From e30fc231620b5ec93b0ddc6c46ad11bf5d2d3338 Mon Sep 17 00:00:00 2001 From: Adriaan Dokter Date: Mon, 9 May 2022 11:44:25 -0400 Subject: [PATCH] more CRAN link fixes --- .Rbuildignore | 1 + NEWS.md | 2 +- README.Rmd | 6 +++--- README.md | 6 +++--- vignettes/rad_aero_19.Rmd | 2 +- 5 files changed, 9 insertions(+), 8 deletions(-) diff --git a/.Rbuildignore b/.Rbuildignore index adf29bf8d..a55c23cab 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -14,3 +14,4 @@ pkgdown/ cran-comments.md inst/extdata/vpts.txt.zip ^\.github$ +^CRAN-SUBMISSION$ diff --git a/NEWS.md b/NEWS.md index e397097fa..81fb9aa8e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -184,7 +184,7 @@ First release on CRAN! All issues included in this release can be found [here](h * Details for deprecated functions `mt()`, `mtr()`, `cmt()` are now displayed with function (#166). -* [README](https://adriaandokter.com/bioRad) reviewed for easier installation and usage (#155). +* [README](https://adriaandokter.com/bioRad/) reviewed for easier installation and usage (#155). * [Get started vignette](https://adriaandokter.com/bioRad/articles/bioRad.html) is now based on figure and workflow from [Dokter et al.](https://doi.org/10.1111/ecog.04028) (#168). diff --git a/README.Rmd b/README.Rmd index 8b447685f..ed4251388 100644 --- a/README.Rmd +++ b/README.Rmd @@ -35,7 +35,7 @@ More vignettes: * [Range correction](https://adriaandokter.com/bioRad/articles/range_correction.html): estimate spatial images of vertically integrated density corrected for range effects. -Documentation for the latest development version can be found [here](https://adriaandokter.com/bioRad/dev). +Documentation for the latest development version can be found [here](https://adriaandokter.com/bioRad/dev/). ## Installation @@ -82,7 +82,7 @@ library(bioRad) You need to install Docker to: * Process radar data into vertical profiles of biological targets with `calculate_vp()`. -* Read [NEXRAD radar data](https://registry.opendata.aws/noaa-nexrad/) or [IRIS RAW](ftp://ftp.sigmet.com/outgoing/manuals/IRIS_Programmers_Manual.pdf) data with `read_pvolfile()`. Docker is not required for reading ODIM radar data. +* Read [NEXRAD radar data](https://registry.opendata.aws/noaa-nexrad/) or [IRIS RAW](ftp://ftp.sigmet.com/outgoing/manuals//IRIS-Programming-Guide-M211318EN.pdf) data with `read_pvolfile()`. Docker is not required for reading ODIM radar data. * Convert NEXRAD radar data to ODIM format with `nexrad_to_odim()`. * Use the [MistNet](https://doi.org/10.1111/2041-210X.13280) neural network with `calculate_vp()` or `apply_mistnet()` @@ -113,7 +113,7 @@ Why? bioRad makes use of a [C implementation of the vol2bird](https://github.com ### Radar data example -bioRad can read weather radar data (= polar volumes) in the [`ODIM`](http://eumetnet.eu/wp-content/uploads/2017/01/OPERA_hdf_description_2014.pdf) format and formats supported by the [RSL library](http://trmm-fc.gsfc.nasa.gov/trmm_gv/software/rsl/), such as NEXRAD data. NEXRAD data (US) are [available as open data](https://www.ncdc.noaa.gov/nexradinv/) and on [AWS](https://registry.opendata.aws/noaa-nexrad/). +bioRad can read weather radar data (= polar volumes) in the [`ODIM`](http://eumetnet.eu/wp-content/uploads/2017/01/OPERA_hdf_description_2014.pdf) format and formats supported by the [RSL library](https://trmm-fc.gsfc.nasa.gov/trmm_gv/software/rsl/), such as NEXRAD data. NEXRAD data (US) are [available as open data](https://www.ncdc.noaa.gov/nexradinv/) and on [AWS](https://registry.opendata.aws/noaa-nexrad/). Here we read an example polar volume data file with `read_pvolfile()`, extract the scan/sweep at elevation angle 3 with `get_scan()`, project the data to a plan position indicator with `project_as_ppi()` and plot the _radial velocity_ of detected targets with `plot()`: diff --git a/README.md b/README.md index a19639f9e..8bee7cc79 100644 --- a/README.md +++ b/README.md @@ -41,7 +41,7 @@ More vignettes: for range effects. Documentation for the latest development version can be found -[here](https://adriaandokter.com/bioRad/dev). +[here](https://adriaandokter.com/bioRad/dev/). ## Installation @@ -99,7 +99,7 @@ You need to install Docker to: `calculate_vp()`. - Read [NEXRAD radar data](https://registry.opendata.aws/noaa-nexrad/) or [IRIS - RAW](ftp://ftp.sigmet.com/outgoing/manuals/IRIS_Programmers_Manual.pdf) + RAW](ftp://ftp.sigmet.com/outgoing/manuals//IRIS-Programming-Guide-M211318EN.pdf) data with `read_pvolfile()`. Docker is not required for reading ODIM radar data. - Convert NEXRAD radar data to ODIM format with `nexrad_to_odim()`. @@ -162,7 +162,7 @@ Known issues with Docker bioRad can read weather radar data (= polar volumes) in the [`ODIM`](http://eumetnet.eu/wp-content/uploads/2017/01/OPERA_hdf_description_2014.pdf) format and formats supported by the [RSL -library](http://trmm-fc.gsfc.nasa.gov/trmm_gv/software/rsl/), such as +library](https://trmm-fc.gsfc.nasa.gov/trmm_gv/software/rsl/), such as NEXRAD data. NEXRAD data (US) are [available as open data](https://www.ncdc.noaa.gov/nexradinv/) and on [AWS](https://registry.opendata.aws/noaa-nexrad/). diff --git a/vignettes/rad_aero_19.Rmd b/vignettes/rad_aero_19.Rmd index ca9afc96d..12aedc646 100644 --- a/vignettes/rad_aero_19.Rmd +++ b/vignettes/rad_aero_19.Rmd @@ -419,7 +419,7 @@ plot(my_vpts, quantity = "DBZH") ### 3.1 Obtaining radar data * US NEXRAD polar volume data can be accessed in the [Amazon cloud](https://s3.amazonaws.com/noaa-nexrad-level2/index.html). -* European radar data can be accessed at http://enram.github.io/data-repository/. These are processed vertical profiles, the full polar volume data are not openly available for most countries. +* European radar data can be accessed at https://aloftdata.eu. These are processed vertical profiles, the full polar volume data are not openly available for most countries. The names of the radars in the networks can be found here: