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Copy path02_4v_4v_FTC_60uM.xml
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02_4v_4v_FTC_60uM.xml
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<?xml version="1.0" encoding="UTF-8"?>
<!-- Created by BioNetGen 2.4.0 -->
<sbml xmlns="http://www.sbml.org/sbml/level3" level="3" version="1">
<model id="4v_4v_FTC_60uM">
<ListOfParameters>
<Parameter id="kd" type="Constant" value="3500"/>
<Parameter id="kon" type="Constant" value="0.028571"/>
<Parameter id="koff" type="Constant" value="100"/>
<Parameter id="_rateLaw1" type="Constant" value="0"/>
<Parameter id="_rateLaw2" type="Constant" value="0"/>
<Parameter id="_rateLaw3" type="Constant" value="0"/>
<Parameter id="_rateLaw4" type="Constant" value="0"/>
</ListOfParameters>
<ListOfMoleculeTypes>
<MoleculeType id="Source">
<ListOfComponentTypes>
<ComponentType id="s"/>
</ListOfComponentTypes>
</MoleculeType>
<MoleculeType id="poly_A">
<ListOfComponentTypes>
<ComponentType id="a1"/>
<ComponentType id="a2"/>
<ComponentType id="a3"/>
<ComponentType id="a4"/>
</ListOfComponentTypes>
</MoleculeType>
<MoleculeType id="poly_B">
<ListOfComponentTypes>
<ComponentType id="b1"/>
<ComponentType id="b2"/>
<ComponentType id="b3"/>
<ComponentType id="b4"/>
</ListOfComponentTypes>
</MoleculeType>
</ListOfMoleculeTypes>
<ListOfCompartments>
</ListOfCompartments>
<ListOfSpecies>
<Species id="S1" concentration="1.0" name="Source(s)">
<ListOfMolecules>
<Molecule id="S1_M1" name="Source">
<ListOfComponents>
<Component id="S1_M1_C1" name="s" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</Species>
<Species id="S2" concentration="600" name="poly_A(a1,a2,a3,a4)">
<ListOfMolecules>
<Molecule id="S2_M1" name="poly_A">
<ListOfComponents>
<Component id="S2_M1_C1" name="a1" numberOfBonds="0"/>
<Component id="S2_M1_C2" name="a2" numberOfBonds="0"/>
<Component id="S2_M1_C3" name="a3" numberOfBonds="0"/>
<Component id="S2_M1_C4" name="a4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</Species>
<Species id="S3" concentration="600" name="poly_B(b1,b2,b3,b4)">
<ListOfMolecules>
<Molecule id="S3_M1" name="poly_B">
<ListOfComponents>
<Component id="S3_M1_C1" name="b1" numberOfBonds="0"/>
<Component id="S3_M1_C2" name="b2" numberOfBonds="0"/>
<Component id="S3_M1_C3" name="b3" numberOfBonds="0"/>
<Component id="S3_M1_C4" name="b4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</Species>
</ListOfSpecies>
<ListOfReactionRules>
<ReactionRule id="RR1" name="create_poly_A" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR1_RP1">
<ListOfMolecules>
<Molecule id="RR1_RP1_M1" name="Source">
<ListOfComponents>
<Component id="RR1_RP1_M1_C1" name="s" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR1_PP1">
<ListOfMolecules>
<Molecule id="RR1_PP1_M1" name="Source">
<ListOfComponents>
<Component id="RR1_PP1_M1_C1" name="s" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR1_PP2">
<ListOfMolecules>
<Molecule id="RR1_PP2_M1" name="poly_A">
<ListOfComponents>
<Component id="RR1_PP2_M1_C1" name="a1" numberOfBonds="0"/>
<Component id="RR1_PP2_M1_C2" name="a2" numberOfBonds="0"/>
<Component id="RR1_PP2_M1_C3" name="a3" numberOfBonds="0"/>
<Component id="RR1_PP2_M1_C4" name="a4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR1_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="_rateLaw1"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR1_RP1_M1" targetID="RR1_PP1_M1"/>
<MapItem sourceID="RR1_RP1_M1_C1" targetID="RR1_PP1_M1_C1"/>
</Map>
<ListOfOperations>
<Add id="RR1_PP2_M1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR2" name="decay_poly_A" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR2_RP1">
<ListOfMolecules>
<Molecule id="RR2_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR2_RP1_M1_C1" name="a1" numberOfBonds="0"/>
<Component id="RR2_RP1_M1_C2" name="a2" numberOfBonds="0"/>
<Component id="RR2_RP1_M1_C3" name="a3" numberOfBonds="0"/>
<Component id="RR2_RP1_M1_C4" name="a4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
</ListOfProductPatterns>
<RateLaw id="RR2_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="_rateLaw2"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR2_RP1_M1"/>
<MapItem sourceID="RR2_RP1_M1_C1"/>
<MapItem sourceID="RR2_RP1_M1_C2"/>
<MapItem sourceID="RR2_RP1_M1_C3"/>
<MapItem sourceID="RR2_RP1_M1_C4"/>
</Map>
<ListOfOperations>
<Delete id="RR2_RP1" DeleteMolecules="0"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR3" name="create_poly_B" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR3_RP1">
<ListOfMolecules>
<Molecule id="RR3_RP1_M1" name="Source">
<ListOfComponents>
<Component id="RR3_RP1_M1_C1" name="s" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR3_PP1">
<ListOfMolecules>
