checklist and the MicrobialMatBiofilm + Extension + title: MigsOrg combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016008 + MigsOrgMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MigsOrg checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016009 + MigsOrgPlantAssociated: + description: MIxS Data that comply with the MigsOrg checklist and the PlantAssociated + Extension + title: MigsOrg combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016010 + MigsOrgSediment: + description: MIxS Data that comply with the MigsOrg checklist and the Sediment + Extension + title: MigsOrg combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016011 + MigsOrgSoil: + description: MIxS Data that comply with the MigsOrg checklist and the Soil Extension + title: MigsOrg combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016012 + MigsOrgSymbiontAssociated: + description: MIxS Data that comply with the MigsOrg checklist and the SymbiontAssociated + Extension + title: MigsOrg combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016023 + MigsOrgWastewaterSludge: + description: MIxS Data that comply with the MigsOrg checklist and the WastewaterSludge + Extension + title: MigsOrg combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016013 + MigsOrgWater: + description: MIxS Data that comply with the MigsOrg checklist and the Water Extension + title: MigsOrg combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MigsOrg + class_uri: MIXS:0010006_0016014 + MigsPlAgriculture: + description: MIxS Data that comply with the MigsPl checklist and the Agriculture + Extension + title: MigsPl combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MigsPl + class_uri: MIXS:0010004_0016018 + MigsPlAir: + description: MIxS Data that comply with the MigsPl checklist and the Air Extension + title: MigsPl combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MigsPl + class_uri: MIXS:0010004_0016000 + MigsPlBuiltEnvironment: + description: MIxS Data that comply with the MigsPl checklist and the BuiltEnvironment + Extension + title: MigsPl combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016001 + MigsPlFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MigsPl checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsPl combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsPl + class_uri: MIXS:0010004_0016019 + MigsPlFoodFarmEnvironment: + description: MIxS Data that comply with the MigsPl checklist and the FoodFarmEnvironment + Extension + title: MigsPl combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016020 + MigsPlFoodFoodProductionFacility: + description: MIxS Data that comply with the MigsPl checklist and the FoodFoodProductionFacility + Extension + title: MigsPl combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MigsPl + class_uri: MIXS:0010004_0016021 + MigsPlFoodHumanFoods: + description: MIxS Data that comply with the MigsPl checklist and the FoodHumanFoods + Extension + title: MigsPl combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MigsPl + class_uri: MIXS:0010004_0016022 + MigsPlHostAssociated: + description: MIxS Data that comply with the MigsPl checklist and the HostAssociated + Extension + title: MigsPl combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016002 + MigsPlHumanAssociated: + description: MIxS Data that comply with the MigsPl checklist and the HumanAssociated + Extension + title: MigsPl combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016003 + MigsPlHumanGut: + description: MIxS Data that comply with the MigsPl checklist and the HumanGut + Extension + title: MigsPl combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MigsPl + class_uri: MIXS:0010004_0016004 + MigsPlHumanOral: + description: MIxS Data that comply with the MigsPl checklist and the HumanOral + Extension + title: MigsPl combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MigsPl + class_uri: MIXS:0010004_0016005 + MigsPlHumanSkin: + description: MIxS Data that comply with the MigsPl checklist and the HumanSkin + Extension + title: MigsPl combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MigsPl + class_uri: MIXS:0010004_0016006 + MigsPlHumanVaginal: + description: MIxS Data that comply with the MigsPl checklist and the HumanVaginal + Extension + title: MigsPl combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MigsPl + class_uri: MIXS:0010004_0016007 + MigsPlHydrocarbonResourcesCores: + description: MIxS Data that comply with the MigsPl checklist and the HydrocarbonResourcesCores + Extension + title: MigsPl combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MigsPl + class_uri: MIXS:0010004_0016015 + MigsPlHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MigsPl checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsPl combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsPl + class_uri: MIXS:0010004_0016016 + MigsPlMicrobialMatBiofilm: + description: MIxS Data that comply with the MigsPl checklist and the MicrobialMatBiofilm + Extension + title: MigsPl combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MigsPl + class_uri: MIXS:0010004_0016008 + MigsPlMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MigsPl checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016009 + MigsPlPlantAssociated: + description: MIxS Data that comply with the MigsPl checklist and the PlantAssociated + Extension + title: MigsPl combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016010 + MigsPlSediment: + description: MIxS Data that comply with the MigsPl checklist and the Sediment + Extension + title: MigsPl combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MigsPl + class_uri: MIXS:0010004_0016011 + MigsPlSoil: + description: MIxS Data that comply with the MigsPl checklist and the Soil Extension + title: MigsPl combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MigsPl + class_uri: MIXS:0010004_0016012 + MigsPlSymbiontAssociated: + description: MIxS Data that comply with the MigsPl checklist and the SymbiontAssociated + Extension + title: MigsPl combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MigsPl + class_uri: MIXS:0010004_0016023 + MigsPlWastewaterSludge: + description: MIxS Data that comply with the MigsPl checklist and the WastewaterSludge + Extension + title: MigsPl combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MigsPl + class_uri: MIXS:0010004_0016013 + MigsPlWater: + description: MIxS Data that comply with the MigsPl checklist and the Water Extension + title: MigsPl combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MigsPl + class_uri: MIXS:0010004_0016014 + MigsViAgriculture: + description: MIxS Data that comply with the MigsVi checklist and the Agriculture + Extension + title: MigsVi combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MigsVi + class_uri: MIXS:0010005_0016018 + MigsViAir: + description: MIxS Data that comply with the MigsVi checklist and the Air Extension + title: MigsVi combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MigsVi + class_uri: MIXS:0010005_0016000 + MigsViBuiltEnvironment: + description: MIxS Data that comply with the MigsVi checklist and the BuiltEnvironment + Extension + title: MigsVi combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016001 + MigsViFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MigsVi checklist and the FoodAnimalAndAnimalFeed + Extension + title: MigsVi combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MigsVi + class_uri: MIXS:0010005_0016019 + MigsViFoodFarmEnvironment: + description: MIxS Data that comply with the MigsVi checklist and the FoodFarmEnvironment + Extension + title: MigsVi combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016020 + MigsViFoodFoodProductionFacility: + description: MIxS Data that comply with the MigsVi checklist and the FoodFoodProductionFacility + Extension + title: MigsVi combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MigsVi + class_uri: MIXS:0010005_0016021 + MigsViFoodHumanFoods: + description: MIxS Data that comply with the MigsVi checklist and the FoodHumanFoods + Extension + title: MigsVi combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MigsVi + class_uri: MIXS:0010005_0016022 + MigsViHostAssociated: + description: MIxS Data that comply with the MigsVi checklist and the HostAssociated + Extension + title: MigsVi combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016002 + MigsViHumanAssociated: + description: MIxS Data that comply with the MigsVi checklist and the HumanAssociated + Extension + title: MigsVi combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016003 + MigsViHumanGut: + description: MIxS Data that comply with the MigsVi checklist and the HumanGut + Extension + title: MigsVi combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MigsVi + class_uri: MIXS:0010005_0016004 + MigsViHumanOral: + description: MIxS Data that comply with the MigsVi checklist and the HumanOral + Extension + title: MigsVi combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MigsVi + class_uri: MIXS:0010005_0016005 + MigsViHumanSkin: + description: MIxS Data that comply with the MigsVi checklist and the HumanSkin + Extension + title: MigsVi combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MigsVi + class_uri: MIXS:0010005_0016006 + MigsViHumanVaginal: + description: MIxS Data that comply with the MigsVi checklist and the HumanVaginal + Extension + title: MigsVi combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MigsVi + class_uri: MIXS:0010005_0016007 + MigsViHydrocarbonResourcesCores: + description: MIxS Data that comply with the MigsVi checklist and the HydrocarbonResourcesCores + Extension + title: MigsVi combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MigsVi + class_uri: MIXS:0010005_0016015 + MigsViHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MigsVi checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MigsVi combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MigsVi + class_uri: MIXS:0010005_0016016 + MigsViMicrobialMatBiofilm: + description: MIxS Data that comply with the MigsVi checklist and the MicrobialMatBiofilm + Extension + title: MigsVi combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MigsVi + class_uri: MIXS:0010005_0016008 + MigsViMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MigsVi checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016009 + MigsViPlantAssociated: + description: MIxS Data that comply with the MigsVi checklist and the PlantAssociated + Extension + title: MigsVi combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016010 + MigsViSediment: + description: MIxS Data that comply with the MigsVi checklist and the Sediment + Extension + title: MigsVi combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MigsVi + class_uri: MIXS:0010005_0016011 + MigsViSoil: + description: MIxS Data that comply with the MigsVi checklist and the Soil Extension + title: MigsVi combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MigsVi + class_uri: MIXS:0010005_0016012 + MigsViSymbiontAssociated: + description: MIxS Data that comply with the MigsVi checklist and the SymbiontAssociated + Extension + title: MigsVi combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MigsVi + class_uri: MIXS:0010005_0016023 + MigsViWastewaterSludge: + description: MIxS Data that comply with the MigsVi checklist and the WastewaterSludge + Extension + title: MigsVi combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MigsVi + class_uri: MIXS:0010005_0016013 + MigsViWater: + description: MIxS Data that comply with the MigsVi checklist and the Water Extension + title: MigsVi combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MigsVi + class_uri: MIXS:0010005_0016014 + MimagAgriculture: + description: MIxS Data that comply with the Mimag checklist and