From 84704f9fbc0edab0e148e9e03c6a7a5ee171f17c Mon Sep 17 00:00:00 2001 From: Mark Walker Date: Mon, 26 Feb 2024 15:36:13 -0500 Subject: [PATCH] Add preemptible tries parameter to TrainGqRecalibratorTask --- wdl/TrainGqRecalibrator.wdl | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/wdl/TrainGqRecalibrator.wdl b/wdl/TrainGqRecalibrator.wdl index 7f0ca84f9..1e13267b1 100644 --- a/wdl/TrainGqRecalibrator.wdl +++ b/wdl/TrainGqRecalibrator.wdl @@ -52,6 +52,7 @@ task TrainGqRecalibratorTask { Float mem_scale_vcf_size = 25.2 Float mem_scale_num_entries = "3.7e-7" Float mem_gb_overhead = 1.5 + Int preemptible_tries = 3 } Int disk_gb = round(1000 + size([train_vcf, train_vcf_index, ped_file, truth_file], "GiB") + @@ -68,7 +69,7 @@ task TrainGqRecalibratorTask { runtime { docker: gatk_docker cpu: 1 - preemptible: 3 + preemptible: preemptible_tries max_retries: 1 memory: mem_gb + " GiB" disks: "local-disk " + disk_gb + " HDD"