From c54a341df601997bca40582c10126b4035b5ad59 Mon Sep 17 00:00:00 2001 From: aawdeh Date: Fri, 19 Jan 2024 10:23:12 -0500 Subject: [PATCH] Update Dockerfile to checkout to aa-distbwa branch --- 3rd-party-tools/samtools-dist-bwa/Dockerfile | 3 +++ 1 file changed, 3 insertions(+) diff --git a/3rd-party-tools/samtools-dist-bwa/Dockerfile b/3rd-party-tools/samtools-dist-bwa/Dockerfile index 5b558ce6..6adb7029 100644 --- a/3rd-party-tools/samtools-dist-bwa/Dockerfile +++ b/3rd-party-tools/samtools-dist-bwa/Dockerfile @@ -20,6 +20,9 @@ RUN set -eux; \ cd temp; \ # clone fork of Open-Omics-Acceleration-Framework with changes added for input/output git clone --recursive https://github.com/IntelLabs/Open-Omics-Acceleration-Framework.git; \ + # for testing purposes checkout to branch + cd Open-Omics-Acceleration-Framework; \ + git checkout aa-distbwa; \ # install packages cd Open-Omics-Acceleration-Framework/pipelines/fq2sortedbam; \