the Agriculture + Extension + title: Mimag combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - Mimag + class_uri: MIXS:0010011_0016018 + MimagAir: + description: MIxS Data that comply with the Mimag checklist and the Air Extension + title: Mimag combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - Mimag + class_uri: MIXS:0010011_0016000 + MimagBuiltEnvironment: + description: MIxS Data that comply with the Mimag checklist and the BuiltEnvironment + Extension + title: Mimag combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - Mimag + class_uri: MIXS:0010011_0016001 + MimagFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the Mimag checklist and the FoodAnimalAndAnimalFeed + Extension + title: Mimag combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - Mimag + class_uri: MIXS:0010011_0016019 + MimagFoodFarmEnvironment: + description: MIxS Data that comply with the Mimag checklist and the FoodFarmEnvironment + Extension + title: Mimag combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - Mimag + class_uri: MIXS:0010011_0016020 + MimagFoodFoodProductionFacility: + description: MIxS Data that comply with the Mimag checklist and the FoodFoodProductionFacility + Extension + title: Mimag combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - Mimag + class_uri: MIXS:0010011_0016021 + MimagFoodHumanFoods: + description: MIxS Data that comply with the Mimag checklist and the FoodHumanFoods + Extension + title: Mimag combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - Mimag + class_uri: MIXS:0010011_0016022 + MimagHostAssociated: + description: MIxS Data that comply with the Mimag checklist and the HostAssociated + Extension + title: Mimag combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016002 + MimagHumanAssociated: + description: MIxS Data that comply with the Mimag checklist and the HumanAssociated + Extension + title: Mimag combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016003 + MimagHumanGut: + description: MIxS Data that comply with the Mimag checklist and the HumanGut + Extension + title: Mimag combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - Mimag + class_uri: MIXS:0010011_0016004 + MimagHumanOral: + description: MIxS Data that comply with the Mimag checklist and the HumanOral + Extension + title: Mimag combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - Mimag + class_uri: MIXS:0010011_0016005 + MimagHumanSkin: + description: MIxS Data that comply with the Mimag checklist and the HumanSkin + Extension + title: Mimag combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - Mimag + class_uri: MIXS:0010011_0016006 + MimagHumanVaginal: + description: MIxS Data that comply with the Mimag checklist and the HumanVaginal + Extension + title: Mimag combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - Mimag + class_uri: MIXS:0010011_0016007 + MimagHydrocarbonResourcesCores: + description: MIxS Data that comply with the Mimag checklist and the HydrocarbonResourcesCores + Extension + title: Mimag combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - Mimag + class_uri: MIXS:0010011_0016015 + MimagHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the Mimag checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Mimag combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Mimag + class_uri: MIXS:0010011_0016016 + MimagMicrobialMatBiofilm: + description: MIxS Data that comply with the Mimag checklist and the MicrobialMatBiofilm + Extension + title: Mimag combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - Mimag + class_uri: MIXS:0010011_0016008 + MimagMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the Mimag checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Mimag combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Mimag + class_uri: MIXS:0010011_0016009 + MimagPlantAssociated: + description: MIxS Data that comply with the Mimag checklist and the PlantAssociated + Extension + title: Mimag combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016010 + MimagSediment: + description: MIxS Data that comply with the Mimag checklist and the Sediment + Extension + title: Mimag combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - Mimag + class_uri: MIXS:0010011_0016011 + MimagSoil: + description: MIxS Data that comply with the Mimag checklist and the Soil Extension + title: Mimag combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - Mimag + class_uri: MIXS:0010011_0016012 + MimagSymbiontAssociated: + description: MIxS Data that comply with the Mimag checklist and the SymbiontAssociated + Extension + title: Mimag combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - Mimag + class_uri: MIXS:0010011_0016023 + MimagWastewaterSludge: + description: MIxS Data that comply with the Mimag checklist and the WastewaterSludge + Extension + title: Mimag combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - Mimag + class_uri: MIXS:0010011_0016013 + MimagWater: + description: MIxS Data that comply with the Mimag checklist and the Water Extension + title: Mimag combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - Mimag + class_uri: MIXS:0010011_0016014 + MimarksCAgriculture: + description: MIxS Data that comply with the MimarksC checklist and the Agriculture + Extension + title: MimarksC combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MimarksC + class_uri: MIXS:0010009_0016018 + MimarksCAir: + description: MIxS Data that comply with the MimarksC checklist and the Air Extension + title: MimarksC combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MimarksC + class_uri: MIXS:0010009_0016000 + MimarksCBuiltEnvironment: + description: MIxS Data that comply with the MimarksC checklist and the BuiltEnvironment + Extension + title: MimarksC combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016001 + MimarksCFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MimarksC