README.md

SPAVA

Studying SPAtial PAtterns of VAriations with VAriationals Autoencoders.

Envs

name	type
	on demand
	on demand

Tests

name	type
	on demand
	on demand

Analyses

IMC Jackson-Fischer dataset

name	type
	on demand
	on demand (no Juptyer)
	on demand
	on demand
Train expression VAE	no workflow
	on demand
Train image expression VAE	no workflow
	on demand
Train image expression PCA VAE	no workflow
	on demand
Train image expression conv VAE	no workflow
	on demand

IMC Jeongbin dataset

name	type
	on demand

Visium mouse brain dataset

name	type
	on demand
	on demand
	on demand
	on demand
	on demand
Train expression VAE	no workflow
	on demand
Train image expression conv VAE 32	no workflow
	on demand
Train image expression conv VAE 64	no workflow
	on demand

Visium endometrium dataset

name	type
	on demand
	on demand
	on demand
	on demand

scvi

name	type
	on demand (model trained manually)
	on demand (model trained manually)

Visium endometrium dataset

name	type