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<html>
<title>BOSC2001 Preliminary BoF Schedule</title>
<style type="text/css"><!--
h1 { color: #336; font-style: normal; font-weight: bolder; font-family: Arial, Helvetica }
h2 { color: #336; font-style: normal; font-weight: bolder; font-family: Arial, Helvetica }
h3 { color: #336; font-style: normal; font-weight: bolder; font-family: Arial, Helvetica }
td.available { color: #888 }
-->
</style>
<body bgcolor="white">
<table border="0" cellpadding="2" cellspacing="2">
<tr>
<td colspan="2" align="left" valign="top">
<img src="bosc2001.gif" alt="BOSC 2001" width="196" height="196" hspace="10"></td>
<td valign="center" hspace=20>
<img src="title.gif" alt="Bioinformatics Open Source Conference" width="394" height="53">
<p><font face="Arial,Helvetica,Geneva,Swiss,SunSans-Regular">
<font size=+5><B>Schedule of BoF meetings</B></font>
<p><font face="Arial,Helvetica,Geneva,Swiss,SunSans-Regular">
(Tentative - pending final room details)
</tr>
</table>
<center>
<table border="1" cellpadding="2" cellspacing="2" bgcolor=#BBFF88>
<tr bgcolor=#FFFF99><th colspan=3>Day 1 (July 19, 2001)</th></tr>
<tr><th>Time</th><th>Tivolisalen (60 people)</th><th>Salon (15 people)</th></tr>
<tr><td colspan="3" align="left" bgcolor="#CCFF99"><b>During Biopathways<b></td></tr>
<tr><td align=right> 4:00 - 5:00</td>
<td class="available" align="center">(available)</td>
<td><a href="#biopython-dev-info">Biopython Developers</a></td>
</tr>
<tr><td colspan="3" align="left" bgcolor="#CCFF99"><b>During dinner break</b></td></tr>
<tr><td align=right> 5:00 - 6:00</td>
<td><a href="#biojava-info">BioJava</a></td>
<td class="available" align="center">(available)</td>
</tr>
<tr><td align=right> 6:00 - 7:00</td>
<td class="available" align="center">(available)</td>
<td class="available" align="center">(available)</td>
<tr><td colspan="3" bgcolor="#CCFF99"><b>Main BoF meetings</b></td></tr>
<tr><td align=right> 7:00 - 8:00</td>
<td><a href="#supporting-info">Supporting Open Software</a></td>
<td class="available" align="center">(available)</td>
</tr>
<tr><td align=right> 8:00 - 9:00</td>
<td><a href="#das-info">DAS</a></td>
<td><a href="#biocorba-info">BioCORBA</a></td>
</tr>
<tr><td align=right> 9:00 - 10:00</td>
<td><a href="#biopython-gen-info">Biopython</a></td>
<td><a href="#ensembl-info">Ensembl</a></td>
</tr>
</table>
<P>
<table border="1" cellpadding="2" cellspacing="2" bgcolor=#BFAAFF>
<tr bgcolor=#FFFF99><th colspan="4">Day 2 (July 20, 2001)</th>
</tr>
<tr><th>Time</th><th>Tivolisalen (60 people)</th><th>Salon (15 people)</th>
<td bgcolor=#FFFF99 rowspan="6"> </td>
<tr><td colspan="3" align="left" bgcolor=#D0BAFF><b>During Biopathways<b></td>
</tr>
<tr><td align=right> 4:00 - 5:00</td>
<td><a href="#bioagent-info">BioAgent</a></td>
<td><a href="#omnigene-info">OmniGene</a></td>
</tr>
<tr><td colspan="3" align="left" bgcolor=#D0BAFF><b>During dinner break<b></td></tr>
</tr>
<tr><td align=right> 5:00 - 6:00</td>
<td class="available" align="center">(available)</td>
<td class="available" align="center">(available)</td>
</tr>
<tr><td align=right> 6:00 - 7:00</td>
<td class="available" align="center">(available)</td>
<td class="available" align="center">(available)</td>
</tr>
<tr><td colspan="4" bgcolor=#D0BAFF><b>Main BoF meetings</b></td></tr>
<tr><th>Time</th><th>Main room</th><th>Totunden</th><th>Lounge</th></tr>
<tr><td align="right"> 7:00 - 7:45</td>