checklist and the FoodAnimalAndAnimalFeed + Extension + title: MimarksC combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MimarksC + class_uri: MIXS:0010009_0016019 + MimarksCFoodFarmEnvironment: + description: MIxS Data that comply with the MimarksC checklist and the FoodFarmEnvironment + Extension + title: MimarksC combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016020 + MimarksCFoodFoodProductionFacility: + description: MIxS Data that comply with the MimarksC checklist and the FoodFoodProductionFacility + Extension + title: MimarksC combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MimarksC + class_uri: MIXS:0010009_0016021 + MimarksCFoodHumanFoods: + description: MIxS Data that comply with the MimarksC checklist and the FoodHumanFoods + Extension + title: MimarksC combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MimarksC + class_uri: MIXS:0010009_0016022 + MimarksCHostAssociated: + description: MIxS Data that comply with the MimarksC checklist and the HostAssociated + Extension + title: MimarksC combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016002 + MimarksCHumanAssociated: + description: MIxS Data that comply with the MimarksC checklist and the HumanAssociated + Extension + title: MimarksC combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016003 + MimarksCHumanGut: + description: MIxS Data that comply with the MimarksC checklist and the HumanGut + Extension + title: MimarksC combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MimarksC + class_uri: MIXS:0010009_0016004 + MimarksCHumanOral: + description: MIxS Data that comply with the MimarksC checklist and the HumanOral + Extension + title: MimarksC combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MimarksC + class_uri: MIXS:0010009_0016005 + MimarksCHumanSkin: + description: MIxS Data that comply with the MimarksC checklist and the HumanSkin + Extension + title: MimarksC combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MimarksC + class_uri: MIXS:0010009_0016006 + MimarksCHumanVaginal: + description: MIxS Data that comply with the MimarksC checklist and the HumanVaginal + Extension + title: MimarksC combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MimarksC + class_uri: MIXS:0010009_0016007 + MimarksCHydrocarbonResourcesCores: + description: MIxS Data that comply with the MimarksC checklist and the HydrocarbonResourcesCores + Extension + title: MimarksC combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MimarksC + class_uri: MIXS:0010009_0016015 + MimarksCHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MimarksC checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MimarksC combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MimarksC + class_uri: MIXS:0010009_0016016 + MimarksCMicrobialMatBiofilm: + description: MIxS Data that comply with the MimarksC checklist and the MicrobialMatBiofilm + Extension + title: MimarksC combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MimarksC + class_uri: MIXS:0010009_0016008 + MimarksCMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MimarksC checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016009 + MimarksCPlantAssociated: + description: MIxS Data that comply with the MimarksC checklist and the PlantAssociated + Extension + title: MimarksC combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016010 + MimarksCSediment: + description: MIxS Data that comply with the MimarksC checklist and the Sediment + Extension + title: MimarksC combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MimarksC + class_uri: MIXS:0010009_0016011 + MimarksCSoil: + description: MIxS Data that comply with the MimarksC checklist and the Soil Extension + title: MimarksC combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MimarksC + class_uri: MIXS:0010009_0016012 + MimarksCSymbiontAssociated: + description: MIxS Data that comply with the MimarksC checklist and the SymbiontAssociated + Extension + title: MimarksC combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MimarksC + class_uri: MIXS:0010009_0016023 + MimarksCWastewaterSludge: + description: MIxS Data that comply with the MimarksC checklist and the WastewaterSludge + Extension + title: MimarksC combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MimarksC + class_uri: MIXS:0010009_0016013 + MimarksCWater: + description: MIxS Data that comply with the MimarksC checklist and the Water + Extension + title: MimarksC combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MimarksC + class_uri: MIXS:0010009_0016014 + MimarksSAgriculture: + description: MIxS Data that comply with the MimarksS checklist and the Agriculture + Extension + title: MimarksS combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - MimarksS + class_uri: MIXS:0010008_0016018 + MimarksSAir: + description: MIxS Data that comply with the MimarksS checklist and the Air Extension + title: MimarksS combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - MimarksS + class_uri: MIXS:0010008_0016000 + MimarksSBuiltEnvironment: + description: MIxS Data that comply with the MimarksS checklist and the BuiltEnvironment + Extension + title: MimarksS combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016001 + MimarksSFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the MimarksS checklist and the FoodAnimalAndAnimalFeed + Extension + title: MimarksS combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - MimarksS + class_uri: MIXS:0010008_0016019 + MimarksSFoodFarmEnvironment: + description: MIxS Data that comply with the MimarksS checklist and the FoodFarmEnvironment + Extension + title: MimarksS combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016020 + MimarksSFoodFoodProductionFacility: + description: MIxS Data that comply with the MimarksS checklist and the FoodFoodProductionFacility + Extension + title: MimarksS combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - MimarksS + class_uri: MIXS:0010008_0016021 + MimarksSFoodHumanFoods: + description: MIxS Data that comply with the MimarksS checklist and the FoodHumanFoods + Extension + title: MimarksS combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - MimarksS + class_uri: MIXS:0010008_0016022 + MimarksSHostAssociated: + description: MIxS Data that comply with the MimarksS checklist and the HostAssociated + Extension + title: MimarksS combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016002 + MimarksSHumanAssociated: + description: MIxS Data that comply with the MimarksS checklist and the HumanAssociated + Extension + title: MimarksS combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016003 + MimarksSHumanGut: + description: MIxS Data that comply with the MimarksS checklist and the HumanGut + Extension + title: MimarksS combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - MimarksS + class_uri: MIXS:0010008_0016004 + MimarksSHumanOral: + description: MIxS Data that comply with the MimarksS checklist and the HumanOral + Extension + title: MimarksS combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - MimarksS + class_uri: MIXS:0010008_0016005 + MimarksSHumanSkin: + description: MIxS Data that comply with the MimarksS checklist and the HumanSkin + Extension + title: MimarksS combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - MimarksS + class_uri: MIXS:0010008_0016006 + MimarksSHumanVaginal: + description: MIxS Data that comply with the MimarksS checklist and the HumanVaginal + Extension + title: MimarksS combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - MimarksS + class_uri: MIXS:0010008_0016007 + MimarksSHydrocarbonResourcesCores: + description: MIxS Data that comply with the MimarksS checklist and the HydrocarbonResourcesCores + Extension + title: MimarksS combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - MimarksS + class_uri: MIXS:0010008_0016015 + MimarksSHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the MimarksS checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: MimarksS combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - MimarksS + class_uri: MIXS:0010008_0016016 + MimarksSMicrobialMatBiofilm: + description: MIxS Data that comply with the MimarksS checklist and the MicrobialMatBiofilm + Extension + title: MimarksS combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - MimarksS + class_uri: MIXS:0010008_0016008 + MimarksSMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the MimarksS checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016009 + MimarksSPlantAssociated: + description: MIxS Data that comply with the MimarksS checklist and the PlantAssociated + Extension + title: MimarksS combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016010 + MimarksSSediment: + description: MIxS Data that comply with the MimarksS checklist and the Sediment + Extension + title: MimarksS combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - MimarksS + class_uri: MIXS:0010008_0016011 + MimarksSSoil: + description: MIxS Data that comply with the MimarksS checklist and the Soil Extension + title: MimarksS combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - MimarksS + class_uri: MIXS:0010008_0016012 + MimarksSSymbiontAssociated: + description: MIxS Data that comply with the MimarksS checklist and the SymbiontAssociated + Extension + title: MimarksS combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - MimarksS + class_uri: MIXS:0010008_0016023 + MimarksSWastewaterSludge: + description: MIxS Data that comply with the MimarksS checklist and the WastewaterSludge + Extension + title: MimarksS combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - MimarksS + class_uri: MIXS:0010008_0016013 + MimarksSWater: + description: MIxS Data that comply with the MimarksS checklist and the Water + Extension + title: MimarksS combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - MimarksS + class_uri: MIXS:0010008_0016014 + MimsAgriculture: + description: MIxS Data that comply with the Mims checklist and the Agriculture + Extension + title: Mims combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - Mims + class_uri: MIXS:0010007_0016018 + MimsAir: + description: MIxS Data that comply with the Mims checklist and the Air Extension + title: Mims combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - Mims + class_uri: MIXS:0010007_0016000 + MimsBuiltEnvironment: + description: MIxS Data that comply with the Mims checklist and the BuiltEnvironment + Extension + title: Mims combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - Mims + class_uri: MIXS:0010007_0016001 + MimsFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the Mims checklist and the FoodAnimalAndAnimalFeed + Extension + title: Mims combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - Mims + class_uri: MIXS:0010007_0016019 + MimsFoodFarmEnvironment: + description: MIxS Data that comply with the Mims checklist and the FoodFarmEnvironment + Extension + title: Mims combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - Mims + class_uri: MIXS:0010007_0016020 + MimsFoodFoodProductionFacility: + description: MIxS Data that comply with the Mims checklist and the FoodFoodProductionFacility + Extension + title: Mims combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - Mims + class_uri: MIXS:0010007_0016021 + MimsFoodHumanFoods: + description: MIxS Data that comply with the Mims checklist and the FoodHumanFoods + Extension + title: Mims combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - Mims + class_uri: MIXS:0010007_0016022 + MimsHostAssociated: + description: MIxS Data that comply with the Mims checklist and the HostAssociated + Extension + title: Mims combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016002 + MimsHumanAssociated: + description: MIxS Data that comply with the Mims checklist and the