diff --git a/.Rbuildignore b/.Rbuildignore
index 53a2f4f..7ace95b 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -1,2 +1,5 @@
 ^\.github$
 ^src/\.cargo$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
diff --git a/.gitignore b/.gitignore
index 7b732e7..7c06555 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,3 +3,4 @@
 .RData
 .Ruserdata
 .DS_Store
+docs
diff --git a/vignettes/vesalius.Rmd b/vignettes/vesalius.Rmd
index afb1848..ca0a310 100644
--- a/vignettes/vesalius.Rmd
+++ b/vignettes/vesalius.Rmd
@@ -424,11 +424,11 @@ From here, we can treat this new object as a frech data sets with new coordinate
 matched <- generate_embeddings(matched,
     dim_reduction = "PCA",
   nfeatures = 200, 
-  verbose = FALSE) %>%
+  verbose = FALSE)
 matched <- regularise_image(matched, lambda = 1)
 matched <- smooth_image(matched, sigma = 5, iter = 10)
 matched <- equalize_image(matched, sleft = 5, sright = 5)
-matched <- segment_image(col_resolution = 2)
+matched <- segment_image(matched,col_resolution = 2)
 ```
 We can then look at the resulting embeddings