Dockerfile

FROM python:3.9.1

RUN apt-get update
RUN apt-get install zip \
    octave \
    #octave-odepkg \
    octave-control \
    octave-image \
    octave-io \
    octave-quaternion \
    octave-signal \
    gnuplot \
    r-base r-base-dev libzmq3-dev -y \
    nodejs -y \
    pandoc \
    texlive-xetex \
    texlive-fonts-recommended \
    texlive-generic-recommended -y


RUN curl -sL https://deb.nodesource.com/setup_15.x | bash -
RUN apt-get install -y nodejs

RUN wget https://cmake.org/files/v3.19/cmake-3.19.2-Linux-x86_64.sh \
    && chmod 775 ./cmake-3.19.2-Linux-x86_64.sh \
    && ./cmake-3.19.2-Linux-x86_64.sh --skip-license

RUN pip3 install --upgrade pip

RUN pip3 install \
    jupyterhub \
    notebook \
    jupyterlab-server \
    jupyterlab \
    numpy \
    pandas \
    ipywidgets \
    traitlets \
    matplotlib \
    scipy \
    bqplot \
    octave_kernel \
    sympy \
    pytz \
    scikit-aero \
    xlrd \
    ipyvolume \
    h5py \
    pyzmq \
    ipyfilechooser \
    jax \
    jaxlib \
    uncertainties \
    nbconvert \
    xarray \
    seaborn \
    jupyter-book \
    jhsingle-native-proxy \
    xeus-python \
    ipympl \
    ipyleaflet \
    mplleaflet \ 
    gpxpy

RUN pip3 install voila
RUN pip3 install cvxpy

RUN pip3 install torch===1.7.1 torchvision===0.8.2 -f https://download.pytorch.org/whl/torch_stable.html


#RUN pip3 install https://github.com/ipython-contrib/jupyter_contrib_nbextensions/tarball/master


RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager
RUN jupyter labextension install bqplot
RUN jupyter serverextension enable jupyterlab
RUN jupyter labextension install @jupyterlab/debugger

RUN git clone https://github.com/acelere/IRKernel_install_script
RUN Rscript ./IRKernel_install_script/rk_install.r

# create a user, since we don't want to run as root
RUN useradd -m jovyan
RUN usermod -a -G users jovyan
# Add user to staff to enable R packages install
RUN usermod -a -G staff jovyan
ENV HOME=/home/jovyan
WORKDIR $HOME

USER jovyan



RUN mkdir /home/jovyan/work
RUN mkdir /home/jovyan/work/data
RUN chown -R jovyan /home/jovyan/work

RUN git -C /home/jovyan clone https://github.com/acelere/Flight-Test-Analysis-Tool

CMD ["jupyterhub-singleuser"]