Skip to content

Latest commit

 

History

History
337 lines (321 loc) · 13.1 KB

dataset_description.md

File metadata and controls

337 lines (321 loc) · 13.1 KB

IUCN tables

IUCN spatial tables

Spatial data are available in the schema import_tables as spatial_corals, spatial_sharks_rays_chimaeras, spatial_mammals, spatial_amphibians, and they all contain the fields (relevants in bold):

  • fid bigint,
  • geom geometry(Polygon,4326),
  • id_no bigint,
  • binomial character varying(254),
  • presence integer,
  • origin integer,
  • seasonal integer,
  • compiler character varying(254),
  • yrcompiled integer,
  • citation character varying(254),
  • subspecies character varying(100),
  • subpop character varying(100),
  • source character varying(254),
  • island character varying(100),
  • tax_comm character varying(254),
  • dist_comm character varying(254),
  • generalisd integer,
  • legend character varying(100),
  • kingdom character varying(20),
  • phylum character varying(30),
  • class character varying(30),
  • order_ character varying(50),
  • family character varying(80),
  • genus character varying(80),
  • category character varying(5),
  • marine character varying(5),
  • terrestial character varying(5),
  • freshwater character varying(5),
  • shape_leng double precision,
  • shape_area double precision

These fields are described on Mapping and Distribution Data Attribute Standards for the IUCN Red List of Threatened Species, specifically, for the 2021 version:

fid is a weak, temporary, serial field (is not unique in case of appended corals). The field id_no is unique by species, but redundant by fields (within the ones of some interest for the analysis): presence, origin, seasonal, subspecies, subpop, (others?), and each row corresponds to a different polygon. A specific steps in spatial processing merge/dissolve these polygons by id_no, making this field unique, Primary Key.

IUCN non-spatial tables

All the non-spatial tables are available in the schema import_tables (relevants in bold):

  • non_spatial_all_other_fields
  • non_spatial_assessments
  • non_spatial_common_names
  • non_spatial_conservation_needed
  • non_spatial_countries
  • non_spatial_credits
  • non_spatial_dois
  • non_spatial_endemic (this is a clone of non_spatial_simple_summary which contains ONLY species defined endemic by IUCN)
  • non_spatial_fao (not available for all the groups)
  • non_spatial_habitat
  • non_spatial_lme (not available for all the groups)
  • non_spatial_references
  • non_spatial_research_needed
  • non_spatial_simple_summary
  • non_spatial_synonyms
  • non_spatial_taxonomy
  • non_spatial_threats
  • non_spatial_usetrade

The available fields (by table) are (relevants in bold):