<Molecule id="RR3_PP1_M1" name="Source">
<ListOfComponents>
<Component id="RR3_PP1_M1_C1" name="s" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR3_PP2">
<ListOfMolecules>
<Molecule id="RR3_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR3_PP2_M1_C1" name="b1" numberOfBonds="0"/>
<Component id="RR3_PP2_M1_C2" name="b2" numberOfBonds="0"/>
<Component id="RR3_PP2_M1_C3" name="b3" numberOfBonds="0"/>
<Component id="RR3_PP2_M1_C4" name="b4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR3_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="_rateLaw3"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR3_RP1_M1" targetID="RR3_PP1_M1"/>
<MapItem sourceID="RR3_RP1_M1_C1" targetID="RR3_PP1_M1_C1"/>
</Map>
<ListOfOperations>
<Add id="RR3_PP2_M1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR4" name="decay_poly_B" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR4_RP1">
<ListOfMolecules>
<Molecule id="RR4_RP1_M1" name="poly_B">
<ListOfComponents>
<Component id="RR4_RP1_M1_C1" name="b1" numberOfBonds="0"/>
<Component id="RR4_RP1_M1_C2" name="b2" numberOfBonds="0"/>
<Component id="RR4_RP1_M1_C3" name="b3" numberOfBonds="0"/>
<Component id="RR4_RP1_M1_C4" name="b4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
</ListOfProductPatterns>
<RateLaw id="RR4_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="_rateLaw4"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR4_RP1_M1"/>
<MapItem sourceID="RR4_RP1_M1_C1"/>
<MapItem sourceID="RR4_RP1_M1_C2"/>
<MapItem sourceID="RR4_RP1_M1_C3"/>
<MapItem sourceID="RR4_RP1_M1_C4"/>
</Map>
<ListOfOperations>
<Delete id="RR4_RP1" DeleteMolecules="0"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR5" name="Rule_1" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR5_RP1">
<ListOfMolecules>
<Molecule id="RR5_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR5_RP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR5_RP2">
<ListOfMolecules>
<Molecule id="RR5_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR5_RP2_M1_C1" name="b1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR5_PP1">
<ListOfMolecules>
<Molecule id="RR5_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR5_PP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR5_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR5_PP1_M2_C1" name="b1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR5_PP1_B1" site1="RR5_PP1_M1_C1" site2="RR5_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR5_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR5_RP1_M1" targetID="RR5_PP1_M1"/>
<MapItem sourceID="RR5_RP1_M1_C1" targetID="RR5_PP1_M1_C1"/>
<MapItem sourceID="RR5_RP2_M1" targetID="RR5_PP1_M2"/>
<MapItem sourceID="RR5_RP2_M1_C1" targetID="RR5_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR5_RP1_M1_C1" site2="RR5_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR6" name="_reverse_Rule_1" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR6_RP1">
<ListOfMolecules>
<Molecule id="RR6_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR6_RP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR6_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR6_RP1_M2_C1" name="b1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR6_RP1_B1" site1="RR6_RP1_M1_C1" site2="RR6_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR6_PP1">
<ListOfMolecules>
<Molecule id="RR6_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR6_PP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR6_PP2">
<ListOfMolecules>
<Molecule id="RR6_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR6_PP2_M1_C1" name="b1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR6_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR6_RP1_M1" targetID="RR6_PP1_M1"/>
<MapItem sourceID="RR6_RP1_M1_C1" targetID="RR6_PP1_M1_C1"/>
<MapItem sourceID="RR6_RP1_M2" targetID="RR6_PP2_M1"/>
<MapItem sourceID="RR6_RP1_M2_C1" targetID="RR6_PP2_M1_C1"/>
</Map>
<ListOfOperations>
<DeleteBond site1="RR6_RP1_M1_C1" site2="RR6_RP1_M2_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR7" name="Rule_2" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR7_RP1">
<ListOfMolecules>
<Molecule id="RR7_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR7_RP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR7_RP2">
<ListOfMolecules>
<Molecule id="RR7_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR7_RP2_M1_C1" name="b2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR7_PP1">
<ListOfMolecules>
<Molecule id="RR7_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR7_PP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR7_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR7_PP1_M2_C1" name="b2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR7_PP1_B1" site1="RR7_PP1_M1_C1" site2="RR7_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR7_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR7_RP1_M1" targetID="RR7_PP1_M1"/>
