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package.xml
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<?xml version="1.0" encoding="utf-8"?>
<package name="ROFSim" displayName="ROF SyncroSim Package" version="1.0.3">
<!-- Transformers -->
<transformers>
<transformer name="Primary" isPrimary="True">
<include>
<transformer name="corestime_Runtime" />
<transformer name="LoadSpadesOutputs" />
<transformer name="makeLCCFromCohortData" />
<transformer name="PrepareSpatialData" />
<transformer name="RunCaribouHabitatModel" />
<transformer name="RunBirdModels" />
</include>
<datafeeds>
<!-- Project Datafeeds -->
<datafeed name="SpaDESSimObject" displayName="SpaDES Sim Objects" dataScope="Project">
<datasheets>
<datasheet name="SpaDESSimObject" displayName="SpaDES Sim Objects" valueMember="SpaDESSimObjectID" displayMember="Name">
<columns>
<column name="SpaDESSimObjectID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" displayName="Sim Object Name" dataType="String" />
<column name="Description" dataType="String" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<!-- datafeed name="Variable" displayName="Tabular Variables" dataScope="Project">
<datasheets>
<datasheet name="Variable" displayName="Variables" valueMember="VariableID" displayMember="Name">
<columns>
<column name="VariableID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" dataType="String" />
<column name="Description" dataType="String" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed -->
<datafeed name="Rasters" displayName="Rasters" dataScope="Project">
<datasheets>
<datasheet name="Rasters" displayName="Rasters" valueMember="RastersID" displayMember="Name">
<columns>
<column name="RastersID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" displayName="Variable Name" dataType="String" />
<column name="Description" dataType="String" isOptional="True" />
<column name="SpaDESSimObject " displayName="SpaDES Sim Object" dataType="Integer" validationType="Datasheet" formula1="SpaDESSimObject" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="Polygons" displayName="Polygons" dataScope="Project">
<datasheets>
<datasheet name="Polygons" displayName="Polygons" valueMember="PolygonsID" displayMember="Name">
<columns>
<column name="PolygonsID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" displayName="Variable Name" dataType="String" />
<column name="Description" dataType="String" isOptional="True" />
<column name="SpaDESSimObject " displayName="SpaDES Sim Object" dataType="Integer" validationType="Datasheet" formula1="SpaDESSimObject" isOptional="True" />
</columns>
<defaultRecords>
<record columns="Name" values="Eskers"/>
<record columns="Name" values="Linear Features"/>
<record columns="Name" values="Ranges"/>
<record columns="Name" values="Study Area"/>
</defaultRecords>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="CaribouRange" displayName="Caribou Ranges" dataScope="Project">
<datasheets>
<datasheet name="CaribouRange" displayName="Caribou Ranges" valueMember="CaribouRangeID" displayMember="Name">
<columns>
<column name="CaribouRangeID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" dataType="String" allowDbNull="False" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="BirdSpecies" displayName="Bird Species" dataScope="Project">
<datasheets>
<datasheet name="BirdSpecies" displayName="Bird Species" valueMember="BirdSpeciesID" displayMember="SpeciesCode">
<columns>
<column name="BirdSpeciesID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="SpeciesCode" dataType="String" allowDbNull="False" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="Season" displayName="Seasons" dataScope="Project">
<datasheets>
<datasheet name="Season" displayName="Seasons" valueMember="SeasonID" displayMember="Name">
<columns>
<column name="SeasonID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" dataType="String" allowDbNull="False" />
</columns>
<defaultRecords>
<record columns="Name" values="Spring"/>
<record columns="Name" values="Summer"/>
<record columns="Name" values="Fall"/>
<record columns="Name" values="Winter"/>
</defaultRecords>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="MetricTypeDisturbance" displayName="Disturbance Metric Types" dataScope="Project">