  • non_spatial_all_other_fields.aoo_range
  • non_spatial_all_other_fields.arearestricted_isrestricted
  • non_spatial_all_other_fields.assessmentid
  • non_spatial_all_other_fields.congregatory_value
  • non_spatial_all_other_fields.cropwildrelative_isrelative
  • non_spatial_all_other_fields.depthlower_limit
  • non_spatial_all_other_fields.depthupper_limit
  • non_spatial_all_other_fields.elevationlower_limit
  • non_spatial_all_other_fields.elevationupper_limit
  • non_spatial_all_other_fields.eoo_range
  • non_spatial_all_other_fields.fid
  • non_spatial_all_other_fields.generationlength_range
  • non_spatial_all_other_fields.inplaceeducationcontrolled_value
  • non_spatial_all_other_fields.inplaceeducationinternationallegislation_value
  • non_spatial_all_other_fields.inplaceeducationsubjecttoprograms_value
  • non_spatial_all_other_fields.inplacelandwaterprotectionareaplanned_value
  • non_spatial_all_other_fields.inplacelandwaterprotectioninpa_value
  • non_spatial_all_other_fields.inplacelandwaterprotectioninvasivecontrol_value
  • non_spatial_all_other_fields.inplacelandwaterprotectionpercentprotected_value
  • non_spatial_all_other_fields.inplacelandwaterprotectionsitesidentified_value
  • non_spatial_all_other_fields.inplaceresearchmonitoringscheme_value
  • non_spatial_all_other_fields.inplaceresearchrecoveryplan_value
  • non_spatial_all_other_fields.inplacespeciesmanagementexsitu_value
  • non_spatial_all_other_fields.inplacespeciesmanagementharvestplan_value
  • non_spatial_all_other_fields.internaltaxonid
  • non_spatial_all_other_fields.locationsnumber_range
  • non_spatial_all_other_fields.movementpatterns_pattern
  • non_spatial_all_other_fields.nothreats_nothreats
  • non_spatial_all_other_fields.populationsize_range
  • non_spatial_all_other_fields.scientificname
  • non_spatial_all_other_fields.severefragmentation_isfragmented
  • non_spatial_all_other_fields.subpopulationnumber_range
  • non_spatial_all_other_fields.threatsunknown_value
  • non_spatial_all_other_fields.yearofpopulationestimate_value
  • non_spatial_assessments.assessmentdate
  • non_spatial_assessments.assessmentid
  • non_spatial_assessments.conservationactions
  • non_spatial_assessments.criteriaversion
  • non_spatial_assessments.fid
  • non_spatial_assessments.habitat
  • non_spatial_assessments.internaltaxonid
  • non_spatial_assessments.language
  • non_spatial_assessments.population
  • non_spatial_assessments.populationtrend
  • non_spatial_assessments.possiblyextinct
  • non_spatial_assessments.possiblyextinctinthewild
  • non_spatial_assessments.range
  • non_spatial_assessments.rationale
  • non_spatial_assessments.realm
  • non_spatial_assessments.redlistcategory
  • non_spatial_assessments.redlistcriteria
  • non_spatial_assessments.scientificname
  • non_spatial_assessments.scopes
  • non_spatial_assessments.systems
  • non_spatial_assessments.threats
  • non_spatial_assessments.usetrade
  • non_spatial_assessments.yearlastseen
  • non_spatial_assessments.yearpublished
  • non_spatial_common_names.fid
  • non_spatial_common_names.internaltaxonid
  • non_spatial_common_names.language
  • non_spatial_common_names.main
  • non_spatial_common_names.name
  • non_spatial_common_names.scientificname
  • non_spatial_conservation_needed.assessmentid
  • non_spatial_conservation_needed.code
  • non_spatial_conservation_needed.fid
  • non_spatial_conservation_needed.internaltaxonid
  • non_spatial_conservation_needed.name
  • non_spatial_conservation_needed.note
  • non_spatial_conservation_needed.scientificname
  • non_spatial_countries.assessmentid
  • non_spatial_countries.code
  • non_spatial_countries.fid
  • non_spatial_countries.formerlybred
  • non_spatial_countries.internaltaxonid
  • non_spatial_countries.name
  • non_spatial_countries.origin
  • non_spatial_countries.presence
  • non_spatial_countries.scientificname
  • non_spatial_countries.seasonality
  • non_spatial_credits.assessmentid
  • non_spatial_credits.fid
  • non_spatial_credits.full
  • non_spatial_credits.internaltaxonid
  • non_spatial_credits.order
  • non_spatial_credits.scientificname
  • non_spatial_credits.text
  • non_spatial_credits.type
  • non_spatial_credits.value
  • non_spatial_dois.assessmentid
  • non_spatial_dois.doi
  • non_spatial_dois.fid
  • non_spatial_dois.internaltaxonid
  • non_spatial_dois.scientificname
  • non_spatial_endemic.fid
  • non_spatial_endemic.assessmentid (this is a subset, cloned by non_spatial_simple_summary, which contains ONLY species defined endemic by IUCN)
  • non_spatial_endemic.internaltaxonid (this is a subset, cloned by non_spatial_simple_summary, which contains ONLY species defined endemic by IUCN)
  • non_spatial_endemic.scientificname
  • non_spatial_endemic.kingdomname
  • non_spatial_endemic.phylumname
  • non_spatial_endemic.ordername
  • non_spatial_endemic.classname
  • non_spatial_endemic.familyname
  • non_spatial_endemic.genusname
  • non_spatial_endemic.speciesname
  • non_spatial_endemic.infratype
  • non_spatial_endemic.infraname
  • non_spatial_endemic.infraauthority
  • non_spatial_endemic.authority
  • non_spatial_endemic.redlistcategory
  • non_spatial_endemic.redlistcriteria