<MapItem sourceID="RR7_RP1_M1_C1" targetID="RR7_PP1_M1_C1"/>
<MapItem sourceID="RR7_RP2_M1" targetID="RR7_PP1_M2"/>
<MapItem sourceID="RR7_RP2_M1_C1" targetID="RR7_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR7_RP1_M1_C1" site2="RR7_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR8" name="_reverse_Rule_2" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR8_RP1">
<ListOfMolecules>
<Molecule id="RR8_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR8_RP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR8_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR8_RP1_M2_C1" name="b2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR8_RP1_B1" site1="RR8_RP1_M1_C1" site2="RR8_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR8_PP1">
<ListOfMolecules>
<Molecule id="RR8_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR8_PP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR8_PP2">
<ListOfMolecules>
<Molecule id="RR8_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR8_PP2_M1_C1" name="b2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR8_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR8_RP1_M1" targetID="RR8_PP1_M1"/>
<MapItem sourceID="RR8_RP1_M1_C1" targetID="RR8_PP1_M1_C1"/>
<MapItem sourceID="RR8_RP1_M2" targetID="RR8_PP2_M1"/>
<MapItem sourceID="RR8_RP1_M2_C1" targetID="RR8_PP2_M1_C1"/>
</Map>
<ListOfOperations>
<DeleteBond site1="RR8_RP1_M1_C1" site2="RR8_RP1_M2_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR9" name="Rule_3" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR9_RP1">
<ListOfMolecules>
<Molecule id="RR9_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR9_RP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR9_RP2">
<ListOfMolecules>
<Molecule id="RR9_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR9_RP2_M1_C1" name="b3" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR9_PP1">
<ListOfMolecules>
<Molecule id="RR9_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR9_PP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR9_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR9_PP1_M2_C1" name="b3" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR9_PP1_B1" site1="RR9_PP1_M1_C1" site2="RR9_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR9_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR9_RP1_M1" targetID="RR9_PP1_M1"/>
<MapItem sourceID="RR9_RP1_M1_C1" targetID="RR9_PP1_M1_C1"/>
<MapItem sourceID="RR9_RP2_M1" targetID="RR9_PP1_M2"/>
<MapItem sourceID="RR9_RP2_M1_C1" targetID="RR9_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR9_RP1_M1_C1" site2="RR9_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR10" name="_reverse_Rule_3" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR10_RP1">
<ListOfMolecules>
<Molecule id="RR10_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR10_RP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR10_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR10_RP1_M2_C1" name="b3" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR10_RP1_B1" site1="RR10_RP1_M1_C1" site2="RR10_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR10_PP1">
<ListOfMolecules>
<Molecule id="RR10_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR10_PP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR10_PP2">
<ListOfMolecules>
<Molecule id="RR10_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR10_PP2_M1_C1" name="b3" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR10_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR10_RP1_M1" targetID="RR10_PP1_M1"/>
<MapItem sourceID="RR10_RP1_M1_C1" targetID="RR10_PP1_M1_C1"/>
<MapItem sourceID="RR10_RP1_M2" targetID="RR10_PP2_M1"/>
<MapItem sourceID="RR10_RP1_M2_C1" targetID="RR10_PP2_M1_C1"/>
</Map>
<ListOfOperations>
<DeleteBond site1="RR10_RP1_M1_C1" site2="RR10_RP1_M2_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR11" name="Rule_4" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR11_RP1">
<ListOfMolecules>
<Molecule id="RR11_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR11_RP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR11_RP2">
<ListOfMolecules>
<Molecule id="RR11_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR11_RP2_M1_C1" name="b4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR11_PP1">
<ListOfMolecules>
<Molecule id="RR11_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR11_PP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR11_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR11_PP1_M2_C1" name="b4" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR11_PP1_B1" site1="RR11_PP1_M1_C1" site2="RR11_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR11_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR11_RP1_M1" targetID="RR11_PP1_M1"/>
