From d5ae0b3d78a28375eecddad1bb003a328ace46ff Mon Sep 17 00:00:00 2001 From: Krithika Nathamuni Date: Fri, 6 Dec 2024 12:54:09 -0500 Subject: [PATCH] added public path for gnomad v4 annotation file --- inputs/values/resources_hg38.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inputs/values/resources_hg38.json b/inputs/values/resources_hg38.json index 17eb75c96..e8d86638f 100644 --- a/inputs/values/resources_hg38.json +++ b/inputs/values/resources_hg38.json @@ -18,7 +18,7 @@ "empty_file" : "gs://gatk-sv-resources-public/hg38/v0/sv-resources/resources/v1/empty.file", "exclude_intervals_for_gcnv_filter_intervals" : "gs://gatk-sv-resources-public/hg38/v0/sv-resources/resources/v1/hg38.wgs.blacklist.wPAR.bed", "external_af_population" : ["ALL", "AFR", "AMR", "EAS", "EUR", "MID", "FIN", "ASJ", "RMI", "SAS", "AMI"], - "external_af_ref_bed" : "gs://fc-secure-7affd19a-f722-4855-ab52-99e2f11b7c4c/gnomad_v4_CNVFreq.tsv.gz", + "external_af_ref_bed" : "gs://gatk-sv-resources-public/gnomad_AF/gnomad_v4_SV.Freq.tsv.gz", "external_af_ref_bed_prefix" : "gnomad_v4.1_sv", "genome_file" : "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/resources/v1/hg38.genome", "hervk_reference": "gs://gatk-sv-resources-public/hg38/v0/sv-resources/resources/v1/HERVK.sorted.bed.gz",