From 3cf4ceef3a878780b34f14a8e1a24643deffb72c Mon Sep 17 00:00:00 2001
From: guillaume-gricourt <guipagui@gmail.com>
Date: Thu, 14 Dec 2023 15:13:59 +0100
Subject: [PATCH 1/3] feat(tools): retropath2_wrapper, update version

---
 tools/retropath2_wrapper/retropath2_wrapper.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/retropath2_wrapper/retropath2_wrapper.xml b/tools/retropath2_wrapper/retropath2_wrapper.xml
index a400a632..0ec936bf 100644
--- a/tools/retropath2_wrapper/retropath2_wrapper.xml
+++ b/tools/retropath2_wrapper/retropath2_wrapper.xml
@@ -2,7 +2,7 @@
     <description>Build a reaction network from a set of source compounds to a set of sink compounds</description>
     <macros>
         <token name="@VERSION_SUFFIX@">0</token>
-        <token name="@TOOL_VERSION@">3.0.1</token>
+        <token name="@TOOL_VERSION@">3.1.0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">retropath2_wrapper</requirement>

From f1e1dba23d53c245ee3bd34a3e9bc17cb81a05a7 Mon Sep 17 00:00:00 2001
From: guillaume-gricourt <guipagui@gmail.com>
Date: Wed, 14 Feb 2024 13:44:06 +0100
Subject: [PATCH 2/3] fix(tools): retropath2, dirname matches id

---
 tools/{retropath2_wrapper => retropath2}/.gitignore               | 0
 tools/{retropath2_wrapper => retropath2}/.shed.yml                | 0
 tools/{retropath2_wrapper => retropath2}/retropath2_wrapper.xml   | 0
 .../test-data/results_retropath2.csv                              | 0
 tools/{retropath2_wrapper => retropath2}/test-data/rules.csv      | 0
 tools/{retropath2_wrapper => retropath2}/test-data/sink.csv       | 0
 .../{retropath2_wrapper => retropath2}/test-data/source_inchi.txt | 0
 7 files changed, 0 insertions(+), 0 deletions(-)
 rename tools/{retropath2_wrapper => retropath2}/.gitignore (100%)
 rename tools/{retropath2_wrapper => retropath2}/.shed.yml (100%)
 rename tools/{retropath2_wrapper => retropath2}/retropath2_wrapper.xml (100%)
 rename tools/{retropath2_wrapper => retropath2}/test-data/results_retropath2.csv (100%)
 rename tools/{retropath2_wrapper => retropath2}/test-data/rules.csv (100%)
 rename tools/{retropath2_wrapper => retropath2}/test-data/sink.csv (100%)
 rename tools/{retropath2_wrapper => retropath2}/test-data/source_inchi.txt (100%)

diff --git a/tools/retropath2_wrapper/.gitignore b/tools/retropath2/.gitignore
similarity index 100%
rename from tools/retropath2_wrapper/.gitignore
rename to tools/retropath2/.gitignore
diff --git a/tools/retropath2_wrapper/.shed.yml b/tools/retropath2/.shed.yml
similarity index 100%
rename from tools/retropath2_wrapper/.shed.yml
rename to tools/retropath2/.shed.yml
diff --git a/tools/retropath2_wrapper/retropath2_wrapper.xml b/tools/retropath2/retropath2_wrapper.xml
similarity index 100%
rename from tools/retropath2_wrapper/retropath2_wrapper.xml
rename to tools/retropath2/retropath2_wrapper.xml
diff --git a/tools/retropath2_wrapper/test-data/results_retropath2.csv b/tools/retropath2/test-data/results_retropath2.csv
similarity index 100%
rename from tools/retropath2_wrapper/test-data/results_retropath2.csv
rename to tools/retropath2/test-data/results_retropath2.csv
diff --git a/tools/retropath2_wrapper/test-data/rules.csv b/tools/retropath2/test-data/rules.csv
similarity index 100%
rename from tools/retropath2_wrapper/test-data/rules.csv
rename to tools/retropath2/test-data/rules.csv
diff --git a/tools/retropath2_wrapper/test-data/sink.csv b/tools/retropath2/test-data/sink.csv
similarity index 100%
rename from tools/retropath2_wrapper/test-data/sink.csv
rename to tools/retropath2/test-data/sink.csv
diff --git a/tools/retropath2_wrapper/test-data/source_inchi.txt b/tools/retropath2/test-data/source_inchi.txt
similarity index 100%
rename from tools/retropath2_wrapper/test-data/source_inchi.txt
rename to tools/retropath2/test-data/source_inchi.txt

From 3cafd51faf46440956aa5a54d93891064170e87a Mon Sep 17 00:00:00 2001
From: guillaume-gricourt <guipagui@gmail.com>
Date: Wed, 14 Feb 2024 14:24:40 +0100
Subject: [PATCH 3/3] chore(github): update

---
 .tt_skip | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.tt_skip b/.tt_skip
index fc878f2c..a9e53050 100644
--- a/.tt_skip
+++ b/.tt_skip
@@ -1,5 +1,5 @@
 tools/neo4jsbml
-tools/retropath2_wrapper
+tools/retropath2
 tools/rpbasicdesign
 tools/partsgenie
 workflows/retrosynthesis_workflow