NAMESPACE

# Generated by roxygen2: do not edit by hand

export(download_datasets_by_data_package)
export(get_datasets_by_data_package)
export(get_dms_job_records)
export(get_job_records_by_dataset_package)
export(get_output_folder_for_job_and_tool)
export(get_results_for_multiple_jobs)
export(get_results_for_multiple_jobs.dt)
export(get_results_for_single_job)
export(get_results_for_single_job.dt)
export(get_tool_output_files_for_job_number)
export(get_url_from_dir_and_file)
export(is_PNNL_DMS_connection_successful)
export(make_id_to_quant_scan_link_table)
export(make_id_to_quant_scan_link_table_for_dataset)
export(path_to_FASTA_used_by_DMS)
export(path_to_study_design_from_DMS)
export(read_AScore_results_from_DMS)
export(read_MSstats_from_MSFragger_job)
export(read_generic_job_from_DMS)
export(read_masic_data_from_DMS)
export(read_msfragger_data_from_DMS)
export(read_msgf_data_from_DMS)
export(read_study_design_from_DMS)
export(write_study_design_to_DMS)
importFrom(DBI,dbClearResult)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbFetch)
importFrom(DBI,dbSendQuery)
importFrom(MSnID,MSnID)
importFrom(MSnID,`psms<-`)
importFrom(MSnID,convert_msgf_output_to_msnid)
importFrom(MSnID,psms)
importFrom(MSnID,read_mzIDs)
importFrom(MSnSet.utils,read_FragPipe_LFQ)
importFrom(MSnbase,MSnSet)
importFrom(RCurl,url.exists)
importFrom(RPostgres,Postgres)
importFrom(curl,curl_download)
importFrom(data.table,`:=`)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(data.table,setnames)
importFrom(dplyr,"%>%")
importFrom(dplyr,any_of)
importFrom(dplyr,bind_rows)
importFrom(dplyr,contains)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,mutate)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,starts_with)
importFrom(dplyr,ungroup)
importFrom(glue,glue)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(pbapply,pbwalk)
importFrom(plyr,ldply)
importFrom(plyr,llply)
importFrom(readr,cols)
importFrom(readr,read_tsv)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(stringr,str_match)
importFrom(stringr,str_match_all)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(tibble,column_to_rownames)
importFrom(tibble,enframe)
importFrom(tidyr,all_of)
importFrom(tidyr,fill)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,separate_rows)
importFrom(tidyr,unite)
importFrom(tidyr,unnest)
importFrom(utils,download.file)
importFrom(utils,read.delim)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,unzip)
importFrom(utils,write.table)