readme.md

Manual Installation Guide

If you haven't already done so, try running the installation via setup.py file according to the general pypulseq-cest readme.

Prerequisites

1. The BMCTool package has to be installed. This can be done by running pip install bmctool. Using pip ensures that the required pypulseq package and pyYaml package are installed as well.
2. The following programs have to be installed on your computer:
   • Git
   • SWIG (Installation for Windows)
   • a working C++ compiler
     • for Linux, this comes with your operating system
     • for Windows, you need Visual C++ v.12.0 or higher, e.g. Microsoft Visual C++ Redistributable

Manual Installation

To manually install the pypulseq-cest code, please follow these steps:

1. From this (src) directory, install the pypulseq_cest package by running the following commands in the terminal (linux users might need to add the sudo pre-command or --user post-command)

    python setup_pypulseq_cest.py install

2. switch to the src/compile directory
3. install the pySimPulseqSBB package by running the following commands in the terminal (linux users might need to add the sudo pre-command or --user post-command)

    python setup.py build_ext --inplace
    python setup.py install

PLEASE NOTE THAT THIS IS NOT THE setup.py FILE FROM THE ROOT DIRECTORY