<td rowspan="2"><a href="#new-bioperl-info">New Bioperlers</a></td>
<td><a href="#novella-info">Novella</a></td>
<td rowspan="2"><a href="#decal-info">DeCAL (finishes 8pm)</a></td>
</tr>
<tr><td align="right"> 7:45 - 8:30</td>
<td><a href="#naming-info">Naming</a></td>
</tr>
<tr><td align="right"> 8:30 - 9:15</td>
<td rowspan="2"><a href="#bioperl-dev-info">Bioperl</a></td>
<td class="available" align="center">(available)</td>
<td class="available" align="center">(available)</td>
</tr>
<tr><td align="right"> 9:15 - 10:00</td>
<td class="available" align="center">(available)</td>
<td class="available" align="center">(available)</td>
</tr>
<tr><td colspan="4" bgcolor=#D0BAFF><b>Over beers</b></td></tr>
<tr><td colspan="4"><a href="#infrastructure-info">Infrastructure</a></td>
</table>
</center>
<P>
If you would like to reserve one of the available rooms or reschedule
your BoF, please contact Andrew Dalke in person or at <a
href="mailto:dalke@dalkescientific.com">dalke@dalkescientific.com</a>.
Facility information is available at
<a href="http://www.biopython.org/wiki/html/BioPython/BoscBofs.html">http://www.biopython.org/wiki/html/BioPython/BoscBofs.html</a>.
<h2>Description of Scheduled BoFs</h2>
<a name="biopython-gen-info">
<h3>Biopython (General meeting)</h3>
Organizer: Jeff Chang (<a href="mailto:jchang@smi.stanford.edu">jchang@smi.stanford.edu</a>)<br>
This is a non-technical meeting meant for people to learn more about
what <a href="http://www.biopython.org/">Biopython</a> does, put faces
to email addresses, offer help, and express needs and other ideas for
the future.
<a name="biopython-dev-info">
<h3>Biopython (Developers)</h3>
Organizer: Jeff Chang (<a href="mailto:jchang@smi.stanford.edu">jchang@smi.stanford.edu)</a><br>
This is a technical meeting for the core developers. The goal of this
meeting is to get together and hash out the API fixes that need to be
done for the 1.00 release, including integrating the Martel parsers,
cleaning up the sequence code and hashing out a system for SeqIO.
<a name="new-bioperl-info">
<h3>New Bioperlers</h3></h3>
Organizer: Peter Schattner (<a href="mailto:schattner@alum.mit.edu">schattner@alum.mit.edu</a>)<br>
A mini-introduction to <a href="http://www.bioperl.org/">Bioperl</a>
in a tutorial / presentation format, with plenty of allowance for
questions and discussion. For more information, see <a
href="http://www.bayareabioinformatics.org/20010621meeting.htm">the
writeup of a similar presentation</a> given recently.
<a name="bioperl-dev-info">
<h3>Bioperl Developers</h3>
Organizer: Jason Stajich (<a href="mailto:jason@chg.mc.duke.edu">jason@chg.mc.duke.edu</a>)<br>
Bioperl developers talking about architecture, long range plans, how
to make the toolkit more applicable to more people. Getting and
keeping more developers on board. Plans for the 1.0 release and
paper.
<a name="ensembl-info">
<h3>Ensembl for programmers</h3>
Organizer: Ewan Birney (<a href="mailto:birney@ebi.ac.uk">birney@ebi.ac.uk</a>)<br>
Discussion about <a href="http://www.ensembl.org/">Ensembl</a>.
<a name="biocorba-info">
<h3>BioCORBA/BSANE</h3>
Organizer: Juha Muilu (<a href="mailto:muilu@embl-ebi.ac.uk">muilu@embl-ebi.ac.uk</a>)<br>
We will discuss about the recent BioCORBA/BSANE integration. For more
info please have a look at <a
href="http://industry.ebi.ac.uk/~muilu/OMG/BSANE">http://industry.ebi.ac.uk/~muilu/OMG/BSANE</a>.