HumanAssociated + Extension + title: Mims combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016003 + MimsHumanGut: + description: MIxS Data that comply with the Mims checklist and the HumanGut Extension + title: Mims combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - Mims + class_uri: MIXS:0010007_0016004 + MimsHumanOral: + description: MIxS Data that comply with the Mims checklist and the HumanOral + Extension + title: Mims combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - Mims + class_uri: MIXS:0010007_0016005 + MimsHumanSkin: + description: MIxS Data that comply with the Mims checklist and the HumanSkin + Extension + title: Mims combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - Mims + class_uri: MIXS:0010007_0016006 + MimsHumanVaginal: + description: MIxS Data that comply with the Mims checklist and the HumanVaginal + Extension + title: Mims combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - Mims + class_uri: MIXS:0010007_0016007 + MimsHydrocarbonResourcesCores: + description: MIxS Data that comply with the Mims checklist and the HydrocarbonResourcesCores + Extension + title: Mims combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - Mims + class_uri: MIXS:0010007_0016015 + MimsHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the Mims checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Mims combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Mims + class_uri: MIXS:0010007_0016016 + MimsMicrobialMatBiofilm: + description: MIxS Data that comply with the Mims checklist and the MicrobialMatBiofilm + Extension + title: Mims combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - Mims + class_uri: MIXS:0010007_0016008 + MimsMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the Mims checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Mims combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Mims + class_uri: MIXS:0010007_0016009 + MimsPlantAssociated: + description: MIxS Data that comply with the Mims checklist and the PlantAssociated + Extension + title: Mims combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016010 + MimsSediment: + description: MIxS Data that comply with the Mims checklist and the Sediment Extension + title: Mims combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - Mims + class_uri: MIXS:0010007_0016011 + MimsSoil: + description: MIxS Data that comply with the Mims checklist and the Soil Extension + title: Mims combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - Mims + class_uri: MIXS:0010007_0016012 + MimsSymbiontAssociated: + description: MIxS Data that comply with the Mims checklist and the SymbiontAssociated + Extension + title: Mims combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - Mims + class_uri: MIXS:0010007_0016023 + MimsWastewaterSludge: + description: MIxS Data that comply with the Mims checklist and the WastewaterSludge + Extension + title: Mims combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - Mims + class_uri: MIXS:0010007_0016013 + MimsWater: + description: MIxS Data that comply with the Mims checklist and the Water Extension + title: Mims combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - Mims + class_uri: MIXS:0010007_0016014 + MisagAgriculture: + description: MIxS Data that comply with the Misag checklist and the Agriculture + Extension + title: Misag combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - Misag + class_uri: MIXS:0010010_0016018 + MisagAir: + description: MIxS Data that comply with the Misag checklist and the Air Extension + title: Misag combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - Misag + class_uri: MIXS:0010010_0016000 + MisagBuiltEnvironment: + description: MIxS Data that comply with the Misag checklist and the BuiltEnvironment + Extension + title: Misag combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - Misag + class_uri: MIXS:0010010_0016001 + MisagFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the Misag checklist and the FoodAnimalAndAnimalFeed + Extension + title: Misag combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - Misag + class_uri: MIXS:0010010_0016019 + MisagFoodFarmEnvironment: + description: MIxS Data that comply with the Misag checklist and the FoodFarmEnvironment + Extension + title: Misag combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - Misag + class_uri: MIXS:0010010_0016020 + MisagFoodFoodProductionFacility: + description: MIxS Data that comply with the Misag checklist and the FoodFoodProductionFacility + Extension + title: Misag combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - Misag + class_uri: MIXS:0010010_0016021 + MisagFoodHumanFoods: + description: MIxS Data that comply with the Misag checklist and the FoodHumanFoods + Extension + title: Misag combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - Misag + class_uri: MIXS:0010010_0016022 + MisagHostAssociated: + description: MIxS Data that comply with the Misag checklist and the HostAssociated + Extension + title: Misag combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016002 + MisagHumanAssociated: + description: MIxS Data that comply with the Misag checklist and the HumanAssociated + Extension + title: Misag combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016003 + MisagHumanGut: + description: MIxS Data that comply with the Misag checklist and the HumanGut + Extension + title: Misag combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - Misag + class_uri: MIXS:0010010_0016004 + MisagHumanOral: + description: MIxS Data that comply with the Misag checklist and the HumanOral + Extension + title: Misag combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - Misag + class_uri: MIXS:0010010_0016005 + MisagHumanSkin: + description: MIxS Data that comply with the Misag checklist and the HumanSkin + Extension + title: Misag combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - Misag + class_uri: MIXS:0010010_0016006 + MisagHumanVaginal: + description: MIxS Data that comply with the Misag checklist and the HumanVaginal + Extension + title: Misag combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - Misag + class_uri: MIXS:0010010_0016007 + MisagHydrocarbonResourcesCores: + description: MIxS Data that comply with the Misag checklist and the HydrocarbonResourcesCores + Extension + title: Misag combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - Misag + class_uri: MIXS:0010010_0016015 + MisagHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the Misag checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Misag combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Misag + class_uri: MIXS:0010010_0016016 + MisagMicrobialMatBiofilm: + description: MIxS Data that comply with the Misag checklist and the MicrobialMatBiofilm + Extension + title: Misag combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - Misag + class_uri: MIXS:0010010_0016008 + MisagMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the Misag checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Misag combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Misag + class_uri: MIXS:0010010_0016009 + MisagPlantAssociated: + description: MIxS Data that comply with the Misag checklist and the PlantAssociated + Extension + title: Misag combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016010 + MisagSediment: + description: MIxS Data that comply with the Misag checklist and the Sediment + Extension + title: Misag combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - Misag + class_uri: MIXS:0010010_0016011 + MisagSoil: + description: MIxS Data that comply with the Misag checklist and the Soil Extension + title: Misag combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - Misag + class_uri: MIXS:0010010_0016012 + MisagSymbiontAssociated: + description: MIxS Data that comply with the Misag checklist and the SymbiontAssociated + Extension + title: Misag combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - Misag + class_uri: MIXS:0010010_0016023 + MisagWastewaterSludge: + description: MIxS Data that comply with the Misag checklist and the WastewaterSludge + Extension + title: Misag combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - Misag + class_uri: MIXS:0010010_0016013 + MisagWater: + description: MIxS Data that comply with the Misag checklist and the Water Extension + title: Misag combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - Misag + class_uri: MIXS:0010010_0016014 + MiuvigAgriculture: + description: MIxS Data that comply with the Miuvig checklist and the Agriculture + Extension + title: Miuvig combined with Agriculture + in_subset: + - combination_classes + is_a: Agriculture + mixins: + - Miuvig + class_uri: MIXS:0010012_0016018 + MiuvigAir: + description: MIxS Data that comply with the Miuvig checklist and the Air Extension + title: Miuvig combined with Air + in_subset: + - combination_classes + is_a: Air + mixins: + - Miuvig + class_uri: MIXS:0010012_0016000 + MiuvigBuiltEnvironment: + description: MIxS Data that comply with the Miuvig checklist and the BuiltEnvironment + Extension + title: Miuvig combined with BuiltEnvironment + in_subset: + - combination_classes + is_a: BuiltEnvironment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016001 + MiuvigFoodAnimalAndAnimalFeed: + description: MIxS Data that comply with the Miuvig checklist and the FoodAnimalAndAnimalFeed + Extension + title: Miuvig combined with FoodAnimalAndAnimalFeed + in_subset: + - combination_classes + is_a: FoodAnimalAndAnimalFeed + mixins: + - Miuvig + class_uri: MIXS:0010012_0016019 + MiuvigFoodFarmEnvironment: + description: MIxS Data that comply with the Miuvig checklist and the FoodFarmEnvironment + Extension + title: Miuvig combined with FoodFarmEnvironment + in_subset: + - combination_classes + is_a: FoodFarmEnvironment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016020 + MiuvigFoodFoodProductionFacility: + description: MIxS Data that comply with the Miuvig checklist and the FoodFoodProductionFacility + Extension + title: Miuvig combined with FoodFoodProductionFacility + in_subset: + - combination_classes + is_a: FoodFoodProductionFacility + mixins: + - Miuvig + class_uri: MIXS:0010012_0016021 + MiuvigFoodHumanFoods: + description: MIxS Data that comply with the Miuvig checklist and the FoodHumanFoods + Extension + title: Miuvig combined with FoodHumanFoods + in_subset: + - combination_classes + is_a: FoodHumanFoods + mixins: + - Miuvig + class_uri: MIXS:0010012_0016022 + MiuvigHostAssociated: + description: MIxS Data that comply with the Miuvig checklist and the HostAssociated + Extension + title: Miuvig combined with HostAssociated + in_subset: + - combination_classes + is_a: HostAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016002 + MiuvigHumanAssociated: + description: MIxS Data that comply with the Miuvig checklist and the HumanAssociated + Extension + title: Miuvig combined with HumanAssociated + in_subset: + - combination_classes + is_a: HumanAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016003 + MiuvigHumanGut: + description: MIxS Data that comply with the Miuvig checklist and the HumanGut + Extension + title: Miuvig combined with HumanGut + in_subset: + - combination_classes + is_a: HumanGut + mixins: + - Miuvig + class_uri: MIXS:0010012_0016004 + MiuvigHumanOral: + description: MIxS Data that comply with the Miuvig checklist and the HumanOral + Extension + title: Miuvig combined with HumanOral + in_subset: + - combination_classes + is_a: HumanOral + mixins: + - Miuvig + class_uri: MIXS:0010012_0016005 + MiuvigHumanSkin: + description: MIxS Data that comply with the Miuvig checklist and the HumanSkin + Extension + title: Miuvig combined with HumanSkin + in_subset: + - combination_classes + is_a: