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setup.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>Setup Instructions</title>
<script src="site_libs/header-attrs-2.29/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/flatly.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<link rel="stylesheet" href="custom.css" type="text/css" />
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
details > summary > p:only-child {
display: inline;
}
pre code {
padding: 0;
}
</style>
<style type="text/css">
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark the anchor link active (and if it's in a dropdown, also mark that active)
var dropdown = menuAnchor.closest('li.dropdown');
if (window.bootstrap) { // Bootstrap 4+
menuAnchor.addClass('active');
dropdown.find('> .dropdown-toggle').addClass('active');
} else { // Bootstrap 3
menuAnchor.parent().addClass('active');
dropdown.addClass('active');
}
// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
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</script>
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<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
border: 1px solid #ddd;
border-radius: 4px;
}
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content: "\e259";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
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content: "\e258";
font-family: 'Glyphicons Halflings';
border: none;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
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.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
</head>
<body>
<div class="container-fluid main-container">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">QUADstats</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">
<span class="fa fa-home"></span>
Home
</a>
</li>
<li>
<a href="setup.html">
<span class="fa fa-cog"></span>
Setup
</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
<span class="fa fa-book"></span>
R Book
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="https://intro2r.com">
<span class="fa fa-firefox"></span>
Web book
</a>
</li>
<li class="divider"></li>
<li>
<a href="https://github.com/alexd106/Rbook/raw/master/docs/Rbook.pdf">
<span class="fa fa-file-pdf"></span>
PDF book
</a>
</li>
</ul>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
<span class="fa fa-book"></span>
Exercises
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</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="exercises.html">
<span class="fa fa-book"></span>
Exercises
</a>
</li>
<li class="divider"></li>
<li>
<a href="exercise_solutions.html">
<span class="fa fa-book"></span>
Exercise Solutions
</a>
</li>
</ul>
</li>
<li>
<a href="data.html">
<span class="fa fa-download"></span>
Data
</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
<span class="fa fa-question-circle"></span>
Info
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</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="syllabus.html">
<span class="fa fa-graduation-cap"></span>
Syllabus
</a>
</li>
<li>
<a href="People.html">
<span class="fa fa-user-friends"></span>
People
</a>
</li>
<li class="divider"></li>
<li>
<a href="resources.html">
<span class="fa fa-book"></span>
Resources
</a>
</li>
<li>
<a href="https://forms.gle/8HZFhZZEHv9ie6MR8">
<span class="fa fa-commenting"></span>
Feedback
</a>
</li>
<li>
<a href="https://www.quadrat.ac.uk/">
<span class="fa fa-chrome"></span>
QUADRAT
</a>
</li>
<li>
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Contact
</a>
</li>
<li class="divider"></li>
<li>
<a href="https://github.com/alexd106/QUADstats">
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Source code
</a>
</li>
<li>
<a href="https://twitter.com/Scedacity">
<span class="fa fa-twitter fa-lg"></span>
Twitter
</a>
</li>
</ul>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div id="header">
<h1 class="title toc-ignore">Setup Instructions</h1>
</div>
<p> </p>
<p>During the course we will be using both R and RStudio. To get your
computer ready for this course please follow the instructions under the
<strong><em>Core Software</em></strong> heading.</p>
<p> </p>
<div id="core-software" class="section level2">
<h2>Core Software</h2>
<p><strong>Install R.</strong> Install the latest version of R
(<strong>R version 4.4.2</strong>). Download and install R for <a
href="http://cran.r-project.org/bin/windows/base/"
target="_blank">Windows</a>, <a
href="http://cran.r-project.org/bin/macosx/" target="_blank">Mac</a>
(download the latest R-4.x.x.pkg file for your appropriate version of
Mac OS) or <a href="https://cran.r-project.org/bin/linux"
target="_blank">linux</a> (choose your flavour of linux).</p>
<p><strong>Install RStudio.</strong> Download and install <a
href="https://www.rstudio.com/products/rstudio/download/"
target="_blank">RStudio Desktop</a>.</p>
<p>You will need to download and install R and RStudio separately.
<strong>R</strong> is the underlying statistical computing environment.
<strong>RStudio</strong> is an integrated development environment (IDE)
that makes using R a little easier. You need to install R before you
install RStudio.</p>
<p> </p>
<p>See <a href="https://intro2r.com/install_r.html">Section 1.1</a> and
<a href="https://intro2r.com/installing-rstudio.html">1.2</a> of our
Introduction to R book for more details about installing R and RStudio.
We have also produced a video walking you through the process of
installing R and RStudio and also a brief introduction to RStudio.</p>
<p> </p>
<iframe src="https://player.vimeo.com/video/415501284" width="640" height="480" frameborder="0" allow="autoplay; fullscreen" allowfullscreen>
</iframe>
<p> </p>
<p>And see this video for a short introduction to using RStudio.</p>
<p> </p>
<iframe src="https://player.vimeo.com/video/416391353" width="640" height="480" frameborder="0" allow="autoplay; fullscreen" allowfullscreen>
</iframe>
<p> </p>
</div>
</div>
<script>
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<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
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<script>
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</body>
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