oma-standalone-1.0.6_install

#!/usr/bin/env bash

###############################################
# Installing OMA standalone
#
# by Javier Herrero, 2016 
#

APPNAME=${APPNAME:-oma-standalone}
VERSION=${VERSION:-1.0.6}
INSTALL_PREFIX=${INSTALL_PREFIX:-/shared/ucl/depts/cancer/apps/$APPNAME/$VERSION}
MD5=${MD5:-6f7a24817d94902d2de7ecb451ed55af}
SHA1=${SHA1:-REPLACE}
SRC_ARCHIVE=${SRC_ARCHIVE:-http://omabrowser.org/standalone/OMA.${VERSION}.tgz}

# Use Intel defate library
NATIVE_LIB=${NATIVE_LIB:-NO}

set -e

export PATH=$INSTALL_PREFIX/bin:$PATH

mkdir -p $INSTALL_PREFIX

cd $INSTALL_PREFIX

wget $SRC_ARCHIVE

CHECKSUM=`md5sum OMA.${VERSION}.tgz | awk '{print $1}'`

if [ "$MD5" == "$CHECKSUM" ]
then
  tar xvzf OMA.${VERSION}.tgz
  cd OMA.${VERSION}
  ./install.sh $INSTALL_PREFIX
else
  echo "Hash mismatch."
  echo "Expected: $MD5"
  echo "Got: $CHECKSUM"
fi