layout	permalink	title	header1	header2	image	keywords	description	instructors	length
workshop_main_3day	/epidemiology_2018	Genomic Epidemiology	Workshop Pages for Students	Infectious Disease Genomic Epidemiology	/site_images/CBW_wshop-epidem_map-icon.png	next generation sequencing platforms, visualization tools	Course providing an introduction to genomic epidemiology analysis followed by hands-on practical tutorials demonstrating the use of selected analysis tools.	William Hsiao, Gary Van Domselaar, Eduardo Taboada, Andrew McArthur, Anamaria Crisan, Fiona Brinkman	3 days

Welcome

Welcome to Infectious Disease Genomic Epidemiology 2018.

The course schedule can be found here.

Pre-readings, pre-work, and laptop setup instructions can be found here.

We are using Google Classroom for discussion. Join the Class at https://classroom.google.com, select the "+" symbol in the upper right corner, click on "Join Class" and enter the class code provided to you.

The full course notes are available as a single PDF.

Class photo

Day 1

Welcome

Ann Meyer

Module 1: Introduction to Public Health Microbiology and Genomic Epidemiology

Will Hsiao

Lecture

Recording

Lab Practical: Connecting to the Cloud

Lecture

We have set up 30 instances on the Amazon cloud - one for each student. In order to log in to your instance, you will need a security certificate. If you plan on using Linux or Mac OS X, please download this certificate. Otherwise if you plan on using Windows, please download this certificate.