<datasheets>
<datasheet name="MetricTypeDisturbance" displayName="Disturbance Metric Types" valueMember="MetricTypeDistID" displayMember="Name">
<columns>
<column name="MetricTypeDistID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" dataType="String" allowDbNull="False" />
</columns>
<defaultRecords>
<record columns="Name" values="Anthro"/>
<record columns="Name" values="Fire"/>
<record columns="Name" values="Total_dist"/>
<record columns="Name" values="fire_excl_anthro"/>
</defaultRecords>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="MetricTypeDemography" displayName="Demographic Metric Types" dataScope="Project">
<datasheets>
<datasheet name="MetricTypeDemography" displayName="Demographic Metric Types" valueMember="MetricTypeDemogID" displayMember="Name">
<columns>
<column name="MetricTypeDemogID" dataType="Integer" isPrimary="True" />
<column name="ProjectID" dataType="Integer" />
<column name="Name" dataType="String" allowDbNull="False" />
</columns>
<defaultRecords>
<record columns="Name" values="survival"/>
<record columns="Name" values="recruitment"/>
<record columns="Name" values="N"/>
<record columns="Name" values="lambda"/>
</defaultRecords>
</datasheet>
</datasheets>
</datafeed>
<!-- Scenario Datafeeds -->
<!-- Spades -->
<datafeed name="SpaDESGeneral" displayName="General" dataScope="Scenario">
<datasheets>
<datasheet name="SpaDESGeneral" displayName="General">
<columns>
<column name="SpaDESGeneralID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" />
<column name="Filename" displayName="SpaDES File" dataType="String" allowDbNull="False" isExternalFile="True" externalFileFilter="SpaDES QS file |*.qs" externalFileAbsolute="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<!-- NON-Spades -->
<datafeed name="RunControl" displayName="Run Control" dataScope="Scenario">
<datasheets>
<datasheet name="RunControl" displayName="Run Control" isSingleRow="True">
<columns>
<column name="RunControlID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="MinimumIteration" isVisible="False" displayName="Minimum Iteration" dataType="Integer" defaultValue="1" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" />
<column name="MaximumIteration" displayName="Total Iterations" dataType="Integer" defaultValue="1" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" />
<column name="MinimumTimestep" displayName="Minimum Timestep" dataType="Integer" defaultValue="0" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" format="d" />
<column name="MaximumTimestep" displayName="Maximum Timestep" dataType="Integer" defaultValue="0" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" format="d" />
<column name="OutputFrequency" displayName="Output Frequency (Timesteps)" dataType="Integer" defaultValue="1" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" />
</columns>
<validations>
<validation validationType="LessEqual" columns="MinimumIteration|MaximumIteration" />
<validation validationType="LessEqual" columns="MinimumTimestep|MaximumTimestep" />
</validations>
</datasheet>
</datasheets>
</datafeed>
<!--datafeed name="DataSummary" displayName="Data Summary" dataScope="Scenario">
<datasheets>
<datasheet name="DataSummary" displayName="Data Summary" viewFilterColumn="VariableID">
<columns>
<column name="DataSummaryID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="VariableID" displayName="Variable" dataType="Integer" validationType="Datasheet" formula1="Variable" />
<column name="Value" dataType="Integer" />
<column name="Source" dataType="String" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed-->
<datafeed name="RasterFile" displayName="Raster Data" dataScope="Scenario">
<datasheets>
<datasheet name="RasterFile" displayName="Rasters">
<columns>
<column name="RasterFileID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="TransformerID" displayName="Transformer" dataType="Integer" validationType="Datasheet" formula1="core_Transformer" isCompositeIndex="True" isOptional="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="RastersID" displayName="Variable Name" dataType="Integer" validationType="Datasheet" formula1="Rasters" />
