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docker-compose.yml
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version: '2'
services:
# eAE Parts
jupytereae:
image: aoehmich/jupyter-eae:latest
hostname: jupyter
privileged: true
depends_on:
- interfaceeae
command: [-deamon, "X.X.X.X", "8443", jupytereae, "22"]
ports:
- "7180:7180"
- "7777:7777"
- "8888:8888"
- "18088:18088"
volumes:
- "./jupyter/jupyter_notebook_config.py:/root/jupyter_notebook_config.py"
- "./ssh/id_rsa:/root/id_rsa"
- "./ssh/id_rsa.pub:/root/id_rsa.pub"
interfaceeae:
image: aoehmich/interface-eae:latest
container_name: interfaceeae
hostname: interfaceeae
stdin_open: true
tty: true
depends_on:
- mongo
ports:
- "8443:8443"
volumes:
- "./interfaceEAE/Config.groovy:/home/eae/.grails/interfaceEAEConfig/Config.groovy"
- "./interfaceEAE/lsb.hosts:/opt/openlava-3.3/etc/lsb.hosts"
- "./interfaceEAE/lsb.queues:/opt/openlava-3.3/etc/lsb.queues"
- "./interfaceEAE/lsf.cluster.openlava:/opt/openlava-3.3/etc/lsf.cluster.openlava"
- "./ssh/id_rsa:/home/eae/.ssh/id_rsa"
- "./ssh/id_rsa.pub:/home/eae/.ssh/id_rsa.pub"
worker1:
image: aoehmich/worker-eae:latest
container_name: worker1
hostname: worker1
stdin_open: true
tty: true
depends_on:
- interfaceeae
volumes:
- "./interfaceEAE/lsf.cluster.openlava:/opt/openlava-3.3/etc/lsf.cluster.openlava"
- "./interfaceEAE/lsb.hosts:/opt/openlava-3.3/etc/lsb.hosts"
- "./interfaceEAE/lsb.queues:/opt/openlava-3.3/etc/lsb.queues"
- "./ssh/id_rsa:/home/eae/.ssh/id_rsa"
- "./ssh/id_rsa.pub:/home/eae/.ssh/id_rsa.pub"
worker2:
image: aoehmich/worker-eae:latest
container_name: worker2
hostname: worker2
stdin_open: true
tty: true
depends_on:
- interfaceeae
volumes:
- "./interfaceEAE/lsf.cluster.openlava:/opt/openlava-3.3/etc/lsf.cluster.openlava"
- "./interfaceEAE/lsb.hosts:/opt/openlava-3.3/etc/lsb.hosts"
- "./interfaceEAE/lsb.queues:/opt/openlava-3.3/etc/lsb.queues"
- "./ssh/id_rsa:/home/eae/.ssh/id_rsa"
- "./ssh/id_rsa.pub:/home/eae/.ssh/id_rsa.pub"
workerSpark:
image: aoehmich/worker-spark-eae:latest
container_name: workerSpark
hostname: workerSpark
stdin_open: true
tty: true
privileged: true
ports:
- "7181:7180"
depends_on:
- interfaceeae
volumes:
- "./interfaceEAE/lsf.cluster.openlava:/opt/openlava-3.3/etc/lsf.cluster.openlava"
- "./interfaceEAE/lsb.hosts:/opt/openlava-3.3/etc/lsb.hosts"
- "./interfaceEAE/lsb.queues:/opt/openlava-3.3/etc/lsb.queues"
- "./ssh/id_rsa:/home/eae/.ssh/id_rsa"
- "./ssh/id_rsa.pub:/home/eae/.ssh/id_rsa.pub"
mongo-initialize:
image: aoehmich/mongo-eae:latest
depends_on:
- mongo
mongo:
image: mongo:3.4.0
# tranSMART with the eAE plugin
tmweb:
image: httpd:alpine
restart: unless-stopped
network_mode: host
depends_on:
- tmapp
volumes:
- "./transmart-web/httpd-vhosts.conf:/usr/local/apache2/conf/extra/httpd-vhosts.conf"
- "./transmart-web/httpd.conf:/usr/local/apache2/conf/httpd.conf"
tmapp:
image: aoehmich/transmart-app-eae:latest
restart: unless-stopped
ports:
- "8009:8009"
- "8080:8080"
depends_on:
- tmdb
- tmsolr
volumes:
- "./transmart-app/Config.groovy:/root/.grails/transmartConfig/Config.groovy"
- "./transmart-app/DataSource.groovy:/root/.grails/transmartConfig/DataSource.groovy"
- "./transmart-app/setenv.sh:/usr/local/tomcat/bin/setenv.sh"
tmdb:
image: dennyverbeeck/transmart-db:etriks-v3.0
restart: unless-stopped
ports:
- "127.0.0.1:5432:5432"
tmsolr:
image: dennyverbeeck/transmart-solr:etriks-v3.0
restart: unless-stopped
tmrserve:
image: dennyverbeeck/transmart-rserve:etriks-v3.0
restart: unless-stopped
volumes_from:
- tmapp
tmload:
image: dennyverbeeck/transmart-load:etriks-v3.0
depends_on:
- tmdb