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schedule.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN">
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<HEAD>
<META HTTP-EQUIV="CONTENT-TYPE" CONTENT="text/html; charset=iso-8859-15">
<TITLE></TITLE>
<META NAME="GENERATOR" CONTENT="OpenOffice.org 1.1.0 (Linux)">
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<TD WIDTH=89 HEIGHT=24 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD WIDTH=295 ALIGN=LEFT VALIGN=TOP>Thursday July 29th</TD>
<TD WIDTH=320 ALIGN=LEFT VALIGN=TOP>Friday July 30th</TD>
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<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP SDVAL="0.375" SDNUM="1033;0;HH:MM:SS AM/PM">09:00:00 am</TD>
<TD ALIGN=LEFT VALIGN=TOP>Keynote: Wolfgang Huber:<br /><a href="http://www.bioconductor.org/">Bioconductor Project</a></TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#senger">Martin Senger</a>: <a href="presentations/LSID-BOSC-presentation.pdf">slides</a><br /> Life Sciences Identifiers. Finally?</TD>
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<TD HEIGHT=34 ALIGN=LEFT VALIGN=TOP SDVAL="0.395833333333333" SDNUM="1033;0;HH:MM:SS AM/PM">09:30:00 am</TD>
<TD ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#price">Peter Rice</a>: <a href="presentations/BOSC04-EMBOSS.pdf">slides</a><br /> EMBOSS</TD>
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<TD HEIGHT=48 ALIGN=LEFT VALIGN=TOP SDVAL="0.416666666666667" SDNUM="1033;0;HH:MM:SS AM/PM">10:00:00 am</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#mungall">Chris Mungall</a>: <a href="presentations/biomake.pdf">slides</a><br /> BioMake</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#vanheusen">Peter van Heusden</a>: <a href="presentations/Heusden_SW_validation_BOSC_2004.pdf">slides</a><br /> Software Validation</TD>
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<TD HEIGHT=49 ALIGN=LEFT VALIGN=TOP SDVAL="0.4375" SDNUM="1033;0;HH:MM:SS AM/PM">10:30:00 am</TD>
<TD ALIGN=LEFT VALIGN=TOP>Coffee<br /><a href="accepted_abstracts.html#arek">Arek Kasprzyk</a>:<br /> BioMart</TD>
<TD ALIGN=LEFT VALIGN=TOP>Coffee:<br /> Annotation Database Presentations:</TD>
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<TD HEIGHT=42 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#lstein">Lincoln Stein</a>: <a href="presentations/gmod_bosc_2004.ppt">slides</a><br /> GMOD</TD>
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<TD HEIGHT=48 ALIGN=LEFT VALIGN=TOP SDVAL="0.458333333333333" SDNUM="1033;0;HH:MM:SS AM/PM">11:00:00 am</TD>
<TD ALIGN=LEFT><a href="accepted_abstracts.html#katayama">Toshiaki Katayama</a>: <a href="presentations/toshiakiBioRubi.pdf">slides</a><br /> BioRuby + KEGG API + KEGG DAS</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#birney">Ewan Birney</a>:<br /> Ensembl</TD>
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<TD HEIGHT=50 ALIGN=LEFT VALIGN=TOP><BR></TD>
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<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#fischer">Steve Fischer</a>:<br /> GUS</TD>
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<TD HEIGHT=24 ALIGN=LEFT VALIGN=TOP SDVAL="0.479166666666667" SDNUM="1033;0;HH:MM:SS AM/PM">11:30:00 am</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#levinson">Levinson, Gene (NIH/NCI)</a>: <a href="presentations/Levinson_Gene_cabioperl_bosc2004.pdf">slides</a><br /> caBIOperl</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#gilbert">James Gilbert</a>: <a href="presentations/otter.pdf">slides</a><br />The Otter Annotation System</TD>
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<TD HEIGHT=24 ALIGN=LEFT VALIGN=TOP SDVAL="0.5" SDNUM="1033;0;HH:MM:SS AM/PM">12:00:00 pm</TD>
