sage_config.json

{
  "database": {
    "bucket_size": 32768,
    "enzyme": {
      "missed_cleavages": 1,
      "min_len": 5,
      "max_len": 40,
      "cleave_at": "KR",
      "restrict": "P",
      "c_terminal": true
    },
    "fragment_min_mz": 200.0,
    "fragment_max_mz": 1700.0,
    "peptide_min_mass": 500.0,
    "peptide_max_mass": 6000.0,
    "min_ion_index": 2,
    "static_mods": {
      "C": 57.0215
    },
    "variable_mods": {
      "M": 15.9949
    },
    "max_variable_mods": 2,
    "decoy_tag": "rev_",
    "generate_decoys": true
  },
  "fragment_tol": {
    "ppm": [
     -25,
     25
    ]
  },
  "precursor_tol": {
    "ppm": [
      -15,
      15
    ]
  },
  "isotope_errors": [
    0,
    0
  ],
  "deisotope": true,
  "chimera": false,
  "predict_rt": true,
  "min_peaks": 5,
  "max_peaks": 99999,
  "min_matched_peaks": 4,
  "max_fragment_charge": 1,
  "report_psms": 1,
  "parallel": true,
  "ignore_precursor_charge": false
}