diff --git a/inputs/templates/terra_workspaces/cohort_mode/cohort_mode_workspace_dashboard.md.tmpl b/inputs/templates/terra_workspaces/cohort_mode/cohort_mode_workspace_dashboard.md.tmpl index a9454be9e..dd4a682b3 100644 --- a/inputs/templates/terra_workspaces/cohort_mode/cohort_mode_workspace_dashboard.md.tmpl +++ b/inputs/templates/terra_workspaces/cohort_mode/cohort_mode_workspace_dashboard.md.tmpl @@ -198,6 +198,10 @@ Read the full MergeBatchSites documentation [here](https://github.com/broadinsti creating a cohort sample_set_set +#### Single-batch vs. Multi-batch processing +* If you only have one batch (`sample_set`), you will be using the workflows with the suffix `_SingleBatch` from `11-GenotypeBatch_SingleBatch` to `18-AnnotateVcf_SingleBatch`. We recommend deleting the workflow versions without the `_SingleBatch` suffix from `11-GenotypeBatch` to `18-AnnotateVcf` now to avoid confusion. +* If you have multiple batches (`sample_set`s), you will be using the cohort-mode versions of the workflows from `11-GenotypeBatch` onwards, which do not have the suffix `_SingleBatch`. We recommend deleting the workflow versions with the `_SingleBatch` suffix now to avoid confusion. + #### 11-GenotypeBatch Read the full GenotypeBatch documentation [here](https://github.com/broadinstitute/gatk-sv#genotype-batch).