diff --git a/docs/tutorials/tut01_reference.rst b/docs/tutorials/tut01_reference.rst index 64b8a37..f53c493 100644 --- a/docs/tutorials/tut01_reference.rst +++ b/docs/tutorials/tut01_reference.rst @@ -117,7 +117,7 @@ Below the table, you need to adjust the :guilabel:`metric min` and :guilabel:`si .. image:: ../img/tutorial_1/after_optim.png :width: 650 -In the left panel, select the references you would like to pick (ctrl click on windows, cmd click on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`. +In the left panel, select the references you would like to pick (:kbd:`Control` + :kbd:`LMB` on linux/windows, :kbd:`CMD` + :kbd:`LMB` on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`. To convert the :file:`.tloc` file into :file:`.coords` you need to run @@ -127,6 +127,12 @@ To convert the :file:`.tloc` file into :file:`.coords` you need to run You will find coordinate file for each reference in :file:`.coords` format in the :file:`coords/` folder. +.. hint:: **Strategy: Improve your picks by refining your references** + + Manual selected references can sometimes be optimized using umaps! + + Check out the :ref:`corresponding strategy `! + 8. Scale your coordinates ^^^^^^^^^^^^^^^^^^^^^^^^^ diff --git a/docs/tutorials/tut02_cluster.rst b/docs/tutorials/tut02_cluster.rst index 3848541..8d05b76 100644 --- a/docs/tutorials/tut02_cluster.rst +++ b/docs/tutorials/tut02_cluster.rst @@ -82,6 +82,8 @@ You can use the |mag| icon to change the displayed area/zoom and the :guilabel:` :width: 650 :align: center + + 6. Save target clusters ^^^^^^^^^^^^^^^^^^^^^^^^ @@ -120,7 +122,13 @@ Below the table, you need to adjust the :guilabel:`metric min` and :guilabel:`si .. image:: ../img/tutorial_1/after_optim.png :width: 650 -In the left panel, select the references you would like to pick (ctrl click on windows, cmd click on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`. +In the left panel, select the references you would like to pick (:kbd:`Control` + :kbd:`LMB` on linux/windows, :kbd:`CMD` + :kbd:`LMB` on mac to select multiple). You can now press :guilabel:`File` -> :guilabel:`Save selected Layer(s)`. In the dialog, change the :guilabel:`Files of type` to :guilabel:`Box Manager`. Choose filename like :guilabel:`selected_coords.tloc`. Make sure that the file ending is :file:`.tloc`. + +.. hint:: **Strategy: Improve your picks by refining your cluster targets** + + Cluster targets can sometimes be optimized using umaps! + + Check out the :ref:`corresponding strategy `! To convert the :file:`.tloc` file into :file:`.coords` you need to run