<column name="Filename" dataType="String" isExternalFile="True" isRaster="True" allowDbNull="True" externalFileFilter="Rasters files (*.tif)|*.tif" bandColumn="Band" bandFilterColumn="RastersID" />
<column name="Band" dataType="Integer" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="ExternalFile" displayName="Polygon Data" dataScope="Scenario">
<datasheets>
<datasheet name="ExternalFile" displayName="External Files">
<columns>
<column name="ExternalFileID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="TransformerID" displayName="Transformer" dataType="Integer" validationType="Datasheet" formula1="core_Transformer" isCompositeIndex="True" isOptional="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="PolygonsID" displayName="File Variable" dataType="Integer" validationType="Datasheet" formula1="Polygons" />
<column name="File" dataType="String" isExternalFile="True" allowDbNull="True" includeExtensions="shp|shx|dbf|prj" externalFileFilter="ShapeFiles (*.shp)|*.shp" />
</columns>
</datasheet>
</datasheets>
</datafeed>
</datafeeds>
</transformer>
<transformer name="LoadSpadesOutputs" isRunnable="True" displayName="Spades Import" programName="Rscript" programArguments="load_spades_outputs.R">
<datafeeds>
<!--datafeed name="SpaDESRuntimeVariables" displayName="Runtime Variables" dataScope="Scenario">
<datasheets>
<datasheet name="SpaDESRuntimeVariables" displayName="Runtime Variables">
<columns>
<column name="SpaDESRuntimeVariablesID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="VariableID" displayName="Variable" dataType="Integer" validationType="Datasheet" formula1="Variable" allowDbNull="False" />
</columns>
</datasheet>
</datasheets>
</datafeed-->
<datafeed name="SpaDESRuntimeRasters" displayName="Rasters" dataScope="Scenario">
<datasheets>
<datasheet name="SpaDESRuntimeRasters" displayName="Rasters">
<columns>
<column name="SpaDESRuntimeRastersID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RastersID" displayName="Raster Variable" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="False" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="SpaDESRuntimeFiles" displayName="Shape Files" dataScope="Scenario">
<datasheets>
<datasheet name="SpaDESRuntimeFiles" displayName="Shape Files">
<columns>
<column name="SpaDESRuntimeFilesID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="PolygonsID" displayName="File Variable" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="False" />
</columns>
</datasheet>
</datasheets>
</datafeed>
</datafeeds>
<pipeline>
<datafeed name="RunControl" />
<datafeed name="SpaDESGeneral" />
<datafeed name="SpaDESRuntimeRasters" />
<datafeed name="SpaDESRuntimeFiles" />
</pipeline>
</transformer>
<transformer name="makeLCCFromCohortData" displayName="Generate LCC from Cohort Data" isRunnable="True" programName="Rscript" programArguments="makeLCCFromCohortData.R">
<pipeline>
<datafeed name="RunControl" />
<datafeed name="SpaDESGeneral" />
</pipeline>
</transformer>
<transformer name="PrepareSpatialData" displayName="Prepare Spatial Data" isRunnable="True" programName="Rscript" className="SyncroSim.StochasticTime.StochasticTimeTransformer" classAssembly="SyncroSim.StochasticTime" configurationSheet="ROFSim_RunControl" programArguments="prepare_spatial_data.R">
<datafeeds>
<!-- Input Datafeeds -->
<!--
<datafeed name="CaribouDataSource2" displayName="Data Sources" dataScope="Scenario">
<datasheets>
<datasheet name="CaribouDataSource2" displayName="Data Sources" isSingleRow="True">
<columns>
<column name="CaribouDataSourceID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="LandCoverRasterID" displayName="Land Cover (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="False" />
<column name="ProjectShapeFileID" displayName="Project Area (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="False" />
<column name="EskerRasterID" displayName="Eskers (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="EskerShapeFileID" displayName="Eskers (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="True" />
<column name="LinearFeatureRasterID" displayName="Linear Feature (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="LinearFeatureShapeFileID" displayName="Linear Feature (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="True" />
