-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathOptions.hpp
180 lines (147 loc) · 6.41 KB
/
Options.hpp
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
/*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
/*
* File: Options.hpp
* Author: mattadmin
*
* Created on March 28, 2019, 9:35 AM
*/
#ifndef OPTIONS_HPP
#define OPTIONS_HPP
#include "third_party/ATL/lib/Utilities/StringUtil.hpp"
namespace mas {
enum Minimizer {
LBFGS,
LBFGS2,
BFGS,
GD,
CGD,
NM
};
enum MCMC {
NUTS,
GIBBS,
MH
};
template<typename T>
struct Options {
//minimizer options
Minimizer minimizer = LBFGS;
T tol = static_cast<T> (1e-4);
int max_iter = 5000;
int max_ls = 50;
int iprint = 10;
#ifdef MAS_ENSEMBLE
bool convergence_required = false;
#endif
//mcmc options
MCMC mcmc = MH;
int boot_strap = 5000;
int mcmc_iter = 5000;
int esemble_size = 10;
std::string config = "NA";
std::string data = "NA";
std::string output = "mas_report.json";
std::string output_directory = "NA";
bool operating_model = false;
};
void Help() {
std::cout << std::endl;
std::cout << util::center(" ███╗ ███╗ █████╗ ███████╗", 60) << std::endl;
std::cout << util::center(" ████╗ ████║██╔══██╗██╔════╝", 60) << std::endl;
std::cout << util::center(" ██╔████╔██║███████║███████╗", 60) << std::endl;
std::cout << util::center(" ██║╚██╔╝██║██╔══██║╚════██║", 60) << std::endl;
std::cout << util::center(" ██║ ╚═╝ ██║██║ ██║███████║", 60) << std::endl;
std::cout << util::center("Meta-Population Assessment System", 60) << std::endl;
std::cout << util::center("National Oceanic and Atmospheric Administration", 60) << std::endl;
std::cout << util::center("National Marine Fisheries Service", 60) << std::endl;
std::cout << std::endl;
std::cout << "-min [argument]\n";
std::cout << std::setw(35) << " " << std::left << "l-bfgs (default)\n";
std::cout << std::setw(35) << " " << std::left << "l-bfgs2 \n";
std::cout << std::setw(35) << " " << std::left << "bfgs \n";
std::cout << std::setw(35) << " " << std::left << "conjugate_gradient \n";
std::cout << std::setw(35) << " " << std::left << "gradient_descent \n";
std::cout << std::setw(35) << " " << std::left << "nelder_mead \n\n";
std::cout << "-tol [minimizer tolerance]\n";
std::cout << "-max_iter [max iterations]\n";
std::cout << "-max_ls [max line searches]\n";
std::cout << "-iprint [print interval]\n";
std::cout << "-mcmc [argument]\n";
std::cout << std::setw(35) << " " << std::left << "nuts - No u turn sampler\n";
std::cout << std::setw(35) << " " << std::left << "gibbs - Gibbs sample \n";
std::cout << std::setw(35) << " " << std::left << "mh - Metropolis-Hastings\n\n";
std::cout << "-mcmc_iter [max iterations]\n";
std::cout << "-boot_strap [max iterations]\n";
std::cout << "-config [path_to_config_file]\n";
std::cout << "-data [path_to_data_file]\n";
std::cout << "-o [output_directory]\n";
std::cout << "-help \n";
}
template<typename T>
void ParseOptions(const std::vector<std::string>& args, mas::Options<T>& options) {
for (int i = 0; i < args.size(); i++) {
if (args[i] == "-min" && args.size()> (i + 1)) {
if (args[i + 1] == "l-bfgs") {
options.minimizer = mas::LBFGS;
} else if (args[i + 1] == "l-bfgs2") {
options.minimizer = mas::LBFGS2;
} else if (args[i + 1] == "bfgs") {
options.minimizer = mas::BFGS;
} else if (args[i + 1] == "gradient_descent") {
options.minimizer = mas::GD;
} else if (args[i + 1] == "conjugate_gradient") {
options.minimizer = mas::CGD;
} else if (args[i + 1] == "nelder_mead") {
options.minimizer = mas::NM;
} else {
std::cout << "Warning: unknown minimizer type \"" << args[i + 1] << "\"\n";
}
}
#ifdef MAS_ENSEMBLE
if (args[i] == "-convergence_required") {
options.convergence_required = true;
}
#endif
if (args[i] == "-mcmc" && args.size()> (i + 1)) {
if (args[i + 1] == "nuts") {
options.mcmc = mas::NUTS;
} else if (args[i + 1] == "gibbs") {
options.mcmc = mas::GIBBS;
} else if (args[i + 1] == "mh") {
options.mcmc = mas::MH;
} else {
std::cout << "Warning: unknown mcmc routine type \"" << args[i + 1] << "\"\n";
}
}
if (args[i] == "-operating_model") {
options.operating_model = true;
}
if (args[i] == "-config" && args.size() > (i + 1)) {
options.config = args[i + 1];
}
if (args[i] == "-data" && args.size() > (i + 1)) {
options.data = args[i + 1];
}
if (args[i] == "-output" && args.size() > (i + 1)) {
options.output = args[i + 1];
}
if (args[i] == "-ensemble_size" && args.size() > (i + 1)) {
options.esemble_size = util::StringToNumber<int>(args[i + 1]);
}
if (args[i] == "-max_iter" && args.size() > (i + 1)) {
options.max_iter = util::StringToNumber<int>(args[i + 1]);
}
if (args[i] == "-max_ls" && args.size() > (i + 1)) {
options.max_ls = util::StringToNumber<int>(args[i + 1]);
}
if (args[i] == "-iprint" && args.size() > (i + 1)) {
options.iprint = util::StringToNumber<int>(args[i + 1]);
}
}
}
}
#endif /* OPTIONS_HPP */