pom.xml

<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <groupId>org.sbml.spatial</groupId>
  <artifactId>segmentation</artifactId>
  <version>1.0-SNAPSHOT</version>

  <name>segmentation</name>
  <url>https://github.com/funasoul/unetdl4j</url>

  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <maven.compiler.source>1.8</maven.compiler.source>
    <maven.compiler.target>1.8</maven.compiler.target>
  </properties>

  <dependencies>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.11</version>
      <scope>test</scope>
    </dependency>
    <!-- here I will add deeplearning4j -->
    <dependency>
      <groupId>org.deeplearning4j</groupId>
      <artifactId>deeplearning4j-core</artifactId>
      <version>1.0.0-beta7</version>
    </dependency>
    <dependency>
      <groupId>org.nd4j</groupId>
      <artifactId>nd4j-native-platform</artifactId>
      <version>1.0.0-beta7</version>
    </dependency>
    <!-- CUDA: to use GPU for training (CUDA) instead of CPU, uncomment this, and remove nd4j-native-platform -->
    <!-- Requires CUDA to be installed to use. Change the version (8.0, 9.0, 9.1) to change the CUDA version -->
    <!--
      <dependency>
      <groupId>org.nd4j</groupId>
      <artifactId>nd4j-cuda-9.2-platform</artifactId>
      <version>${dl4j-master.version}</version>
      </dependency>
    -->

    <!-- Optional, but recommended: if you use CUDA, also use CuDNN. To use this, CuDNN must also be installed -->
    <!-- See: https://deeplearning4j.konduit.ai/config/backends/config-cudnn#using-deeplearning-4-j-with-cudnn -->
    <!--
      <dependency>
      <groupId>org.deeplearning4j</groupId>
      <artifactId>deeplearning4j-cuda-9.2</artifactId>
      <version>${dl4j-master.version}</version>
      </dependency>
    -->
    <!-- zoo -->
    <dependency>
      <groupId>org.deeplearning4j</groupId>
      <artifactId>deeplearning4j-zoo</artifactId>
      <version>1.0.0-beta7</version>
    </dependency>
    <!-- ui -->
    <dependency>
      <groupId>org.deeplearning4j</groupId>
      <artifactId>deeplearning4j-ui</artifactId>
      <version>1.0.0-beta7</version>
    </dependency>
    <!-- logback -->
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-classic</artifactId>
      <version>1.2.3</version>
    </dependency>
  </dependencies>

  <build>
    <plugins>
      <!-- clean lifecycle, see https://maven.apache.org/ref/current/maven-core/lifecycles.html#clean_Lifecycle -->
      <plugin>
        <artifactId>maven-clean-plugin</artifactId>
        <version>3.1.0</version>
      </plugin>
      <!-- default lifecycle, jar packaging: see https://maven.apache.org/ref/current/maven-core/default-bindings.html#Plugin_bindings_for_jar_packaging -->
      <plugin>
        <artifactId>maven-resources-plugin</artifactId>
        <version>3.0.2</version>
      </plugin>
      <plugin>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>3.8.0</version>
      </plugin>
      <plugin>
        <artifactId>maven-surefire-plugin</artifactId>
        <version>2.22.1</version>
      </plugin>
      <plugin>
        <artifactId>maven-jar-plugin</artifactId>
        <version>3.0.2</version>
      </plugin>
      <plugin>
        <artifactId>maven-install-plugin</artifactId>
        <version>2.5.2</version>
      </plugin>
      <plugin>
        <artifactId>maven-deploy-plugin</artifactId>
        <version>2.8.2</version>
      </plugin>
      <!-- site lifecycle, see https://maven.apache.org/ref/current/maven-core/lifecycles.html#site_Lifecycle -->
      <plugin>
        <artifactId>maven-site-plugin</artifactId>
        <version>3.7.1</version>
      </plugin>
      <plugin>
        <artifactId>maven-project-info-reports-plugin</artifactId>
        <version>3.0.0</version>
      </plugin>
      <!-- maven-shade-plugin -->
      <!-- I've found that this maven-shade-plugin is required for deeplearning4j -->
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-shade-plugin</artifactId>
        <version>2.4.3</version>
        <configuration>
          <shadedArtifactAttached>true</shadedArtifactAttached>
          <shadedClassifierName>bin</shadedClassifierName>
          <createDependencyReducedPom>true</createDependencyReducedPom>
          <filters>
            <filter>
              <artifact>*:*</artifact>
              <excludes>
                <exclude>org/datanucleus/**</exclude>
                <exclude>META-INF/*.SF</exclude>
                <exclude>META-INF/*.DSA</exclude>
                <exclude>META-INF/*.RSA</exclude>
              </excludes>
            </filter>
          </filters>
        </configuration>
        <executions>
          <execution>
            <phase>package</phase>
            <goals>
              <goal>shade</goal>
            </goals>
            <configuration>
              <transformers>
                <transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
                  <resource>reference.conf</resource>
                </transformer>
                <transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer"/>
                <transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
                </transformer>
              </transformers>
            </configuration>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>
</project>