<column name="NaturalDisturbanceRasterID" displayName="Natural Disturbances (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="AnthropogenicRasterID" displayName="Anthropogenic Disturbances (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="HarvestRasterID" displayName="Harvest (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
-->
<!-- Outputs Datafeeds -->
<!--
<datafeed name="OutputSpatialHabitat2" displayName="Output Habitat Spatial" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputSpatialHabitat2" displayName="Output Habitat Spatial">
<columns>
<column name="OutputSpatialHabitatID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RangeID" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="SeasonID" dataType="Integer" validationType="Datasheet" formula1="Season" allowDbNull="False" />
<column name="FileName" dataType="String" isExternalFile="True" isRaster="True" bandColumn="Band" bandFilterColumn="SeasonID" allowDbNull="False" filenameCode="habuse" />
<column name="Band" dataType="Integer" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="OutputSpatialDisturbance2" displayName="Output Disturbance Spatial" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputSpatialDisturbance2" displayName="Output Disturbance Spatial">
<columns>
<column name="OutputSpatialDisturbanceID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RangeID" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="MetricTypeDistID" dataType="Integer" validationType="Datasheet" formula1="MetricTypeDisturbance" allowDbNull="False" />
<column name="FileName" dataType="String" isExternalFile="True" isRaster="True" bandColumn="Band" bandFilterColumn="MetricTypeDistID" allowDbNull="False" filenameCode="mettype" />
<column name="Band" dataType="Integer" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
-->
</datafeeds>
<pipeline>
<!--datafeed name="DataSummary" /-->
<datafeed name="RasterFile" />
<datafeed name="ExternalFile" />
</pipeline>
</transformer>
<transformer name="RunCaribouHabitatModel" displayName="Caribou Habitat" isRunnable="True" programName="Rscript" className="SyncroSim.StochasticTime.StochasticTimeTransformer" classAssembly="SyncroSim.StochasticTime" configurationSheet="ROFSim_RunControl" programArguments="run_caribou_model.R">
<datafeeds>
<!-- Input Datafeeds -->
<datafeed name="RunCaribouRange" displayName="Caribou Range" dataScope="Scenario">
<datasheets>
<datasheet name="RunCaribouRange" displayName="Caribou Range">
<columns>
<column name="RunCaribouRangeID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="Range" displayName="Range Name" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="CoeffRange" displayName="Coeff Range Name" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False"/>
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="CaribouModelOptions" displayName="Caribou Model Options" dataScope="Scenario">
<datasheets>
<datasheet name="CaribouModelOptions" displayName="Caribou Model Options" isSingleRow="True">
<columns>
<column name="CaribouModelOptionsID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RunDistMetrics" displayName="Run ECCC Disturbance Metrics" dataType="Boolean" />
<column name="RunDemographicModel" displayName="Run Aspatial Demographic Model" dataType="Boolean" />
<column name="RunCaribouHabitat" displayName="Run Caribou Habitat Model" dataType="Boolean" />
<column name="bufferWidth" displayName="ECCC Buffer Width" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d"/>
<column name="padProjPoly" displayName="Project Polygon Padding" dataType="Boolean" isOptional="True" />
<column name="padFocal" displayName="Focal Padding" dataType="Boolean" isOptional="True" />
<column name="NumDemographicTrajectories" displayName="Number of Demographic Trajectories" dataType="Integer" defaultValue="35" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" isOptional="True"/>
<column name="modelVersion" displayName="Demographic Model Version" dataType="String" isOptional="True"/>