  • non_spatial_endemic.criteriaversion
  • non_spatial_endemic.populationtrend
  • non_spatial_endemic.scopes
  • non_spatial_fao.assessmentid
  • non_spatial_fao.code
  • non_spatial_fao.fid
  • non_spatial_fao.formerlybred
  • non_spatial_fao.internaltaxonid
  • non_spatial_fao.name
  • non_spatial_fao.origin
  • non_spatial_fao.presence
  • non_spatial_fao.scientificname
  • non_spatial_fao.seasonality
  • non_spatial_habitats.assessmentid
  • non_spatial_habitats.code
  • non_spatial_habitats.fid
  • non_spatial_habitats.internaltaxonid
  • non_spatial_habitats.majorimportance
  • non_spatial_habitats.name
  • non_spatial_habitats.scientificname
  • non_spatial_habitats.season
  • non_spatial_habitats.suitability
  • non_spatial_lme.assessmentid
  • non_spatial_lme.code
  • non_spatial_lme.fid
  • non_spatial_lme.formerlybred
  • non_spatial_lme.internaltaxonid
  • non_spatial_lme.name
  • non_spatial_lme.origin
  • non_spatial_lme.presence
  • non_spatial_lme.scientificname
  • non_spatial_lme.seasonality
  • non_spatial_references.assessmentid
  • non_spatial_references.author
  • non_spatial_references.citation
  • non_spatial_references.fid
  • non_spatial_references.internaltaxonid
  • non_spatial_references.scientificname
  • non_spatial_references.title
  • non_spatial_references.year
  • non_spatial_research_needed.assessmentid
  • non_spatial_research_needed.code
  • non_spatial_research_needed.fid
  • non_spatial_research_needed.internaltaxonid
  • non_spatial_research_needed.name
  • non_spatial_research_needed.note
  • non_spatial_research_needed.scientificname
  • non_spatial_simple_summary.assessmentid
  • non_spatial_simple_summary.authority
  • non_spatial_simple_summary.classname
  • non_spatial_simple_summary.criteriaversion
  • non_spatial_simple_summary.familyname
  • non_spatial_simple_summary.fid
  • non_spatial_simple_summary.genusname
  • non_spatial_simple_summary.infraauthority
  • non_spatial_simple_summary.infraname
  • non_spatial_simple_summary.infratype
  • non_spatial_simple_summary.internaltaxonid
  • non_spatial_simple_summary.kingdomname
  • non_spatial_simple_summary.ordername
  • non_spatial_simple_summary.phylumname
  • non_spatial_simple_summary.populationtrend
  • non_spatial_simple_summary.redlistcategory
  • non_spatial_simple_summary.redlistcriteria
  • non_spatial_simple_summary.scientificname
  • non_spatial_simple_summary.scopes
  • non_spatial_simple_summary.speciesname
  • non_spatial_synonyms.fid
  • non_spatial_synonyms.genusname
  • non_spatial_synonyms.infrarankauthor
  • non_spatial_synonyms.infratype
  • non_spatial_synonyms.internaltaxonid
  • non_spatial_synonyms.name
  • non_spatial_synonyms.scientificname
  • non_spatial_synonyms.speciesauthor
  • non_spatial_synonyms.speciesname
  • non_spatial_taxonomy.authority
  • non_spatial_taxonomy.classname
  • non_spatial_taxonomy.familyname
  • non_spatial_taxonomy.fid
  • non_spatial_taxonomy.genusname
  • non_spatial_taxonomy.infraauthority
  • non_spatial_taxonomy.infraname
  • non_spatial_taxonomy.infratype
  • non_spatial_taxonomy.internaltaxonid
  • non_spatial_taxonomy.kingdomname
  • non_spatial_taxonomy.ordername
  • non_spatial_taxonomy.phylumname
  • non_spatial_taxonomy.scientificname
  • non_spatial_taxonomy.speciesname
  • non_spatial_taxonomy.subpopulationname
  • non_spatial_taxonomy.taxonomicnotes
  • non_spatial_threats.ancestry
  • non_spatial_threats.assessmentid
  • non_spatial_threats.code
  • non_spatial_threats.fid
  • non_spatial_threats.ias
  • non_spatial_threats.internaltaxonid
  • non_spatial_threats.internationaltrade
  • non_spatial_threats.name
  • non_spatial_threats.scientificname
  • non_spatial_threats.scope
  • non_spatial_threats.severity
  • non_spatial_threats.stresscode
  • non_spatial_threats.stressname
  • non_spatial_threats.text
  • non_spatial_threats.timing
  • non_spatial_threats.virus
  • non_spatial_usetrade.assessmentid
  • non_spatial_usetrade.code
  • non_spatial_usetrade.fid
  • non_spatial_usetrade.internaltaxonid
  • non_spatial_usetrade.international
  • non_spatial_usetrade.name
  • non_spatial_usetrade.national
  • non_spatial_usetrade.other
  • non_spatial_usetrade.scientificname
  • non_spatial_usetrade.subsistence

BIRDLIFE tables

Spatial and non-spatial data for birds are available in the schema import_tables as:

  • spatial_birds
  • non_spatial_birds

The available fields (by table) are (relevants in bold):

  • spatial_birds.citation
  • spatial_birds.compiler
  • spatial_birds.data_sens
  • spatial_birds.dist_comm
  • spatial_birds.fid
  • spatial_birds.generalisd
  • spatial_birds.id_no
  • spatial_birds.origin
  • spatial_birds.presence
  • spatial_birds.sci_name
  • spatial_birds.seasonal
  • spatial_birds.sens_comm
  • spatial_birds.shape
  • spatial_birds.shape_area
  • spatial_birds.shape_length
  • spatial_birds.source
  • spatial_birds.tax_comm
  • spatial_birds.version
  • spatial_birds.yrcompiled
  • spatial_birds.yrmodified
  • non_spatial_birds.common_name
  • non_spatial_birds.f2021_iucn_red_list_category
  • non_spatial_birds.family_name
  • non_spatial_birds.fid
  • non_spatial_birds.order_
  • non_spatial_birds.scientific_name
  • non_spatial_birds.sisid.