ci-cogent3-dev.yml

name: "Test against Cogent3 develop branch"

on:
    schedule:
      - cron: '0 21 * * *' # 7am AEST
    workflow_dispatch:  # support for manual triggering

jobs:
  cogent3-dev:
    name: "cogent3-dev"
    runs-on: ubuntu-latest
    if: github.repository == 'HuttleyLab/DiverseSeq'

    steps:
      - uses: "actions/checkout@v4"
        with:
          fetch-depth: 0

      - uses: "actions/setup-python@v5"
        with:
            python-version: "3.12"

      - name: Install uv
        uses: astral-sh/setup-uv@v5
        with:
            enable-cache: true

      - name: Install the cogent3 dev branch
        run: |
          uv pip install "cogent3 @ git+https://github.com/cogent3/cogent3.git@develop" --system

      - name: Install the project
        run: |
          uv pip install ".[test]" --system

      - name: Run tests
        run: uv run pytest tests