<TD ALIGN=LEFT VALIGN=TOP>Lunch</TD>
<TD ALIGN=LEFT VALIGN=TOP>Lunch</TD>
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<TD HEIGHT=51 ALIGN=LEFT VALIGN=TOP SDVAL="0.541666666666667" SDNUM="1033;0;HH:MM:SS AM/PM">01:00:00 pm</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#gessler">Lincoln Stein</a>: <a href="presentations/moby_glasgow.ppt">slides</a><br /> Semantic MOBY </TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#dumontier">Michel Dumontier</a>: <a href="presentations/Dumontier_NCBI_cpp_Toolkit_BOSC.pdf">slides</a><br /> NCBI C++ Toolkit</TD>
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<TD HEIGHT=49 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#tdown">Thomas Down</a>:<br /> BioJava</TD>
<TD ALIGN=LEFT VALIGN=TOP><a href="accepted_abstracts.html#hermjakob">Henning Hermjakob</a>: <a href="presentations/PSI-MI_and_IntAct.pdf">slides</a><br /> The PSI MI standard </TD>
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<TD HEIGHT=24 ALIGN=LEFT VALIGN=TOP SDVAL="0.583333333333333" SDNUM="1033;0;HH:MM:SS AM/PM">02:00:00 pm</TD>
<TD ALIGN=LEFT VALIGN=TOP>Lightning talks and Demos<br /></TD>
<TD ALIGN=LEFT VALIGN=TOP>Lightning talks</TD>
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<TD HEIGHT=68 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Darin London:<br/>MartShell – A Commandline, Interactive Shell interface to BioMart</TD>
<TD ALIGN=LEFT VALIGN=TOP>Lawrence Lau:<br/>Open Source Software Funding Mechanisms: Promises and Pitfalls</TD>
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<TD HEIGHT=68 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Frank Gibbons: <a href="presentations/BOSC_FrankGibbons.pdf">slides</a><br/>BioGraphNet, A Distributed Forum for Heterogeneous Biological Networks</TD>
<TD ALIGN=LEFT VALIGN=TOP>Craig Melsopp: <a href="presentations/ensj_bosc.pdf">slides</a><br/>Ensj Library</TD>
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<TR>
<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Matthew Pocock: <a href="presentations/bosc04BJV2.pdf">slides</a><br/>BioJava Version 2</TD>
<TD ALIGN=LEFT VALIGN=TOP>Rob Clack: <a href="presentations/2004_08_10_Clack.pdf">slides</a><br/>ZMap: Annotaing Genomic Data from Various Sources</TD>
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<TD HEIGHT=46 ALIGN=LEFT><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Brook G. Milligan:<br/>Multiplatform Scientific Computing Environment</TD>
<TD ALIGN=LEFT VALIGN=TOP>Kazuharu Arakawa: <a href="presentations/BOSC2004G-language.pdf">slides</a><br/>G-language Genome Analysis Environment</TD>
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<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT>Chad Matsalla: <a href="presentations/Matsalla_BOSC_2004.pdf">slides</a><br/>Model Centric Architecture</TD>
<TD ALIGN=LEFT>Siu-wai Leung: <a href="presentations/sui-weng04.pdf">slides</a><br/>Bio# (Bio-Sharp)</TD>
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<TR>
<TD HEIGHT=66 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT>Michael Watson: <a href="presentations/michaelWatson.pdf">slides</a><br/>Systems Biology Integration</TD>
<TD ALIGN=LEFT VALIGN=TOP>Bob Freeman:<br/>Magic Tools: A Suite of Programs to Aid in Gene Discovery and Expression Analysis via EST/Genome Sequencing and Microarray Analysis</TD>
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<TD HEIGHT=24 ALIGN=LEFT VALIGN=TOP SDVAL="0.625" SDNUM="1033;0;HH:MM:SS AM/PM">03:00:00 pm</TD>
<TD ALIGN=LEFT VALIGN=TOP>Coffee:<br/>Lightning talks and Demos</TD>
<TD ALIGN=LEFT VALIGN=TOP>Coffee:<br/>Lightning talks and Demos</TD>