<column name="survivalModelNumber" displayName="Survival Model Number" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" isOptional="True"/>
<column name="recruitmentModelNumber" displayName="Recruitment Model Number" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" isOptional="True"/>
<column name="InitialPopulation" displayName="Initial Population Size" dataType="Integer" defaultValue="1000" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="1" format="d" isOptional="True"/>
<column name="P_0" displayName="P_0: Maximum recruitment multiplier" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="P_K" displayName="P_K: Recruitment multiplier at carrying capacity" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="a" displayName="a: Density dependence shape parameter" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="b" displayName="b: Allee effect parameter" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="K" displayName="K: Carrying capacity multiplier" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="r_max" displayName="r_max: Maximum population growth rate" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="s" displayName="s: Sex ratio." dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="l_R" displayName="l_R: Minimum recruitment" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="h_R" displayName="h_R: Maximum recruitment" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="l_S" displayName="l_S: Minimum survival" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="h_S" displayName="h_S: Maximum survival" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0" isOptional="True" />
<column name="interannualVar" displayName="Interannual Variation" dataType="String" isOptional="True" />
<column name="probOption" displayName="probOption" dataType="String" isOptional="True"/>
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="CaribouDataSource" displayName="Data Sources" dataScope="Scenario">
<datasheets>
<datasheet name="CaribouDataSource" displayName="Data Sources" isSingleRow="True">
<columns>
<column name="CaribouDataSourceID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="LandCoverRasterID" displayName="Land Cover (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="False" />
<column name="ProjectShapeFileID" displayName="Project Area (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="False" />
<column name="EskerRasterID" displayName="Eskers (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="EskerShapeFileID" displayName="Eskers (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="True" />
<column name="LinearFeatureRasterID" displayName="Linear Feature (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="LinearFeatureShapeFileID" displayName="Linear Feature (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="True" />
<column name="NaturalDisturbanceRasterID" displayName="Natural Disturbances (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="AnthropogenicRasterID" displayName="Anthropogenic Disturbances (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="HarvestRasterID" displayName="Harvest (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<!-- <column name="FRIRasterID" displayName="FRI (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="False" /> -->
</columns>
</datasheet>
</datasheets>
</datafeed>
<!-- Outputs Datafeeds -->
<datafeed name="OutputSpatialHabitat" displayName="Output Habitat Spatial" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputSpatialHabitat" displayName="Output Habitat Spatial">
<columns>
<column name="OutputSpatialHabitatID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RangeID" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="SeasonID" dataType="Integer" validationType="Datasheet" formula1="Season" allowDbNull="False" />
<column name="FileName" dataType="String" isExternalFile="True" isRaster="True" bandColumn="Band" bandFilterColumn="SeasonID" allowDbNull="False" filenameCode="habuse" />
<column name="Band" dataType="Integer" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="OutputSpatialDisturbance" displayName="Output Disturbance Spatial" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputSpatialDisturbance" displayName="Output Disturbance Spatial">
