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tutorial_page |
/IDE_2024_schedule |
Infectious Disease Genomic Epidemiology 2024 Schedule |
Workshop Pages for Students |
Infectious Disease Genomic Epidemiology 2024 Schedule |
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| Time (PST) | Time (EST) | Monday, May 13 | Time (PST) | Time (EST) | Tuesday, May 14 | Time (PST) | Time (EST) | Wednesday, May 15 | Time (PST) | Time (EST) | Thursday, May 16 | Time (PST) | Time (EST) | Friday, May 17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8:45 | 11:45 | Zoom opens | 8:00 | 11:00 | Optional: Integrative Assignment Review (Hamilton TAs) | 8:00 | 11:00 | Optional: Integrative Assignment Review (Hamilton TAs) | 8:00 | 11:00 | Optional: Integrative Assignment Review (Hamilton TAs) | 8:00 | 11:00 | Optional: Integrative Assignment Review (Hamilton TAs) |
| 9:00 | 12:00 | Welcome (Nia Hughes) | 9:00 | 12:00 | Module 3: Data Curation and Data Sharing (Emma Griffiths) | 9:00 | 12:00 | Module 5: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) | 9:00 | 12:00 | Module 6 Lab pt.2: Bacterial Pathogen Genomic Analysis - Genome-based Subtyping (Ed Taboada) | 9:00 | 12:00 | Module 8 Lab: Phylodynamics (Finlay Maguire) |
| 9:30 | 12:30 | AWS review (Zhibin Lu) | 10:00 | 13:00 | Module 3 Lab pt. 1: Data Curation and Data Sharing (Emma Griffiths) | 10:00 | 13:00 | Module 5 Lab pt. 1: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) | 10:00 | 13:00 | Module 7: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) | 10:00 | 13:00 | Module 9: Mobile Genetic Elements (Rob Beiko) |
| 10:00 | 13:00 | Module 1: Introduction to Genomic Epidemiology (William Hsiao) | ||||||||||||
| 11:00 | 14:00 | Break (20 min) | 11:00 | 14:00 | Break (20 min) | 11:00 | 14:00 | Break (20 min) | 11:00 | 14:00 | Break (20 min) | 11:00 | 14:00 | Break (20 min) |
| 11:20 | 14:20 | Module 2: De Novo Genome Assembly and Annotation (Gary van Domselaar) | 11:20 | 14:20 | Module 3 Lab pt. 2: Data Curation and Data Sharing (Emma Griffiths) | 11:20 | 14:20 | Module 5 Lab pt. 2: Viral Pathogen Genomic Analysis - Single Nucleotide Variants (Jared Simpson) | 11:20 | 14:20 | Module 7 Lab pt. 1: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) | 11:20 | 14:20 | Module 9 Lab: Mobile Genetic Elements (Rob Beiko) |
| 12:20 | 15:20 | Break (50 min) | 12:20 | 15:20 | Break (50 min) | 12:20 | 15:20 | Break (50 min) | 12:20 | 15:20 | Break (50 min) | 12:20 | 15:20 | Break (50 min) |
| 13:10 | 16:10 | Module 2: De Novo Genome Assembly and Annotation (Gary van Domselaar) | 13:10 | 16:10 | Module 4: Phylogenetic Analysis (Fiona Brinkman) - lecture | 13:10 | 16:10 | Module 6: Bacterial Pathogen Genomic Analysis - Genome-based Subtyping (Ed Taboada) | 13:10 | 16:10 | Module 7 Lab pt. 2: Antimicrobial Resistant Gene (AMR) Analysis (Andrew McArthur) | 13:10 | 16:10 | Module 10: Emerging Pathogen Detection and Identification (Gary van Domselaar) |
| 14:40 | 17:40 | Break (20 min) | 14:10 | 17:10 | Break (20 min) | 14:10 | 17:10 | Break (20 min) | 14:10 | 17:10 | Break (20 min) | 14:10 | 17:10 | Module 10 Lab: Emerging Pathogen Detection and Identification (Gary van Domselaar) |
| 15:00 | 18:00 | Introduction to Integrative Assignment | 14:30 | 17:30 | Module 4: Phylogenetic Analysis (Fiona Brinkman) - interactive portion | 14:30 | 17:30 | Module 6 Lab pt.1: Bacterial Pathogen Genomic Analysis - Genome-based Subtyping (Ed Taboada) | 14:30 | 17:30 | Module 8: Phylodynamics (Finlay Maguire) | 15:40 | 18:40 | Integrative Assignment Review |
| 16:00 | 19:00 | Finished | 15:00 | 18:00 | Finished | 15:30 | 18:30 | Finished | 15:30 | 18:30 | Finished | 16:10 | 19:10 | Survey and Closing Remarks |
| 16:00 | 19:00 | Optional: Integrative Assignment Review (Vancouver TAs) | 16:30 | 19:30 | Optional: Integrative Assignment Review (Vancouver TAs) | 16:30 | 19:30 | Optional: Integrative Assignment Review (Vancouver TAs) | 16:30 | 19:30 | Finished |