From 30e1cb6107506f8dfe40019da93e880effd7f216 Mon Sep 17 00:00:00 2001
From: Karan Jaisingh <kjaising@broadinstitute.org>
Date: Wed, 4 Dec 2024 14:39:31 -0500
Subject: [PATCH] Removed tabix from svconcordance

---
 wdl/SVConcordance.wdl | 8 --------
 1 file changed, 8 deletions(-)

diff --git a/wdl/SVConcordance.wdl b/wdl/SVConcordance.wdl
index 8f0b4a4b4..f332f282b 100644
--- a/wdl/SVConcordance.wdl
+++ b/wdl/SVConcordance.wdl
@@ -99,14 +99,6 @@ task SVConcordanceTask {
   }
   command <<<
     set -euo pipefail
-
-    if [[ ! -f "~{eval_vcf}.tbi" ]]; then
-        tabix "~{eval_vcf}"
-    fi
-
-    if [[ ! -f "~{truth_vcf}.tbi" ]]; then
-        tabix "~{truth_vcf}"
-    fi
     
     function getJavaMem() {
     # get JVM memory in MiB by getting total memory from /proc/meminfo