diff --git a/modules/local/amrfinderplus.nf b/modules/local/amrfinderplus.nf index 2d21f9a..e921e20 100644 --- a/modules/local/amrfinderplus.nf +++ b/modules/local/amrfinderplus.nf @@ -2,7 +2,7 @@ process amrfinderplus { tag "${meta.id}" label "process_high" publishDir params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/ncbi-amrfinderplus:3.12.8-2024-05-02.2' + container 'staphb/ncbi-amrfinderplus:3.12.8-2024-07-22.1' errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} time '30m' diff --git a/modules/local/elgato.nf b/modules/local/elgato.nf index 22dadaa..d5e33a8 100755 --- a/modules/local/elgato.nf +++ b/modules/local/elgato.nf @@ -2,7 +2,7 @@ process elgato { tag "${meta.id}" label "process_medium" publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/elgato:1.18.2' + container 'staphb/elgato:1.19.0' time '10m' errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} diff --git a/modules/local/mlst.nf b/modules/local/mlst.nf index 352e0c3..5f0701c 100644 --- a/modules/local/mlst.nf +++ b/modules/local/mlst.nf @@ -2,7 +2,7 @@ process mlst { tag "${meta.id}" label "process_medium" publishDir params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/mlst:2.23.0-2024-08-01' + container 'staphb/mlst:2.23.0-2024-09-01' maxForks 10 errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} time '10m' diff --git a/nextflow.config b/nextflow.config index 72d59e1..621fb64 100644 --- a/nextflow.config +++ b/nextflow.config @@ -3,7 +3,7 @@ manifest { author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Grandeur' mainScript = 'main.nf' - version = '4.5.24219' + version = '4.5.24250' defaultBranch = 'main' description = 'Grandeur is short-read de novo assembly pipeline with serotyping.' nextflowVersion = '!>=22.10.1'