<MapItem sourceID="RR11_RP1_M1_C1" targetID="RR11_PP1_M1_C1"/>
<MapItem sourceID="RR11_RP2_M1" targetID="RR11_PP1_M2"/>
<MapItem sourceID="RR11_RP2_M1_C1" targetID="RR11_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR11_RP1_M1_C1" site2="RR11_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR12" name="_reverse_Rule_4" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR12_RP1">
<ListOfMolecules>
<Molecule id="RR12_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR12_RP1_M1_C1" name="a1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR12_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR12_RP1_M2_C1" name="b4" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR12_RP1_B1" site1="RR12_RP1_M1_C1" site2="RR12_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR12_PP1">
<ListOfMolecules>
<Molecule id="RR12_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR12_PP1_M1_C1" name="a1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR12_PP2">
<ListOfMolecules>
<Molecule id="RR12_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR12_PP2_M1_C1" name="b4" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR12_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR12_RP1_M1" targetID="RR12_PP1_M1"/>
<MapItem sourceID="RR12_RP1_M1_C1" targetID="RR12_PP1_M1_C1"/>
<MapItem sourceID="RR12_RP1_M2" targetID="RR12_PP2_M1"/>
<MapItem sourceID="RR12_RP1_M2_C1" targetID="RR12_PP2_M1_C1"/>
</Map>
<ListOfOperations>
<DeleteBond site1="RR12_RP1_M1_C1" site2="RR12_RP1_M2_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR13" name="Rule_5" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR13_RP1">
<ListOfMolecules>
<Molecule id="RR13_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR13_RP1_M1_C1" name="a2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR13_RP2">
<ListOfMolecules>
<Molecule id="RR13_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR13_RP2_M1_C1" name="b1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR13_PP1">
<ListOfMolecules>
<Molecule id="RR13_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR13_PP1_M1_C1" name="a2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR13_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR13_PP1_M2_C1" name="b1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR13_PP1_B1" site1="RR13_PP1_M1_C1" site2="RR13_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR13_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR13_RP1_M1" targetID="RR13_PP1_M1"/>
<MapItem sourceID="RR13_RP1_M1_C1" targetID="RR13_PP1_M1_C1"/>
<MapItem sourceID="RR13_RP2_M1" targetID="RR13_PP1_M2"/>
<MapItem sourceID="RR13_RP2_M1_C1" targetID="RR13_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR13_RP1_M1_C1" site2="RR13_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR14" name="_reverse_Rule_5" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR14_RP1">
<ListOfMolecules>
<Molecule id="RR14_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR14_RP1_M1_C1" name="a2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR14_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR14_RP1_M2_C1" name="b1" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR14_RP1_B1" site1="RR14_RP1_M1_C1" site2="RR14_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR14_PP1">
<ListOfMolecules>
<Molecule id="RR14_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR14_PP1_M1_C1" name="a2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR14_PP2">
<ListOfMolecules>
<Molecule id="RR14_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR14_PP2_M1_C1" name="b1" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR14_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR14_RP1_M1" targetID="RR14_PP1_M1"/>
<MapItem sourceID="RR14_RP1_M1_C1" targetID="RR14_PP1_M1_C1"/>
<MapItem sourceID="RR14_RP1_M2" targetID="RR14_PP2_M1"/>
<MapItem sourceID="RR14_RP1_M2_C1" targetID="RR14_PP2_M1_C1"/>
</Map>
<ListOfOperations>
<DeleteBond site1="RR14_RP1_M1_C1" site2="RR14_RP1_M2_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR15" name="Rule_6" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR15_RP1">
<ListOfMolecules>
<Molecule id="RR15_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR15_RP1_M1_C1" name="a2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR15_RP2">
<ListOfMolecules>
<Molecule id="RR15_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR15_RP2_M1_C1" name="b2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR15_PP1">
<ListOfMolecules>
