diff --git a/program/shinyApp/R/significance_analysis/ui.R b/program/shinyApp/R/significance_analysis/ui.R index 977fd45b..2289d247 100644 --- a/program/shinyApp/R/significance_analysis/ui.R +++ b/program/shinyApp/R/significance_analysis/ui.R @@ -30,7 +30,7 @@ significance_analysis_sidebar_ui<- function(ns){ significance_analysis_main_ui <- function(ns){ mainPanel( id = "main_significance_analysis", - # informative text, whether ana lysis was done or not + # informative text, whether analysis was done or not htmlOutput(outputId = ns("significance_analysis_info"), container = pre), tabsetPanel( id = ns("significance_analysis_results"), diff --git a/program/shinyApp/R/significance_analysis/util.R b/program/shinyApp/R/significance_analysis/util.R index 42c35f5f..69e62c1e 100644 --- a/program/shinyApp/R/significance_analysis/util.R +++ b/program/shinyApp/R/significance_analysis/util.R @@ -209,7 +209,7 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n fixedColumns = TRUE, autoWidth = TRUE, ordering = TRUE, - order = list(list(4, 'asc'), list(5, 'asc')), # 2=padj, 1=pvalue + order = list(list(4, 'asc'), list(5, 'asc')), # 4=padj, 5=pvalue dom = 'Bfrtip', lengthMenu = c(10, 25, 50, 100, -1), buttons = c('pageLength', 'copy', 'csv', 'excel') @@ -297,8 +297,9 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n ) + scale_color_manual(values=colorScheme2, name="") + xlab("Log FoldChange") + - ylab("-log10(p-value)") + + ylab("-log10(p_adj-value)") + theme(legend.position = "none") + + theme_bw()+ ggtitle(label="Corrected p-Values") output[[ns(paste(contrast[1], contrast[2], "Volcano", sep = "_"))]] <- renderPlotly({ggplotly( sig_ana_reactive$VolcanoPlot, @@ -323,6 +324,7 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n scale_color_manual(values=colorScheme2, name="") + xlab("Log FoldChange") + ylab("-log10(p-value)") + + theme_bw()+ ggtitle(label="Uncorrected p-Values") output[[ns(paste(contrast[1], contrast[2], "Volcano_praw", sep = "_"))]] <- renderPlotly({ggplotly( sig_ana_reactive$VolcanoPlot_raw,