From 18399a46a0d904d698932a2e98608d274fc736d6 Mon Sep 17 00:00:00 2001
From: Shifu Chen <chen@haplox.com>
Date: Mon, 28 Nov 2016 13:52:59 +0800
Subject: [PATCH] display AfterQC version in report

---
 after.py        | 3 ++-
 preprocesser.py | 1 +
 qcreporter.py   | 4 ++++
 3 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/after.py b/after.py
index 6f7caf4..1b8f814 100755
--- a/after.py
+++ b/after.py
@@ -9,7 +9,7 @@
 import copy
 from util import *
 
-AFTERQC_VERSION = "0.8.1"
+AFTERQC_VERSION = "0.9.0"
 
 def parseCommand():
     usage = "Automatic Filtering, Trimming, Error Removing and Quality Control for Illumina fastq data \n\nSimplest usage:\ncd to the folder containing your fastq data, run <python after.py>"
@@ -189,6 +189,7 @@ def main():
         print('cannot get python version, please make sure you are using python2')
     
     (options, args) = parseCommand()
+    options.version = AFTERQC_VERSION
     options.trim_pair_same = parseBool(options.trim_pair_same)
     options.draw = parseBool(options.draw)
     options.store_overlap = parseBool(options.store_overlap)
diff --git a/preprocesser.py b/preprocesser.py
index 20cbfc3..83fff7b 100755
--- a/preprocesser.py
+++ b/preprocesser.py
@@ -713,6 +713,7 @@ def run(self):
 
         self.addFiguresToReport(reporter)
         reporter.setStat(stat)
+        reporter.setVersion(self.options.version)
         reporter.output(os.path.join(qc_dir, "report.html"))
 
     def addFiguresToReport(self, reporter):
diff --git a/qcreporter.py b/qcreporter.py
index 42b60c2..58e54b3 100644
--- a/qcreporter.py
+++ b/qcreporter.py
@@ -17,6 +17,9 @@ def addFigure(self, title, figure, div='', summary=''):
     def setStat(self, stat):
         self.stat = stat
 
+    def setVersion(self, ver):
+        self.version = ver
+
     def output(self, filename):
         io = open(filename, "w")
         self.outputHeader(io)
@@ -86,6 +89,7 @@ def outputSummary(self, io):
         io.write("<div class='figure-div'>\n")
         io.write("<div class='figure-title'><a name='summary'>1, AfterQC summary</a></div>\n")
         io.write("<table class='summary-table'>\n")
+        self.outputRow(io, "AfterQC Version:", self.version)
         self.outputRow(io, "sequencing:", self.getSequencing())
         if self.stat["command"]["read2_file"] != None:
             self.outputRow(io, "estimated seq error:", str(self.stat["overlap"]["error_rate"]*100) + "%")