<columns>
<column name="OutputSpatialDisturbanceID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RangeID" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="MetricTypeDistID" dataType="Integer" validationType="Datasheet" formula1="MetricTypeDisturbance" allowDbNull="False" />
<column name="FileName" dataType="String" isExternalFile="True" isRaster="True" bandColumn="Band" bandFilterColumn="MetricTypeDistID" allowDbNull="False" filenameCode="mettype" />
<column name="Band" dataType="Integer" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="OutputDisturbanceMetrics" displayName="Output Disturbance Metrics" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputDisturbanceMetrics" displayName="Output Disturbance Metrics">
<columns>
<column name="OutputDisturbanceMetricsID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RangeID" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="MetricTypeDistID" dataType="Integer" validationType="Datasheet" formula1="MetricTypeDisturbance" allowDbNull="False" />
<column name="Amount" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0"/>
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="OutputPopulationMetrics" displayName="Output Population Metrics" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputPopulationMetrics" displayName="Output Population Metrics">
<columns>
<column name="OutputPopulationMetricsID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RangeID" dataType="Integer" validationType="Datasheet" formula1="CaribouRange" allowDbNull="False" />
<column name="Replicate" dataType="Integer" />
<column name="MetricTypeDemogID" dataType="Integer" validationType="Datasheet" formula1="MetricTypeDemography" allowDbNull="False" />
<column name="Amount" dataType="Double" validationType="Decimal" validationCondition="GreaterEqual" formula1="0.0"/>
</columns>
</datasheet>
</datasheets>
</datafeed>
</datafeeds>
<pipeline>
<!--datafeed name="DataSummary" /-->
<datafeed name="RasterFile" />
<datafeed name="ExternalFile" />
<datafeed name="CaribouDataSource" />
<datafeed name="RunControl" />
<datafeed name="RunCaribouRange" />
<datafeed name="CaribouModelOptions" />
</pipeline>
</transformer>
<transformer name="RunBirdModels" displayName="Bird Models" isRunnable="True" programName="Rscript" className="SyncroSim.StochasticTime.StochasticTimeTransformer" classAssembly="SyncroSim.StochasticTime" configurationSheet="ROFSim_RunControl" programArguments="run_bird_models.R">
<datafeeds>
<!-- Input Datafeeds -->
<datafeed name="RunBirdSpecies" displayName="Bird Species" dataScope="Scenario">
<datasheets>
<datasheet name="RunBirdSpecies" displayName="Bird Species">
<columns>
<column name="RunBirdSpeciesID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="BirdSpecies" displayName="Bird Species" dataType="Integer" validationType="Datasheet" formula1="BirdSpecies" allowDbNull="False" />
</columns>
</datasheet>
</datasheets>
</datafeed>
<datafeed name="BirdModelDir" displayName="Bird Model Directory" dataScope="Scenario">
<datasheets>
<datasheet name="BirdModelDir" displayName="Bird Model Directory">
<columns>
<column name="BirdModelDirID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="BirdModelDir" displayName="Bird Model Directory" dataType="String" isExternalFile="False" allowDbNull="True"/>
</columns>
</datasheet>
</datasheets>
</datafeed>
<!-- Not needed for Birds?
<datafeed name="CaribouModelOptions" displayName="Caribou Model Options" dataScope="Scenario">
<datasheets>
<datasheet name="CaribouModelOptions" displayName="Caribou Model Options" isSingleRow="True">
<columns>
<column name="CaribouModelOptionsID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="RunDistMetrics" displayName="Run ECCC Disturbance Metrics" dataType="Boolean" />
<column name="RunDemographicModel" displayName="Run Aspatial Demographic Model" dataType="Boolean" />
<column name="RunCaribouHabitat" displayName="Run Caribou Habitat Model" dataType="Boolean" />
<column name="bufferWidth" displayName="ECCC Buffer Width" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d"/>
</columns>
</datasheet>
</datasheets>
</datafeed>
-->
<!-- Don't think needed for Birds
