diff --git a/wdl/TrainGqRecalibrator.wdl b/wdl/TrainGqRecalibrator.wdl index 1e13267b1..bdd722af7 100644 --- a/wdl/TrainGqRecalibrator.wdl +++ b/wdl/TrainGqRecalibrator.wdl @@ -52,7 +52,7 @@ task TrainGqRecalibratorTask { Float mem_scale_vcf_size = 25.2 Float mem_scale_num_entries = "3.7e-7" Float mem_gb_overhead = 1.5 - Int preemptible_tries = 3 + Int? preemptible_tries } Int disk_gb = round(1000 + size([train_vcf, train_vcf_index, ped_file, truth_file], "GiB") + @@ -69,7 +69,7 @@ task TrainGqRecalibratorTask { runtime { docker: gatk_docker cpu: 1 - preemptible: preemptible_tries + preemptible: select_first([preemptible_tries, 3]) max_retries: 1 memory: mem_gb + " GiB" disks: "local-disk " + disk_gb + " HDD"