NAMESPACE

# Generated by roxygen2: do not edit by hand

export(prepare_samples)
export(prepare_solo_samples)
export(run_bcftools)
export(run_bedtools)
export(run_blast)
export(run_bowtie)
export(run_bowtie2)
export(run_bwa)
export(run_centrifuge)
export(run_cutadapt)
export(run_cuteSV)
export(run_deeptools)
export(run_fastp)
export(run_fastq_screen)
export(run_fastqc)
export(run_flye)
export(run_freebayes)
export(run_gatk)
export(run_hisat2)
export(run_htseq_count)
export(run_kallisto)
export(run_macs)
export(run_mageck)
export(run_masurca)
export(run_minimap2)
export(run_multiqc)
export(run_nanofilt)
export(run_picard)
export(run_samtools)
export(run_seqtk)
export(run_sicer)
export(run_snpeff)
export(run_snpsift)
export(run_star)
export(run_stringtie)
export(run_umitools)
export(run_vcf_index)
export(run_vcftools)
export(save_pheatmap_png)
import(grDevices)
import(parallel)