CMakeLists.txt

INCLUDE(${QT_USE_FILE})
INCLUDE_DIRECTORIES(${CMAKE_BINARY_DIR})
# Project name. Should be the same as the project directory name and
# will become the name of the binary target.
SET( PROJECT_NAME "MRISIM")
SET( BATCH_PROJECT_NAME "MRIBatch")

QT4_WRAP_UI(UI_SOURCE
  MRIUI.ui
)
QT4_WRAP_CPP(MOC_SOURCE
  MRIUI.h
)


INCLUDE (FindFFTW.cmake)
IF (FFTW_FOUND)
  INCLUDE_DIRECTORIES(${FFTW_INCLUDE_DIR})
ELSE (FFTW_FOUND)
  MESSAGE ("WARNING: Could not find fftw - depending targets will be disabled.")
ENDIF (FFTW_FOUND)


#SET (ENABLE_CUDA 0)

IF (CUDA_FOUND) 
  CUDA_ADD_LIBRARY("CUDA_KERNELS"
    Science/CUDAKernel.cu
    )
  ADD_DEFINITIONS(-DENABLE_CUDA)
  SET (CUDA_KERNEL_LINK "CUDA_KERNELS")
ENDIF(CUDA_FOUND)

IF (OPENCL_LIBRARY)
  ADD_DEFINITIONS(-DENABLE_OPENCL)
  SET(OPENCL_SOURCES  
    Science/OpenCLKernel.h
    Science/OpenCLKernel.cpp
    )
  SET(OPENCL_LINK Extensions_OpenCL)
ENDIF (OPENCL_LIBRARY)

SET (MRI_SOURCES 

  MRICommandLine.h
  MRICommandLine.cpp

  Resources/Phantom.h
  Resources/Phantom.cpp
  Resources/IPhantomBuilder.h
  Resources/SimplePhantomBuilder.h
  Resources/SimplePhantomBuilder.cpp
  Resources/TestPhantomBuilder.h
  Resources/TestPhantomBuilder.cpp
  Resources/SheppLoganBuilder.h
  Resources/SheppLoganBuilder.cpp
  Resources/Sample3DTexture.h
  Resources/Sample3DTexture.cpp

  Science/Science.cpp
  Science/MRISim.h
  Science/MRISim.cpp

  ${OPENCL_SOURCES}

  Science/CPUKernel.h
  Science/CPUKernel.cpp
  Science/SpinEchoSequence.h
  Science/SpinEchoSequence.cpp
  Science/GradientEchoSequence.h
  Science/GradientEchoSequence.cpp
  Science/EchoPlanarSequence.h
  Science/EchoPlanarSequence.cpp
  Science/ListSequence.h
  Science/ListSequence.cpp
  Science/IRFCoil.h
  Science/TestRFCoil.h
  Science/TestRFCoil.cpp

  Science/ExcitationPulseSequence.h
  Science/ExcitationPulseSequence.cpp

  Science/CartesianSampler.h
  Science/CartesianSampler.cpp

  Science/IFFT.h
  Science/CPUFFT.h
  Science/CPUFFT.cpp

  Science/TimeLogger.h
  Science/TimeLogger.cpp
)

# Project source code list
SET( GUI_SOURCES
  # Add all the cpp source files here
  # main.cpp
  ${MRI_SOURCES}

  Resources/MINCResource.h
  Resources/MINCResource.cpp

  Resources/MINCPhantomBuilder.h
  Resources/MINCPhantomBuilder.cpp

  Display/CanvasSwitch.h
  Display/CanvasSwitch.cpp
  Display/OpenGL/PhantomCanvas.h
  Display/OpenGL/PhantomCanvas.cpp
  Display/OpenGL/SpinCanvas.h
  Display/OpenGL/SpinCanvas.cpp
  Display/OpenGL/WindowCanvas.h
  Display/OpenGL/WindowCanvas.cpp

  Science/RFTester.h
  Science/RFTester.cpp

  Science/UniformSampler.h
  Science/UniformSampler.cpp
  Science/FrequencyData.h
  Science/FrequencyData.cpp


  # Science/ImageFFT.h
  # Science/ImageFFT.cpp
  # Science/CartesianFFT.h
  # Science/CartesianFFT.cpp

  # Science/FFTData.h
  # Science/FFTData.cpp


#   Scene/SpinNode.h
#   Scene/SpinNode.cpp

#   Science/BlochTest.h
#   Science/BlochTest.cpp

#   Science/OpenCLTest.h
#   Science/OpenCLTest.cpp

  ${MOC_SOURCE}
  ${UI_SOURCE}
  MRIUI.cpp
)

# Include needed to use SDL under Mac OS X
# IF(APPLE)
#   SET(PROJECT_SOURCES ${PROJECT_SOURCES}  ${SDL_MAIN_FOR_MAC})
# ENDIF(APPLE)

# Project executable
ADD_EXECUTABLE(${PROJECT_NAME}
  ${GUI_SOURCES}
)

# Project dependencies
TARGET_LINK_LIBRARIES(${PROJECT_NAME}
  # Core library dependencies
  OpenEngine_Core
  OpenEngine_Logging
  OpenEngine_Display
  OpenEngine_Devices
  OpenEngine_Scene
  # Extension dependencies
  Extensions_Qt
  Extensions_MeshUtils
  Extensions_SetupHelpers  
  Extensions_Plotting
  Extensions_MathGL
  Extensions_Wall
  Extensions_SDLFont
  Extensions_Inspection
  Extensions_InspectionWidget
  Extensions_PropertyTree
  ${OPENCL_LINK}
  minc2 # ugly hack... use a find script
  ${FFTW_LIBRARIES}
  ${CUDA_KERNEL_LINK}
)


# --- BATCH EXECUTABLE ---
SET( BATCH_SOURCES
  # Add all the cpp source files here
  # main.cpp
  ${MRI_SOURCES}

  MRIBatch.cpp
)

ADD_EXECUTABLE(${BATCH_PROJECT_NAME}
  ${BATCH_SOURCES}
)


ADD_EXECUTABLE(RawConverter
  tools/convmri.c
)


# Project dependencies
TARGET_LINK_LIBRARIES(${BATCH_PROJECT_NAME}
  # Core library dependencies
  OpenEngine_Core
  OpenEngine_Logging
  OpenEngine_Resources
  # Extension dependencies
  Extensions_PropertyTree
  ${OPENCL_LINK}
  ${FFTW_LIBRARIES}
  ${CUDA_KERNEL_LINK}
)