<datafeed name="CaribouDataSource" displayName="Data Sources" dataScope="Scenario">
<datasheets>
<datasheet name="CaribouDataSource" displayName="Data Sources" isSingleRow="True">
<columns>
<column name="CaribouDataSourceID" dataType="Integer" isPrimary="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="LandCoverRasterID" displayName="Land Cover (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="False" />
<column name="ProjectShapeFileID" displayName="Project Area (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="False" />
<column name="EskerRasterID" displayName="Eskers (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="EskerShapeFileID" displayName="Eskers (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="True" />
<column name="LinearFeatureRasterID" displayName="Linear Feature (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="LinearFeatureShapeFileID" displayName="Linear Feature (Polygon)" dataType="Integer" validationType="Datasheet" formula1="Polygons" allowDbNull="True" />
<column name="NaturalDisturbanceRasterID" displayName="Natural Disturbances (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="AnthropogenicRasterID" displayName="Anthropogenic Disturbances (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" />
<column name="HarvestRasterID" displayName="Harvest (Raster)" dataType="Integer" validationType="Datasheet" formula1="Rasters" allowDbNull="True" /> </columns>
</datasheet>
</datasheets>
</datafeed> -->
<!-- Outputs Datafeeds -->
<datafeed name="OutputBirdDensity" displayName="Output Bird Density" dataScope="Scenario" isOutput="True">
<datasheets>
<datasheet name="OutputBirdDensity" displayName="Output Bird Density">
<columns>
<column name="OutputBirdDensityID" dataType="Integer" isPrimary="True" />
<column name="Iteration" dataType="Integer" validationType="WholeNumber" validationCondition="Greater" formula1="0" format="d" isOptional="True" />
<column name="Timestep" dataType="Integer" validationType="WholeNumber" validationCondition="GreaterEqual" formula1="0" isOptional="True" />
<column name="ScenarioID" dataType="Integer" />
<column name="BirdSpeciesID" dataType="Integer" validationType="Datasheet" formula1="BirdSpecies" allowDbNull="False" />
<column name="FileName" dataType="String" isExternalFile="True" isRaster="True" bandColumn="Band" bandFilterColumn="BirdSpeciesID" allowDbNull="False" filenameCode="habuse" />
<column name="Band" dataType="Integer" isOptional="True" />
</columns>
</datasheet>
</datasheets>
</datafeed>
</datafeeds>
<pipeline>
<!--datafeed name="DataSummary" /-->
<datafeed name="RasterFile" />
<datafeed name="ExternalFile" />
<!--<datafeed name="CaribouDataSource" />-->
<datafeed name="RunControl" />
<datafeed name="RunBirdSpecies" />
<datafeed name="BirdModelDir" />
</pipeline>
</transformer>
</transformers>
<!-- Layouts -->
<layouts>
<!-- Core feeds layouts -->
<layout name="coreforms_LibraryDatafeeds">
<item name="core_SysFolder" />
<item name="core_Backup" />
<item name="core_Multiprocessing" />
<item name="core_Options" />
<item name="core_Rconfig" />
</layout>
<!-- Project feeds layouts -->
<layout name="coreforms_ProjectDatafeeds">
<group name="Variables">
<!-- item name="SpaDESSimObject" / -->
<!-- item name="Variable"/ -->
<!-- item name="Rasters" / -->
<!-- item name="Polygons" / -->
<item name="CaribouRange" />
<!-- item name="Season" / -->
<!-- item name="MetricType" /-->
</group>
<group name="Pipeline">
<item name="core_Transformer" />
<!-- item name="core_StageName" / -->
<!-- item name="core_StageValue" / -->
</group>
</layout>
<!-- Scenario feeds layouts -->
<layout name="coreforms_ScenarioDatafeeds">
<group name="RunControl" displayName="Run Control">
<item name="core_Pipeline"/>
<item name="RunControl"/>
</group>
<group name="SpaDES" displayName="SpaDES">
<group name="Inputs">
<item name="SpaDESGeneral" displayName="General" itemTransformer="LoadSpadesOutputs" showIf="isParent" />
<!--item name="SpaDESRuntimeVariables" /-->
<!--item name="SpaDESRuntimeRasters" itemTransformer="LoadSpadesOutputs" showIf="isParent" / -->
<!-- item name="SpaDESRuntimeFiles" itemTransformer="LoadSpadesOutputs" showIf="isParent" / -->
