diff --git a/workflow/envs/release.yml b/workflow/envs/release.yml deleted file mode 100644 index 64383552..00000000 --- a/workflow/envs/release.yml +++ /dev/null @@ -1,383 +0,0 @@ -name: abc-env -channels: - - bioconda - - conda-forge - - defaults - - anaconda -dependencies: - - _libgcc_mutex=0.1=conda_forge - - _openmp_mutex=4.5=2_gnu - - _r-mutex=1.0.1=anacondar_1 - - aioeasywebdav=2.4.0=pyha770c72_0 - - aiohttp=3.9.5=py310h2372a71_0 - - aiosignal=1.3.1=pyhd8ed1ab_0 - - alabaster=0.7.16=pyhd8ed1ab_0 - - alsa-lib=1.2.11=hd590300_1 - - amply=0.1.6=pyhd8ed1ab_0 - - appdirs=1.4.4=pyh9f0ad1d_0 - - async-timeout=4.0.3=pyhd8ed1ab_0 - - attmap=0.13.2=pyhd8ed1ab_0 - - attr=2.5.1=h166bdaf_1 - - attrs=23.2.0=pyh71513ae_0 - - aws-c-auth=0.7.22=h96bc93b_2 - - aws-c-cal=0.6.14=h88a6e22_1 - - aws-c-common=0.9.19=h4ab18f5_0 - - aws-c-compression=0.2.18=h83b837d_6 - - aws-c-event-stream=0.4.2=ha47c788_12 - - aws-c-http=0.8.1=h29d6fba_17 - - aws-c-io=0.14.8=h21d4f22_5 - - aws-c-mqtt=0.10.4=h759edc4_4 - - aws-c-s3=0.5.9=h594631b_3 - - aws-c-sdkutils=0.1.16=h83b837d_2 - - aws-checksums=0.1.18=h83b837d_6 - - aws-crt-cpp=0.26.9=he3a8b3b_0 - - aws-sdk-cpp=1.11.329=hba8bd5f_3 - - babel=2.14.0=pyhd8ed1ab_0 - - bcrypt=4.1.3=py310he421c4c_0 - - bedtools=2.26.0=0 - - binutils_impl_linux-64=2.40=ha1999f0_1 - - black=24.4.2=py310hff52083_0 - - boto3=1.34.114=pyhd8ed1ab_0 - - botocore=1.34.114=pyge310_1234567_0 - - brotli=1.1.0=hd590300_1 - - brotli-bin=1.1.0=hd590300_1 - - brotli-python=1.1.0=py310hc6cd4ac_1 - - bwidget=1.9.14=ha770c72_1 - - bzip2=1.0.8=hd590300_5 - - c-ares=1.28.1=hd590300_0 - - ca-certificates=2024.2.2=hbcca054_0 - - cachetools=5.3.3=pyhd8ed1ab_0 - - cairo=1.18.0=h3faef2a_0 - - certifi=2024.2.2=pyhd8ed1ab_0 - - cffi=1.16.0=py310h2fee648_0 - - charset-normalizer=3.3.2=pyhd8ed1ab_0 - - click=8.1.7=unix_pyh707e725_0 - - coin-or-cbc=2.10.10=h9002f0b_0 - - coin-or-cgl=0.60.7=h516709c_0 - - coin-or-clp=1.17.8=h1ee7a9c_0 - - coin-or-osi=0.108.10=haf5fa05_0 - - coin-or-utils=2.11.11=hee58242_0 - - coincbc=2.10.10=0_metapackage - - colorama=0.4.6=pyhd8ed1ab_0 - - configargparse=1.7=pyhd8ed1ab_0 - - connection_pool=0.0.3=pyhd3deb0d_0 - - contourpy=1.2.1=py310hd41b1e2_0 - - cryptography=42.0.7=py310hb1bd9d3_0 - - curl=8.8.0=he654da7_0 - - cycler=0.12.1=pyhd8ed1ab_0 - - datrie=0.8.2=py310h2372a71_7 - - dbus=1.13.6=h5008d03_3 - - defusedxml=0.7.1=pyhd8ed1ab_0 - - dpath=2.1.6=pyha770c72_0 - - dropbox=11.36.2=pyhd8ed1ab_0 - - eido=0.2.2=pyhd8ed1ab_0 - - exceptiongroup=1.2.0=pyhd8ed1ab_2 - - execnet=2.1.1=pyhd8ed1ab_0 - - expat=2.6.2=h59595ed_0 - - filechunkio=1.8=py_2 - - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 - - font-ttf-inconsolata=3.000=h77eed37_0 - - font-ttf-source-code-pro=2.038=h77eed37_0 - - font-ttf-ubuntu=0.83=h77eed37_2 - - fontconfig=2.14.2=h14ed4e7_0 - - fonts-conda-ecosystem=1=0 - - fonts-conda-forge=1=0 - - fonttools=4.52.4=py310hc51659f_0 - - freetype=2.12.1=h267a509_2 - - fribidi=1.0.10=h36c2ea0_0 - - frozenlist=1.4.1=py310h2372a71_0 - - ftputil=5.1.0=pyhd8ed1ab_0 - - gcc=13.2.0=hc7bed06_7 - - gcc_impl_linux-64=13.2.0=h9eb54c0_7 - - gettext=0.22.5=h59595ed_2 - - gettext-tools=0.22.5=h59595ed_2 - - gflags=2.2.2=he1b5a44_1004 - - gfortran_impl_linux-64=13.2.0=h738fc78_7 - - gitdb=4.0.11=pyhd8ed1ab_0 - - gitpython=3.1.43=pyhd8ed1ab_0 - - glib=2.80.2=hf974151_0 - - glib-tools=2.80.2=hb6ce0ca_0 - - glog=0.7.0=hed5481d_0 - - google-api-core=2.19.0=pyhd8ed1ab_0 - - google-api-python-client=2.131.0=pyhd8ed1ab_0 - - google-auth=2.29.0=pyhca7485f_0 - - google-auth-httplib2=0.2.0=pyhd8ed1ab_0 - - google-cloud-core=2.4.1=pyhd8ed1ab_0 - - google-cloud-storage=2.16.0=pyhca7485f_0 - - google-crc32c=1.1.2=py310hc5c09a0_5 - - google-resumable-media=2.7.0=pyhd8ed1ab_0 - - googleapis-common-protos=1.63.0=pyhd8ed1ab_0 - - graphite2=1.3.13=h59595ed_1003 - - grpcio=1.62.2=py310h1b8f574_0 - - gst-plugins-base=1.24.4=h9ad1361_0 - - gstreamer=1.24.4=haf2f30d_0 - - gxx=13.2.0=hc7bed06_7 - - gxx_impl_linux-64=13.2.0=h2a599c4_7 - - harfbuzz=8.5.0=hfac3d4d_0 - - htslib=1.20=h81da01d_0 - - httplib2=0.22.0=pyhd8ed1ab_0 - - humanfriendly=10.0=pyhd8ed1ab_6 - - icu=73.2=h59595ed_0 - - idna=3.7=pyhd8ed1ab_0 - - imagesize=1.4.1=pyhd8ed1ab_0 - - importlib-metadata=7.1.0=pyha770c72_0 - - importlib_resources=6.4.0=pyhd8ed1ab_0 - - iniconfig=2.0.0=pyhd8ed1ab_0 - - jinja2=3.1.4=pyhd8ed1ab_0 - - jmespath=1.0.1=pyhd8ed1ab_0 - - jsonschema=4.22.0=pyhd8ed1ab_0 - - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 - - jupyter_core=5.7.2=py310hff52083_0 - - kernel-headers_linux-64=2.6.32=he073ed8_17 - - keyutils=1.6.1=h166bdaf_0 - - kiwisolver=1.4.5=py310hd41b1e2_1 - - krb5=1.21.2=h659d440_0 - - lame=3.100=h166bdaf_1003 - - lcms2=2.16=hb7c19ff_0 - - ld_impl_linux-64=2.40=hf3520f5_1 - - lerc=4.0.0=h27087fc_0 - - libabseil=20240116.2=cxx17_h59595ed_0 - - libarrow=16.1.0=hcb6531f_6_cpu - - libarrow-acero=16.1.0=hac33072_6_cpu - - libarrow-dataset=16.1.0=hac33072_6_cpu - - libarrow-substrait=16.1.0=h7e0c224_6_cpu - - libasprintf=0.22.5=h661eb56_2 - - libasprintf-devel=0.22.5=h661eb56_2 - - libblas=3.9.0=22_linux64_openblas - - libbrotlicommon=1.1.0=hd590300_1 - - libbrotlidec=1.1.0=hd590300_1 - - libbrotlienc=1.1.0=hd590300_1 - - libcap=2.69=h0f662aa_0 - - libcblas=3.9.0=22_linux64_openblas - - libclang-cpp15=15.0.7=default_h127d8a8_5 - - libclang13=18.1.6=default_h5d6823c_0 - - libcrc32c=1.1.2=h9c3ff4c_0 - - libcups=2.3.3=h4637d8d_4 - - libcurl=8.8.0=hca28451_0 - - libdeflate=1.20=hd590300_0 - - libedit=3.1.20191231=he28a2e2_2 - - libev=4.33=hd590300_2 - - libevent=2.1.12=hf998b51_1 - - libexpat=2.6.2=h59595ed_0 - - libffi=3.4.2=h7f98852_5 - - libflac=1.4.3=h59595ed_0 - - libgcc=7.2.0=h69d50b8_2 - - libgcc-devel_linux-64=13.2.0=hceb6213_107 - - libgcc-ng=13.2.0=h77fa898_7 - - libgcrypt=1.10.3=hd590300_0 - - libgettextpo=0.22.5=h59595ed_2 - - libgettextpo-devel=0.22.5=h59595ed_2 - - libgfortran-ng=13.2.0=h69a702a_7 - - libgfortran5=13.2.0=hca663fb_7 - - libglib=2.80.2=hf974151_0 - - libgomp=13.2.0=h77fa898_7 - - libgoogle-cloud=2.24.0=h2736e30_0 - - libgoogle-cloud-storage=2.24.0=h3d9a0c8_0 - - libgpg-error=1.49=h4f305b6_0 - - libgrpc=1.62.2=h15f2491_0 - - libiconv=1.17=hd590300_2 - - libjpeg-turbo=3.0.0=hd590300_1 - - liblapack=3.9.0=22_linux64_openblas - - liblapacke=3.9.0=22_linux64_openblas - - libllvm15=15.0.7=hb3ce162_4 - - libllvm18=18.1.6=hb77312f_0 - - libnghttp2=1.58.0=h47da74e_1 - - libnsl=2.0.1=hd590300_0 - - libogg=1.3.4=h7f98852_1 - - libopenblas=0.3.27=pthreads_h413a1c8_0 - - libopus=1.3.1=h7f98852_1 - - libparquet=16.1.0=h6a7eafb_6_cpu - - libpng=1.6.43=h2797004_0 - - libpq=16.3=ha72fbe1_0 - - libprotobuf=4.25.3=h08a7969_0 - - libre2-11=2023.09.01=h5a48ba9_2 - - libsanitizer=13.2.0=h6ddb7a1_7 - - libsndfile=1.2.2=hc60ed4a_1 - - libsodium=1.0.18=h36c2ea0_1 - - libsqlite=3.45.3=h2797004_0 - - libssh2=1.11.0=h0841786_0 - - libstdcxx-devel_linux-64=13.2.0=hceb6213_107 - - libstdcxx-ng=13.2.0=hc0a3c3a_7 - - libsystemd0=255=h3516f8a_1 - - libthrift=0.19.0=hb90f79a_1 - - libtiff=4.6.0=h1dd3fc0_3 - - libutf8proc=2.8.0=h166bdaf_0 - - libuuid=2.38.1=h0b41bf4_0 - - libvorbis=1.3.7=h9c3ff4c_0 - - libwebp-base=1.4.0=hd590300_0 - - libxcb=1.15=h0b41bf4_0 - - libxcrypt=4.4.36=hd590300_1 - - libxkbcommon=1.7.0=h662e7e4_0 - - libxml2=2.12.7=hc051c1a_0 - - libzlib=1.2.13=h4ab18f5_6 - - logmuse=0.2.6=pyh8c360ce_0 - - lz4-c=1.9.4=hcb278e6_0 - - macs2=2.2.9.1=py310h4b81fae_0 - - make=4.3=hd18ef5c_1 - - markdown-it-py=3.0.0=pyhd8ed1ab_0 - - markupsafe=2.1.5=py310h2372a71_0 - - matplotlib=3.8.4=py310hff52083_2 - - matplotlib-base=3.8.4=py310hef631a5_2 - - mdurl=0.1.2=pyhd8ed1ab_0 - - mpg123=1.32.6=h59595ed_0 - - multidict=6.0.5=py310h2372a71_0 - - munkres=1.0.7=py_1 - - mypy_extensions=1.0.0=pyha770c72_0 - - mysql-common=8.3.0=hf1915f5_4 - - mysql-libs=8.3.0=hca2cd23_4 - - natsort=8.4.0=pyhd8ed1ab_0 - - nbformat=5.10.4=pyhd8ed1ab_0 - - ncls=0.0.68=py310h4b81fae_2 - - ncurses=6.5=h59595ed_0 - - nspr=4.35=h27087fc_0 - - nss=3.100=hca3bf56_0 - - numpy=1.26.4=py310hb13e2d6_0 - - oauth2client=4.1.3=py_0 - - openjpeg=2.5.2=h488ebb8_0 - - openssl=3.3.0=h4ab18f5_3 - - orc=2.0.1=h17fec99_1 - - packaging=24.0=pyhd8ed1ab_0 - - pandas=2.2.2=py310hf9f9076_1 - - pango=1.52.2=ha41ecd1_0 - - paramiko=3.4.0=pyhd8ed1ab_0 - - pathspec=0.12.1=pyhd8ed1ab_0 - - patsy=0.5.6=pyhd8ed1ab_0 - - pcre2=10.43=hcad00b1_0 - - peppy=0.40.2=pyhd8ed1ab_0 - - pillow=10.3.0=py310hf73ecf8_0 - - pip=24.0=pyhd8ed1ab_0 - - pixman=0.43.2=h59595ed_0 - - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 - - plac=1.4.3=pyhd8ed1ab_0 - - platformdirs=4.2.2=pyhd8ed1ab_0 - - pluggy=1.5.0=pyhd8ed1ab_0 - - ply=3.11=pyhd8ed1ab_2 - - prettytable=3.10.0=pyhd8ed1ab_0 - - proto-plus=1.23.0=pyhd8ed1ab_0 - - protobuf=4.25.3=py310ha8c1f0e_0 - - psutil=5.9.8=py310h2372a71_0 - - pthread-stubs=0.4=h36c2ea0_1001 - - pulp=2.7.0=py310hff52083_1 - - pulseaudio-client=17.0=hb77b528_0 - - pyarrow=16.1.0=py310h17c5347_1 - - pyarrow-core=16.1.0=py310h6f79a3a_1_cpu - - pyasn1=0.6.0=pyhd8ed1ab_0 - - pyasn1-modules=0.4.0=pyhd8ed1ab_0 - - pybigwig=0.3.22=py310h79000e5_2 - - pycparser=2.22=pyhd8ed1ab_0 - - pygments=2.18.0=pyhd8ed1ab_0 - - pynacl=1.5.0=py310h2372a71_3 - - pyopenssl=24.0.0=pyhd8ed1ab_0 - - pyparsing=3.1.2=pyhd8ed1ab_0 - - pyqt=5.15.9=py310h04931ad_5 - - pyqt5-sip=12.12.2=py310hc6cd4ac_5 - - pyranges=0.0.129=pyh7cba7a3_0 - - pyrle=0.0.40=py310h4b81fae_0 - - pysam=0.22.1=py310h41dec4a_0 - - pysftp=0.2.9=py_1 - - pysocks=1.7.1=pyha2e5f31_6 - - pytest=8.2.1=pyhd8ed1ab_0 - - pytest-xdist=3.5.0=pyhd8ed1ab_0 - - python=3.10.14=hd12c33a_0_cpython - - python-dateutil=2.9.0=pyhd8ed1ab_0 - - python-fastjsonschema=2.19.1=pyhd8ed1ab_0 - - python-irodsclient=2.0.1=pyhd8ed1ab_0 - - python-tzdata=2024.1=pyhd8ed1ab_0 - - python_abi=3.10=4_cp310 - - pytz=2024.1=pyhd8ed1ab_0 - - pyu2f=0.1.5=pyhd8ed1ab_0 - - pyyaml=6.0.1=py310h2372a71_1 - - qt-main=5.15.8=hc9dc06e_21 - - r-base=4.3.3=hf0d99cb_1 - - re2=2023.09.01=h7f4b329_2 - - readline=8.2=h8228510_1 - - referencing=0.35.1=pyhd8ed1ab_0 - - requests=2.32.2=pyhd8ed1ab_0 - - reretry=0.11.8=pyhd8ed1ab_0 - - rich=13.7.1=pyhd8ed1ab_0 - - rpds-py=0.18.1=py310he421c4c_0 - - rsa=4.9=pyhd8ed1ab_0 - - s2n=1.4.15=he19d79f_0 - - s3transfer=0.10.1=pyhd8ed1ab_0 - - samtools=1.20=h50ea8bc_0 - - scipy=1.13.1=py310h93e2701_0 - - seaborn=0.13.2=hd8ed1ab_2 - - seaborn-base=0.13.2=pyhd8ed1ab_2 - - sed=4.8=he412f7d_0 - - setuptools=70.0.0=pyhd8ed1ab_0 - - setuptools-scm=8.1.0=pyhd8ed1ab_0 - - sip=6.7.12=py310hc6cd4ac_0 - - six=1.16.0=pyh6c4a22f_0 - - slacker=0.14.0=py_0 - - smart_open=6.4.0=pyhd8ed1ab_0 - - smmap=5.0.0=pyhd8ed1ab_0 - - snakemake=7.32.4=hdfd78af_1 - - snakemake-minimal=7.32.4=pyhdfd78af_1 - - snappy=1.2.0=hdb0a2a9_1 - - snowballstemmer=2.2.0=pyhd8ed1ab_0 - - sorted_nearest=0.0.39=py310h4b81fae_1 - - sphinx=7.3.7=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0 - - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0 - - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - - statsmodels=0.14.2=py310h261611a_0 - - stone=3.3.6=pyhd8ed1ab_0 - - stopit=1.1.2=py_0 - - sysroot_linux-64=2.12=he073ed8_17 - - tabix=1.11=hdfd78af_0 - - tabulate=0.9.0=pyhd8ed1ab_1 - - throttler=1.2.2=pyhd8ed1ab_0 - - tk=8.6.13=noxft_h4845f30_101 - - tktable=2.10=h0c5db8f_5 - - toml=0.10.2=pyhd8ed1ab_0 - - tomli=2.0.1=pyhd8ed1ab_0 - - toposort=1.10=pyhd8ed1ab_0 - - tornado=6.4=py310h2372a71_0 - - traitlets=5.14.3=pyhd8ed1ab_0 - - typing-extensions=4.11.0=hd8ed1ab_0 - - typing_extensions=4.11.0=pyha770c72_0 - - tzdata=2024a=h0c530f3_0 - - ubiquerg=0.7.0=pyhd8ed1ab_0 - - unicodedata2=15.1.0=py310h2372a71_0 - - uritemplate=4.1.1=pyhd8ed1ab_0 - - urllib3=2.2.1=pyhd8ed1ab_0 - - veracitools=0.1.3=py_0 - - wcwidth=0.2.13=pyhd8ed1ab_0 - - wheel=0.43.0=pyhd8ed1ab_1 - - wrapt=1.16.0=py310h2372a71_0 - - xcb-util=0.4.0=hd590300_1 - - xcb-util-image=0.4.0=h8ee46fc_1 - - xcb-util-keysyms=0.4.0=h8ee46fc_1 - - xcb-util-renderutil=0.3.9=hd590300_1 - - xcb-util-wm=0.4.1=h8ee46fc_1 - - xkeyboard-config=2.41=hd590300_0 - - xorg-kbproto=1.0.7=h7f98852_1002 - - xorg-libice=1.1.1=hd590300_0 - - xorg-libsm=1.2.4=h7391055_0 - - xorg-libx11=1.8.9=h8ee46fc_0 - - xorg-libxau=1.0.11=hd590300_0 - - xorg-libxdmcp=1.1.3=h7f98852_0 - - xorg-libxext=1.3.4=h0b41bf4_2 - - xorg-libxrender=0.9.11=hd590300_0 - - xorg-libxt=1.3.0=hd590300_1 - - xorg-renderproto=0.11.1=h7f98852_1002 - - xorg-xextproto=7.3.0=h0b41bf4_1003 - - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - - xorg-xproto=7.0.31=h7f98852_1007 - - xz=5.2.6=h166bdaf_0 - - yaml=0.2.5=h7f98852_2 - - yarl=1.9.4=py310h2372a71_0 - - yte=1.5.4=pyha770c72_0 - - zipp=3.17.0=pyhd8ed1ab_0 - - zlib=1.2.13=h4ab18f5_6 - - zstd=1.5.6=ha6fb4c9_0 - - pip: - - docutils==0.20.1 - - hic-straw==1.3.1 - - pybind11==2.12.0 - - sphinx-rtd-theme==2.0.0 - - sphinxcontrib-jquery==4.1 -prefix: /oak/stanford/groups/engreitz/Users/atan5133/.conda/envs/abc-env