HumanSkin + mixins: + - Miuvig + class_uri: MIXS:0010012_0016006 + MiuvigHumanVaginal: + description: MIxS Data that comply with the Miuvig checklist and the HumanVaginal + Extension + title: Miuvig combined with HumanVaginal + in_subset: + - combination_classes + is_a: HumanVaginal + mixins: + - Miuvig + class_uri: MIXS:0010012_0016007 + MiuvigHydrocarbonResourcesCores: + description: MIxS Data that comply with the Miuvig checklist and the HydrocarbonResourcesCores + Extension + title: Miuvig combined with HydrocarbonResourcesCores + in_subset: + - combination_classes + is_a: HydrocarbonResourcesCores + mixins: + - Miuvig + class_uri: MIXS:0010012_0016015 + MiuvigHydrocarbonResourcesFluidsSwabs: + description: MIxS Data that comply with the Miuvig checklist and the HydrocarbonResourcesFluidsSwabs + Extension + title: Miuvig combined with HydrocarbonResourcesFluidsSwabs + in_subset: + - combination_classes + is_a: HydrocarbonResourcesFluidsSwabs + mixins: + - Miuvig + class_uri: MIXS:0010012_0016016 + MiuvigMicrobialMatBiofilm: + description: MIxS Data that comply with the Miuvig checklist and the MicrobialMatBiofilm + Extension + title: Miuvig combined with MicrobialMatBiofilm + in_subset: + - combination_classes + is_a: MicrobialMatBiofilm + mixins: + - Miuvig + class_uri: MIXS:0010012_0016008 + MiuvigMiscellaneousNaturalOrArtificialEnvironment: + description: MIxS Data that comply with the Miuvig checklist and the MiscellaneousNaturalOrArtificialEnvironment + Extension + title: Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment + in_subset: + - combination_classes + is_a: MiscellaneousNaturalOrArtificialEnvironment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016009 + MiuvigPlantAssociated: + description: MIxS Data that comply with the Miuvig checklist and the PlantAssociated + Extension + title: Miuvig combined with PlantAssociated + in_subset: + - combination_classes + is_a: PlantAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016010 + MiuvigSediment: + description: MIxS Data that comply with the Miuvig checklist and the Sediment + Extension + title: Miuvig combined with Sediment + in_subset: + - combination_classes + is_a: Sediment + mixins: + - Miuvig + class_uri: MIXS:0010012_0016011 + MiuvigSoil: + description: MIxS Data that comply with the Miuvig checklist and the Soil Extension + title: Miuvig combined with Soil + in_subset: + - combination_classes + is_a: Soil + mixins: + - Miuvig + class_uri: MIXS:0010012_0016012 + MiuvigSymbiontAssociated: + description: MIxS Data that comply with the Miuvig checklist and the SymbiontAssociated + Extension + title: Miuvig combined with SymbiontAssociated + in_subset: + - combination_classes + is_a: SymbiontAssociated + mixins: + - Miuvig + class_uri: MIXS:0010012_0016023 + MiuvigWastewaterSludge: + description: MIxS Data that comply with the Miuvig checklist and the WastewaterSludge + Extension + title: Miuvig combined with WastewaterSludge + in_subset: + - combination_classes + is_a: WastewaterSludge + mixins: + - Miuvig + class_uri: MIXS:0010012_0016013 + MiuvigWater: + description: MIxS Data that comply with the Miuvig checklist and the Water Extension + title: Miuvig combined with Water + in_subset: + - combination_classes + is_a: Water + mixins: + - Miuvig + class_uri: MIXS:0010012_0016014 +settings: + agrochemical_name: .* + amount: '[-+]?[0-9]*\.?[0-9]+' + add_recov_methods: Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer + Addition|Surfactant Addition|Not Applicable|other + DOI: ^doi:10.\d{2,9}/.*$ + NCBItaxon_id: NCBITaxon:\d+ + PMID: ^PMID:\d+$ + URL: ^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$ + adapter: '[ACGTRKSYMWBHDVN]+' + adapter_A_DNA_sequence: '[ACGTRKSYMWBHDVN]+' + adapter_B_DNA_sequence: '[ACGTRKSYMWBHDVN]+' + ambiguous_nucleotides: '[ACGTRKSYMWBHDVN]+' + country: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + date_time_stamp: (\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$ + duration: P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W) + float: '[-+]?[0-9]*\.?[0-9]+' + integer: '[1-9][0-9]*' + lat: (-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) + lon: -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2}) + name: .* + parameters: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + particulate_matter_name: .* + region: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + room_name: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + room_number: '[1-9][0-9]*' + scientific_float: '[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?' + software: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + specific_location: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + storage_condition_type: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + termID: '[a-zA-Z]{2,}:[a-zA-Z0-9]\d+' + termLabel: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + text: .* + unit: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) + version: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+) diff --git a/src/scripts/describe_enums_by_slots_using.py b/src/scripts/describe_enums_by_slots_using.py index a8d688ab16..3fbd63ce28 100644 --- a/src/scripts/describe_enums_by_slots_using.py +++ b/src/scripts/describe_enums_by_slots_using.py @@ -4,8 +4,8 @@ @click.command() -@click.option('--schema_file', type=str, default="../mixs/schema/mixs.yaml", help="Path to the input schema file.") -@click.option('--output_file', type=str, default='../../mixs_with_enum_descriptions.yaml', show_default=True, +@click.option('--schema-file', type=str, default="src/mixs/schema/mixs.yaml", help="Path to the input schema file.") +@click.option('--output-file', type=str, default='mixs_with_enum_descriptions.yaml', show_default=True, help="Path to the output schema file with updated enum descriptions.") def update_enum_descriptions(schema_file: str, output_file: str) -> None: """