-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html
executable file
·51 lines (41 loc) · 2.35 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
<html>
<title>Lab14: Best Practices (CBMG688p, Stoltzfus)</title>
<h1>Lab14: Best Practices (CBMG688p, Stoltzfus)</h1>
Note that some of the class material may say "BISI648b" rather than CBMG688p, which is how the class was cross-listed last year. I did not have time to change all of these.
<h2>Lecture slides</h2>
The <a href="./CBMG688P_Lab14/best_practices_bisi648b.pptx">lecture slides (PowerPoint)</a> provide a guide to all of the material. Please begin here if you did not attend class.
<h2>Lesson plans (open in browser)</h2>
<ul>
<li><a href="./CBMG688P_Lab14/Lessons/cvs_lesson.html">cvs_lesson.html</a>
<li><a href="./CBMG688P_Lab14/Lessons/stamp_output_lesson.html">stamp_output_lesson.html</a>
<li><a href="./CBMG688P_Lab14/Lessons/getopt_lesson.html">getopt_lesson.html</a>
<li><a href="./CBMG688P_Lab14/Lessons/perldoc_lesson.html">perldoc_lesson.html</a>
<li><a href="./CBMG688P_Lab14/Lessons/modularize_lesson.html">modularize_lesson.html</a>
</ul>
<h2>Other stuff used in class</h2>
<ul>
<li><a href="./CBMG688P_Lab14/Materials/esearch_wrapper.pl">esearch_wrapper.pl</a>
<li><a href="./CBMG688P_Lab14/Materials/final_esearch_wrapper.pl">final_esearch_wrapper.pl</a>
<li><a href="./CBMG688P_Lab14/Materials/stamp_output.pl">stamp_output.pl</a>
</ul>
<h2>Assignment</h2>
<ul>
<li><a href="./CBMG688P_Lab14/Materials/best_practices_assignment_BISI648b.txt">Assignment</a>
</ul>
<h2>For reference (mentioned, but not covered in class)</h2>
<ul>
<li><a href="http://mrsrl.stanford.edu/~brian/cvstutorial/">Tutorial for CVS</a>
<li><a href="http://perldoc.perl.org/Getopt/Long.html">PerlDocs for GetOpt::Long</a>
<li><a href="http://articles.techrepublic.com.com/5100-10878_11-5363190.html">Tutorial for XML::Simple</a>
<li><a href="http://perldoc.perl.org/perlpod.html">Plain Old Documentation (POD) documentation</a>
<li><a href="./References/sci_soft_dev_Baxter_2006.pdf">Baxter, et al, Scientific Software Development is Not an Oxymoron</a>
<li><a href="./References/how-scientists-use-computers-2009.pdf">Hannay, et al., How Scientists Use Computers</a>
<li><a href="./References/Noble_2009.pdf">Noble, 2009, A quick guide to organizing computational biology projects. (PLoS Comp Biol)</a>
<li><a href="./References/Meerali_2010.pdf">Meerali, 2010, ...ERROR...why scientific programming does not compute</a>
</ul>
<footer>
<hr>
<p>Arlin Stoltzfus
<p>$Id$
</footer>
</html>