(This page will be updated frequently) or read the mailing list archive at <a
href="http://biocorba.org/pipermail/biocorba-l/">http://biocorba.org/pipermail/biocorba-l/</a>.
<a name="novella-info">
<h3>Novella</h3>
Organizer: Martin Senger (<a href="mailto:senger@embl-ebi.ac.uk">senger@embl-ebi.ac.uk</a>)<br>
CORBA access to the analysis. Design and implementation issues as
described in the Novella project: <a
href="http://industry.ebi.ac.uk/novella">http://industry.ebi.ac.uk/novella</a>.
<a name="das-info">
<h3>DAS</h3>
Organizer: Lincoln Stein (<a href="mailto:lstein@cshl.org">lstein@cshl.org</a>)<br>
Discussion about <a href="http://www.biodas.org">DAS</a>.
<a name="infrastructure-info">
<h3>BioInfrastructure</h3>
Organizer: Jason Stajich (<a href="mailto:jason@chg.mc.duke.edu">jason@chg.mc.duke.edu</a>)<br>
Informatics Infrastructure design - idea swapping about unified
database access and other topics which surfaced on the infrastructure
list this past year.
<a name="decal-info">
<h3>DeCAL</h3>
Organizer: Debra Goldberg (<a href="mailto:debra@cam.cornell.edu">debra@cam.cornell.edu</a>)<br>
A meeting for developers to learn more about <a
href="abstracts/talks/goldberg.html">DeCAL</a>. We
need people with many different interests, including designing
additional input data formats, visualization of output, architecture,
and algorithmic improvements. Come get involved early, so your ideas
will have the greatest impact.
<a name="supporting-info">
<h3>Supporting Open Source Software</h3>
Organizer: Tania Hide (<a href="mailto:tania@egenetics.com">tania@egenetics.com</a>)<br>
The aim of this BoF is to discuss with developers (and, if possible,
users too) what issues they face in terms of being able to support
development and use of their open source software efforts. Efforts
such as documentation (both user documentation and code
documentation), installation, user queries, etc. are examples that
readily come to mind, but it is assumed that there is more lurking
behind the scenes.
<a name="naming-info">
<h3>NamingBoF / Identifiers</h3>
Organizer: Andrew Dalke (<a href="mailto:dalke@dalkescientific.com">dalke@dalkescientific.com</a>)<br>
Come up with a standard naming scheme for <a
href="http://www.biopython.org/wiki/html/BioPython/DatabaseIdentifiers.html">database
identifiers</a> so different people and software can agree how to
exchange references to sequence record. See also the mailing list at
<a
href="http://www.biopython.org/mailman/listinfo/naming-l/">http://www.biopython.org/mailman/listinfo/naming-l/</a>.
<a name="omnigene-info">
<h3>OmniGene</h3>
Organizer: Brian Gilman (<a href="mailto:gilmanb@genome.wi.mit.edu">gilmanb@genome.wi.mit.edu</a>)<br>
This will be a technical meeting to discuss the architecture and
design for
<a href="http://www.sourceforge.net/projects/omnigene/">OmniGene</a>, a
BioInformatics middleware utilizing DAS/SOAP/JXTA/UDDI.
<a name="bioagent-info">
<h3>BioAgent</h3>
Organizer: Emanuela Merelli (<a href="mailto:merelli@camcic.unicam.it">merelli@camcic.unicam.it</a>)<br>
<a href="http://www.bioagent.net/">BioAgent</a> is an intelligent
mobile agent platform designed and developed to support people
involved in biodata manipulation. BioAgent is an open source
distributed system based on Java and XML.
<p>
We propose a meeting for people interested in extracting and
integrating biological data using an open-source system which doesn't
require all the data to be centralized on a single site.
<a name="biojava-info">
<h3>BioJava</h3>
Organizer: Thomas Down (<a href="mailto:td2@sanger.ac.uk">td2@sanger.ac.uk</a>)<br>
Discussion about <a href="http://www.biojava.org/">BioJava</a>
<HR><P>
<a href=index.html>Back to BOSC2001 home page</a>
<P>
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Last modified: Tue Jul 10 18:21:55 PDT 2001
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</body></html>