added public path for gnomad v4 annotation file

broadinstitute · Dec 6, 2024 · d5ae0b3 · d5ae0b3
1 parent ee59e60
commit d5ae0b3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/inputs/values/resources_hg38.json b/inputs/values/resources_hg38.json
@@ -18,7 +18,7 @@
   "empty_file" : "gs://gatk-sv-resources-public/hg38/v0/sv-resources/resources/v1/empty.file",
   "exclude_intervals_for_gcnv_filter_intervals" : "gs://gatk-sv-resources-public/hg38/v0/sv-resources/resources/v1/hg38.wgs.blacklist.wPAR.bed",
   "external_af_population" : ["ALL", "AFR", "AMR", "EAS", "EUR", "MID", "FIN", "ASJ", "RMI", "SAS", "AMI"],
-  "external_af_ref_bed" : "gs://fc-secure-7affd19a-f722-4855-ab52-99e2f11b7c4c/gnomad_v4_CNVFreq.tsv.gz",
+  "external_af_ref_bed" : "gs://gatk-sv-resources-public/gnomad_AF/gnomad_v4_SV.Freq.tsv.gz",
   "external_af_ref_bed_prefix" : "gnomad_v4.1_sv",
   "genome_file" : "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/resources/v1/hg38.genome",
   "hervk_reference": "gs://gatk-sv-resources-public/hg38/v0/sv-resources/resources/v1/HERVK.sorted.bed.gz",