Day 3: Advanced single cell analyses: Experimental design, genetic analyses and introduction to spatial single cell data
Lectures on
- Experimental design
- Single cell genetic analyses
- Introduction to methods to generate single cell spatially resolved data
Lectures on
- Methods for single cell spatially resolved data
Practical workshop
- Analysis of Visium and MERFISH data in Python
Instructions
- Installation instructions
- Downloading Visium data: follow either the instructions in the analysis notebook or use the dedicated Visium download script
- Downloading MERFISH data: use the dedicated MERFISH download script