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<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP SDNUM="1033;0;HH:MM:SS AM/PM"><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Matthew Pocock: <a href="presentations/Taverna.pdf">slides</a><br/>Taverna: Workflow Enactor for Bioinformatics</TD>
<TD ALIGN=LEFT VALIGN=TOP>Brian O'Connor:<br/>Turnkey, A Generic Data Visualization Tool</TD>
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<TR>
<TD HEIGHT=68 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Rasmus Fogh:<br/>Data Modeling, Automatic Code Generation, and a Data Standard for Structural Biology</TD>
<TD ALIGN=LEFT VALIGN=TOP>Hidemasa Bono: <a href="presentations/BOSC2004bono.pdf">slides</a><br/>SayaMatcher</TD>
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<TR>
<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Francois Pepin: <a href="presentations/bosc2004_bias.pdf">slides</a><br/>BIAS: Bioinformatics Integrated Application Software</TD>
<TD ALIGN=LEFT VALIGN=TOP>Karsten Hokamp:<br/>ArrayPipe and ProbeLynx - Joining Forces for Improved Microarray Analysis</TD>
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<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Jennifer Gardy: <a href="presentations/Gardy-2004-BOSC-LightningTalk.pdf">slides</a><br/>PSORT-B: An open-source meta-analysis tool for protein localization prediction.</TD>
<TD ALIGN=LEFT VALIGN=TOP>Chris Zmasek:<br/>Development of an XML for Describing annotated Phylogenetic Trees</TD>
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<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP SDNUM="1033;0;HH:MM:SS AM/PM"><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Chris Mungall: <a href="presentations/biostag.pdf">slides</a><br/>BioStag: A SQL Template Resource for Bioinformatics Databases</TD>
<TD ALIGN=LEFT VALIGN=TOP>Mark Poolman:<br/> Metabolic Modelling of 'Omic-Scale Systems</TD>
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<TD HEIGHT=46 ALIGN=LEFT VALIGN=TOP><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Marc Dumontier:<br/>Biomolecular Interaction Network Database (BIND)</TD>
<TD ALIGN=LEFT VALIGN=TOP>Michael Hoffman: <a href="presentations/Poly.pdf">slides</a><br/>Poly: rapid development of embarrassingly parallelizable applications</TD>
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<TD HEIGHT=23 ALIGN=RIGHT SDVAL="0.666666666666667" SDNUM="1033;0;HH:MM:SS AM/PM">04:00:00 pm</TD>
<TD ALIGN=LEFT VALIGN=TOP>Mark Hoebeke: <a href="presentations/mhoebeke_mugen.pdf">slides</a><br/>Exploring genomes and analysis results with MuGeN</TD>
<TD ALIGN=LEFT VALIGN=TOP>Richard Smith: <a href="presentations/RichardSmithBOSC_2004_intermine.pdf">slides</a><br/>InterMine: generic object integration and warehousing</TD>
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<TD HEIGHT=23 ALIGN=LEFT><BR></TD>
<TD ALIGN=LEFT VALIGN=TOP>Angela Baldo: <a href="presentations/angelaBaldo.pdf">slides</a><br/>Using the SEAN package to predict SNPs in tomatoes</TD>
<TD ALIGN=LEFT VALIGN=TOP>Subrata Bose:<br/>Use of AI for Bioinformatics knowledge discovery</TD>
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<TD ALIGN=LEFT VALIGN=TOP>Ian Donaldson: <a href="presentations/SeqHound.pdf">slides</a><br/>SeqHound: a bioinformatics programming platform</TD>
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<TD HEIGHT=24 ALIGN=RIGHT SDVAL="0.708333333333333" SDNUM="1033;0;HH:MM:SS AM/PM">05:00:00 pm</TD>
<TD ALIGN=LEFT VALIGN=TOP>BOFs</TD>
<TD ALIGN=LEFT VALIGN=TOP>BOFs</TD>
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<TD ALIGN=LEFT VALIGN=TOP>BOFs</TD>
<TD ALIGN=LEFT VALIGN=TOP>BOFs</TD>
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