From 158e82da950e74f1cfe97653d4aaacdc1ee8a2b0 Mon Sep 17 00:00:00 2001
From: Ash O'Farrell <aofarrel@ucsc.edu>
Date: Tue, 21 Jan 2025 17:57:33 -0800
Subject: [PATCH] date_pipeline_ran no longer constantly overwritten

---
 myco_raw.wdl | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/myco_raw.wdl b/myco_raw.wdl
index 6035071..0346cb0 100644
--- a/myco_raw.wdl
+++ b/myco_raw.wdl
@@ -13,6 +13,7 @@ workflow myco {
 	input {
 		Array[Array[File]] paired_fastq_sets
 		String date_pipeline_ran
+		String? date_pipeline_previously_ran
 		
 		String? output_sample_name
 		Boolean guardrail_mode                 = true
@@ -380,7 +381,7 @@ workflow myco {
 		
 	output {
 		String tbd_status = select_first([finalcode, pass])
-		String tbd_pipeline_run = date_pipeline_ran
+		String tbd_pipeline_run = select_first([date_pipeline_previously_ran, date_pipeline_ran])
 
 		# decon/fastp metadata pulled out directly
 		Float tbd_qc_q20_in = decontam_each_sample.q20_in[0]