</group>
<group name="Outputs">
<!--item name="DataSummary" /-->
<item name="RasterFile" itemTransformer="LoadSpadesOutputs" showIf="isResult" />
<item name="ExternalFile" itemTransformer="LoadSpadesOutputs" showIf="isResult" />
</group>
</group>
<group name="makeLCCFromCohortData" displayName="Cohort to LCC">
<group name="Inputs">
<item name="SpaDESGeneral" itemTransformer="makeLCCFromCohortData" showIf="isParent"/>
</group>
<group name="Outputs">
<item name="RasterFile" itemTransformer="makeLCCFromCohortData" showIf="isResult"/>
</group>
</group>
<group name="PrepareSpatial" displayName="Prepare Spatial Data">
<group name="Inputs">
<!-- item name="CaribouDataSource" itemTransformer="PrepareSpatialData" showIf="isParent" / -->
<item name="RasterFile" itemTransformer="PrepareSpatialData" showIf="isParent" />
<item name="ExternalFile" itemTransformer="PrepareSpatialData" showIf="isParent" />
</group>
<group name="Outputs">
<item name="RasterFile" itemTransformer="PrepareSpatialData" showIf="isResult" />
<item name="ExternalFile" itemTransformer="PrepareSpatialData" showIf="isResult" />
</group>
</group>
<group name="CaribouModel" displayName="Caribou Metrics">
<group name="Inputs">
<item name="RunCaribouRange" itemTransformer="RunCaribouHabitatModel" showIf="isParent" />
<!-- item name="CaribouDataSource" itemTransformer="RunCaribouHabitatModel" showIf="isParent" / -->
<item name="CaribouModelOptions" itemTransformer="RunCaribouHabitatModel" showIf="isParent"/>
<item name="RasterFile" itemTransformer="RunCaribouHabitatModel" showIf="isParent" />
<item name="ExternalFile" itemTransformer="RunCaribouHabitatModel" showIf="isParent" />
</group>
<group name="Outputs">
<item name="OutputDisturbanceMetrics" itemTransformer="RunCaribouHabitatModel" showIf="isResult" />
<item name="OutputPopulationMetrics" itemTransformer="RunCaribouHabitatModel" showIf="isResult" />
<item name="OutputSpatialHabitat" itemTransformer="RunCaribouHabitatModel" showIf="isResult" />
<item name="OutputSpatialDisturbance" itemTransformer="RunCaribouHabitatModel" showIf="isResult" />
</group>
</group>
<group name="BirdModels" displayName="Bird Models">
<group name="Inputs">
<item name="RunBirdSpecies" itemTransformer="RunBirdModels" showIf="isParent" />
<!-- item name="CaribouDataSource" itemTransformer="RunCaribouHabitatModel" showIf="isParent" / -->
<item name="BirdModelDir" itemTransformer="RunBirdModels" showIf="isParent"/>
<item name="RasterFile" itemTransformer="RunBirdModels" showIf="isParent" />
<item name="ExternalFile" itemTransformer="RunBirdModels" showIf="isParent" />
</group>
<group name="Outputs">
<item name="OutputBirdDensity" itemTransformer="RunBirdModels" showIf="isResult" />
</group>
</group>
</layout>
<!--Results transformer Layout-->
<layout name="coreforms_ResultTransformers">
<item name="corestime_ChartTransformer" />
<item name="corestime_MapTransformer" />
</layout>
<!--Charts Layout-->
<layout name="corestimeforms_Charts" configurationSheet="ROFSim_RunControl">
<item name="DisturbanceMetrics" displayName="Disturbance Metrics" dataSheet="OutputDisturbanceMetrics" column="Amount" filter="MetricTypeDistID|RangeID" />
<item name="DemographicMetrics" displayName="Caribou Demography" dataSheet="OutputPopulationMetrics" column="Amount" filter="MetricTypeDemogID|RangeID" />
</layout>
<!--Maps Layout-->
<layout name="corestimeforms_Maps" configurationSheet="ROFSim_RunControl">
<item name="InputRastersMap" displayName="Rasters Variables" dataSheet="RasterFile" column="Filename" filter="RastersID" />
<item name="OutputRastersMap2" displayName="Disturbance (Spatial)" dataSheet="OutputSpatialDisturbance" column="FileName" filter="MetricTypeDistID" />
<item name="OutputRastersMap" displayName="Habitat Use (Spatial)" dataSheet="OutputSpatialHabitat" column="FileName" filter="SeasonID" />
<item name="OutputRastersMap3" displayName="Bird Density" dataSheet="OutputBirdDensity" column="FileName" filter="BirdSpeciesID" />
</layout>
</layouts>
<!--views>
<view name="DataSummaryDataFeedView" target="DataSummary" className="SyncroSim.Core.Forms.FilteredDataFeedView" classAssembly="SyncroSim.Core.Forms" />
</views-->
</package>