<Molecule id="RR15_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR15_PP1_M1_C1" name="a2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR15_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR15_PP1_M2_C1" name="b2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR15_PP1_B1" site1="RR15_PP1_M1_C1" site2="RR15_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR15_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR15_RP1_M1" targetID="RR15_PP1_M1"/>
<MapItem sourceID="RR15_RP1_M1_C1" targetID="RR15_PP1_M1_C1"/>
<MapItem sourceID="RR15_RP2_M1" targetID="RR15_PP1_M2"/>
<MapItem sourceID="RR15_RP2_M1_C1" targetID="RR15_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR15_RP1_M1_C1" site2="RR15_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR16" name="_reverse_Rule_6" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR16_RP1">
<ListOfMolecules>
<Molecule id="RR16_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR16_RP1_M1_C1" name="a2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR16_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR16_RP1_M2_C1" name="b2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR16_RP1_B1" site1="RR16_RP1_M1_C1" site2="RR16_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR16_PP1">
<ListOfMolecules>
<Molecule id="RR16_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR16_PP1_M1_C1" name="a2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR16_PP2">
<ListOfMolecules>
<Molecule id="RR16_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR16_PP2_M1_C1" name="b2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR16_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR16_RP1_M1" targetID="RR16_PP1_M1"/>
<MapItem sourceID="RR16_RP1_M1_C1" targetID="RR16_PP1_M1_C1"/>
<MapItem sourceID="RR16_RP1_M2" targetID="RR16_PP2_M1"/>
<MapItem sourceID="RR16_RP1_M2_C1" targetID="RR16_PP2_M1_C1"/>
</Map>
<ListOfOperations>
<DeleteBond site1="RR16_RP1_M1_C1" site2="RR16_RP1_M2_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR17" name="Rule_7" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR17_RP1">
<ListOfMolecules>
<Molecule id="RR17_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR17_RP1_M1_C1" name="a2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
<ReactantPattern id="RR17_RP2">
<ListOfMolecules>
<Molecule id="RR17_RP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR17_RP2_M1_C1" name="b3" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR17_PP1">
<ListOfMolecules>
<Molecule id="RR17_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR17_PP1_M1_C1" name="a2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR17_PP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR17_PP1_M2_C1" name="b3" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR17_PP1_B1" site1="RR17_PP1_M1_C1" site2="RR17_PP1_M2_C1"/>
</ListOfBonds>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR17_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="kon"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR17_RP1_M1" targetID="RR17_PP1_M1"/>
<MapItem sourceID="RR17_RP1_M1_C1" targetID="RR17_PP1_M1_C1"/>
<MapItem sourceID="RR17_RP2_M1" targetID="RR17_PP1_M2"/>
<MapItem sourceID="RR17_RP2_M1_C1" targetID="RR17_PP1_M2_C1"/>
</Map>
<ListOfOperations>
<AddBond site1="RR17_RP1_M1_C1" site2="RR17_RP2_M1_C1"/>
</ListOfOperations>
</ReactionRule>
<ReactionRule id="RR18" name="_reverse_Rule_7" symmetry_factor="1">
<ListOfReactantPatterns>
<ReactantPattern id="RR18_RP1">
<ListOfMolecules>
<Molecule id="RR18_RP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR18_RP1_M1_C1" name="a2" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
<Molecule id="RR18_RP1_M2" name="poly_B">
<ListOfComponents>
<Component id="RR18_RP1_M2_C1" name="b3" numberOfBonds="1"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
<ListOfBonds>
<Bond id="RR18_RP1_B1" site1="RR18_RP1_M1_C1" site2="RR18_RP1_M2_C1"/>
</ListOfBonds>
</ReactantPattern>
</ListOfReactantPatterns>
<ListOfProductPatterns>
<ProductPattern id="RR18_PP1">
<ListOfMolecules>
<Molecule id="RR18_PP1_M1" name="poly_A">
<ListOfComponents>
<Component id="RR18_PP1_M1_C1" name="a2" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
<ProductPattern id="RR18_PP2">
<ListOfMolecules>
<Molecule id="RR18_PP2_M1" name="poly_B">
<ListOfComponents>
<Component id="RR18_PP2_M1_C1" name="b3" numberOfBonds="0"/>
</ListOfComponents>
</Molecule>
</ListOfMolecules>
</ProductPattern>
</ListOfProductPatterns>
<RateLaw id="RR18_RateLaw" type="Ele" totalrate="0">
<ListOfRateConstants>
<RateConstant value="koff"/>
</ListOfRateConstants>
</RateLaw>
<Map>
<MapItem sourceID="RR18_RP1_M1" targetID="RR18_PP1_M1"/>
<MapItem sourceID="RR18_RP1_M1_C1" targetID="RR18_PP1_M1_C1"/>
<MapItem sourceID="RR18_RP1_M2" targetID="RR18_PP2_M1"/>